Query psy14623
Match_columns 622
No_of_seqs 150 out of 1459
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:28:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03339 TCP1_epsilon TCP-1 (CT 100.0 5E-105 1E-109 889.9 60.0 525 13-582 2-526 (526)
2 KOG0361|consensus 100.0 2E-106 5E-111 806.3 38.5 535 15-604 3-542 (543)
3 TIGR02343 chap_CCT_epsi T-comp 100.0 3E-104 7E-109 882.2 58.5 526 14-584 7-532 (532)
4 TIGR02339 thermosome_arch ther 100.0 2E-102 4E-107 868.1 58.0 510 21-582 5-518 (519)
5 cd03335 TCP1_alpha TCP-1 (CTT 100.0 6E-102 1E-106 865.5 58.6 513 29-584 3-526 (527)
6 TIGR02347 chap_CCT_zeta T-comp 100.0 1E-101 2E-106 860.3 59.0 508 28-585 10-527 (531)
7 TIGR02344 chap_CCT_gamma T-com 100.0 1E-101 2E-106 863.5 58.6 509 28-585 10-523 (525)
8 cd03343 cpn60 cpn60 chaperonin 100.0 3E-101 7E-106 859.3 58.2 506 28-583 9-516 (517)
9 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1E-100 2E-105 854.8 59.2 513 20-585 4-521 (522)
10 TIGR02342 chap_CCT_delta T-com 100.0 2E-100 4E-105 850.8 58.1 505 30-584 5-517 (517)
11 PTZ00212 T-complex protein 1 s 100.0 5E-100 1E-104 849.6 58.4 513 17-584 7-526 (533)
12 cd03336 TCP1_beta TCP-1 (CTT o 100.0 9E-100 2E-104 845.3 58.9 504 28-584 7-514 (517)
13 cd03338 TCP1_delta TCP-1 (CTT 100.0 7E-100 1E-104 847.8 57.6 504 30-583 4-515 (515)
14 TIGR02340 chap_CCT_alpha T-com 100.0 9E-100 2E-104 848.6 58.7 515 28-585 6-531 (536)
15 TIGR02345 chap_CCT_eta T-compl 100.0 1.7E-99 4E-104 843.9 56.4 512 20-585 6-521 (522)
16 TIGR02346 chap_CCT_theta T-com 100.0 1.1E-98 2E-103 837.5 58.6 504 29-584 12-520 (531)
17 TIGR02341 chap_CCT_beta T-comp 100.0 2.2E-98 5E-103 833.0 58.5 505 28-585 8-516 (519)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 3E-98 6E-103 826.1 55.3 478 28-584 6-483 (484)
19 KOG0358|consensus 100.0 4.7E-98 1E-102 745.5 34.9 504 30-583 22-533 (534)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4E-96 9E-101 809.1 51.9 465 28-582 10-479 (480)
21 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.3E-93 1.4E-97 782.1 53.3 464 31-583 5-471 (472)
22 cd00309 chaperonin_type_I_II c 100.0 2.1E-92 4.5E-97 779.3 52.7 462 29-582 3-464 (464)
23 COG0459 GroL Chaperonin GroEL 100.0 6.5E-92 1.4E-96 771.2 48.8 504 27-588 4-518 (524)
24 KOG0363|consensus 100.0 5.4E-92 1.2E-96 699.0 37.4 515 17-586 3-521 (527)
25 PRK00013 groEL chaperonin GroE 100.0 9.2E-90 2E-94 763.8 52.7 478 27-603 3-542 (542)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 6.6E-90 1.4E-94 765.5 51.7 483 46-585 1-485 (485)
27 PRK12849 groEL chaperonin GroE 100.0 8.2E-89 1.8E-93 756.2 52.7 466 27-587 3-526 (542)
28 PRK12850 groEL chaperonin GroE 100.0 2.2E-88 4.8E-93 753.9 52.8 483 27-604 4-543 (544)
29 PRK12851 groEL chaperonin GroE 100.0 2.3E-88 4.9E-93 753.4 52.8 479 28-601 5-540 (541)
30 PTZ00114 Heat shock protein 60 100.0 5.9E-87 1.3E-91 744.9 53.5 467 28-587 16-543 (555)
31 PRK12852 groEL chaperonin GroE 100.0 5.8E-87 1.3E-91 744.2 52.9 482 27-603 4-543 (545)
32 cd03344 GroEL GroEL_like type 100.0 1.2E-86 2.7E-91 737.0 53.0 460 28-582 2-519 (520)
33 TIGR02348 GroEL chaperonin Gro 100.0 7.5E-86 1.6E-90 732.1 52.2 457 28-584 3-522 (524)
34 PRK14104 chaperonin GroEL; Pro 100.0 3.4E-85 7.3E-90 727.9 51.5 483 27-603 4-544 (546)
35 KOG0364|consensus 100.0 1.2E-87 2.7E-92 682.3 28.6 521 15-587 2-524 (527)
36 KOG0362|consensus 100.0 2.6E-85 5.5E-90 676.0 43.6 520 7-586 1-523 (537)
37 KOG0360|consensus 100.0 4.9E-87 1.1E-91 684.0 29.7 517 29-588 14-540 (545)
38 CHL00093 groEL chaperonin GroE 100.0 3.1E-84 6.6E-89 720.0 48.5 466 28-585 4-526 (529)
39 PLN03167 Chaperonin-60 beta su 100.0 2.1E-83 4.6E-88 717.1 46.2 472 27-587 57-584 (600)
40 KOG0359|consensus 100.0 5.3E-79 1.1E-83 618.5 26.9 502 30-587 13-518 (520)
41 KOG0357|consensus 100.0 5E-72 1.1E-76 552.4 24.9 395 10-586 4-398 (400)
42 KOG0356|consensus 100.0 2E-57 4.3E-62 476.5 35.1 475 26-588 16-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 4.3E-38 9.4E-43 320.1 27.5 238 179-467 15-258 (261)
44 cd03333 chaperonin_like chaper 100.0 1.4E-34 3.1E-39 286.2 24.0 208 165-462 2-209 (209)
45 KOG0230|consensus 99.8 1.3E-20 2.8E-25 217.0 17.1 242 182-475 332-579 (1598)
46 PF02579 Nitro_FeMo-Co: Dinitr 58.8 36 0.00079 28.2 6.6 44 289-334 44-87 (94)
47 COG1433 Uncharacterized conser 53.1 52 0.0011 29.5 6.7 39 289-328 56-94 (121)
48 cd00851 MTH1175 This uncharact 48.9 41 0.0009 28.4 5.5 44 289-334 54-97 (103)
49 cd00562 NifX_NifB This CD repr 38.2 94 0.002 26.1 6.0 38 290-328 53-90 (102)
50 PRK13600 putative ribosomal pr 36.8 1.4E+02 0.003 25.0 6.4 52 288-342 19-74 (84)
51 PRK07283 hypothetical protein; 36.8 1.3E+02 0.0027 25.8 6.5 50 289-341 25-78 (98)
52 PRK04175 rpl7ae 50S ribosomal 29.9 1.7E+02 0.0037 26.2 6.4 51 289-342 37-92 (122)
53 PRK07714 hypothetical protein; 28.8 2E+02 0.0044 24.6 6.5 51 289-342 25-79 (100)
54 TIGR03677 rpl7ae 50S ribosomal 28.6 1.8E+02 0.0039 25.8 6.3 50 289-341 33-87 (117)
55 PF02603 Hpr_kinase_N: HPr Ser 28.3 54 0.0012 29.5 2.9 52 275-326 58-111 (127)
56 PTZ00106 60S ribosomal protein 28.0 2.6E+02 0.0056 24.5 7.0 51 289-341 32-86 (108)
57 smart00574 POX domain associat 27.1 1.6E+02 0.0035 27.1 5.6 46 440-485 84-129 (140)
58 PF07526 POX: Associated with 25.4 1.5E+02 0.0033 27.3 5.3 46 440-485 84-129 (140)
59 COG3962 Acetolactate synthase 25.3 61 0.0013 35.7 3.1 39 447-486 217-255 (617)
60 PRK13602 putative ribosomal pr 24.4 2.8E+02 0.0061 22.9 6.3 52 288-342 17-72 (82)
61 PRK13601 putative L7Ae-like ri 23.6 2.9E+02 0.0062 23.0 6.1 51 289-342 15-69 (82)
62 COG4359 Uncharacterized conser 22.8 1.8E+02 0.0039 28.2 5.3 44 285-328 76-123 (220)
63 PF01248 Ribosomal_L7Ae: Ribos 22.6 1.4E+02 0.0031 24.9 4.4 52 288-342 21-77 (95)
64 PRK05583 ribosomal protein L7A 22.5 3E+02 0.0064 23.9 6.3 51 289-342 24-78 (104)
65 PRK06683 hypothetical protein; 22.2 3.2E+02 0.0069 22.6 6.2 51 289-342 18-72 (82)
66 cd00852 NifB NifB belongs to a 20.9 2.6E+02 0.0056 23.9 5.7 37 289-328 58-94 (106)
67 cd01143 YvrC Periplasmic bindi 20.1 2.9E+02 0.0063 25.9 6.5 50 292-341 54-110 (195)
No 1
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.9e-105 Score=889.90 Aligned_cols=525 Identities=77% Similarity=1.181 Sum_probs=495.2
Q ss_pred CCCCceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHH
Q psy14623 13 EFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKL 92 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akl 92 (622)
..+.|..+++++.+.+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akl 81 (526)
T cd03339 2 EYGRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKL 81 (526)
T ss_pred CCCCCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHH
Confidence 34556555666533457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHH
Q psy14623 93 MVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAM 172 (622)
Q Consensus 93 l~~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~ 172 (622)
+++++++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++++..+..+.+.|.++|+
T Consensus 82 l~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~ 161 (526)
T cd03339 82 LVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAM 161 (526)
T ss_pred HHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877655556889999999
Q ss_pred HhhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEE
Q psy14623 173 TTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAI 252 (622)
Q Consensus 173 tsl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~l 252 (622)
|++++|+.+.+.++|++++++|+..+.+.....+|++.|+|++++|++++||++++|++|+++|.+++|+++.+|+||++
T Consensus 162 tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~l 241 (526)
T cd03339 162 TSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAI 241 (526)
T ss_pred HhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEE
Confidence 99999999899999999999999998653334567788999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccH
Q psy14623 253 LTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDI 332 (622)
Q Consensus 253 l~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L 332 (622)
++++|++++++++.++.++++++++.+.++|+++++++++++++.|++||+++++|++.+++||.++||.+++++++++|
T Consensus 242 l~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~L 321 (526)
T cd03339 242 LTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEI 321 (526)
T ss_pred EEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHH
Confidence 99999999998888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEec
Q psy14623 333 ELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFG 412 (622)
Q Consensus 333 ~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g 412 (622)
+|||++|||++++++++ +++..+|+|+.|+++.+|
T Consensus 322 erIa~~tGa~ii~~l~~---------------------------------------------l~~~~LG~~~~v~~~~ig 356 (526)
T cd03339 322 ELIAIATGGRIVPRFED---------------------------------------------LSPEKLGKAGLVREISFG 356 (526)
T ss_pred HHHHHHhCCEEecchhh---------------------------------------------CChhhcccCceEEEEEec
Confidence 99999999999998877 667789999999999999
Q ss_pred cccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhH
Q psy14623 413 TTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQ 492 (622)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~ 492 (622)
.+.++++||++|++++.+||+|||+|+.+++|++|+++|||+++++++++|++|||||++|++|+.+|++++...++.++
T Consensus 357 ~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~ 436 (526)
T cd03339 357 TTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQ 436 (526)
T ss_pred CCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHH
Confidence 65679999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHH
Q psy14623 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVK 572 (622)
Q Consensus 493 ~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~ 572 (622)
+++++|++||+.||++|++|||+|+.+++++|+..|.++++.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|+
T Consensus 437 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~ 516 (526)
T cd03339 437 YAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVK 516 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975556789999999999999999999999999999999999999
Q ss_pred HHHhhhheec
Q psy14623 573 MILKIDDIRS 582 (622)
Q Consensus 573 ~lL~iD~iI~ 582 (622)
+|||||++|.
T Consensus 517 ~iL~iD~ii~ 526 (526)
T cd03339 517 MILKIDDVIV 526 (526)
T ss_pred HHhhhceecC
Confidence 9999999874
No 2
>KOG0361|consensus
Probab=100.00 E-value=2.3e-106 Score=806.34 Aligned_cols=535 Identities=31% Similarity=0.490 Sum_probs=502.2
Q ss_pred CCceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHH
Q psy14623 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMV 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~ 94 (622)
..|++++++++ +...|.-++.+|++||..+++.++|||||+||+|+|++..|+++|||||+|||+.|++.||+|+.|+
T Consensus 3 ~~~ii~lkegt--d~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV 80 (543)
T KOG0361|consen 3 QPPIILLKEGT--DPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV 80 (543)
T ss_pred CCCEEEeeccc--CcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence 35678889984 5588888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCC--CChHHHHHHHH
Q psy14623 95 QLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNP--DNLEPLIKTAM 172 (622)
Q Consensus 95 ~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~--~~~~~L~~va~ 172 (622)
+++++||.++||||||||+|++++|+++.-+++.|+||..|+++|++|...|++.+++++..++... .-++.|.++|.
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~ 160 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA 160 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987665322 34778999999
Q ss_pred HhhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCC---Ccccccce
Q psy14623 173 TTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM---PKELRDVK 249 (622)
Q Consensus 173 tsl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~---~~~~~n~k 249 (622)
|+++||.+++..++|+++++||+..+. ...+.+.|-|+|++||+++||.+++|+.|.+.|++..| |+++.|||
T Consensus 161 T~lsSKlI~~ek~fF~~MvVDAV~~ld----~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~Npk 236 (543)
T KOG0361|consen 161 TALSSKLIRQEKEFFAKMVVDAVLTLD----NDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPK 236 (543)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHhhc----cccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCce
Confidence 999999999999999999999999885 23456779999999999999999999999999988766 89999999
Q ss_pred EEEecCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCc
Q psy14623 250 LAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGG 329 (622)
Q Consensus 250 i~ll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~ 329 (622)
|+++|..|+++.++.++++.+.++++++.+...||+.+.+.+++++.+|++||++.-.|.|.|.+||+.++|+|..||..
T Consensus 237 Il~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~ 316 (543)
T KOG0361|consen 237 ILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPE 316 (543)
T ss_pred EEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEE
Q psy14623 330 PDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREI 409 (622)
Q Consensus 330 ~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~ 409 (622)
+||.|+..+||+++.++..+ +.+..+|.|..|+++
T Consensus 317 eDl~Rv~~acGGsi~tt~~~---------------------------------------------i~~~~LG~C~~FeE~ 351 (543)
T KOG0361|consen 317 EDLNRVMQACGGSIQTTVSD---------------------------------------------IKEEVLGTCALFEER 351 (543)
T ss_pred HHHHHHHHhcCcchhhhhhh---------------------------------------------cchhhcchhhhHHHH
Confidence 99999999999999887766 788899999999999
Q ss_pred EeccccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccc
Q psy14623 410 SFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISS 489 (622)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~ 489 (622)
++| .++|.+|+||+..++||++|||+.++.++|.+|++|||++++|.++++.+||+|||++||++|++|++|+.++.+
T Consensus 352 QvG--~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~g 429 (543)
T KOG0361|consen 352 QVG--GERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAG 429 (543)
T ss_pred hhc--chhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCc
Confidence 999 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHH
Q psy14623 490 IEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQ 569 (622)
Q Consensus 490 ~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e 569 (622)
++|+.+.+|++|||.||++||+|+|+|..+++++||..|+. +..|||+|.+++.+.|+++.+||||..||++++..|+|
T Consensus 430 K~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~-G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aate 508 (543)
T KOG0361|consen 430 KQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQ-GEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATE 508 (543)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhc-CCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 57999999999999999999999999999999999999
Q ss_pred HHHHHHhhhheecCCCCCCchhhhhhhccCCcccc
Q psy14623 570 LVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVTA 604 (622)
Q Consensus 570 ~a~~lL~iD~iI~~~~~~~~~~~~~~~~~~~~~~~ 604 (622)
+|++||.+|+.|...+...+++.++ --+-+.++|
T Consensus 509 Aa~lIlsvDeTikn~~S~~~~p~~a-~rgrg~g~p 542 (543)
T KOG0361|consen 509 AACLILSVDETIKNPKSQSAPPSAA-GRGRGRGRP 542 (543)
T ss_pred hhhheEehhhhhcCCcccCCCCCcc-ccCCCCCCC
Confidence 9999999999999888766544443 233344443
No 3
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.2e-104 Score=882.21 Aligned_cols=526 Identities=73% Similarity=1.155 Sum_probs=494.4
Q ss_pred CCCceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHH
Q psy14623 14 FGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLM 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll 93 (622)
++.|..++++....+...|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll 86 (532)
T TIGR02343 7 YGRPFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLM 86 (532)
T ss_pred cCCCchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHH
Confidence 34454445552223568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHH
Q psy14623 94 VQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMT 173 (622)
Q Consensus 94 ~~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~t 173 (622)
++++++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++++..+..+++.|.++|+|
T Consensus 87 ~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t 166 (532)
T TIGR02343 87 VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKT 166 (532)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776555567899999999
Q ss_pred hhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEe
Q psy14623 174 TLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAIL 253 (622)
Q Consensus 174 sl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll 253 (622)
++++|+.+.+.++|++++++|+..+.+.....+|+++|+|++++|++++||++++|++|+++|.+++||+.++|+||+++
T Consensus 167 ~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~ 246 (532)
T TIGR02343 167 SLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAIL 246 (532)
T ss_pred hhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEE
Confidence 99999988899999999999999986433346888999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHH
Q psy14623 254 TCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIE 333 (622)
Q Consensus 254 ~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~ 333 (622)
+++|++++++++.++.+++++++..|.+.|+++++++++++++.|++|||++++|+|.+++||.++||.+++++++++|+
T Consensus 247 ~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~ 326 (532)
T TIGR02343 247 TCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELE 326 (532)
T ss_pred EeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHH
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEecc
Q psy14623 334 LIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGT 413 (622)
Q Consensus 334 ~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~ 413 (622)
|||++|||++++++++ +++..+|+|+.|+++.+|.
T Consensus 327 ~Ia~~tGa~~i~~l~~---------------------------------------------~~~~~LG~a~~v~~~~ig~ 361 (532)
T TIGR02343 327 LIAIATGGRIVPRFEE---------------------------------------------LSEDKLGKAGLVREISFGT 361 (532)
T ss_pred HHHHHhCCEEeccccc---------------------------------------------CCHhHCcccceEEEEEecC
Confidence 9999999999998877 7777899999999999996
Q ss_pred ccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHH
Q psy14623 414 TKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQY 493 (622)
Q Consensus 414 ~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~ 493 (622)
+.++++++++|++++.+||+|||+|+.+++|.+|+++||+++++++++++++|||||++|++|+++|++++...++++|+
T Consensus 362 ~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~ 441 (532)
T TIGR02343 362 TKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQY 441 (532)
T ss_pred CcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHH
Confidence 55689999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHH
Q psy14623 494 AFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKM 573 (622)
Q Consensus 494 ~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~ 573 (622)
++++|++||+.||++|++|||+|+.+++++|++.|..+++.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~ 521 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRM 521 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998755467899999999999999999999999999999999999999
Q ss_pred HHhhhheecCC
Q psy14623 574 ILKIDDIRSPN 584 (622)
Q Consensus 574 lL~iD~iI~~~ 584 (622)
||++|++|.++
T Consensus 522 iL~id~ii~~~ 532 (532)
T TIGR02343 522 ILKIDDVISPG 532 (532)
T ss_pred HHhHhhhccCC
Confidence 99999999753
No 4
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.1e-102 Score=868.12 Aligned_cols=510 Identities=44% Similarity=0.687 Sum_probs=484.2
Q ss_pred eccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhc
Q psy14623 21 LRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQ 100 (622)
Q Consensus 21 ~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~ 100 (622)
++++ .+...|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 5 ~~~~--~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 5 LKEG--TQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred ccCC--cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4444 35688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccc
Q psy14623 101 DDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKII 180 (622)
Q Consensus 101 ~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~ 180 (622)
++++||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|++++.+++ ..+++.|.++|+|+++||+.
T Consensus 83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~--~~~~~~L~~ia~tsl~sk~~ 160 (519)
T TIGR02339 83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKIS--PEDRDLLKKVAETSLTGKAS 160 (519)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccC--cccHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999976653 33578899999999999999
Q ss_pred -hhhHHHHHHHHHHHHHHhccc---ccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCC
Q psy14623 181 -NKCHRQMAEIAVNAVMAVADL---EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCP 256 (622)
Q Consensus 181 -~~~~~~la~lv~~Av~~v~~~---~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~ 256 (622)
+.+.++|++++++|+..+++. ....+|+++|+|++++|++++||++++|++|+++|.++.|++.++|+||++++++
T Consensus 161 ~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~ 240 (519)
T TIGR02339 161 AEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAP 240 (519)
T ss_pred cchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEecc
Confidence 789999999999999999742 2225788899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHH
Q psy14623 257 FEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIA 336 (622)
Q Consensus 257 l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia 336 (622)
|++++++.++++.+++++++..+.++|+++++++++++++.|++||+++++|++.++++|.++||.+++++++++|+|||
T Consensus 241 Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa 320 (519)
T TIGR02339 241 LEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLA 320 (519)
T ss_pred ccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccc
Q psy14623 337 IVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKD 416 (622)
Q Consensus 337 ~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~ 416 (622)
++|||++++++++ +++..+|+|+.|++..+| ++
T Consensus 321 ~~tGa~ii~~~~~---------------------------------------------l~~~~LG~~~~v~~~~ig--~~ 353 (519)
T TIGR02339 321 RATGAKIVSSIKE---------------------------------------------ITESDLGYAGLVEERKVG--DD 353 (519)
T ss_pred HHhCCEEeCchhh---------------------------------------------CChhhccCCceEEEEEEC--Ce
Confidence 9999999998776 667789999999999998 68
Q ss_pred eEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHH
Q psy14623 417 HMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFR 496 (622)
Q Consensus 417 ~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~ 496 (622)
+|++|++|..+..|||+|||+|+.+++|.+|+++||++++++++++|+||||||++|++|+.+|++++..++++++++++
T Consensus 354 ~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~ 433 (519)
T TIGR02339 354 KMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIE 433 (519)
T ss_pred EEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q psy14623 497 AFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILK 576 (622)
Q Consensus 497 ~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~ 576 (622)
+|++||+.||++|++|||+|+.+++.+|+..|..+ +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||
T Consensus 434 ~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~-~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 512 (519)
T TIGR02339 434 AFADALEEIPRILAENAGLDPIDALVELRAKHEKG-NKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILR 512 (519)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-CCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888743 56899999999999999999999999999999999999999999
Q ss_pred hhheec
Q psy14623 577 IDDIRS 582 (622)
Q Consensus 577 iD~iI~ 582 (622)
||++|.
T Consensus 513 id~ii~ 518 (519)
T TIGR02339 513 IDDVIA 518 (519)
T ss_pred HhHHhh
Confidence 999985
No 5
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-102 Score=865.51 Aligned_cols=513 Identities=34% Similarity=0.503 Sum_probs=483.1
Q ss_pred hcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCch
Q psy14623 29 RIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGT 108 (622)
Q Consensus 29 ~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGT 108 (622)
...|.+++..|++||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhc-cccccCCCCCChHHHHHHHHHhhcCccchhhHHHH
Q psy14623 109 TGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLET-IADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQM 187 (622)
Q Consensus 109 tt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~-~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~l 187 (622)
||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++ +++++ +..+++.|.++|+|+++||+.+.+.++|
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~~~~~~l~~ia~tsl~sK~~~~~~~~l 160 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISV--DNLGKESLINVAKTSMSSKIIGADSDFF 160 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCC--CccCHHHHHHHHHHHhcccccchhHHHH
Confidence 99999999999999999999999999999999999999999986 76655 3346888999999999999998889999
Q ss_pred HHHHHHHHHHhccc---ccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCC
Q psy14623 188 AEIAVNAVMAVADL---EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT 264 (622)
Q Consensus 188 a~lv~~Av~~v~~~---~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~ 264 (622)
++++++|+..++.. ....+|+++|+|++..|+++++|++++|++|++++.++.||+.++|+||++++++|++.+++.
T Consensus 161 s~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 161 ANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCcccc
Confidence 99999999998521 112478889999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeec
Q psy14623 265 KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIV 344 (622)
Q Consensus 265 ~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii 344 (622)
..++.++++++++.+.+.|+++++++++++.+.|++|||++++|++.+++||.+++|++++++++++|+|||++|||+++
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii 320 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLV 320 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEecc
Q psy14623 345 PRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEEC 424 (622)
Q Consensus 345 ~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~ 424 (622)
+++.+++.. +++++..+|+|+.|+++.+| +++|++|++|
T Consensus 321 ~~~~~l~~~---------------------------------------~~~~~~~LG~~~~v~~~~ig--~~~~~~i~g~ 359 (527)
T cd03335 321 STLANLEGE---------------------------------------ETFDPSYLGEAEEVVQERIG--DDELILIKGT 359 (527)
T ss_pred cChhhcCcc---------------------------------------cccCHhhCccCceEEEEEEC--CeEEEEEEcC
Confidence 988764211 12667789999999999998 6899999999
Q ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHH
Q psy14623 425 ENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALES 504 (622)
Q Consensus 425 ~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ 504 (622)
.+++.|||+|||+|+.+++|++|+++||++++++++++|++|||||++|++|+.+|+++++.+++++++++++|++||+.
T Consensus 360 ~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ 439 (527)
T cd03335 360 KKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLV 439 (527)
T ss_pred CCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhhcC-------CCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhh
Q psy14623 505 IPLALAENSGLSPIETLTEVKSRQVKEV-------NPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKI 577 (622)
Q Consensus 505 ip~~L~~NaG~d~~~il~~L~~~~~~~~-------~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~i 577 (622)
||++|++|||+|+.+++.+|++.|.++. +.++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||||
T Consensus 440 ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrI 519 (527)
T cd03335 440 IPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRI 519 (527)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998653 457999999999999999999999999999999999999999999
Q ss_pred hheecCC
Q psy14623 578 DDIRSPN 584 (622)
Q Consensus 578 D~iI~~~ 584 (622)
|++|...
T Consensus 520 D~ii~~~ 526 (527)
T cd03335 520 DDLIKLN 526 (527)
T ss_pred cceeecC
Confidence 9999764
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-101 Score=860.33 Aligned_cols=508 Identities=30% Similarity=0.463 Sum_probs=481.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDG 107 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDG 107 (622)
+...|.+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDG 89 (531)
T TIGR02347 10 ESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDG 89 (531)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHH
Q psy14623 108 TTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQM 187 (622)
Q Consensus 108 Ttt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~l 187 (622)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++.+++ +..+++.|.++|+|++++|+.+.++++|
T Consensus 90 TTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~-~~~~~~~l~~ia~tsl~sK~~~~~~~~l 168 (531)
T TIGR02347 90 TTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE-DEVDRELLLNVARTSLRTKLPIDLADQL 168 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhccccchhhHHHH
Confidence 999999999999999999999999999999999999999999999976543 1346789999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCce
Q psy14623 188 AEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267 (622)
Q Consensus 188 a~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~~ 267 (622)
++++++|+..+++.. ..+|+++|++.+..|++.+||++++|++|+++|.+|+||+.++|+||++++++|++.+++....
T Consensus 169 s~iv~~Av~~v~~~~-~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~ 247 (531)
T TIGR02347 169 TEIVVDAVLAIKKDG-EQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSG 247 (531)
T ss_pred HHHHHHHHHHHhhcC-CCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCce
Confidence 999999999997532 2477888999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHH
Q psy14623 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATG-------AT---LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAI 337 (622)
Q Consensus 268 ~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g-------~~---lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~ 337 (622)
+.+++++++..+.+.|++++...++++++.+ ++ ||+++++|++.+++||.++||.+++|+++++|+|||+
T Consensus 248 ~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~ 327 (531)
T TIGR02347 248 FFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTL 327 (531)
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHH
Confidence 9999999999999999999999999999876 25 9999999999999999999999999999999999999
Q ss_pred HhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccce
Q psy14623 338 VTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDH 417 (622)
Q Consensus 338 ~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~ 417 (622)
+|||++++++++ ++++.+|+|+.|+++.+| +++
T Consensus 328 ~tGa~~i~~l~~---------------------------------------------~~~~~LG~~~~v~~~~ig--~~~ 360 (531)
T TIGR02347 328 ACGGEALNSVED---------------------------------------------LTPECLGWAGLVYETSIG--EEK 360 (531)
T ss_pred HhCCEEeccccc---------------------------------------------CCccccccceEEEEEEEC--CeE
Confidence 999999988876 777889999999999998 689
Q ss_pred EEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHH
Q psy14623 418 MLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRA 497 (622)
Q Consensus 418 ~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~ 497 (622)
|++|++|.+++.|||+|||+|+.+++|++|+++||++++++++++|++||||||+|++|+.+|++++...++++|+++++
T Consensus 361 ~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~ 440 (531)
T TIGR02347 361 YTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEA 440 (531)
T ss_pred EEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhh
Q psy14623 498 FADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKI 577 (622)
Q Consensus 498 ~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~i 577 (622)
|++||+.||++|++|||+|+.+++.+|++.|..+ +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||||
T Consensus 441 fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrI 519 (531)
T TIGR02347 441 FANALLVIPKTLAENSGLDAQDTLVKLEDEHDEG-GEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLV 519 (531)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-CCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999988753 567999999999999999999999999999999999999999999
Q ss_pred hheecCCC
Q psy14623 578 DDIRSPND 585 (622)
Q Consensus 578 D~iI~~~~ 585 (622)
|++|...+
T Consensus 520 D~ii~~~~ 527 (531)
T TIGR02347 520 DEVMRAGR 527 (531)
T ss_pred HHHHhCcc
Confidence 99998654
No 7
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-101 Score=863.53 Aligned_cols=509 Identities=35% Similarity=0.577 Sum_probs=482.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDG 107 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDG 107 (622)
+...|.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDG 89 (525)
T TIGR02344 10 KRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (525)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHH
Q psy14623 108 TTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQM 187 (622)
Q Consensus 108 Ttt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~l 187 (622)
|||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++.+++ ..+++.|.++++|++++|..+.|.++|
T Consensus 90 Ttt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~--~~~~~~l~~i~~t~l~sk~~~~~~~~l 167 (525)
T TIGR02344 90 TTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVD--VNDDAAMLKLIQSCIGTKFVSRWSDLM 167 (525)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccC--CCCHHHHHHHHHHhhccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999976553 345778999999999999999999999
Q ss_pred HHHHHHHHHHhcccc---cCCCCccc-EEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCC
Q psy14623 188 AEIAVNAVMAVADLE---KRDVNFEL-IKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK 263 (622)
Q Consensus 188 a~lv~~Av~~v~~~~---~~~~~~~~-I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~ 263 (622)
++++++|+..+.+.. ...+|++. |+|++++|++++||++++|++|++++.++.|++.++|+||++++++|++.+++
T Consensus 168 s~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~ 247 (525)
T TIGR02344 168 CDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGE 247 (525)
T ss_pred HHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccccccccc
Confidence 999999999997532 12455543 89999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCee
Q psy14623 264 TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 343 (622)
Q Consensus 264 ~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~i 343 (622)
.++++.++++++++.+.+.|+++++++++++.+.|++||++++.|++.++++|.++||.+++++++++|+|||++|||++
T Consensus 248 ~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~i 327 (525)
T TIGR02344 248 SQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATI 327 (525)
T ss_pred ccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccc-cccEEEEEeccccceEEEEe
Q psy14623 344 VPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVREISFGTTKDHMLVIE 422 (622)
Q Consensus 344 i~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~ 422 (622)
++++++ ++++.+|+ |+.|+++.+| +++|++|+
T Consensus 328 i~~l~~---------------------------------------------l~~~~lG~~~~~v~~~~ig--~~~~~~~~ 360 (525)
T TIGR02344 328 VNRPEE---------------------------------------------LRESDVGTGCGLFEVKKIG--DEYFTFFT 360 (525)
T ss_pred ecchhh---------------------------------------------CCHhhcCCcCCEEEEEEEC--CeEEEEEE
Confidence 998876 66778999 9999999998 68999999
Q ss_pred ccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHH
Q psy14623 423 ECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADAL 502 (622)
Q Consensus 423 ~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL 502 (622)
+|.+++.|||+|||+|+.+++|++|+++||++++++++++++|||||||+|++||.+|++++..+++++++++++|++||
T Consensus 361 g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al 440 (525)
T TIGR02344 361 ECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADAL 440 (525)
T ss_pred cCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheec
Q psy14623 503 ESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRS 582 (622)
Q Consensus 503 ~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~ 582 (622)
+.||++|++|||+|+.+++++|+..|..+++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 441 ~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 520 (525)
T TIGR02344 441 EIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVS 520 (525)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 99999999999999999999999999765457899999999999999999999999999999999999999999999997
Q ss_pred CCC
Q psy14623 583 PND 585 (622)
Q Consensus 583 ~~~ 585 (622)
..+
T Consensus 521 ~~~ 523 (525)
T TIGR02344 521 GVK 523 (525)
T ss_pred cCC
Confidence 644
No 8
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.2e-101 Score=859.27 Aligned_cols=506 Identities=44% Similarity=0.685 Sum_probs=483.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDG 107 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDG 107 (622)
+..+|.+++..|++||..++++|++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 9 ~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 88 (517)
T cd03343 9 QRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDG 88 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHH
Q psy14623 108 TTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQM 187 (622)
Q Consensus 108 Ttt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~l 187 (622)
|||+++|+++|++++.++++.|+||..|++||++|++.+++.|++++.++.. .+++.|.++|+|++++|+.+.+.++|
T Consensus 89 Ttt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~~~~~l~~va~ts~~sk~~~~~~~~l 166 (517)
T cd03343 89 TTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDP--DDKDTLRKIAKTSLTGKGAEAAKDKL 166 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCC--CCHHHHHHHHHHhhcccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999776532 36789999999999999999999999
Q ss_pred HHHHHHHHHHhccccc--CCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCC
Q psy14623 188 AEIAVNAVMAVADLEK--RDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTK 265 (622)
Q Consensus 188 a~lv~~Av~~v~~~~~--~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~ 265 (622)
++++++|+..+++... ..+|+++|+|++++|++++||++++|++|+++|.+|+|++.++|+||++++++|++.+++.+
T Consensus 167 ~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~ 246 (517)
T cd03343 167 ADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEID 246 (517)
T ss_pred HHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccc
Confidence 9999999999975322 25788889999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeecc
Q psy14623 266 HNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVP 345 (622)
Q Consensus 266 ~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~ 345 (622)
+++.+++++++..+.+.|+++++++++++++.|++||+++++|++.+++||.++||.+++++++++|+|||++|||++++
T Consensus 247 ~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~ 326 (517)
T cd03343 247 AKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVT 326 (517)
T ss_pred eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEeccC
Q psy14623 346 RFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECE 425 (622)
Q Consensus 346 ~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~ 425 (622)
++++ +++..+|+|+.|++..+| +++|++|++|.
T Consensus 327 ~~~~---------------------------------------------l~~~~LG~~~~v~~~~ig--~~~~~~~~~~~ 359 (517)
T cd03343 327 NIDD---------------------------------------------LTPEDLGEAELVEERKVG--DDKMVFVEGCK 359 (517)
T ss_pred chhh---------------------------------------------CChhhCCccceEEEEEEC--CeEEEEEEcCC
Confidence 8876 667789999999999998 68999999999
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy14623 426 NSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESI 505 (622)
Q Consensus 426 ~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~i 505 (622)
+++.|||+|||+|+.+++|++|+++||++++++++++|+||||||++|++|+.+|++++...++++++++++|++||+.|
T Consensus 360 ~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~i 439 (517)
T cd03343 360 NPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEI 439 (517)
T ss_pred CCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecC
Q psy14623 506 PLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSP 583 (622)
Q Consensus 506 p~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~ 583 (622)
|++|++|||+|+.+++.+|++.|..+ +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|+.
T Consensus 440 p~~L~~NaG~d~~~~~~~l~~~h~~~-~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 440 PRTLAENAGLDPIDTLVELRAAHEKG-NKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcc-CCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 99999999999999999999888643 568999999999999999999999999999999999999999999999864
No 9
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-100 Score=854.78 Aligned_cols=513 Identities=32% Similarity=0.530 Sum_probs=483.7
Q ss_pred eeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhh
Q psy14623 20 ILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQS 99 (622)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~ 99 (622)
+++++ .+...|.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++
T Consensus 4 ~~~~~--~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 81 (522)
T cd03340 4 LLKEG--TDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKS 81 (522)
T ss_pred cccCC--cccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHH
Confidence 34444 2457788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCC--CChHHHHHHHHHhhcC
Q psy14623 100 QDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNP--DNLEPLIKTAMTTLGS 177 (622)
Q Consensus 100 ~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~--~~~~~L~~va~tsl~s 177 (622)
|++++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++++..++ .+++.|.++|+|+++|
T Consensus 82 q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~s 161 (522)
T cd03340 82 QDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNS 161 (522)
T ss_pred hHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999987664321 2467899999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCC---CcccccceEEEec
Q psy14623 178 KIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM---PKELRDVKLAILT 254 (622)
Q Consensus 178 k~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~---~~~~~n~ki~ll~ 254 (622)
|+.+.+.++|++++++|+..+++ .+|.++|+|+++.|++++||++++|++|+++|.+|+| |++++|+||++++
T Consensus 162 K~~~~~~~~l~~l~~~A~~~v~~----~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~ 237 (522)
T cd03340 162 KLIASEKEFFAKMVVDAVLSLDD----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLN 237 (522)
T ss_pred CcchhHHHHHHHHHHHHHHHhcc----cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEe
Confidence 99999999999999999999963 4567789999999999999999999999999998875 8889999999999
Q ss_pred CCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHH
Q psy14623 255 CPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIEL 334 (622)
Q Consensus 255 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ 334 (622)
+++++.+++.+..+.++++++++++.+.|++++.+.++++++.|++||+++++|+|.+++||.++||.+++++++++|+|
T Consensus 238 ~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~r 317 (522)
T cd03340 238 VELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKR 317 (522)
T ss_pred CCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccc
Q psy14623 335 IAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTT 414 (622)
Q Consensus 335 ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~ 414 (622)
||++|||++++++++ +++..+|+|+.|++..+|
T Consensus 318 Ia~~tGa~ii~~l~~---------------------------------------------l~~~~LG~~~~v~~~~ig-- 350 (522)
T cd03340 318 VAQATGGSIQTTVSN---------------------------------------------ITDDVLGTCGLFEERQVG-- 350 (522)
T ss_pred HHHHHCCEEeecccc---------------------------------------------CCccccccceEEEEEEEC--
Confidence 999999999998876 677789999999999998
Q ss_pred cceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHH
Q psy14623 415 KDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYA 494 (622)
Q Consensus 415 ~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~ 494 (622)
+++|++|++|..++.+||++||+++..++|.+|+++||++++++++++|+||||||++|++++.+|+++++..+++++++
T Consensus 351 ~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~ 430 (522)
T cd03340 351 GERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLV 430 (522)
T ss_pred CEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHH
Q psy14623 495 FRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMI 574 (622)
Q Consensus 495 ~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~l 574 (622)
+++||+||+.||++|++|||+|+.+++.+|++.|.++...++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|
T Consensus 431 ~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~i 510 (522)
T cd03340 431 INAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLI 510 (522)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998643268999999999999999999999999999999999999999
Q ss_pred HhhhheecCCC
Q psy14623 575 LKIDDIRSPND 585 (622)
Q Consensus 575 L~iD~iI~~~~ 585 (622)
|+||++|.+.+
T Consensus 511 L~id~ii~~~~ 521 (522)
T cd03340 511 LSVDETIKNPK 521 (522)
T ss_pred hhhhhheeCCC
Confidence 99999998743
No 10
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-100 Score=850.76 Aligned_cols=505 Identities=39% Similarity=0.626 Sum_probs=478.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCchh
Q psy14623 30 IIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTT 109 (622)
Q Consensus 30 ~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGTt 109 (622)
..+.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|||||
T Consensus 5 ~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTt 84 (517)
T TIGR02342 5 DKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTT 84 (517)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHHH
Q psy14623 110 GVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAE 189 (622)
Q Consensus 110 t~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la~ 189 (622)
|+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++.+++ ..+++.|.++|+|++++|+.+.+.++|++
T Consensus 85 t~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 162 (517)
T TIGR02342 85 SVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVD--LSDREILIKSATTSLSSKVVSQYSSLLAP 162 (517)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccC--ccCHHHHHHHHHHHhccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999976653 34678999999999999999999999999
Q ss_pred HHHHHHHHhccc-ccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCC-CCCCcccccceEEEecCCCCCCCCCCCce
Q psy14623 190 IAVNAVMAVADL-EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH-PQMPKELRDVKLAILTCPFEPPRPKTKHN 267 (622)
Q Consensus 190 lv~~Av~~v~~~-~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~-~~~~~~~~n~ki~ll~~~l~~~~~~~~~~ 267 (622)
++++|+..+++. ....+|+++|+|+++.|++.+||++++|++|+++|.+ +.||+.++|+||++++++|++.+++....
T Consensus 163 l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~ 242 (517)
T TIGR02342 163 LAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQ 242 (517)
T ss_pred HHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccce
Confidence 999999999752 1236788899999999999999999999999999998 48999999999999999999999988899
Q ss_pred eEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCC-----CHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGF-----DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 268 ~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I-----~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
+.++++++++++.++|+++++++++++++.|++||+++++| ++.++++|.++||.+++++++++|+|||++|||+
T Consensus 243 ~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ 322 (517)
T TIGR02342 243 VIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCK 322 (517)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCE
Confidence 99999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred eccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEe
Q psy14623 343 IVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIE 422 (622)
Q Consensus 343 ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~ 422 (622)
+++++++ +++..+|+|+.|+++.+| +++++++.
T Consensus 323 ii~~~~~---------------------------------------------l~~~~LG~~~~v~~~~~~--~~~~~~i~ 355 (517)
T TIGR02342 323 PIASIDH---------------------------------------------FTADKLGSAELVEEVTTD--GGKIIKIT 355 (517)
T ss_pred EEcchhh---------------------------------------------cCcccCcCCceEEEEEEC--CeEEEEEE
Confidence 9998876 667789999999998888 57899999
Q ss_pred ccCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHH
Q psy14623 423 ECEN-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADA 501 (622)
Q Consensus 423 ~~~~-~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~A 501 (622)
+|++ ++.+||+|||+|+.+++|++|+++||+++++++++++++|||||++|++||.+|++++...++.+|+++++|++|
T Consensus 356 ~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~a 435 (517)
T TIGR02342 356 GIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADA 435 (517)
T ss_pred ccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9987 489999999999999999999999999999999999889999999999999999999888889999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhhee
Q psy14623 502 LESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIR 581 (622)
Q Consensus 502 L~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI 581 (622)
|+.||++|++|||+|+.+++++|+..|.. ++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|
T Consensus 436 l~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii 514 (517)
T TIGR02342 436 LEVIPYTLAENAGLNPIDVVTELRNRHAN-GEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIV 514 (517)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhccccee
Confidence 99999999999999999999999999975 45689999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy14623 582 SPN 584 (622)
Q Consensus 582 ~~~ 584 (622)
.++
T Consensus 515 ~~~ 517 (517)
T TIGR02342 515 FTR 517 (517)
T ss_pred ecC
Confidence 763
No 11
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=4.9e-100 Score=849.59 Aligned_cols=513 Identities=36% Similarity=0.551 Sum_probs=482.6
Q ss_pred ceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecC-----CCCeEEeccHHHHhhhcccCChhHH
Q psy14623 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSS-----DGDVTVTNDGATILKLMDVDHEIAK 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~-----~g~~~ITnDG~tIl~~l~~~hP~ak 91 (622)
|..+++++ .+...|.+++..|+.||..++++|+|||||+||+|||+++ .|+++|||||+|||++|+++||+|+
T Consensus 7 ~~~~~~~~--~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ak 84 (533)
T PTZ00212 7 PPQVLKQG--AQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAK 84 (533)
T ss_pred chHHhcCC--cccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHH
Confidence 43455555 3467889999999999999999999999999999999998 5999999999999999999999999
Q ss_pred HHHHHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCC-CChHHHHHH
Q psy14623 92 LMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNP-DNLEPLIKT 170 (622)
Q Consensus 92 ll~~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~-~~~~~L~~v 170 (622)
|++++|++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++++..+. .+++.|.++
T Consensus 85 ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~v 164 (533)
T PTZ00212 85 ILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNI 164 (533)
T ss_pred HHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999977664321 236789999
Q ss_pred HHHhhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceE
Q psy14623 171 AMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKL 250 (622)
Q Consensus 171 a~tsl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki 250 (622)
|+|++++|+.+.+.++|++++++|+..+.+ .+++++|++++++|++++||++++|+++++++.+ .|++.++|+||
T Consensus 165 a~t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kI 239 (533)
T PTZ00212 165 ARTTLSSKLLTVEKDHFAKLAVDAVLRLKG----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKI 239 (533)
T ss_pred HHHHhcccccchhHHHHHHHHHHHHHHHhc----cCCccceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcE
Confidence 999999999999999999999999998853 4677889999999999999999999999999865 47999999999
Q ss_pred EEecCCCCCCCCCC-CceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCc
Q psy14623 251 AILTCPFEPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGG 329 (622)
Q Consensus 251 ~ll~~~l~~~~~~~-~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~ 329 (622)
++++++|++++++. ++++.+++++++..+.+.|++++++.++.|++.|++++++++.|++.++++|.++||.+++++++
T Consensus 240 ll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~ 319 (533)
T PTZ00212 240 LVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADF 319 (533)
T ss_pred EEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCH
Confidence 99999999999987 78888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEE
Q psy14623 330 PDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREI 409 (622)
Q Consensus 330 ~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~ 409 (622)
++++|||++|||++++++++ +++..+|+|+.|++.
T Consensus 320 ~~l~rIa~~tGa~iis~l~~---------------------------------------------~~~~~LG~~~~v~~~ 354 (533)
T PTZ00212 320 DGMERLAAALGAEIVSTFDT---------------------------------------------PEKVKLGHCDLIEEI 354 (533)
T ss_pred HHHHHHHHHhCCEEeecCCC---------------------------------------------CCHHHccCCceEEEE
Confidence 99999999999999998876 667789999999999
Q ss_pred EeccccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccc
Q psy14623 410 SFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISS 489 (622)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~ 489 (622)
.+| +++|++|++|..++.|||+|||+|+.+++|.||+++|||+++++++++|++||||||+|++|+.+|+++++..++
T Consensus 355 ~ig--~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~ 432 (533)
T PTZ00212 355 MIG--EDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEG 432 (533)
T ss_pred EEC--CeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCC
Confidence 998 689999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHH
Q psy14623 490 IEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQ 569 (622)
Q Consensus 490 ~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e 569 (622)
++++++++|++||+.||++|++|||+|+.+++.+|+..|..+ +.++|+|+.+|++.||++.|||||+.||+++|+.|+|
T Consensus 433 ~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~-~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e 511 (533)
T PTZ00212 433 KKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKG-NKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATE 511 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CCccceeccCCcccchhhccceecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999753 5789999999999999999999999999999999999
Q ss_pred HHHHHHhhhheecCC
Q psy14623 570 LVKMILKIDDIRSPN 584 (622)
Q Consensus 570 ~a~~lL~iD~iI~~~ 584 (622)
+|++|||||++|...
T Consensus 512 ~a~~iL~id~ii~~~ 526 (533)
T PTZ00212 512 AAEMILRVDDIIRCA 526 (533)
T ss_pred HHHHHHhhhHhhhcC
Confidence 999999999999875
No 12
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.9e-100 Score=845.29 Aligned_cols=504 Identities=35% Similarity=0.541 Sum_probs=477.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecC--CCCeEEeccHHHHhhhcccCChhHHHHHHHHhhcccccc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSS--DGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIG 105 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~--~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~G 105 (622)
+...|.+++..|+.||..++++|+|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|++++|
T Consensus 7 ~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~G 86 (517)
T cd03336 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVG 86 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhC
Confidence 457788999999999999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCC-CChHHHHHHHHHhhcCccchhhH
Q psy14623 106 DGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNP-DNLEPLIKTAMTTLGSKIINKCH 184 (622)
Q Consensus 106 DGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~-~~~~~L~~va~tsl~sk~~~~~~ 184 (622)
|||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++++..+. ++++.|.++|+|++++|+.+.++
T Consensus 87 DGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~ 166 (517)
T cd03336 87 DGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDK 166 (517)
T ss_pred CChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhH
Confidence 99999999999999999999999999999999999999999999999977664322 24678999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCC
Q psy14623 185 RQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT 264 (622)
Q Consensus 185 ~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~ 264 (622)
++|++++++|+..+.+ .+|+++|++++++|++++||++++|+++++++.+ .+++.++|+||++++++|++++++.
T Consensus 167 ~~l~~l~~~A~~~v~~----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~~ 241 (517)
T cd03336 167 EHFAELAVDAVLRLKG----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIKI 241 (517)
T ss_pred HHHHHHHHHHHHHhhc----cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCcccccc
Confidence 9999999999999852 5677889999999999999999999999998765 4689999999999999999999887
Q ss_pred -CceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCee
Q psy14623 265 -KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 343 (622)
Q Consensus 265 -~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~i 343 (622)
++++.+++++++..+.+.|+++++++++.|++.|++++++++.|++.+++||.++||.+++++++++|+|||++|||++
T Consensus 242 ~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~i 321 (517)
T cd03336 242 FGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEI 321 (517)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEec
Q psy14623 344 VPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEE 423 (622)
Q Consensus 344 i~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~ 423 (622)
++++++ +++..+|+|+.|++..+| +++|++|++
T Consensus 322 i~~l~~---------------------------------------------~~~~~LG~~~~v~~~~ig--~~~~~~~~~ 354 (517)
T cd03336 322 ASTFDH---------------------------------------------PELVKLGTCKLIEEIMIG--EDKLIRFSG 354 (517)
T ss_pred ecccCC---------------------------------------------CCcccccccceEEEEEEC--CeEEEEEEc
Confidence 998876 677789999999999998 789999999
Q ss_pred cCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHH
Q psy14623 424 CENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALE 503 (622)
Q Consensus 424 ~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~ 503 (622)
|++++.|||+|||+|+.+++|.+|+++||++++++++++|++|||||++|++|+.+|++++++.++++++++++|++||+
T Consensus 355 ~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe 434 (517)
T cd03336 355 VAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALR 434 (517)
T ss_pred cCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecC
Q psy14623 504 SIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSP 583 (622)
Q Consensus 504 ~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~ 583 (622)
.||++|++|||+|+.+++++|+..|.. ++.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++||++|++|..
T Consensus 435 ~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 513 (517)
T cd03336 435 QLPTIIADNAGYDSAELVAQLRAAHYN-GNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKC 513 (517)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhc
Confidence 999999999999999999999999975 3578999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy14623 584 N 584 (622)
Q Consensus 584 ~ 584 (622)
.
T Consensus 514 ~ 514 (517)
T cd03336 514 A 514 (517)
T ss_pred C
Confidence 4
No 13
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.6e-100 Score=847.83 Aligned_cols=504 Identities=40% Similarity=0.630 Sum_probs=478.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCchh
Q psy14623 30 IIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTT 109 (622)
Q Consensus 30 ~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGTt 109 (622)
..+.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTt 83 (515)
T cd03338 4 EKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTT 83 (515)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHHH
Q psy14623 110 GVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAE 189 (622)
Q Consensus 110 t~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la~ 189 (622)
|+++|+++|++++.+++++|+||..|++||+.|++.++++|++++.+++. .+++.|.++|+|++++|+.+.++++|++
T Consensus 84 t~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~--~~~~~l~~va~ts~~sK~~~~~~~~ls~ 161 (515)
T cd03338 84 SVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDL--NDRESLIKSATTSLNSKVVSQYSSLLAP 161 (515)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999766543 3578899999999999999999999999
Q ss_pred HHHHHHHHhccccc-CCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCC-CCcccccceEEEecCCCCCCCCCCCce
Q psy14623 190 IAVNAVMAVADLEK-RDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQ-MPKELRDVKLAILTCPFEPPRPKTKHN 267 (622)
Q Consensus 190 lv~~Av~~v~~~~~-~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~-~~~~~~n~ki~ll~~~l~~~~~~~~~~ 267 (622)
++++|+.++++... ..+|+++|+|.+..|++++||++++|++|+++|.+++ +|+.++|+|+++++++|++.+++....
T Consensus 162 li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~ 241 (515)
T cd03338 162 IAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNN 241 (515)
T ss_pred HHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCce
Confidence 99999999975432 4688899999999999999999999999999999986 499999999999999999999988888
Q ss_pred eEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCC-----CHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGF-----DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 268 ~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I-----~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
+.++++++++++.++|+++++++++++++.|++|||++++| ++.++++|.++||.+++++++++|+|||++|||+
T Consensus 242 ~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ 321 (515)
T cd03338 242 IVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCK 321 (515)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCE
Confidence 88999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred eccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEe
Q psy14623 343 IVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIE 422 (622)
Q Consensus 343 ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~ 422 (622)
+++++++ +++..+|+|+.|++..+| ++++++++
T Consensus 322 ii~sl~~---------------------------------------------l~~~~LG~~~~v~~~~~g--~~~~~~i~ 354 (515)
T cd03338 322 PVASIDH---------------------------------------------FTEDKLGSADLVEEVSLG--DGKIVKIT 354 (515)
T ss_pred Eeccccc---------------------------------------------CCHhhCCCCceEEEEEEC--CeEEEEEE
Confidence 9998877 666789999999999998 57899999
Q ss_pred ccCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHH
Q psy14623 423 ECEN-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADA 501 (622)
Q Consensus 423 ~~~~-~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~A 501 (622)
+|.+ ++.|||+|||+|+.+++|++|+++||++++++++++|++|||||++|++|+.+|++++...++++|+++++|++|
T Consensus 355 ~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~a 434 (515)
T cd03338 355 GVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADA 434 (515)
T ss_pred ecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 9987 699999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhhee
Q psy14623 502 LESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIR 581 (622)
Q Consensus 502 L~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI 581 (622)
|+.||++|++|||+|+.+++.+|+..|.. ++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|
T Consensus 435 l~~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii 513 (515)
T cd03338 435 LEVIPYTLAENAGLNPISIVTELRNRHAQ-GEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513 (515)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999999999999999999999999874 35689999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy14623 582 SP 583 (622)
Q Consensus 582 ~~ 583 (622)
.+
T Consensus 514 ~~ 515 (515)
T cd03338 514 LA 515 (515)
T ss_pred cC
Confidence 64
No 14
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.3e-100 Score=848.58 Aligned_cols=515 Identities=34% Similarity=0.500 Sum_probs=483.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDG 107 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDG 107 (622)
+...|.+++..|++||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhcc-ccccCCCCCChHHHHHHHHHhhcCccchhhHHH
Q psy14623 108 TTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETI-ADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQ 186 (622)
Q Consensus 108 Ttt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~-s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~ 186 (622)
|||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|++. ++++ +..+.+.|.++|+|++++|+.+.++++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~--~~~~~~~l~~va~tsl~sK~~~~~~~~ 163 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSV--DELGREALINVAKTSMSSKIIGLDSDF 163 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCC--CcccHHHHHHHHHHHhccccchhhHHH
Confidence 9999999999999999999999999999999999999999999874 5554 334678899999999999999999999
Q ss_pred HHHHHHHHHHHhccc---ccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCC
Q psy14623 187 MAEIAVNAVMAVADL---EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK 263 (622)
Q Consensus 187 la~lv~~Av~~v~~~---~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~ 263 (622)
|++++++|+..++.. ....+|+++|+++++.|++++||++++|++|+++|.++.|++.++|+||++++++|++.+++
T Consensus 164 ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~ 243 (536)
T TIGR02340 164 FSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMA 243 (536)
T ss_pred HHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCccc
Confidence 999999999998631 12247888999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCee
Q psy14623 264 TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 343 (622)
Q Consensus 264 ~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~i 343 (622)
...++.++++.+++.+.+.|++++.+.++.|++.+++||+++++|++.+++||.+++|.+++|+++++|+|||++|||++
T Consensus 244 ~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~i 323 (536)
T TIGR02340 244 LGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTL 323 (536)
T ss_pred CceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEec
Q psy14623 344 VPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEE 423 (622)
Q Consensus 344 i~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~ 423 (622)
++++.+++.. +++++..+|+|+.|+++.+| +++|++|++
T Consensus 324 i~~~~~l~~~---------------------------------------~~~~~~~LG~~~~v~~~~ig--~~~~~~i~~ 362 (536)
T TIGR02340 324 VSTLADLEGE---------------------------------------ETFDASYLGFADEVVEERIA--DDECILIKG 362 (536)
T ss_pred ecchhhcCcc---------------------------------------ccccccccccCceEEEEEEC--CeEEEEEEc
Confidence 9988663211 12667789999999999998 789999999
Q ss_pred cCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHH
Q psy14623 424 CENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALE 503 (622)
Q Consensus 424 ~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~ 503 (622)
|..++.+||+|||+|+.+++|++|+++||++++++++++|+||||||++|++|+.+|++++..+++++++++++|++||+
T Consensus 363 ~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~ 442 (536)
T TIGR02340 363 TKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALL 442 (536)
T ss_pred CCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhhcC-------CCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q psy14623 504 SIPLALAENSGLSPIETLTEVKSRQVKEV-------NPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILK 576 (622)
Q Consensus 504 ~ip~~L~~NaG~d~~~il~~L~~~~~~~~-------~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~ 576 (622)
.||++|++|||+|+.+++.+|++.|.++. +.++|||+.+|++.||++.|||||+.+|+++|+.|+|+|++|||
T Consensus 443 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ 522 (536)
T TIGR02340 443 IIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILR 522 (536)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887642 45799999999999999999999999999999999999999999
Q ss_pred hhheecCCC
Q psy14623 577 IDDIRSPND 585 (622)
Q Consensus 577 iD~iI~~~~ 585 (622)
||++|...+
T Consensus 523 ID~ii~~~~ 531 (536)
T TIGR02340 523 IDDLIKLNP 531 (536)
T ss_pred hhhhhhcCC
Confidence 999998753
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-99 Score=843.95 Aligned_cols=512 Identities=34% Similarity=0.521 Sum_probs=483.5
Q ss_pred eeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhh
Q psy14623 20 ILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQS 99 (622)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~ 99 (622)
+++++ .+...|.+++..|+.||..++++|+|||||+||+|||+++.| ++|||||+|||++|+++||+++|+++++++
T Consensus 6 ~~~~~--~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~ 82 (522)
T TIGR02345 6 LLKEG--TDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKS 82 (522)
T ss_pred hhcCC--cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHH
Confidence 34554 356888999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCC-CChHHHHHHHHHhhcCc
Q psy14623 100 QDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNP-DNLEPLIKTAMTTLGSK 178 (622)
Q Consensus 100 ~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~-~~~~~L~~va~tsl~sk 178 (622)
|++++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++++...+ .+++.|.++|+|+++||
T Consensus 83 q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK 162 (522)
T TIGR02345 83 QDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSK 162 (522)
T ss_pred HHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999987765321 24678999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCC---CcccccceEEEecC
Q psy14623 179 IINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM---PKELRDVKLAILTC 255 (622)
Q Consensus 179 ~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~---~~~~~n~ki~ll~~ 255 (622)
+.+.++++|++++++|+..+++ +.+|+++|+|+++.|++++||++++|++|+++|.+|+| |+.++|+||+++++
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~---~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 163 LIAHEKEFFSKMIVDAVLQLDI---DDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 239 (522)
T ss_pred cccchHHHHHHHHHHHHHHHhh---ccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec
Confidence 9999999999999999999963 25788889999999999999999999999999999876 88899999999999
Q ss_pred CCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHH
Q psy14623 256 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELI 335 (622)
Q Consensus 256 ~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~i 335 (622)
++++.+.+.+..+.++++++++++.+.|++++.+.++++.+.|+++|+++++|++.+++||.+++|.++++++.++++++
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEecccc
Q psy14623 336 AIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTK 415 (622)
Q Consensus 336 a~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~ 415 (622)
+++|||++++++++ +++..+|+|+.|+++.+| +
T Consensus 320 a~~tga~ii~~~~~---------------------------------------------l~~~~LG~~~~ie~~~~~--~ 352 (522)
T TIGR02345 320 VKACGGSIQSTTSD---------------------------------------------LEADVLGTCALFEERQIG--S 352 (522)
T ss_pred HHHhCCeEEcchhh---------------------------------------------CChhhccCCceEEEEEEC--C
Confidence 99999999999876 677789999999999998 7
Q ss_pred ceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHH
Q psy14623 416 DHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAF 495 (622)
Q Consensus 416 ~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~ 495 (622)
++|++|++|++++.|||+|||+|+.+++|.+|+++||+++++++++++++|||||++|++|+.+|++++...++++++++
T Consensus 353 ~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i 432 (522)
T TIGR02345 353 ERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLII 432 (522)
T ss_pred eEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 89999999998999999999999999999999999999999999999889999999999999999998888899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHH
Q psy14623 496 RAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMIL 575 (622)
Q Consensus 496 ~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL 575 (622)
++|++||+.||++|++|||+|+.+++.+|+..|..+ +.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++||
T Consensus 433 ~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~-~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 511 (522)
T TIGR02345 433 EAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKG-GKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTIL 511 (522)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988753 5679999999999999999999999999999999999999999
Q ss_pred hhhheecCCC
Q psy14623 576 KIDDIRSPND 585 (622)
Q Consensus 576 ~iD~iI~~~~ 585 (622)
++|++|...+
T Consensus 512 ~id~ii~~~~ 521 (522)
T TIGR02345 512 SIDETIMNPK 521 (522)
T ss_pred hHHHHHhCCC
Confidence 9999998753
No 16
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-98 Score=837.54 Aligned_cols=504 Identities=29% Similarity=0.489 Sum_probs=474.3
Q ss_pred hcccH-HHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCc
Q psy14623 29 RIIGN-DAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDG 107 (622)
Q Consensus 29 ~~~g~-~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDG 107 (622)
...|. +++..|+.||..|+++|+|||||+||+|||++++|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 12 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDG 91 (531)
T TIGR02346 12 HMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDG 91 (531)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCC
Confidence 35554 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhcccc-ccCCCCCChHHHHHHHHHhhcCccchhhHHH
Q psy14623 108 TTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIAD-SFPVNPDNLEPLIKTAMTTLGSKIINKCHRQ 186 (622)
Q Consensus 108 Ttt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~-~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~ 186 (622)
|||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|++++. +++ +..+++.|.++++|++++|+.+. +++
T Consensus 92 TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~-~~~~~~~l~~i~~tsl~sK~~~~-~~~ 169 (531)
T TIGR02346 92 TNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVE-DVRNKKELIKALKASISSKQYGN-EDF 169 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC-CCCCHHHHHHHHHHHhccccCch-HHH
Confidence 999999999999999999999999999999999999999999999875 443 33467889999999999999988 999
Q ss_pred HHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCc
Q psy14623 187 MAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKH 266 (622)
Q Consensus 187 la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~ 266 (622)
|++++++|+..+++.....+|+++|+|+++.|++++||++++|++|++++. .+|+.++|+||+++++|+++.+++...
T Consensus 170 ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~~~ 247 (531)
T TIGR02346 170 LAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTETKG 247 (531)
T ss_pred HHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccCce
Confidence 999999999999754333678889999999999999999999999999954 468999999999999999999999888
Q ss_pred eeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeeccC
Q psy14623 267 NLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPR 346 (622)
Q Consensus 267 ~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~ 346 (622)
.+.++++.++.++.+.|+++++++++++++.|++|||++++|+|.++++|.++||.++++++..+|+|||.+|||+++++
T Consensus 248 ~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~ 327 (531)
T TIGR02346 248 TVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLAR 327 (531)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEeccC-
Q psy14623 347 FEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECE- 425 (622)
Q Consensus 347 ~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~- 425 (622)
+++ ++++++|+|+.|++..+| +++|.+|+++.
T Consensus 328 l~~---------------------------------------------~~~~~LG~a~~v~~~~ig--~~~~~~i~~~~~ 360 (531)
T TIGR02346 328 LGA---------------------------------------------PQPEEIGYVDSVYVSEIG--GQKVTVFKQENG 360 (531)
T ss_pred ccc---------------------------------------------CCHhHccccceEEEEEEC--CEEEEEEEccCC
Confidence 776 667789999999999998 67899999887
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy14623 426 NSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESI 505 (622)
Q Consensus 426 ~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~i 505 (622)
.++.+||+|||+|+.+++|++|+++||++++++++++|++||||||+|++|+.+|++++..+++++++++++|++||+.|
T Consensus 361 ~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~i 440 (531)
T TIGR02346 361 DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEII 440 (531)
T ss_pred CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCc--ccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecC
Q psy14623 506 PLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNG--TNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSP 583 (622)
Q Consensus 506 p~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~--~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~ 583 (622)
|++|++|||+|+.+++.+|+..|.. ++.++|+|+.+|+ +.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 441 p~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (531)
T TIGR02346 441 PRTLAENAGLNPNEVIPKLYAAHKK-GNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMA 519 (531)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc-cCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 9999999999999999999998874 3568999999999 599999999999999999999999999999999999987
Q ss_pred C
Q psy14623 584 N 584 (622)
Q Consensus 584 ~ 584 (622)
.
T Consensus 520 ~ 520 (531)
T TIGR02346 520 K 520 (531)
T ss_pred C
Confidence 5
No 17
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.2e-98 Score=833.00 Aligned_cols=505 Identities=34% Similarity=0.530 Sum_probs=476.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCC--CCeEEeccHHHHhhhcccCChhHHHHHHHHhhcccccc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSD--GDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIG 105 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~--g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~G 105 (622)
+..++.+++..|+.|+..++++|+|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++|++++|
T Consensus 8 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~G 87 (519)
T TIGR02341 8 QEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVG 87 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhC
Confidence 4577889999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCC-CChHHHHHHHHHhhcCccchhhH
Q psy14623 106 DGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNP-DNLEPLIKTAMTTLGSKIINKCH 184 (622)
Q Consensus 106 DGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~-~~~~~L~~va~tsl~sk~~~~~~ 184 (622)
|||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++++..+. .+++.|.++|+|++++|+.+.+.
T Consensus 88 DGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~ 167 (519)
T TIGR02341 88 DGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHK 167 (519)
T ss_pred CchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999977664322 24678999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCC
Q psy14623 185 RQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT 264 (622)
Q Consensus 185 ~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~ 264 (622)
+.|++++++|+..+.+ ..|.++|++.+++|++++||++++|+++++.+.+ .+|+.++|+||++++++|++.+++.
T Consensus 168 ~~~s~l~~~av~~i~~----~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~~ 242 (519)
T TIGR02341 168 DHFAQLAVDAVLRLKG----SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVKV 242 (519)
T ss_pred HHHHHHHHHHHHHhcc----CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCcccc
Confidence 9999999999999842 2366779999999999999999999999999765 5788999999999999999999886
Q ss_pred -CceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCee
Q psy14623 265 -KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 343 (622)
Q Consensus 265 -~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~i 343 (622)
.+++.+++++++..+.+.|++++.++++.|++.|++++++++.|++.++++|.+++|.+++++++.+|+|||++|||++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~i 322 (519)
T TIGR02341 243 FGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEI 322 (519)
T ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEec
Q psy14623 344 VPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEE 423 (622)
Q Consensus 344 i~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~ 423 (622)
++++++ +++..+|+|+.|++..+| +++|++|++
T Consensus 323 i~~~~~---------------------------------------------~~~~~lG~~~~v~~~~ig--~~~~~~~~~ 355 (519)
T TIGR02341 323 VSTFDH---------------------------------------------PELVKLGSCDLIEEIMIG--EDKLLKFSG 355 (519)
T ss_pred eccccc---------------------------------------------CCccccccCceEEEEEEC--CEEEEEEEc
Confidence 998776 677789999999999998 789999999
Q ss_pred cCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHH
Q psy14623 424 CENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALE 503 (622)
Q Consensus 424 ~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~ 503 (622)
|+.++.|||+|||+|+.+++|.+|+++||+++++++++++++||||||+|++|+.+|++++++.++++++++++|++||+
T Consensus 356 ~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale 435 (519)
T TIGR02341 356 VKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALR 435 (519)
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecC
Q psy14623 504 SIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSP 583 (622)
Q Consensus 504 ~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~ 583 (622)
.||++|++|||+|+.+++.+|+..|..+ +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++||+||++|..
T Consensus 436 ~ip~~La~NaG~d~~~~l~~l~~~h~~~-~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 514 (519)
T TIGR02341 436 QLPTIIADNAGFDSAELVAQLRAAHYNG-NHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKA 514 (519)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcC-CCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999999999753 568999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy14623 584 ND 585 (622)
Q Consensus 584 ~~ 585 (622)
.+
T Consensus 515 ~~ 516 (519)
T TIGR02341 515 AP 516 (519)
T ss_pred CC
Confidence 54
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3e-98 Score=826.12 Aligned_cols=478 Identities=31% Similarity=0.481 Sum_probs=451.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDG 107 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDG 107 (622)
+...|.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDG 85 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDG 85 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHH
Q psy14623 108 TTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQM 187 (622)
Q Consensus 108 Ttt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~l 187 (622)
|||+++|+++||+++.++++.|+||+.|++||++|++.++++|++++.+++.+ .+++.|.++|++++++|+.+.+.++|
T Consensus 86 TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~~~~~l~~va~ts~~sk~~~~~~~~l 164 (484)
T cd03342 86 TTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEID-TDRELLLSVARTSLRTKLHADLADQL 164 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCHHHHHHHHHHHhCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999998766432 36789999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCce
Q psy14623 188 AEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267 (622)
Q Consensus 188 a~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~~ 267 (622)
++++++|+..+++.. ..+|+++|+|+++.|++.+||++++|++|+++|.+|+|+++++|+||++++++|++.+++....
T Consensus 165 ~~l~~~A~~~v~~~~-~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~ 243 (484)
T cd03342 165 TEIVVDAVLAIYKPD-EPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSG 243 (484)
T ss_pred HHHHHHHHHHHhhcC-CccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcE
Confidence 999999999997532 3688889999999999999999999999999999999999999999999999999988776554
Q ss_pred eEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeeccCc
Q psy14623 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRF 347 (622)
Q Consensus 268 ~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~ 347 (622)
+.+ +|||++++|++.++++|.++||.+++++++++|+|||++|||++++++
T Consensus 244 ~~~-----------------------------~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l 294 (484)
T cd03342 244 FFY-----------------------------SVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSV 294 (484)
T ss_pred EEE-----------------------------EEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEeccc
Confidence 433 299999999999999999999999999999999999999999999988
Q ss_pred cchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEeccCCC
Q psy14623 348 EELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENS 427 (622)
Q Consensus 348 ~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~ 427 (622)
++ +++..+|+|+.|+++.+| +++|+++++|+.+
T Consensus 295 ~~---------------------------------------------~~~~~LG~~~~v~~~~ig--~~~~~~i~~~~~~ 327 (484)
T cd03342 295 DD---------------------------------------------LSPECLGYAGLVYERTLG--EEKYTFIEGVKNP 327 (484)
T ss_pred cc---------------------------------------------CChhhCcccceEEEEEEC--CeEEEEEECCCCC
Confidence 77 777789999999999998 6789999999999
Q ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q psy14623 428 KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPL 507 (622)
Q Consensus 428 ~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~ 507 (622)
+.+||+|||+|+.+++|.+|+++||++++++++++|++||||||+|++|+.+|++++...++++|+++++|++||+.||+
T Consensus 328 ~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~ 407 (484)
T cd03342 328 KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPK 407 (484)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCC
Q psy14623 508 ALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPN 584 (622)
Q Consensus 508 ~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~ 584 (622)
+|++|||+|+.+++.+|+..|.++ +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...
T Consensus 408 ~La~NaG~d~~~~l~~l~~~h~~~-~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 408 TLAENSGLDVQETLVKLQDEYAEG-GQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHcc-CCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 999999999999999999888754 5689999999999999999999999999999999999999999999999764
No 19
>KOG0358|consensus
Probab=100.00 E-value=4.7e-98 Score=745.55 Aligned_cols=504 Identities=39% Similarity=0.630 Sum_probs=478.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCchh
Q psy14623 30 IIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTT 109 (622)
Q Consensus 30 ~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGTt 109 (622)
.+..+.|.+||+|++.+++.++|||||+||||||+++.|+++|||||+|||+.|++-||+++||++++..||.++|||||
T Consensus 22 ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTT 101 (534)
T KOG0358|consen 22 EKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTT 101 (534)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCce
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHHH
Q psy14623 110 GVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAE 189 (622)
Q Consensus 110 t~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la~ 189 (622)
|+|+|+++||+.+.+|+++|+||+.|.+.|+.|.+.++++|.+++.+++. ++++.|.+-|.|+|+||++++++..++.
T Consensus 102 sVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~vel--sdre~Li~~atTsLnSKvvSq~s~llap 179 (534)
T KOG0358|consen 102 SVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVEL--SDRESLIKSATTSLNSKVVSQYSSLLAP 179 (534)
T ss_pred EEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCccc--CcHHHHHHHHHhHhhHHHHHhhccccch
Confidence 99999999999999999999999999999999999999999999877655 4789999999999999999999999999
Q ss_pred HHHHHHHHhcc-cccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCcee
Q psy14623 190 IAVNAVMAVAD-LEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNL 268 (622)
Q Consensus 190 lv~~Av~~v~~-~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~~~ 268 (622)
+.++|+.++.+ ....+.|+++|+|.|..||.++|+++++|++|++......-|++++++||.++.+.+.++|+.+..++
T Consensus 180 mAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~i 259 (534)
T KOG0358|consen 180 MAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQI 259 (534)
T ss_pred HHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccce
Confidence 99999999864 33456888999999999999999999999999988765557999999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCC-----CHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCee
Q psy14623 269 DVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGF-----DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 343 (622)
Q Consensus 269 ~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I-----~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~i 343 (622)
.++++.+++++.++|++|+.++++++++.|++|+++|++| +|.+++||.+.+|+++..+.++|+|.+++..|+.+
T Consensus 260 iv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~P 339 (534)
T KOG0358|consen 260 IVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKP 339 (534)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCee
Confidence 9999999999999999999999999999999999999876 99999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEe-ccccceEEEEe
Q psy14623 344 VPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISF-GTTKDHMLVIE 422 (622)
Q Consensus 344 i~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~-g~~~~~~~~~~ 422 (622)
+.+++. +++..+|+++.+++... | +.++..+.
T Consensus 340 ia~id~---------------------------------------------f~~d~Lg~adlveE~~~~G--~gkivk~t 372 (534)
T KOG0358|consen 340 IADIDH---------------------------------------------FTADKLGSADLVEETDSSG--EGKIVKIT 372 (534)
T ss_pred cchhhh---------------------------------------------cChhhcCcchhhhhcccCC--CccEEEEE
Confidence 999887 78888999999998733 4 45888888
Q ss_pred ccCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHH
Q psy14623 423 ECEN-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADA 501 (622)
Q Consensus 423 ~~~~-~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~A 501 (622)
|+.+ ++.++|++||++.-.++|.+|++|||||++|+.++.+.++||||+.|+.+|..|.+++....+.+.+++++||+|
T Consensus 373 g~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~A 452 (534)
T KOG0358|consen 373 GIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADA 452 (534)
T ss_pred EeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 8877 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhhee
Q psy14623 502 LESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIR 581 (622)
Q Consensus 502 L~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI 581 (622)
||.||.+|++|||++|+.++++||+.|.. +..+.|++++.|.+.||++..|+.|+.|-.+++..|+|++++||+||+|+
T Consensus 453 lEvIP~tLAeNAGLnpI~~VtELRn~haq-ge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv 531 (534)
T KOG0358|consen 453 LEVIPYTLAENAGLNPIATVTELRNRHAQ-GEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIV 531 (534)
T ss_pred HhcccHhHHhhCCCChhhHHHHHHHHHhc-CCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999999999984 56889999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy14623 582 SP 583 (622)
Q Consensus 582 ~~ 583 (622)
.+
T Consensus 532 ~a 533 (534)
T KOG0358|consen 532 NA 533 (534)
T ss_pred cc
Confidence 65
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4e-96 Score=809.07 Aligned_cols=465 Identities=37% Similarity=0.611 Sum_probs=438.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDG 107 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDG 107 (622)
+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 89 (480)
T cd03337 10 KRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (480)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHH
Q psy14623 108 TTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQM 187 (622)
Q Consensus 108 Ttt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~l 187 (622)
|||+++|+++||+++.+++++|+||+.|++||+.|++.++++|++++++++ ..+++.|.++++|++++|+.+.|.+.|
T Consensus 90 Ttt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~--~~~~~~l~~i~~t~l~sK~~~~~~~~l 167 (480)
T cd03337 90 TTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVD--VNDRAQMLKIIKSCIGTKFVSRWSDLM 167 (480)
T ss_pred cchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHhccCcchhHHHHH
Confidence 999999999999999999999999999999999999999999999976553 346788999999999999999999999
Q ss_pred HHHHHHHHHHhcccc-cC--CCCcc-cEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCC
Q psy14623 188 AEIAVNAVMAVADLE-KR--DVNFE-LIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK 263 (622)
Q Consensus 188 a~lv~~Av~~v~~~~-~~--~~~~~-~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~ 263 (622)
++++++|+..+++.. .. .+|++ +|+|++++|++.+||++++|++|++++.++.|++.++|+||++++++|++
T Consensus 168 s~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~---- 243 (480)
T cd03337 168 CNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY---- 243 (480)
T ss_pred HHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce----
Confidence 999999999997532 11 35554 49999999999999999999999999999999999999999999999876
Q ss_pred CCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCee
Q psy14623 264 TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 343 (622)
Q Consensus 264 ~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~i 343 (622)
||+++++|++.++++|.++||.+++++++++|+|||++|||++
T Consensus 244 -------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~i 286 (480)
T cd03337 244 -------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATI 286 (480)
T ss_pred -------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccc-cccEEEEEeccccceEEEEe
Q psy14623 344 VPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVREISFGTTKDHMLVIE 422 (622)
Q Consensus 344 i~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~ 422 (622)
++++++ ++++.+|+ |+.++++.+| +++++||+
T Consensus 287 i~~~~~---------------------------------------------l~~~~LG~~~~~~~~~~~~--~~~~~~i~ 319 (480)
T cd03337 287 VNRPEE---------------------------------------------LTESDVGTGAGLFEVKKIG--DEYFTFIT 319 (480)
T ss_pred ecchhh---------------------------------------------CCHHHcCCcccEEEEEEeC--CeEEEEEE
Confidence 999776 66778999 6777777777 67899999
Q ss_pred ccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHH
Q psy14623 423 ECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADAL 502 (622)
Q Consensus 423 ~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL 502 (622)
+|++.+.|||+|||+|+.+++|.+|+++||+++++++++++++|||||++|++||.+|++++...++++++++++|++||
T Consensus 320 ~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al 399 (480)
T cd03337 320 ECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASAL 399 (480)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheec
Q psy14623 503 ESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRS 582 (622)
Q Consensus 503 ~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~ 582 (622)
+.||++|++|||+|+.+++.+|++.|.++.+.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 400 ~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 400 EVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 99999999999999999999999999865356899999999999999999999999999999999999999999999984
No 21
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.3e-93 Score=782.11 Aligned_cols=464 Identities=32% Similarity=0.491 Sum_probs=434.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCchhh
Q psy14623 31 IGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTG 110 (622)
Q Consensus 31 ~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGTtt 110 (622)
.+.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHHHH
Q psy14623 111 VVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEI 190 (622)
Q Consensus 111 ~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la~l 190 (622)
+++|+++||+++.+++++|+||+.|++||+.|++.+++.|++++.+...+..+.+.+.++++|++++|..+ +.++|+++
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~l 163 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSPL 163 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHHH
Confidence 99999999999999999999999999999999999999999987542223346788999999999999987 69999999
Q ss_pred HHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCceeEe
Q psy14623 191 AVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDV 270 (622)
Q Consensus 191 v~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~~~~i 270 (622)
+++|+..+++.....+++++|+|++++|++.+||++++|++|++.+. .+++.++|+||++++++|++
T Consensus 164 ~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~----------- 230 (472)
T cd03341 164 VAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI----------- 230 (472)
T ss_pred HHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC-----------
Confidence 99999999754334678889999999999999999999999987654 34588899999999999886
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeeccCccch
Q psy14623 271 QSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEEL 350 (622)
Q Consensus 271 ~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~l 350 (622)
|++||+++++|++.++++|.++||.+++++++++|+|||++|||++++++++
T Consensus 231 ---------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~- 282 (472)
T cd03341 231 ---------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGA- 282 (472)
T ss_pred ---------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc-
Confidence 8999999999999999999999999999999999999999999999998776
Q ss_pred hhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEeccCC-Cce
Q psy14623 351 TSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECEN-SKA 429 (622)
Q Consensus 351 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~-~~~ 429 (622)
+++..+|+|+.|++..+| +++|++|++|.. ++.
T Consensus 283 --------------------------------------------l~~~~lG~~~~v~~~~ig--~~~~~~~~~~~~~~~~ 316 (472)
T cd03341 283 --------------------------------------------PTPEEIGYCDSVYVEEIG--DTKVVVFRQNKEDSKI 316 (472)
T ss_pred --------------------------------------------CCHhHCCCceEEEEEEEC--CeeEEEEEccCCCCCe
Confidence 667789999999999998 689999999987 899
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHH
Q psy14623 430 VTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLAL 509 (622)
Q Consensus 430 ~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L 509 (622)
+||+|||+|+.+++|+||+++||++++++++++|++|||||++|++++.+|++++...++++++++++|++||+.||++|
T Consensus 317 ~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L 396 (472)
T cd03341 317 ATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTL 396 (472)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HhhcCCChHHHHHHHHHHhhhcCCCceEEEccCC--cccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecC
Q psy14623 510 AENSGLSPIETLTEVKSRQVKEVNPALGIDCMLN--GTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSP 583 (622)
Q Consensus 510 ~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g--~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~ 583 (622)
++|||+|+.+++.+|+..|.++ +.++|+|+.+| ++.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 397 ~~NaG~d~~~~~~~l~~~h~~~-~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 397 AENAGLDATEVLSELYAAHQKG-NKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred HHHCCCCHHHHHHHHHHHHHcc-CCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999988753 56899999999 9999999999999999999999999999999999999865
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.1e-92 Score=779.32 Aligned_cols=462 Identities=46% Similarity=0.692 Sum_probs=439.1
Q ss_pred hcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCch
Q psy14623 29 RIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGT 108 (622)
Q Consensus 29 ~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGT 108 (622)
..++.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHH
Q psy14623 109 TGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMA 188 (622)
Q Consensus 109 tt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la 188 (622)
||+++|+++|++++.+++++|+||+.|++||+.|++.+++.|++++.++ +..+++.|.++++|++++|+.+.|+++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~--~~~~~~~l~~ia~tsl~sK~~~~~~~~l~ 160 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPI--DVEDREELLKVATTSLNSKLVSGGDDFLG 160 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc--CCCCHHHHHHHhHhcccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999997664 33478899999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCcee
Q psy14623 189 EIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNL 268 (622)
Q Consensus 189 ~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~~~ 268 (622)
+++++|+..+++... .++.+.|+|++++|++++||++++|++|+++|.+|+|++.++|+||++++++|++
T Consensus 161 ~l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~--------- 230 (464)
T cd00309 161 ELVVDAVLKVGKENG-DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY--------- 230 (464)
T ss_pred HHHHHHHHHhccccC-ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce---------
Confidence 999999999975332 4667789999999999999999999999999999999999999999999999986
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeeccCcc
Q psy14623 269 DVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFE 348 (622)
Q Consensus 269 ~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~ 348 (622)
||+++++|++.++++|.++||.+++++++++|+|||++|||+++++++
T Consensus 231 --------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~ 278 (464)
T cd00309 231 --------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLE 278 (464)
T ss_pred --------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccc
Confidence 899999999999999999999999999999999999999999999876
Q ss_pred chhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEeccCCCc
Q psy14623 349 ELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSK 428 (622)
Q Consensus 349 ~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~ 428 (622)
+ +++..+|+|+.|++..+| ++++++|.++..++
T Consensus 279 ~---------------------------------------------~~~~~lG~~~~v~~~~~g--~~~~~~~~~~~~~~ 311 (464)
T cd00309 279 D---------------------------------------------LTPEDLGTAGLVEETKIG--DEKYTFIEGCKGGK 311 (464)
T ss_pred c---------------------------------------------CCcccCccccEEEEEEEc--CeeEEEEEecCCCC
Confidence 6 667789999999999998 67899999998899
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Q psy14623 429 AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLA 508 (622)
Q Consensus 429 ~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~ 508 (622)
.|||+|||+|+.+++|++|+++||++++++++++|++|||||++|++|+++|++++...++++++++++|++||+.||++
T Consensus 312 ~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~ 391 (464)
T cd00309 312 VATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRT 391 (464)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999888999999999999999999999
Q ss_pred HHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheec
Q psy14623 509 LAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRS 582 (622)
Q Consensus 509 L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~ 582 (622)
|++|||+|+.+++.+|+..|.+ +..++|+|..+|++.||++.|||||+.||+++|+.|+|+|++||+||++|.
T Consensus 392 L~~NaG~d~~~~~~~l~~~~~~-~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 392 LAENAGLDPIEVVTKLRAKHAE-GGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHcCCCHHHHHHHHHHHhhc-cCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 9999999999999999998875 356789999999999999999999999999999999999999999999874
No 23
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-92 Score=771.22 Aligned_cols=504 Identities=37% Similarity=0.548 Sum_probs=470.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccC
Q psy14623 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGD 106 (622)
Q Consensus 27 ~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GD 106 (622)
+...+|.+++..|+.|+..++++||+||||+||+|||+++.|+++|||||+|||++|+++||.|+|++++|++||+++||
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GD 83 (524)
T COG0459 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGD 83 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcC
Confidence 45688999999999999999999999999999999999997799999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHH
Q psy14623 107 GTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQ 186 (622)
Q Consensus 107 GTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~ 186 (622)
||||++||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++..+. .+. +++.|++++|..+++ ++
T Consensus 84 GTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~--~~~--~~~~t~v~sk~~~~~-~~ 158 (524)
T COG0459 84 GTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE--EEL--KIAITSVASKSANSD-EE 158 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch--hhh--hhhhheeeeeeccCh-HH
Confidence 9999999999999999999999999999999999999999999999987776432 222 889999999998886 99
Q ss_pred HHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCC-C-cccccceEEEecCCCCCCCCCC
Q psy14623 187 MAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM-P-KELRDVKLAILTCPFEPPRPKT 264 (622)
Q Consensus 187 la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~-~-~~~~n~ki~ll~~~l~~~~~~~ 264 (622)
+++++++|+.++++... |++.|.+.+..|+...|+++++|++|+++|.+|+| | +.++||+|++++++|++.+++.
T Consensus 159 i~~lv~~Av~~v~~~~~---d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l 235 (524)
T COG0459 159 IGELVVEAVEKVGKEQS---DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPEL 235 (524)
T ss_pred HHHHHHHHHHHhccccc---ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccC
Confidence 99999999999974322 67889999999999999999999999997766654 6 6889999999999999999999
Q ss_pred CceeEecCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEEecCCCHHHHHHHHHCCCcEEeecCcccH-HHHHHHhCC
Q psy14623 265 KHNLDVQSVEDYKELRKYEQ-EKFASMVDKVKATGAT-LAICQWGFDDEANHLLLQKQLPAVRWVGGPDI-ELIAIVTGG 341 (622)
Q Consensus 265 ~~~~~i~~~~~l~~~~~~e~-~~i~~~v~~l~~~g~~-lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L-~~ia~~tGa 341 (622)
+.++.++++.+|..|.+.|+ +.+...++++.+.+.+ +++++++|+|.+++||.+.+|++++++.++++ ++|++++||
T Consensus 236 ~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga 315 (524)
T COG0459 236 PLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGA 315 (524)
T ss_pred cceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCc
Confidence 99999999999999999999 9999999999999999 99999999999999999999999999999999 899999999
Q ss_pred eeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccc--cccEEEEEeccccceEE
Q psy14623 342 RIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGK--AGLVREISFGTTKDHML 419 (622)
Q Consensus 342 ~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~--~~~v~~~~~g~~~~~~~ 419 (622)
.+++.+.+ +++..+|. |+.+++..+| ++.+.
T Consensus 316 ~~v~~~~d---------------------------------------------~t~~~~G~~~~~~ve~~~~~--~~~~~ 348 (524)
T COG0459 316 KIVSVLKD---------------------------------------------LTTIVLGEGAAGLVEETKTG--DYDME 348 (524)
T ss_pred eEEeeccc---------------------------------------------CceeecCccccceEEEeecc--chhhh
Confidence 99988877 77778898 9999999888 78899
Q ss_pred EEeccCC--CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccc-hhHHHHH
Q psy14623 420 VIEECEN--SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISS-IEQYAFR 496 (622)
Q Consensus 420 ~~~~~~~--~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~-~~~~~~~ 496 (622)
+|++|.. ++.|||++||+|+.+++|.+|+++|||+++++++++|++|||||++|++++..|++++...++ ++|++++
T Consensus 349 ~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~ 428 (524)
T COG0459 349 KLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIE 428 (524)
T ss_pred hhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHH
Confidence 9999986 789999999999999999999999999999999999999999999999999999988544555 9999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcc-cccccCCcccchHHHHHHHHHHHHHHHHHH
Q psy14623 497 AFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGT-NDMKQQNVIEALRSKKQQILLSTQLVKMIL 575 (622)
Q Consensus 497 ~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~-~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL 575 (622)
+|++||+.||++|++|||+|+.+++.+|++.|. ..++|+|+.+|++ .||++.|||||+.||+++|+.|+|+|.+||
T Consensus 429 ~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~---~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL 505 (524)
T COG0459 429 AFARALEAPPRQLAENAGLDPIEVLSKLRSAHA---TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLL 505 (524)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc---CCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999764 3569999999999 779999999999999999999999999999
Q ss_pred hhhheecCCCCCC
Q psy14623 576 KIDDIRSPNDGIC 588 (622)
Q Consensus 576 ~iD~iI~~~~~~~ 588 (622)
++|++|...++..
T Consensus 506 ~~d~iI~~~~~~~ 518 (524)
T COG0459 506 TIDDIIAAKPEEK 518 (524)
T ss_pred HHHHhhccCCccc
Confidence 9999999988765
No 24
>KOG0363|consensus
Probab=100.00 E-value=5.4e-92 Score=698.96 Aligned_cols=515 Identities=36% Similarity=0.557 Sum_probs=482.3
Q ss_pred ceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecC--CCCeEEeccHHHHhhhcccCChhHHHHH
Q psy14623 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSS--DGDVTVTNDGATILKLMDVDHEIAKLMV 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~--~g~~~ITnDG~tIl~~l~~~hP~akll~ 94 (622)
|+.+++++. ...+|+.++.+.|.++-.+.++|||||||+||+||++.. .|.+.+||||+|||+++.+.+|+||+|+
T Consensus 3 p~~i~~~~~--~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv 80 (527)
T KOG0363|consen 3 PVQIFKDGA--TEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLV 80 (527)
T ss_pred hhhhhcccc--hhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhhee
Confidence 555666663 447899999999999999999999999999999999875 4679999999999999999999999999
Q ss_pred HHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCC-CCChHHHHHHHHH
Q psy14623 95 QLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVN-PDNLEPLIKTAMT 173 (622)
Q Consensus 95 ~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~-~~~~~~L~~va~t 173 (622)
+.++.||.++|||||||++|+++||++|.+|+...+||+.|++||+.|...|.+.|.+.++.-..+ ...++.|.++|+|
T Consensus 81 ~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 81 DISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIART 160 (527)
T ss_pred ccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998875432222 1348899999999
Q ss_pred hhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEe
Q psy14623 174 TLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAIL 253 (622)
Q Consensus 174 sl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll 253 (622)
.|+||+++++.++|++++++|+.++. ..-|++.|+|+|+.||+++||++-+|+++++.+-. +-|++++|+||++-
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLk----Gs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iLIA 235 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLK----GSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIA 235 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhc----CCCCccceeeehhcCCccccccccccceeccccCC-CCcccccccceEEe
Confidence 99999999999999999999999984 34467789999999999999999999999988753 45899999999999
Q ss_pred cCCCCCCCCCC-CceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccH
Q psy14623 254 TCPFEPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDI 332 (622)
Q Consensus 254 ~~~l~~~~~~~-~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L 332 (622)
|.+++..|.+. .+.+.+.+...+.++...|++.++..++++.++|+|+.|..+-|.++-.++|...+|+.+.....+-+
T Consensus 236 NT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGi 315 (527)
T KOG0363|consen 236 NTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGI 315 (527)
T ss_pred cCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhH
Confidence 99999998887 56788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEec
Q psy14623 333 ELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFG 412 (622)
Q Consensus 333 ~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g 412 (622)
||++.+||+.+++.|++ ++...+|+|+.+++..+|
T Consensus 316 ERLalvtGGeI~STFd~---------------------------------------------p~~~klG~C~~IeeimiG 350 (527)
T KOG0363|consen 316 ERLALVTGGEIVSTFDN---------------------------------------------PELVKLGECDLIEEIMIG 350 (527)
T ss_pred HHHhhcccceeeeccCC---------------------------------------------cchhccccchhhHHHhcC
Confidence 99999999999999887 777889999999999999
Q ss_pred cccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhH
Q psy14623 413 TTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQ 492 (622)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~ 492 (622)
+++++.|.||+.+..|||+|||.|++.+||.+|++|||||++...+++.+++.||||.||..+..+.+++.+.++++.
T Consensus 351 --ed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea 428 (527)
T KOG0363|consen 351 --EDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEA 428 (527)
T ss_pred --ccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHH
Q psy14623 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVK 572 (622)
Q Consensus 493 ~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~ 572 (622)
.++.+|++||..+|.+|+.|+|+|+.+++++||+.|.+ +...+|+|..+|++.||.+.||+|++.+|.+.+..|.|+|.
T Consensus 429 ~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~-g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae 507 (527)
T KOG0363|consen 429 LAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYN-GRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAE 507 (527)
T ss_pred HHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhc-CCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999985 56889999999999999999999999999999999999999
Q ss_pred HHHhhhheecCCCC
Q psy14623 573 MILKIDDIRSPNDG 586 (622)
Q Consensus 573 ~lL~iD~iI~~~~~ 586 (622)
+|||+|.||...+-
T Consensus 508 ~ilrvD~Iik~aPR 521 (527)
T KOG0363|consen 508 MILRVDNIIKAAPR 521 (527)
T ss_pred HHHhhhhhhhcCCc
Confidence 99999999987654
No 25
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.2e-90 Score=763.84 Aligned_cols=478 Identities=24% Similarity=0.367 Sum_probs=432.9
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCCh----hHHHHHHHHhhccc
Q psy14623 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDD 102 (622)
Q Consensus 27 ~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP----~akll~~~a~~~~~ 102 (622)
++..+|.+++..|++|++.++++|+|||||+||+|||+++.|+++|||||+|||++|+++|| +++++++++++|++
T Consensus 3 ~~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~ 82 (542)
T PRK00013 3 KDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 82 (542)
T ss_pred chhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCc
Confidence 35678999999999999999999999999999999999999999999999999999999999 69999999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchh
Q psy14623 103 EIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINK 182 (622)
Q Consensus 103 ~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~ 182 (622)
++||||||+++|+++||+++.++++.|+||..|++||+.|++.++++|++++++++ +.+.|.++|.|++++
T Consensus 83 e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~----~~~~l~~va~ts~~~----- 153 (542)
T PRK00013 83 VAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE----DKEEIAQVATISANG----- 153 (542)
T ss_pred ccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHhcccc-----
Confidence 99999999999999999999999999999999999999999999999999987653 577899999998763
Q ss_pred hHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCC-------CcccccceEEEecC
Q psy14623 183 CHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM-------PKELRDVKLAILTC 255 (622)
Q Consensus 183 ~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~-------~~~~~n~ki~ll~~ 255 (622)
++++++++++|+..+++. . .|.|++..| ...+|++++|++|+++|.+|+| ++.++|++|+++++
T Consensus 154 -~~~ls~lv~~Av~~v~~~---g----~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~ 224 (542)
T PRK00013 154 -DEEIGKLIAEAMEKVGKE---G----VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDK 224 (542)
T ss_pred -hHHHHHHHHHHHHHhCcC---C----cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcC
Confidence 899999999999998632 2 288887676 7789999999999999999987 67789999999998
Q ss_pred CCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCC------CcEEeecC-
Q psy14623 256 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQ------LPAVRWVG- 328 (622)
Q Consensus 256 ~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~------I~~i~~v~- 328 (622)
. +++++++ .++++++.+.|++|||++++|++.++++|..++ |.++++++
T Consensus 225 ~-------------i~~~~~l-----------~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~ 280 (542)
T PRK00013 225 K-------------ISNIQDL-----------LPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGF 280 (542)
T ss_pred c-------------cCCHHHH-----------HHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCc
Confidence 4 4566676 688999999999999999999999999999997 77888775
Q ss_pred ----cccHHHHHHHhCCeecc-----CccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccc
Q psy14623 329 ----GPDIELIAIVTGGRIVP-----RFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEK 399 (622)
Q Consensus 329 ----~~~L~~ia~~tGa~ii~-----~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (622)
+++|+|||++|||++++ ++++ ++++.
T Consensus 281 ~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~---------------------------------------------~~~~~ 315 (542)
T PRK00013 281 GDRRKAMLEDIAILTGGTVISEELGLKLED---------------------------------------------ATLED 315 (542)
T ss_pred ccchhhhHHHHHHHcCCEEecccccCCccc---------------------------------------------CCHHH
Confidence 88999999999999998 3433 77788
Q ss_pred ccccccEEEEEeccccceEEEEeccCCCc-----------------------------------eEEEEEeCCCHHHHHH
Q psy14623 400 LGKAGLVREISFGTTKDHMLVIEECENSK-----------------------------------AVTIFIRGGNKMIIEE 444 (622)
Q Consensus 400 lG~~~~v~~~~~g~~~~~~~~~~~~~~~~-----------------------------------~~TIll~G~t~~~l~E 444 (622)
+|+|+.|++. .+++++|++|.+++ .+||+|||+|+.+++|
T Consensus 316 LG~~~~v~~~-----~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E 390 (542)
T PRK00013 316 LGQAKKVVVT-----KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKE 390 (542)
T ss_pred CCeeeEEEEe-----cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 9999999974 47899999887654 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q psy14623 445 AKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEV 524 (622)
Q Consensus 445 ~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L 524 (622)
++|+++||++++++++++| +|||||++|++|+.+|+++ .+.++++|+++++|++||+.||++|++|||+|+.+++++|
T Consensus 391 ~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l 468 (542)
T PRK00013 391 KKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKV 468 (542)
T ss_pred HHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999998 9999999999999999988 6788999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCCCchhhhhhhccCCccc
Q psy14623 525 KSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVT 603 (622)
Q Consensus 525 ~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~~~~~~~ 603 (622)
+..| +.++|+|+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|...++ .++.++.-..+||++|
T Consensus 469 ~~~~----~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~-~~~~~~~~~~~~~~~~ 542 (542)
T PRK00013 469 KNGK----GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPE-KKAAAPPMGGGGMGGM 542 (542)
T ss_pred Hhhc----CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCCCCCCCCCCCC
Confidence 9877 367999999999999999999999999999999999999999999999988553 3333333344677765
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=6.6e-90 Score=765.51 Aligned_cols=483 Identities=38% Similarity=0.593 Sum_probs=457.8
Q ss_pred HHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCchhhHHHHHHHHHHHHHHH
Q psy14623 46 IANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHL 125 (622)
Q Consensus 46 la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~l 125 (622)
|+++|++||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||||+++|+++||+++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHHhcccccCC
Q psy14623 126 LDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRD 205 (622)
Q Consensus 126 i~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~ 205 (622)
+++|+||..|++||+.|++.+++.|++++++++.+ .+.|.++++|++++|+.+.|.++|++++++|+..+.+ .
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~---~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~----~ 153 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINND---DESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS----N 153 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTST---SHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT----T
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhcccccc---chhhhhhhcccccccccccchhhhhhhHHHHHHhhcc----c
Confidence 99999999999999999999999999998776543 1899999999999999999999999999999954431 2
Q ss_pred CCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCceeEecCHHHHHHHHHHHHH
Q psy14623 206 VNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQE 285 (622)
Q Consensus 206 ~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~ 285 (622)
+|+++++++++.|++.+||++++|++|++++.++.|+++++++||++++++|++.+. .+.++.++++++++.+.++|++
T Consensus 154 ~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 232 (485)
T PF00118_consen 154 FDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKK 232 (485)
T ss_dssp HHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHH
T ss_pred ccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhh
Confidence 667779999999999999999999999999999999999999999999999999988 8899999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeeccCccchhhhhhcccccCcccc
Q psy14623 286 KFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFW 365 (622)
Q Consensus 286 ~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~ 365 (622)
+++++++++.+.|++||+++++|++.++++|.++||.+++++++++|++|+++|||.+++++++
T Consensus 233 ~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~---------------- 296 (485)
T PF00118_consen 233 YLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDD---------------- 296 (485)
T ss_dssp HHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGG----------------
T ss_pred hhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEeccccc----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEe--ccCCCceEEEEEeCCCHHHHH
Q psy14623 366 YNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIE--ECENSKAVTIFIRGGNKMIIE 443 (622)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~--~~~~~~~~TIll~G~t~~~l~ 443 (622)
++++.+|+|+.+++..+| +++|++++ +|..++.+||+|||+++.+++
T Consensus 297 -----------------------------l~~~~lG~~~~v~~~~i~--~~~~~~~~~~~~~~~~~~Till~g~t~~~l~ 345 (485)
T PF00118_consen 297 -----------------------------LSDEDLGFCKSVEEREIG--NKKYIFIEGIGCLSSKICTILLRGPTEFELE 345 (485)
T ss_dssp -----------------------------STGGGSEEEEEEEEEEET--SSEEEEEEEHSESSSSEEEEEEEESSHHHHH
T ss_pred -----------------------------ccchhhhhhhhhhhcccc--cccccccccccccccCceEEEeccccchhHH
Confidence 666779999999999998 78999999 588899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q psy14623 444 EAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTE 523 (622)
Q Consensus 444 E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~ 523 (622)
|++++++||+++++++++++++|||||++|++|+++|++++...++++++++++|++||+.||++|++|||+|+.+++++
T Consensus 346 e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~ 425 (485)
T PF00118_consen 346 ERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISK 425 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehh
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCC
Q psy14623 524 VKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPND 585 (622)
Q Consensus 524 L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~ 585 (622)
|+..|. .+.++|+|+.+|++.||.+.|||||+.+|+++|+.|+|+|++||+||++|.+.+
T Consensus 426 l~~~h~--~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 426 LKSFHN--NGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHH--STTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred hHhhhc--cccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999885 345999999999999999999999999999999999999999999999998753
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.2e-89 Score=756.23 Aligned_cols=466 Identities=24% Similarity=0.361 Sum_probs=421.4
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCCh----hHHHHHHHHhhccc
Q psy14623 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDD 102 (622)
Q Consensus 27 ~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP----~akll~~~a~~~~~ 102 (622)
+...+|.+++..|++|++.++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|++++++|++|++
T Consensus 3 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 82 (542)
T PRK12849 3 KIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTND 82 (542)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchh
Q psy14623 103 EIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINK 182 (622)
Q Consensus 103 ~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~ 182 (622)
++||||||+++|+++||+++.++++.|+||..|++||+.|++.+++.|++++++++ +.+.|.++|+|+++.
T Consensus 83 e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~----~~~~l~~va~ts~~~----- 153 (542)
T PRK12849 83 VAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS----GSEEIAQVATISANG----- 153 (542)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcCC-----
Confidence 99999999999999999999999999999999999999999999999999987653 577899999998764
Q ss_pred hHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccc-eeEEeeEEEeecCCCCCC-------CcccccceEEEec
Q psy14623 183 CHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLED-TMLVKGVVIDKDFSHPQM-------PKELRDVKLAILT 254 (622)
Q Consensus 183 ~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~d-S~li~Giv~~~~~~~~~~-------~~~~~n~ki~ll~ 254 (622)
++++++++++|+..+++. .. +.+. .|++.+| +++++|++|+++|.+|+| ++.++|++|++++
T Consensus 154 -~~~l~~lv~~Av~~v~~~--g~-----i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 223 (542)
T PRK12849 154 -DEEIGELIAEAMEKVGKD--GV-----ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223 (542)
T ss_pred -hHHHHHHHHHHHHHhccC--Cc-----EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeec
Confidence 899999999999998632 12 4444 5888886 799999999999999987 6778999999998
Q ss_pred CCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHC------CCcEEeecC
Q psy14623 255 CPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQK------QLPAVRWVG 328 (622)
Q Consensus 255 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~------~I~~i~~v~ 328 (622)
+. +++++++ .++++++.+.+++|||++++|++.|+++|.++ +|.++++++
T Consensus 224 ~~-------------i~~~~~~-----------~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~ 279 (542)
T PRK12849 224 KK-------------ISSLQDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 279 (542)
T ss_pred CC-------------cCCHHHH-----------HHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCC
Confidence 84 3456665 67899999999999999999999999999999 899999877
Q ss_pred -----cccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccccccc
Q psy14623 329 -----GPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKA 403 (622)
Q Consensus 329 -----~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~ 403 (622)
+++|+|||++|||+++++...+ +++++++.++|+|
T Consensus 280 ~~~~r~~~l~~ia~~tGa~~v~~~~~~----------------------------------------~~~~~~~~~LG~~ 319 (542)
T PRK12849 280 FGDRRKAMLEDIAILTGGTVISEDLGL----------------------------------------KLEEVTLDDLGRA 319 (542)
T ss_pred ccchhHhHHHHHHHHhCCEEecccccC----------------------------------------CcccCCHHHCcee
Confidence 4559999999999999842210 1122777889999
Q ss_pred ccEEEEEeccccceEEEEeccCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHH
Q psy14623 404 GLVREISFGTTKDHMLVIEECENS-----------------------------------KAVTIFIRGGNKMIIEEAKRS 448 (622)
Q Consensus 404 ~~v~~~~~g~~~~~~~~~~~~~~~-----------------------------------~~~TIll~G~t~~~l~E~~~~ 448 (622)
+.|++. .++++++++|.++ +.+||+|||+|+.+++|++|+
T Consensus 320 ~~v~~~-----~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~ 394 (542)
T PRK12849 320 KRVTIT-----KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDR 394 (542)
T ss_pred eEEEEe-----eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHH
Confidence 999973 4788899888764 589999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHh
Q psy14623 449 IHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQ 528 (622)
Q Consensus 449 l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~ 528 (622)
++||++++++++++| ||||||++|++++.+|++++ ..++++|+++++|++||+.||++|++|||+|+.+++++|++.|
T Consensus 395 i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~ 472 (542)
T PRK12849 395 VEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE 472 (542)
T ss_pred HHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC
Confidence 999999999999998 99999999999999999998 8899999999999999999999999999999999999998764
Q ss_pred hhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCC
Q psy14623 529 VKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGI 587 (622)
Q Consensus 529 ~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~ 587 (622)
.++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||++|++|...++.
T Consensus 473 -----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 526 (542)
T PRK12849 473 -----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEE 526 (542)
T ss_pred -----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence 469999999999999999999999999999999999999999999999875543
No 28
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.2e-88 Score=753.95 Aligned_cols=483 Identities=22% Similarity=0.341 Sum_probs=431.4
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChh----HHHHHHHHhhccc
Q psy14623 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDD 102 (622)
Q Consensus 27 ~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~----akll~~~a~~~~~ 102 (622)
+...+|.+++..|++||+.++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ ++|++++|++|++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~ 83 (544)
T PRK12850 4 KEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTND 83 (544)
T ss_pred ceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcc
Confidence 355788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchh
Q psy14623 103 EIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINK 182 (622)
Q Consensus 103 ~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~ 182 (622)
++||||||+++|+++||+++.++++.|+||..|++||+.|++.++++|++++.+++ +.+.|.+++++++++
T Consensus 84 e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~----~~~~l~~va~~s~~~----- 154 (544)
T PRK12850 84 LAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT----SSKEIAQVATISANG----- 154 (544)
T ss_pred hhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcCC-----
Confidence 99999999999999999999999999999999999999999999999999987663 577899999999876
Q ss_pred hHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCC-------CcccccceEEEecC
Q psy14623 183 CHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM-------PKELRDVKLAILTC 255 (622)
Q Consensus 183 ~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~-------~~~~~n~ki~ll~~ 255 (622)
++.+++++++|+..+++. ..++++.+ +..| .++++++|++|+++|.+|+| ++.++|++|+++++
T Consensus 155 -~~~l~~lv~eAv~~vg~~--g~i~v~~~---~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~ 225 (544)
T PRK12850 155 -DESIGEMIAEAMDKVGKE--GVITVEEA---KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEK 225 (544)
T ss_pred -HHHHHHHHHHHHHHhccc--CceeeEEc---cccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEec
Confidence 799999999999999742 22332222 2223 58899999999999999987 67789999999998
Q ss_pred CCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCC------cEEee---
Q psy14623 256 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQL------PAVRW--- 326 (622)
Q Consensus 256 ~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I------~~i~~--- 326 (622)
.+ ++.++ +.++++++.+.|++|||++++|++.++++|..++| .++++
T Consensus 226 ~i-------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~ 281 (544)
T PRK12850 226 KI-------------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGF 281 (544)
T ss_pred cc-------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCc
Confidence 53 33333 48899999999999999999999999999999999 78887
Q ss_pred --cCcccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccc
Q psy14623 327 --VGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAG 404 (622)
Q Consensus 327 --v~~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~ 404 (622)
+++++|+|||++|||+++++...+ ++++++++.+|+|+
T Consensus 282 g~~~~~~le~ia~~tG~~~i~~~~~~----------------------------------------~~~~~~~~~LG~~~ 321 (544)
T PRK12850 282 GDRRKAMLEDIAVLTGGQVISEDLGI----------------------------------------KLENVTLDMLGRAK 321 (544)
T ss_pred CcccHHHHHHHHHHhCCEEeccccCC----------------------------------------CcccCCHHHcCCCc
Confidence 889999999999999999843211 11227778899999
Q ss_pred cEEEEEeccccceEEEEeccCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHH
Q psy14623 405 LVREISFGTTKDHMLVIEECENS-----------------------------------KAVTIFIRGGNKMIIEEAKRSI 449 (622)
Q Consensus 405 ~v~~~~~g~~~~~~~~~~~~~~~-----------------------------------~~~TIll~G~t~~~l~E~~~~l 449 (622)
.|++. .++++++++|..+ +.+||+|||+|+.+++|++|++
T Consensus 322 ~v~~~-----~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i 396 (544)
T PRK12850 322 RVLIT-----KENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRV 396 (544)
T ss_pred EEEEE-----eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHH
Confidence 99874 4688999988764 4899999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhh
Q psy14623 450 HDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQV 529 (622)
Q Consensus 450 ~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~ 529 (622)
+||++++++++++| ||||||++|++|+..|+++ ...++++|+++++|++||+.||++|++|||+|+.+++++|++.|
T Consensus 397 ~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~- 473 (544)
T PRK12850 397 DDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP- 473 (544)
T ss_pred HHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-
Confidence 99999999999998 9999999999999999988 67789999999999999999999999999999999999998764
Q ss_pred hcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCCCchhhhhhhccCCcccc
Q psy14623 530 KEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVTA 604 (622)
Q Consensus 530 ~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~~~~~~~~ 604 (622)
.++|+|+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|... |..++.+++-|..||++|.
T Consensus 474 ----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~-~~~~~~~~~~~~~~~~~~~ 543 (544)
T PRK12850 474 ----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEA-PKKAAAAAAGPGPGMGGMG 543 (544)
T ss_pred ----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccC-CCCCCCCCCCCCCCCCCCC
Confidence 468999999999999999999999999999999999999999999999875 4557777777889999874
No 29
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-88 Score=753.40 Aligned_cols=479 Identities=23% Similarity=0.335 Sum_probs=432.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCCh----hHHHHHHHHhhcccc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDE 103 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP----~akll~~~a~~~~~~ 103 (622)
+..+|.+++..|++|++.++++|+|||||+||+|||+++.|+++|||||+|||++|+++|| +|+|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 4577889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhh
Q psy14623 104 IGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKC 183 (622)
Q Consensus 104 ~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~ 183 (622)
+||||||+++|+++||+++.++++.|+||..|++||+.|++.++++|++++++++ +.+.+.++|+++++ +
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~----~~~~l~~va~~s~~------~ 154 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT----TNAEIAQVATISAN------G 154 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcc------C
Confidence 9999999999999999999999999999999999999999999999999987653 46789999998875 3
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCC-------CCcccccceEEEecCC
Q psy14623 184 HRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQ-------MPKELRDVKLAILTCP 256 (622)
Q Consensus 184 ~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~-------~~~~~~n~ki~ll~~~ 256 (622)
++++++++++|+..+++. + .|.|.+.. +...++++++|++|+++|.+|+ |++.++|++|++++++
T Consensus 155 ~~~l~~lv~~Av~~vg~~---g----~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~ 226 (541)
T PRK12851 155 DAEIGRLVAEAMEKVGNE---G----VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKK 226 (541)
T ss_pred hHHHHHHHHHHHHHhccc---C----ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCC
Confidence 899999999999998642 2 25666644 4567899999999999999997 7788899999999997
Q ss_pred CCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCC------cEEee----
Q psy14623 257 FEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQL------PAVRW---- 326 (622)
Q Consensus 257 l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I------~~i~~---- 326 (622)
++ +.++ +.++++.+.+.+++|||++++|++.++++|..++| .++++
T Consensus 227 i~-------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~ 282 (541)
T PRK12851 227 IS-------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFG 282 (541)
T ss_pred cC-------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccc
Confidence 42 2333 47899999999999999999999999999999998 66775
Q ss_pred -cCcccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccccccccc
Q psy14623 327 -VGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGL 405 (622)
Q Consensus 327 -v~~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~ 405 (622)
+++++|+|||++|||+++++...+ ++++++++.+|+|+.
T Consensus 283 ~~~~~~l~~ia~~tGa~~i~~~~~~----------------------------------------~~~~~~~~~LG~~~~ 322 (541)
T PRK12851 283 DRRKAMLEDIAILTGGTVISEDLGI----------------------------------------KLENVTLEQLGRAKK 322 (541)
T ss_pred cccHhHHHHHHHHhCCEEeccCCCC----------------------------------------CcCcCCHHHcCCccE
Confidence 899999999999999999853221 112277788999999
Q ss_pred EEEEEeccccceEEEEeccCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHH
Q psy14623 406 VREISFGTTKDHMLVIEECENS-----------------------------------KAVTIFIRGGNKMIIEEAKRSIH 450 (622)
Q Consensus 406 v~~~~~g~~~~~~~~~~~~~~~-----------------------------------~~~TIll~G~t~~~l~E~~~~l~ 450 (622)
|++. .++++++++|.++ +.+||+|||+|+.+++|++|+++
T Consensus 323 v~~~-----~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~ 397 (541)
T PRK12851 323 VVVE-----KENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVD 397 (541)
T ss_pred EEEE-----cceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHH
Confidence 9884 4788999988764 28899999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhh
Q psy14623 451 DALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVK 530 (622)
Q Consensus 451 dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~ 530 (622)
||++++++++++| ||||||++|+++|.+|++++.. ++++++++++|++||+.||++|++|||+|+.+++++|++.|
T Consensus 398 DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-- 473 (541)
T PRK12851 398 DALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-- 473 (541)
T ss_pred HHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC--
Confidence 9999999999998 9999999999999999998876 88999999999999999999999999999999999998765
Q ss_pred cCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCCCchhhhhhhccCCc
Q psy14623 531 EVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSME 601 (622)
Q Consensus 531 ~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~~~~~ 601 (622)
.++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||++|++|.. +|++++.++++|.+||+
T Consensus 474 ---~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~-~~~~~~~~~~~~~~~~~ 540 (541)
T PRK12851 474 ---GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAE-KPKKEPAPPAPPGGGMD 540 (541)
T ss_pred ---CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhc-CCCCCCCCCCCCCcccC
Confidence 37999999999999999999999999999999999999999999999977 55678888888999986
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.9e-87 Score=744.88 Aligned_cols=467 Identities=20% Similarity=0.339 Sum_probs=422.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCCh----hHHHHHHHHhhcccc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDE 103 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP----~akll~~~a~~~~~~ 103 (622)
+..+|.+++..|++||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 5678899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhh
Q psy14623 104 IGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKC 183 (622)
Q Consensus 104 ~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~ 183 (622)
+||||||+++||++||+++.++++.|+||..|++||+.|++.++++|++++.+++ +.+.|.++|+|++++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~----~~~~l~~va~ts~~~------ 165 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK----TKEDILNVATISANG------ 165 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHHcCC------
Confidence 9999999999999999999999999999999999999999999999999987663 577899999999876
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccce-eEEeeEEEeecCCCCCC-------CcccccceEEEecC
Q psy14623 184 HRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDT-MLVKGVVIDKDFSHPQM-------PKELRDVKLAILTC 255 (622)
Q Consensus 184 ~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS-~li~Giv~~~~~~~~~~-------~~~~~n~ki~ll~~ 255 (622)
++++++++++|+..+++. . .|.+..|++++|| ++++|++|+++|.+|+| ++.+++++|+++++
T Consensus 166 ~~~l~~li~eAv~~vg~~---g------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~ 236 (555)
T PTZ00114 166 DVEIGSLIADAMDKVGKD---G------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDK 236 (555)
T ss_pred hHHHHHHHHHHHHHhCcC---C------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcC
Confidence 789999999999998632 1 1455679999998 89999999999999987 67789999999999
Q ss_pred CCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCC------CcEEee---
Q psy14623 256 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQ------LPAVRW--- 326 (622)
Q Consensus 256 ~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~------I~~i~~--- 326 (622)
+|+ +++++ .++++++.+.|++|||++++|++.|+++|..++ |.++++
T Consensus 237 ~L~-------------~~~~i-----------~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~ 292 (555)
T PTZ00114 237 KIS-------------SIQSI-----------LPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGF 292 (555)
T ss_pred CCC-------------CHHHH-----------HHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCC
Confidence 976 34444 788999999999999999999999999999997 778876
Q ss_pred --cCcccHHHHHHHhCCeeccCccc-hhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccccccc
Q psy14623 327 --VGGPDIELIAIVTGGRIVPRFEE-LTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKA 403 (622)
Q Consensus 327 --v~~~~L~~ia~~tGa~ii~~~~~-l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~ 403 (622)
+++++|+|||++|||++++++.. . .+++++++.+|+|
T Consensus 293 g~~~~~~l~~la~~tG~~~i~~~~~~~----------------------------------------~l~~~~~~~LG~a 332 (555)
T PTZ00114 293 GDNRKDILQDIAVLTGATVVSEDNVGL----------------------------------------KLDDFDPSMLGSA 332 (555)
T ss_pred CcchHHHHHHHHHHhCCEEeccccccc----------------------------------------CcccCCHHHcCCC
Confidence 66799999999999999988621 1 1122777889999
Q ss_pred ccEEEEEeccccceEEEEeccC-----------------------------------CCceEEEEEeCCCHHHHHHHHHH
Q psy14623 404 GLVREISFGTTKDHMLVIEECE-----------------------------------NSKAVTIFIRGGNKMIIEEAKRS 448 (622)
Q Consensus 404 ~~v~~~~~g~~~~~~~~~~~~~-----------------------------------~~~~~TIll~G~t~~~l~E~~~~ 448 (622)
+.|++.. +++++++++. .++.+||+|||+|+.+++|++|+
T Consensus 333 ~~v~~~~-----~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~ 407 (555)
T PTZ00114 333 KKVTVTK-----DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDR 407 (555)
T ss_pred ceEEEEe-----ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHH
Confidence 9999854 4566776665 56899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhc--cccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q psy14623 449 IHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEAD--KISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKS 526 (622)
Q Consensus 449 l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~--~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~ 526 (622)
++||++++++++++| ||||||++|++||.+|++++. ..++++|+++++|++||+.||++|++|||+|+.+++++|++
T Consensus 408 i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~ 486 (555)
T PTZ00114 408 IEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE 486 (555)
T ss_pred HHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 999999999999998 999999999999999998875 57899999999999999999999999999999999999976
Q ss_pred HhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCC
Q psy14623 527 RQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGI 587 (622)
Q Consensus 527 ~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~ 587 (622)
.++.++|||+.+|++.||++.|||||+.||+++|+.|+++|++||++|++|...++.
T Consensus 487 ----~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 487 ----KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred ----cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 135689999999999999999999999999999999999999999999999986543
No 31
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.8e-87 Score=744.22 Aligned_cols=482 Identities=22% Similarity=0.339 Sum_probs=425.7
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhccc----CChhHHHHHHHHhhccc
Q psy14623 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDV----DHEIAKLMVQLSQSQDD 102 (622)
Q Consensus 27 ~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~----~hP~akll~~~a~~~~~ 102 (622)
+...+|.+++..|++|+..++++|+|||||+||+|||+++.|+++|||||+|||++|++ +||+|+|+++++++|++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~ 83 (545)
T PRK12852 4 KDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTND 83 (545)
T ss_pred chhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCc
Confidence 35678899999999999999999999999999999999999999999999999999999 49999999999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchh
Q psy14623 103 EIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINK 182 (622)
Q Consensus 103 ~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~ 182 (622)
++||||||+++||++||+++.++++.|+||..|++||+.|++.+++.|++++++++ +.+.+.+++++++++
T Consensus 84 e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~----~~~~l~~va~~s~~~----- 154 (545)
T PRK12852 84 LAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA----SSAEIAQVGTISANG----- 154 (545)
T ss_pred eecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHhhhcCC-----
Confidence 99999999999999999999999999999999999999999999999999987664 345699999998876
Q ss_pred hHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCc-cceeEEeeEEEeecCCCCC-------CCcccccceEEEec
Q psy14623 183 CHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL-EDTMLVKGVVIDKDFSHPQ-------MPKELRDVKLAILT 254 (622)
Q Consensus 183 ~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~-~dS~li~Giv~~~~~~~~~-------~~~~~~n~ki~ll~ 254 (622)
++++++++++|+..+++. . .|.+. .|+.. .++++++|+.|+++|.+|+ |+..++|++|++++
T Consensus 155 -~~~l~~li~eA~~~vg~~---g----~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d 224 (545)
T PRK12852 155 -DAAIGKMIAQAMQKVGNE---G----VITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHE 224 (545)
T ss_pred -hHHHHHHHHHHHHHhccC---C----ceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEec
Confidence 789999999999999742 1 25554 37775 6899999999999999998 56667889988887
Q ss_pred CCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHC------CCcEEeecC
Q psy14623 255 CPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQK------QLPAVRWVG 328 (622)
Q Consensus 255 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~------~I~~i~~v~ 328 (622)
+. ++++++ +.++++.+.+.+++|||++++|++.|+++|..| +|.++++.+
T Consensus 225 ~~-------------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~ 280 (545)
T PRK12852 225 KK-------------LSGLQA-----------MLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPG 280 (545)
T ss_pred Cc-------------cCCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCC
Confidence 53 344444 488999999999999999999999999999987 688998655
Q ss_pred -----cccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccccccc
Q psy14623 329 -----GPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKA 403 (622)
Q Consensus 329 -----~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~ 403 (622)
+++|+|||++|||+++++-..+ ++++++++.+|+|
T Consensus 281 ~~~~r~~~l~~ia~~tGa~~i~~~~~~----------------------------------------~l~~~~~~~lG~~ 320 (545)
T PRK12852 281 FGDRRKAMLEDIAILTGGQLISEDLGI----------------------------------------KLENVTLKMLGRA 320 (545)
T ss_pred cccchHhHHHHHHHhcCCEEEecCcCC----------------------------------------CcCCCCHHHCCCC
Confidence 8999999999999999852110 1122777889999
Q ss_pred ccEEEEEeccccceEEEEeccCC-----------------------------------CceEEEEEeCCCHHHHHHHHHH
Q psy14623 404 GLVREISFGTTKDHMLVIEECEN-----------------------------------SKAVTIFIRGGNKMIIEEAKRS 448 (622)
Q Consensus 404 ~~v~~~~~g~~~~~~~~~~~~~~-----------------------------------~~~~TIll~G~t~~~l~E~~~~ 448 (622)
+.|++. .+++++++++.. ++.+||+|||+|+.+++|++|+
T Consensus 321 ~~v~~~-----~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~ 395 (545)
T PRK12852 321 KKVVID-----KENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDR 395 (545)
T ss_pred cEEEEE-----ccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH
Confidence 999884 368889988765 3789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHh
Q psy14623 449 IHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQ 528 (622)
Q Consensus 449 l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~ 528 (622)
++||++++++++++| ||||||++|++|+.+|++++.. ++.+|+++++|++||+.||++|++|||+|+.+++++|++.|
T Consensus 396 i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~ 473 (545)
T PRK12852 396 VEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK 473 (545)
T ss_pred HHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 999999999999998 9999999999999999998876 78899999999999999999999999999999999998876
Q ss_pred hhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCCCchhhhhhhccCCccc
Q psy14623 529 VKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVT 603 (622)
Q Consensus 529 ~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~~~~~~~ 603 (622)
++++|||+.+|++.||++.|||||+.||+++|+.|+|+|++||++|++|...+++ +..++-+|.++|+.|
T Consensus 474 ----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~-~~~~~~~~~~~~~~~ 543 (545)
T PRK12852 474 ----SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK-DAAPAMPAGGGMGGM 543 (545)
T ss_pred ----CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC-CCCCCCCCCCCCCCC
Confidence 3679999999999999999999999999999999999999999999999875544 333334455566655
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.2e-86 Score=737.05 Aligned_cols=460 Identities=25% Similarity=0.379 Sum_probs=419.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCCh----hHHHHHHHHhhcccc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDE 103 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP----~akll~~~a~~~~~~ 103 (622)
+..+|.+++..|++||+.++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +++++++++++|+++
T Consensus 2 ~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 81 (520)
T cd03344 2 DIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 81 (520)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccc
Confidence 3467899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhh
Q psy14623 104 IGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKC 183 (622)
Q Consensus 104 ~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~ 183 (622)
+||||||+++|+++||+++.++++.|+||..|++||+.|.+.++++|++++++++ +.+.|.++|+|++++
T Consensus 82 ~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~----~~~~l~~va~ts~~~------ 151 (520)
T cd03344 82 AGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK----TKEEIAQVATISANG------ 151 (520)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcCC------
Confidence 9999999999999999999999999999999999999999999999999977663 578899999999987
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccc-eeEEeeEEEeecCCCCCC---C----cccccceEEEecC
Q psy14623 184 HRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLED-TMLVKGVVIDKDFSHPQM---P----KELRDVKLAILTC 255 (622)
Q Consensus 184 ~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~d-S~li~Giv~~~~~~~~~~---~----~~~~n~ki~ll~~ 255 (622)
++++++++++|+..+++. + .|.+ .+|++.+| +++++|++|+++|.+|+| | +.++|++|+++++
T Consensus 152 ~~~l~~lv~~A~~~v~~~---~----~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~ 222 (520)
T cd03344 152 DEEIGELIAEAMEKVGKD---G----VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDK 222 (520)
T ss_pred hHHHHHHHHHHHHHhccC---C----cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECC
Confidence 799999999999988632 1 2555 36999988 799999999999999987 3 4578999999999
Q ss_pred CCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCC------cEEeec--
Q psy14623 256 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQL------PAVRWV-- 327 (622)
Q Consensus 256 ~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I------~~i~~v-- 327 (622)
++ ++++++ .++++++.+.|++|||++++|++.++++|.+++| .++++.
T Consensus 223 ~l-------------~~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~ 278 (520)
T cd03344 223 KI-------------SSIQEL-----------LPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGF 278 (520)
T ss_pred CC-------------CCHHHH-----------HHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCC
Confidence 84 455665 7789999999999999999999999999999999 777755
Q ss_pred ---CcccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccc
Q psy14623 328 ---GGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAG 404 (622)
Q Consensus 328 ---~~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~ 404 (622)
++++|+|||++|||+++++...+ +++.++++++|+|+
T Consensus 279 ~~~~~~~l~~la~~tGa~~~~~~~~~----------------------------------------~~~~~~~~~LG~~~ 318 (520)
T cd03344 279 GDRRKAMLEDIAILTGGTVISEELGL----------------------------------------KLEDVTLEDLGRAK 318 (520)
T ss_pred CcccHHHHHHHHHHhCCEEecccccC----------------------------------------CcccCCHHHCCcce
Confidence 78999999999999999843210 11127778899999
Q ss_pred cEEEEEeccccceEEEEeccCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHH
Q psy14623 405 LVREISFGTTKDHMLVIEECENS-----------------------------------KAVTIFIRGGNKMIIEEAKRSI 449 (622)
Q Consensus 405 ~v~~~~~g~~~~~~~~~~~~~~~-----------------------------------~~~TIll~G~t~~~l~E~~~~l 449 (622)
.|++. .++++|+++|..+ +.|||+|||+|+.+++|++|++
T Consensus 319 ~v~~~-----~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i 393 (520)
T cd03344 319 KVVVT-----KDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRV 393 (520)
T ss_pred EEEEe-----eceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHH
Confidence 99974 3688999888664 5999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhh
Q psy14623 450 HDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQV 529 (622)
Q Consensus 450 ~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~ 529 (622)
+||++++++++++| +|||||++|++++.+|++++. .++++|+++++|++||+.||++|++|||+|+.+++++|++.|.
T Consensus 394 ~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~ 471 (520)
T cd03344 394 EDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD 471 (520)
T ss_pred HHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC
Confidence 99999999999998 999999999999999999987 8999999999999999999999999999999999999987653
Q ss_pred hcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheec
Q psy14623 530 KEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRS 582 (622)
Q Consensus 530 ~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~ 582 (622)
++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||++|.+|.
T Consensus 472 -----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 472 -----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred -----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 799999999999999999999999999999999999999999999986
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=7.5e-86 Score=732.14 Aligned_cols=457 Identities=25% Similarity=0.376 Sum_probs=415.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCCh----hHHHHHHHHhhcccc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDE 103 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP----~akll~~~a~~~~~~ 103 (622)
+..+|.+++..|++|++.++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +++++++++++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 4578899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhh
Q psy14623 104 IGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKC 183 (622)
Q Consensus 104 ~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~ 183 (622)
+||||||+++|+++||+++.++++.|+||..|++||+.|++.++++|++++.+++ +.+.|.++|++++++
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~----~~~~l~~va~ts~~~------ 152 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK----GKKEIAQVATISANN------ 152 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhccC------
Confidence 9999999999999999999999999999999999999999999999999977663 577899999998874
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCc-cceeEEeeEEEeecCCCCCC-------CcccccceEEEecC
Q psy14623 184 HRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL-EDTMLVKGVVIDKDFSHPQM-------PKELRDVKLAILTC 255 (622)
Q Consensus 184 ~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~-~dS~li~Giv~~~~~~~~~~-------~~~~~n~ki~ll~~ 255 (622)
++++++++++|+..+++. . .|.|.. |+.. .+|++++|++|+++|.+|+| ++.++|++|+++++
T Consensus 153 ~~~l~~lv~~A~~~v~~~---~----~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~ 223 (524)
T TIGR02348 153 DEEIGSLIAEAMEKVGKD---G----VITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDK 223 (524)
T ss_pred hHHHHHHHHHHHHHhCcC---C----cEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccC
Confidence 899999999999998642 1 155553 6666 56999999999999999987 67788999999988
Q ss_pred CCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHC------CCcEEeecCc
Q psy14623 256 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQK------QLPAVRWVGG 329 (622)
Q Consensus 256 ~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~------~I~~i~~v~~ 329 (622)
. +++++++ .++++.+.+.|++|||++++|++.|+++|..+ +|.++++++.
T Consensus 224 ~-------------i~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~ 279 (524)
T TIGR02348 224 K-------------ISNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGF 279 (524)
T ss_pred C-------------cCCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCc
Confidence 5 3456665 88899999999999999999999999999997 7789987744
Q ss_pred -----ccHHHHHHHhCCeecc-----CccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccc
Q psy14623 330 -----PDIELIAIVTGGRIVP-----RFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEK 399 (622)
Q Consensus 330 -----~~L~~ia~~tGa~ii~-----~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (622)
++|+|||++|||++++ ++++ ++++.
T Consensus 280 ~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~---------------------------------------------~~~~~ 314 (524)
T TIGR02348 280 GDRRKAMLEDIAILTGGQVISEELGLKLEE---------------------------------------------VTLDD 314 (524)
T ss_pred cchhhhhHHHHHHHhCCEEecccccCCcCc---------------------------------------------CCHHH
Confidence 8999999999999998 4443 77788
Q ss_pred ccccccEEEEEeccccceEEEEeccCCCc-----------------------------------eEEEEEeCCCHHHHHH
Q psy14623 400 LGKAGLVREISFGTTKDHMLVIEECENSK-----------------------------------AVTIFIRGGNKMIIEE 444 (622)
Q Consensus 400 lG~~~~v~~~~~g~~~~~~~~~~~~~~~~-----------------------------------~~TIll~G~t~~~l~E 444 (622)
+|+|+.|++. .+++++++++..++ .+||+|||+|+.+++|
T Consensus 315 LG~~~~v~~~-----~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E 389 (524)
T TIGR02348 315 LGKAKKVTVD-----KDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKE 389 (524)
T ss_pred CCCceEEEEe-----ecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 9999999874 46889998876543 6889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q psy14623 445 AKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEV 524 (622)
Q Consensus 445 ~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L 524 (622)
++|+++||++++|+++++| ||||||++|++|+.+|++ ..+.++++++++++|++||+.||++|++|||+|+.+++++|
T Consensus 390 ~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l 467 (524)
T TIGR02348 390 KKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKV 467 (524)
T ss_pred HHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999998 999999999999999998 67788999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCC
Q psy14623 525 KSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPN 584 (622)
Q Consensus 525 ~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~ 584 (622)
+.. .+ ++|||+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|...
T Consensus 468 ~~~---~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~ 522 (524)
T TIGR02348 468 KES---KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADK 522 (524)
T ss_pred Hhc---CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 864 12 38999999999999999999999999999999999999999999999754
No 34
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=3.4e-85 Score=727.90 Aligned_cols=483 Identities=20% Similarity=0.318 Sum_probs=424.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccC----ChhHHHHHHHHhhccc
Q psy14623 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD----HEIAKLMVQLSQSQDD 102 (622)
Q Consensus 27 ~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~----hP~akll~~~a~~~~~ 102 (622)
++..+|.+++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++ ||+++|+++++++|++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~ 83 (546)
T PRK14104 4 KEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSAD 83 (546)
T ss_pred ceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcc
Confidence 355788999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchh
Q psy14623 103 EIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINK 182 (622)
Q Consensus 103 ~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~ 182 (622)
++||||||+++|+++||+++.++++.|+||+.|++||++|++.+++.|++++++++ +.+.+.++|+++.++
T Consensus 84 e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~----~~~~l~~va~~s~~~----- 154 (546)
T PRK14104 84 AAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVT----SNDEIAQVGTISANG----- 154 (546)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHhcC-----
Confidence 99999999999999999999999999999999999999999999999999987664 245799999999887
Q ss_pred hHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCc-cceeEEeeEEEeecCCCCCC-------CcccccceEEEec
Q psy14623 183 CHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL-EDTMLVKGVVIDKDFSHPQM-------PKELRDVKLAILT 254 (622)
Q Consensus 183 ~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~-~dS~li~Giv~~~~~~~~~~-------~~~~~n~ki~ll~ 254 (622)
++++++++++|+..+++. + .|.+.. ++.. .++++++|++|+++|.+|+| +..+++++|++.+
T Consensus 155 -d~~i~~lv~~Av~~vg~~---g----~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d 224 (546)
T PRK14104 155 -DAEIGKFLADAMKKVGNE---G----VITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINE 224 (546)
T ss_pred -chHHHHHHHHHHHHhccC---C----ceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEeh
Confidence 478999999999999742 2 255654 3455 48999999999999999988 4456678887776
Q ss_pred CCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHH------CCCcEEeecC
Q psy14623 255 CPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQ------KQLPAVRWVG 328 (622)
Q Consensus 255 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~------~~I~~i~~v~ 328 (622)
. .+++++++ .++++.+.+.|++|||++++|+++|+++|.. .+|.++++.+
T Consensus 225 ~-------------~i~~~~~i-----------~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~ 280 (546)
T PRK14104 225 K-------------KLSSLNEL-----------LPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPG 280 (546)
T ss_pred h-------------hhcCHHHH-----------HHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccC
Confidence 2 24555554 8999999999999999999999999999996 4567887765
Q ss_pred -----cccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccccccc
Q psy14623 329 -----GPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKA 403 (622)
Q Consensus 329 -----~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~ 403 (622)
+++|+|||++|||+++++...+ +++++++..+|+|
T Consensus 281 ~g~~r~~~l~~ia~~tG~~~i~~~~~~----------------------------------------~l~~~~~~~LG~a 320 (546)
T PRK14104 281 FGDRRKAMLQDIAILTGGQAISEDLGI----------------------------------------KLENVTLQMLGRA 320 (546)
T ss_pred CCcchHHHHHHHHHHhCCEEEecCCCC----------------------------------------CcCcCCHHHCCce
Confidence 7999999999999999872211 1122777889999
Q ss_pred ccEEEEEeccccceEEEEeccCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHH
Q psy14623 404 GLVREISFGTTKDHMLVIEECENS-----------------------------------KAVTIFIRGGNKMIIEEAKRS 448 (622)
Q Consensus 404 ~~v~~~~~g~~~~~~~~~~~~~~~-----------------------------------~~~TIll~G~t~~~l~E~~~~ 448 (622)
+.+++ + +++++++++|..+ +.+||+|||+|+.+++|++|+
T Consensus 321 ~~v~~---~--~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~ 395 (546)
T PRK14104 321 KKVMI---D--KENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDR 395 (546)
T ss_pred eEEEE---c--CCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Confidence 99885 3 6788999998764 899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHh
Q psy14623 449 IHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQ 528 (622)
Q Consensus 449 l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~ 528 (622)
++||++++++++++| ||||||++|++++..|+++. ..++++++++++|++||+.||++|++|||+|+.+++++|+..|
T Consensus 396 i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~ 473 (546)
T PRK14104 396 VDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE 473 (546)
T ss_pred HHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC
Confidence 999999999999998 99999999999999999874 4578999999999999999999999999999999999998653
Q ss_pred hhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCCCchhhhhhhccCCccc
Q psy14623 529 VKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVT 603 (622)
Q Consensus 529 ~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~~~~~~~ 603 (622)
..++|+|+.+|++.||++.|||||+.||+++|+.|+++|++||++|++|...++.....++-+|.++|++|
T Consensus 474 ----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~~~~~~~~~~~~ 544 (546)
T PRK14104 474 ----QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGGGMGGM 544 (546)
T ss_pred ----CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCCCC
Confidence 45799999999999999999999999999999999999999999999997755555444443566777765
No 35
>KOG0364|consensus
Probab=100.00 E-value=1.2e-87 Score=682.28 Aligned_cols=521 Identities=32% Similarity=0.545 Sum_probs=490.5
Q ss_pred CCceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHH
Q psy14623 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMV 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~ 94 (622)
+.|.+.+... .++..|..++..|++|+++++|.++||+||+.|.||+.++.|.+..||||..||+++++.||+|+-+.
T Consensus 2 ~apv~~~~~~--~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmi 79 (527)
T KOG0364|consen 2 QAPVLVLSKN--TKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMI 79 (527)
T ss_pred CCceeecccc--cCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHh
Confidence 4565544333 36678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHh
Q psy14623 95 QLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTT 174 (622)
Q Consensus 95 ~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~ts 174 (622)
+++.+||+++|||||||++|++++|.++..++++++||+.|+++|.+|++.+++.++..+.++ |..+...+.+++.++
T Consensus 80 el~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~--d~~~~~km~~vi~~~ 157 (527)
T KOG0364|consen 80 ELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPV--DVKDQAKMLRVINSS 157 (527)
T ss_pred hhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccC--CcccHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999886554 445778899999999
Q ss_pred hcCccchhhHHHHHHHHHHHHHHhcccccCCCCcc-cEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEe
Q psy14623 175 LGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFE-LIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAIL 253 (622)
Q Consensus 175 l~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~-~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll 253 (622)
..+|+.++|++..+++..+|+..++....+.+|+. +.+++|++||.+++|++++|+.+.++..||.|.+.++|+|+++|
T Consensus 158 v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLl 237 (527)
T KOG0364|consen 158 VGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLL 237 (527)
T ss_pred hhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEe
Confidence 99999999999999999999999986544467765 69999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHH
Q psy14623 254 TCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIE 333 (622)
Q Consensus 254 ~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~ 333 (622)
+|||+|.+.+..+++.+..-+++....+.|++|+..+++.+....++||++.++++|.+++||.++||++++++++.|-.
T Consensus 238 D~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ 317 (527)
T KOG0364|consen 238 DCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNN 317 (527)
T ss_pred cCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccc-cccEEEEEec
Q psy14623 334 LIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVREISFG 412 (622)
Q Consensus 334 ~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~-~~~v~~~~~g 412 (622)
|++++|||.++++.++ +.+.+.|+ |+.|+...+|
T Consensus 318 ria~acga~iv~rped---------------------------------------------l~e~dvGt~agLf~~kK~g 352 (527)
T KOG0364|consen 318 RIARACGARIVNRPED---------------------------------------------LPERDVGTGAGLFEVKKIG 352 (527)
T ss_pred hhhhhcCceeccChhh---------------------------------------------CchhccCcccceeeeeccC
Confidence 9999999999988877 66777885 6799999999
Q ss_pred cccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhH
Q psy14623 413 TTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQ 492 (622)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~ 492 (622)
+++|.||..|.+++.|||++|||++.+++|.+|.++||+.++|+.+-+|+++|||||+||.+|+.|++.+...++-++
T Consensus 353 --deyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVek 430 (527)
T KOG0364|consen 353 --DEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEK 430 (527)
T ss_pred --chhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhc
Confidence 899999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHH
Q psy14623 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVK 572 (622)
Q Consensus 493 ~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~ 572 (622)
+.+.+.|.||+.+|++|++|||.+++..++.++..|.. +...+|+|..+|.++||.+.++|||..+|.+..++|++.++
T Consensus 431 wPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~-G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~ 509 (527)
T KOG0364|consen 431 WPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKE-GQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESAC 509 (527)
T ss_pred cchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcC-cceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999875 45678999999999999999999999999999999999999
Q ss_pred HHHhhhheecCCCCC
Q psy14623 573 MILKIDDIRSPNDGI 587 (622)
Q Consensus 573 ~lL~iD~iI~~~~~~ 587 (622)
+|||+|+|+...+..
T Consensus 510 ~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 510 LLLRIDDIVSGKKKR 524 (527)
T ss_pred HHHhhhceeeeeeec
Confidence 999999999887754
No 36
>KOG0362|consensus
Probab=100.00 E-value=2.6e-85 Score=675.99 Aligned_cols=520 Identities=28% Similarity=0.471 Sum_probs=475.3
Q ss_pred CccccCCCCCceeeeccchhhhhccc-HHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhccc
Q psy14623 7 PGLMMDEFGRPFIILRNQQEQKRIIG-NDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDV 85 (622)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~ 85 (622)
|+++.|+++.| .+++++. .+..| +++..+|+.||+++++++||+|||+||+||++|+.|++++|||.+||+++|++
T Consensus 1 M~~~vp~a~~~-q~~k~g~--r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev 77 (537)
T KOG0362|consen 1 MALTVPKAGIP-QMLKEGA--RSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEV 77 (537)
T ss_pred CCccCCCCchh-hHHhccc--cCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhc
Confidence 45667777655 4567763 33555 46899999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChH
Q psy14623 86 DHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLE 165 (622)
Q Consensus 86 ~hP~akll~~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~ 165 (622)
+||+||||+++++.|+++.||||+++|+|+++||++|.+|+..|++|..|++||+.|.+.+++.|+++...--.+..|.+
T Consensus 78 ~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~ 157 (537)
T KOG0362|consen 78 EHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE 157 (537)
T ss_pred cCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988543222333444
Q ss_pred HHHHHHHHhhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCccc
Q psy14623 166 PLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKEL 245 (622)
Q Consensus 166 ~L~~va~tsl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~ 245 (622)
..+++++++|.... .+++++++++|+..+.+. ..|+.++|+|+|+.|+++++|+++.|++|++... .-+++.
T Consensus 158 ---~~~rs~i~skq~~~-ed~l~~lVa~ac~si~p~--~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~a 229 (537)
T KOG0362|consen 158 ---WALRSVIMSKQYGN-EDFLTKLVAKACVSILPL--MSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSA 229 (537)
T ss_pred ---HHHHHHHHHhhcch-HHHHHHHHHHHHHhhccc--ccccccceEEEEEecCCcccceeeEEEEeccccC--Cccccc
Confidence 67788888876655 899999999999999875 3489999999999999999999999999998764 234777
Q ss_pred ccceEEEecCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEe
Q psy14623 246 RDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVR 325 (622)
Q Consensus 246 ~n~ki~ll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~ 325 (622)
+.+||++++||++...++++.++.+++++++.+|.+.|+..+...++.+...|+++|++.+.|++.+++||.+.+|++++
T Consensus 230 k~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlq 309 (537)
T KOG0362|consen 230 KDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQ 309 (537)
T ss_pred ccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccccccccc
Q psy14623 326 WVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGL 405 (622)
Q Consensus 326 ~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~ 405 (622)
--++.||.|+++..||++++++.. +.+..+|+|++
T Consensus 310 i~Sk~eLrrlcrtvGA~~l~rl~~---------------------------------------------P~~~~lG~~d~ 344 (537)
T KOG0362|consen 310 INSKFDLRRLCRTVGATALPRLFP---------------------------------------------PAPEELGYCDS 344 (537)
T ss_pred eccHhhHHHHHHHcCCccchhccC---------------------------------------------CCCccccccce
Confidence 999999999999999999998876 77788999999
Q ss_pred EEEEEeccccceEEEEe-ccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhh
Q psy14623 406 VREISFGTTKDHMLVIE-ECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEA 484 (622)
Q Consensus 406 v~~~~~g~~~~~~~~~~-~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~ 484 (622)
|....+| +..++.|. ++..+++.|++|||++...+|+.||+++|++++.+...++++++||+|++|++|++.|.+++
T Consensus 345 V~~~EiG--~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g 422 (537)
T KOG0362|consen 345 VSTQEIG--DTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRG 422 (537)
T ss_pred eeeeecC--CceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhc
Confidence 9999999 55666554 55568899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCC-cccccccCCcccchHHHHHH
Q psy14623 485 DKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLN-GTNDMKQQNVIEALRSKKQQ 563 (622)
Q Consensus 485 ~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g-~~~d~~~~gI~dp~~vk~~~ 563 (622)
.++++..|++++.||+||+.+|++|++|+|++..+++++|...|. ...+.|+|+..+ ...|+.+.||||-+..|.++
T Consensus 423 ~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~--~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a 500 (537)
T KOG0362|consen 423 ATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ--GGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQA 500 (537)
T ss_pred ccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc--CCCcceeeeeccccccChhhhchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 456689988776 58999999999999999999
Q ss_pred HHHHHHHHHHHHhhhheecCCCC
Q psy14623 564 ILLSTQLVKMILKIDDIRSPNDG 586 (622)
Q Consensus 564 L~~A~e~a~~lL~iD~iI~~~~~ 586 (622)
++.|+|+|.++|++|+||++.+.
T Consensus 501 ~k~at~aa~tvl~vDqiimak~a 523 (537)
T KOG0362|consen 501 IKLATEAALTVLTVDQIIMAKKA 523 (537)
T ss_pred HHHHHhhhheeeehhheeEeccc
Confidence 99999999999999999999876
No 37
>KOG0360|consensus
Probab=100.00 E-value=4.9e-87 Score=684.00 Aligned_cols=517 Identities=33% Similarity=0.485 Sum_probs=482.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCch
Q psy14623 29 RIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGT 108 (622)
Q Consensus 29 ~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGT 108 (622)
...|+.+|..|..|+..++++|++||||-|++||++++.|++.+||||+|||+.|.++||++|+|++.+..|++++||||
T Consensus 14 ~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 14 RLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred cccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCCc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHH
Q psy14623 109 TGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMA 188 (622)
Q Consensus 109 tt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la 188 (622)
|++++++++||+++.+|+..++||+.|++||+.|+..+++++.+. ...++++..++.|.++++|+++||++....++|+
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~-~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~ 172 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEG-LSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFT 172 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhcc-ceeehhhcchHHHHHHHHhhhcceecccchHHHH
Confidence 999999999999999999999999999999999999999999764 2445666789999999999999999999999999
Q ss_pred HHHHHHHHHhccc---ccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCC
Q psy14623 189 EIAVNAVMAVADL---EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTK 265 (622)
Q Consensus 189 ~lv~~Av~~v~~~---~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~ 265 (622)
+++++|+..+.-. ......++.+.|.|.+|.+..||.++.|+.++...++..||++++|+||++|++.|.-.+.+..
T Consensus 173 ~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lG 252 (545)
T KOG0360|consen 173 EMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLG 252 (545)
T ss_pred HHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccccccccc
Confidence 9999999987521 1112335569999999999999999999999999999999999999999999999988888888
Q ss_pred ceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeecc
Q psy14623 266 HNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVP 345 (622)
Q Consensus 266 ~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~ 345 (622)
..+.+.++++++++++.|....++.+++|.+.|+|||+++++|||.+++||...+++++||+++++|++|+++||+++++
T Consensus 253 v~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~s 332 (545)
T KOG0360|consen 253 VQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLS 332 (545)
T ss_pred ceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEeccC
Q psy14623 346 RFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECE 425 (622)
Q Consensus 346 ~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~ 425 (622)
++.++..+ +.+.+.++|+|+.|.+.+|| ++.++++.+.+
T Consensus 333 Sla~l~ge---------------------------------------etf~~~~lG~a~evvqeri~--dde~ilikg~k 371 (545)
T KOG0360|consen 333 SLANLEGE---------------------------------------ETFEPASLGSADEVVQERIG--DDELILIKGTK 371 (545)
T ss_pred hhhccccc---------------------------------------cccChhhccchhHHHHHhcc--cceeEEeccCc
Confidence 99886543 23788999999999999999 78899998877
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy14623 426 NSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESI 505 (622)
Q Consensus 426 ~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~i 505 (622)
.. .++|+|||++++.+||++|++|||||+++..++++++||||||+|.+|+-+|++|+.+..++||+++..|+.||..|
T Consensus 372 a~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~i 450 (545)
T KOG0360|consen 372 AT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSI 450 (545)
T ss_pred cc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcc
Confidence 55 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhhcC-------CCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhh
Q psy14623 506 PLALAENSGLSPIETLTEVKSRQVKEV-------NPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKID 578 (622)
Q Consensus 506 p~~L~~NaG~d~~~il~~L~~~~~~~~-------~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD 578 (622)
|++|+-|++.|+.+++++++..|+... ..++|+|+.+|++.|.++.|++||..+|...|+.|+|++..+||+|
T Consensus 451 pktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD 530 (545)
T KOG0360|consen 451 PKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRID 530 (545)
T ss_pred hHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchh
Confidence 999999999999999999999887532 3589999999999999999999999999999999999999999999
Q ss_pred heecCCCCCC
Q psy14623 579 DIRSPNDGIC 588 (622)
Q Consensus 579 ~iI~~~~~~~ 588 (622)
+.|.-.+..+
T Consensus 531 ~li~l~~~~~ 540 (545)
T KOG0360|consen 531 DLIKLLPELQ 540 (545)
T ss_pred hhhhcCcccc
Confidence 9987665543
No 38
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3.1e-84 Score=719.99 Aligned_cols=466 Identities=23% Similarity=0.335 Sum_probs=410.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHH----HHHHHHhhcccc
Q psy14623 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAK----LMVQLSQSQDDE 103 (622)
Q Consensus 28 ~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~ak----ll~~~a~~~~~~ 103 (622)
...+|.++++..+++|..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++ |+++++.+|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 4578899999999999999999999999999999999999999999999999999999999984 888899999999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhh
Q psy14623 104 IGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKC 183 (622)
Q Consensus 104 ~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~ 183 (622)
+||||||+++|+++||+++.++++.|+||..|++||+.|.+.+++.|++++.+++ +++.|.++|+++++.
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~----d~~~L~~VA~ts~~~------ 153 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE----DIQAITQVASISAGN------ 153 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHhccC------
Confidence 9999999999999999999999999999999999999999999999999977664 577899999999884
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCC---Ccc----cccceEEEecCC
Q psy14623 184 HRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM---PKE----LRDVKLAILTCP 256 (622)
Q Consensus 184 ~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~---~~~----~~n~ki~ll~~~ 256 (622)
++.+++++++|+..+++. . .|.+.. .++...++++++|++|+++|.+|+| +++ ++||+|++++++
T Consensus 154 ~~~l~~lv~eAv~~vg~~---g----~i~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~ 225 (529)
T CHL00093 154 DEEVGSMIADAIEKVGRE---G----VISLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKK 225 (529)
T ss_pred hHHHHHHHHHHHHHhccC---C----ceeecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCC
Confidence 899999999999999742 1 144432 2233457799999999999999998 443 789999999999
Q ss_pred CCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHH--HH----CCCcEEeecC--
Q psy14623 257 FEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLL--LQ----KQLPAVRWVG-- 328 (622)
Q Consensus 257 l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L--~~----~~I~~i~~v~-- 328 (622)
|++.+ .+ +.++++.+.+.+++|||++++|++.++++| .+ .+|.++++++
T Consensus 226 le~~~------------~~-----------i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~ 282 (529)
T CHL00093 226 ITLVQ------------QD-----------LLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFG 282 (529)
T ss_pred CCchH------------HH-----------HHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCC
Confidence 98531 12 488999999999999999999999888876 55 4889999884
Q ss_pred ---cccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccccccccc
Q psy14623 329 ---GPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGL 405 (622)
Q Consensus 329 ---~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~ 405 (622)
+++|+|||++|||+++++-..+ +++++++..+|+|+.
T Consensus 283 ~~~k~~l~~ia~~tGa~~i~~~~~~----------------------------------------~~~~~~~~~LG~~~~ 322 (529)
T CHL00093 283 DRRKAMLEDIAILTGGQVITEDAGL----------------------------------------SLETIQLDLLGQARR 322 (529)
T ss_pred cchHHHHHHHHHhhCCEEecccccC----------------------------------------CcCCCCHHHCCcceE
Confidence 4789999999999999841100 112277788999999
Q ss_pred EEEEEeccccceEEEEec---------cCCC-------------------------ceEEEEEeCCCHHHHHHHHHHHHH
Q psy14623 406 VREISFGTTKDHMLVIEE---------CENS-------------------------KAVTIFIRGGNKMIIEEAKRSIHD 451 (622)
Q Consensus 406 v~~~~~g~~~~~~~~~~~---------~~~~-------------------------~~~TIll~G~t~~~l~E~~~~l~d 451 (622)
|++. .++++++++ |... ..+||+|||+|+.+++|++|+++|
T Consensus 323 v~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~D 397 (529)
T CHL00093 323 IIVT-----KDSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLED 397 (529)
T ss_pred EEEe-----cCEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHH
Confidence 9974 367888863 3221 478899999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCChhhhhHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhh
Q psy14623 452 ALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEAD-KISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVK 530 (622)
Q Consensus 452 al~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~-~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~ 530 (622)
|++++++++++| +|||||++|++||.+|++++. ..++++|+++++|++||+.||++|++|||+|+.+++++|+..
T Consensus 398 Al~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--- 473 (529)
T CHL00093 398 AINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ--- 473 (529)
T ss_pred HHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc---
Confidence 999999999998 999999999999999999876 788999999999999999999999999999999999999753
Q ss_pred cCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCC
Q psy14623 531 EVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPND 585 (622)
Q Consensus 531 ~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~ 585 (622)
+.++|||+.+|++.||++.|||||+.||.++|+.|+|+|++||++|++|...+
T Consensus 474 --~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 474 --DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred --CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35899999999999999999999999999999999999999999999998754
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2.1e-83 Score=717.13 Aligned_cols=472 Identities=24% Similarity=0.352 Sum_probs=413.7
Q ss_pred hhhcccH--HHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChh----HHHHHHHHhhc
Q psy14623 27 QKRIIGN--DAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQ 100 (622)
Q Consensus 27 ~~~~~g~--~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~----akll~~~a~~~ 100 (622)
+...+|. ++|+..+++|+.|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++|
T Consensus 57 k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 136 (600)
T PLN03167 57 KELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 136 (600)
T ss_pred ceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhh
Confidence 4567788 79999999999999999999999999999999999999999999999999999995 99999999999
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccc
Q psy14623 101 DDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKII 180 (622)
Q Consensus 101 ~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~ 180 (622)
++++||||||+++|+++||+++.++++.|+||..|++||+.|.+.+++.|++++.+++ + +.|.++|++++++
T Consensus 137 d~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~----d-~~L~~vA~tS~~~--- 208 (600)
T PLN03167 137 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE----D-SELADVAAVSAGN--- 208 (600)
T ss_pred hhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC----H-HHHHHHHHHhccC---
Confidence 9999999999999999999999999999999999999999999999999999976653 2 5799999999886
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccce-eEEeeEEEeecCCCCCC-------CcccccceEEE
Q psy14623 181 NKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDT-MLVKGVVIDKDFSHPQM-------PKELRDVKLAI 252 (622)
Q Consensus 181 ~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS-~li~Giv~~~~~~~~~~-------~~~~~n~ki~l 252 (622)
++.|++++++|+.++++. + .|.++ .|++.+|+ ++++|++|+++|.+||| ++.++|++|++
T Consensus 209 ---~~~i~~liaeAv~~Vg~~---g----~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill 276 (600)
T PLN03167 209 ---NYEVGNMIAEAMSKVGRK---G----VVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLL 276 (600)
T ss_pred ---cHHHHHHHHHHHHHhccC---C----cEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEE
Confidence 679999999999999742 1 14444 68889997 89999999999999954 56678999999
Q ss_pred ecCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHH------HCCCcEEee
Q psy14623 253 LTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLL------QKQLPAVRW 326 (622)
Q Consensus 253 l~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~------~~~I~~i~~ 326 (622)
+++. +++++++ .++++.+.+.+++|||++++|+++++++|. ..++.++++
T Consensus 277 ~d~~-------------i~~~~~l-----------~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~ 332 (600)
T PLN03167 277 VDKK-------------ITNARDL-----------IGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKA 332 (600)
T ss_pred Eccc-------------cCCHHHH-----------HHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEc
Confidence 9863 5677777 677788888999999999999999999999 667889988
Q ss_pred cC-----cccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCccccc
Q psy14623 327 VG-----GPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLG 401 (622)
Q Consensus 327 v~-----~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG 401 (622)
.+ +++|+|||.+|||+++++...+ ++++++++.+|
T Consensus 333 p~~g~~~~~~L~dia~~tGa~~i~~~~~~----------------------------------------~l~~~~~~~LG 372 (600)
T PLN03167 333 PGFGERKSQYLDDIAILTGGTVIREEVGL----------------------------------------SLDKVGKEVLG 372 (600)
T ss_pred ccCCcchHHHHHHHHHhhCCEEecccccC----------------------------------------CcccCCHHHCc
Confidence 75 8899999999999999843111 11126677899
Q ss_pred ccccEEEEE-----eccc------cceEEEEeccC------------------CCceEEEE-EeCCCHHHHHHHHHHHHH
Q psy14623 402 KAGLVREIS-----FGTT------KDHMLVIEECE------------------NSKAVTIF-IRGGNKMIIEEAKRSIHD 451 (622)
Q Consensus 402 ~~~~v~~~~-----~g~~------~~~~~~~~~~~------------------~~~~~TIl-l~G~t~~~l~E~~~~l~d 451 (622)
+|+.|++.. +|.. .+++.+|+++. ..+.+|++ |||+|+.+++|++|+++|
T Consensus 373 ~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~D 452 (600)
T PLN03167 373 TAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 452 (600)
T ss_pred eeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHH
Confidence 999998865 5521 13666666543 02245655 999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHH-HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhh
Q psy14623 452 ALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQY-AFRAFADALESIPLALAENSGLSPIETLTEVKSRQVK 530 (622)
Q Consensus 452 al~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~-~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~ 530 (622)
|++++|+++++| +|||||++|++|+.+|++++.+.++++|+ +++++++||+.||++|++|||+|+.+++++|++.
T Consensus 453 Al~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~--- 528 (600)
T PLN03167 453 ALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN--- 528 (600)
T ss_pred HHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc---
Confidence 999999999999 99999999999999999988777787775 5999999999999999999999999999999743
Q ss_pred cCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCC
Q psy14623 531 EVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGI 587 (622)
Q Consensus 531 ~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~ 587 (622)
++.++|||+.+|++.||++.|||||+.||+++|+.|+++|++||++|++|...+++
T Consensus 529 -~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~ 584 (600)
T PLN03167 529 -DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEP 584 (600)
T ss_pred -CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 24689999999999999999999999999999999999999999999999986543
No 40
>KOG0359|consensus
Probab=100.00 E-value=5.3e-79 Score=618.49 Aligned_cols=502 Identities=30% Similarity=0.462 Sum_probs=477.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCchh
Q psy14623 30 IIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTT 109 (622)
Q Consensus 30 ~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGTt 109 (622)
.....+...|+.++..+.+.+++.+||+|..||++++.|++.+|+||.+.+.+|+++||.+-++..++..|++..|||||
T Consensus 13 ~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGtt 92 (520)
T KOG0359|consen 13 AQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTT 92 (520)
T ss_pred HhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcc
Confidence 44556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHHH
Q psy14623 110 GVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAE 189 (622)
Q Consensus 110 t~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la~ 189 (622)
|+|+|.++|+++|..++.+|+||..|.+||+.|.+.++++|+..+.++ +++.|..+++|++++|......+.+++
T Consensus 93 S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~-----~~~~L~~va~tsl~Tkv~~~la~~lt~ 167 (520)
T KOG0359|consen 93 SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-----DRETLKDVARTSLRTKVHAELADVLTP 167 (520)
T ss_pred eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccch-----hHHHHHHHHHHhhcCcccHHHHhHhHH
Confidence 999999999999999999999999999999999999999999765444 588999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCceeE
Q psy14623 190 IAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLD 269 (622)
Q Consensus 190 lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~~~~ 269 (622)
++++|+..+. .....+|+.++.|.+....+..|+.+++|++++++-.||.||++++|+.|++.|.+|+|.|++.++.+-
T Consensus 168 ~vv~aVl~i~-~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~Einsgff 246 (520)
T KOG0359|consen 168 IVVDSVLCIR-RQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFF 246 (520)
T ss_pred HHHhhheeec-cCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchh
Confidence 9999999887 234568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCC----cEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeecc
Q psy14623 270 VQSVEDYKELRKYEQEKFASMVDKVKATGA----TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVP 345 (622)
Q Consensus 270 i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~----~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~ 345 (622)
+++++|.+.+...|++++.+.+.+++..+. -+||.+++|||..++.|+++||.++||.++..|||+..+||+..+.
T Consensus 247 Ysta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~n 326 (520)
T KOG0359|consen 247 YSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVN 326 (520)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceec
Confidence 999999999999999999999999988764 5688899999999999999999999999999999999999999999
Q ss_pred CccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEeccC
Q psy14623 346 RFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECE 425 (622)
Q Consensus 346 ~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~ 425 (622)
++++ ++|+++|+|+.|++.++| +++|+|+++|+
T Consensus 327 svdd---------------------------------------------Ltp~~LG~aglVye~tlG--EEkfTFIE~~~ 359 (520)
T KOG0359|consen 327 SVDD---------------------------------------------LTPDYLGYAGLVYEYTLG--EEKFTFIEKCN 359 (520)
T ss_pred cccc---------------------------------------------CChhhccccceeEEeecc--ceeeEeeecCC
Confidence 9988 899999999999999999 89999999999
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q psy14623 426 NSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESI 505 (622)
Q Consensus 426 ~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~i 505 (622)
+++.|||+++||+++.+.+.+++++|+|++++++++++.++||+|++|..++.+|+...++.+++.++++++|++||..+
T Consensus 360 ~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~i 439 (520)
T KOG0359|consen 360 NPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVI 439 (520)
T ss_pred CCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCC
Q psy14623 506 PLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPND 585 (622)
Q Consensus 506 p~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~ 585 (622)
|++|++|+|+|+.+.+.+|...|... .+|+|+.+|+..+....||||.+.||.+.|..+.-+|+.||-+|+|+.++.
T Consensus 440 pk~La~nsg~D~qe~l~~l~~e~~~~---~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~ 516 (520)
T KOG0359|consen 440 PKTLAKNSGLDEQETLVSLKKEHEVT---LRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGM 516 (520)
T ss_pred hHHHHHhcCCchHHHHHHHHHhhhhh---hcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999888642 569999999999999999999999999999999999999999999999988
Q ss_pred CC
Q psy14623 586 GI 587 (622)
Q Consensus 586 ~~ 587 (622)
+.
T Consensus 517 ~~ 518 (520)
T KOG0359|consen 517 SS 518 (520)
T ss_pred cc
Confidence 64
No 41
>KOG0357|consensus
Probab=100.00 E-value=5e-72 Score=552.39 Aligned_cols=395 Identities=76% Similarity=1.180 Sum_probs=377.2
Q ss_pred ccCCCCCceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChh
Q psy14623 10 MMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI 89 (622)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~ 89 (622)
..|.+++|++++++++.+.+.+|.++.++++-+.++++++++||+||+|++|+++.+.|++++|||| .|++
T Consensus 4 ~~~~~~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I 74 (400)
T KOG0357|consen 4 AFDEFGRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI 74 (400)
T ss_pred HhHhhcCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH
Confidence 4567889999999998899999999999999999999999999999999999999999999999999 7899
Q ss_pred HHHHHHHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHH
Q psy14623 90 AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIK 169 (622)
Q Consensus 90 akll~~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~ 169 (622)
++++...+..|+.++|||||.+++|++.+++++.+++.+|+||..|.+||..+.+.+++.|.+++.+++
T Consensus 75 akLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e----------- 143 (400)
T KOG0357|consen 75 AKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE----------- 143 (400)
T ss_pred HHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999988877743321
Q ss_pred HHHHhhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccce
Q psy14623 170 TAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVK 249 (622)
Q Consensus 170 va~tsl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~k 249 (622)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCc
Q psy14623 250 LAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGG 329 (622)
Q Consensus 250 i~ll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~ 329 (622)
+...++.+++.|++|++|+|++||+|.++|.+|+..+++||+-
T Consensus 144 -------------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGG 186 (400)
T KOG0357|consen 144 -------------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGG 186 (400)
T ss_pred -------------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCC
Confidence 2677889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEE
Q psy14623 330 PDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREI 409 (622)
Q Consensus 330 ~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~ 409 (622)
.++|.||..||++|+|+|++ ++++.+|+|+.|++.
T Consensus 187 pEiEliAiaT~grIVprF~e---------------------------------------------L~~~kLG~aglVrE~ 221 (400)
T KOG0357|consen 187 PEIELIAIATGGRIVPRFSE---------------------------------------------LTAEKLGFAGLVREI 221 (400)
T ss_pred cceEEEEeecCCeeeccHhh---------------------------------------------hCHhhccccceEEEE
Confidence 99999999999999999888 888899999999999
Q ss_pred EeccccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccc
Q psy14623 410 SFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISS 489 (622)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~ 489 (622)
.||.+++++..++.|++++.+||.+||+++.+++|.+|++|||||++|+.+++.++|+|||++|+.||-.+.+.+.++++
T Consensus 222 sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g 301 (400)
T KOG0357|consen 222 SFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPG 301 (400)
T ss_pred ecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHH
Q psy14623 490 IEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQ 569 (622)
Q Consensus 490 ~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e 569 (622)
.+|+++++||+||++||..|++|+|++|++.++++++.+-...+.++|+|+.-....||.+.+++|++..|++.+..|++
T Consensus 302 ~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ 381 (400)
T KOG0357|consen 302 IEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQ 381 (400)
T ss_pred HHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999998887788999999998889999999999999999999999999
Q ss_pred HHHHHHhhhheecCCCC
Q psy14623 570 LVKMILKIDDIRSPNDG 586 (622)
Q Consensus 570 ~a~~lL~iD~iI~~~~~ 586 (622)
++.|||+||+|+.+++.
T Consensus 382 ~vrMiLKiddv~~~~~~ 398 (400)
T KOG0357|consen 382 MVRMILKIDDVRKPGES 398 (400)
T ss_pred HHHHhhhccceecCCCC
Confidence 99999999999987754
No 42
>KOG0356|consensus
Probab=100.00 E-value=2e-57 Score=476.51 Aligned_cols=475 Identities=21% Similarity=0.308 Sum_probs=405.6
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChh----HHHHHHHHhhcc
Q psy14623 26 EQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQD 101 (622)
Q Consensus 26 ~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~----akll~~~a~~~~ 101 (622)
.+...||.++|...++++..||++|.+|+||+||+++|..+.|.|.|||||.|+.+++.+.++. |+++++.+.+.+
T Consensus 16 ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN 95 (550)
T KOG0356|consen 16 AKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTN 95 (550)
T ss_pred ccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhcc
Confidence 3677899999999999999999999999999999999999999999999999999999998886 999999999999
Q ss_pred ccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccch
Q psy14623 102 DEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 181 (622)
Q Consensus 102 ~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~ 181 (622)
+.+||||||+++|++++..++.+-+.+|.+|..|.+|...+.+..++.|.++++++. ..+.+.++|..|.++
T Consensus 96 ~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vt----t~eeIaqVAtiSAng---- 167 (550)
T KOG0356|consen 96 EEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVT----TPEEIAQVATISANG---- 167 (550)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHhhhcCC----
Confidence 999999999999999999999999999999999999999999999999999988876 578999999999998
Q ss_pred hhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccce-eEEeeEEEeecCCCCCCCcccccceEEEecCCCCCC
Q psy14623 182 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDT-MLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPP 260 (622)
Q Consensus 182 ~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS-~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~ 260 (622)
+.+..+++.+|+.++++ +++ |.|+ .|.+..|. ++++|+.|+++|.+|||.+..+..++ -|..++-+
T Consensus 168 --D~~ig~li~~a~~kvG~---~GV----Itv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~-e~e~~~~l- 234 (550)
T KOG0356|consen 168 --DKEIGNLISDAMKKVGR---KGV----ITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKV-EFENALLL- 234 (550)
T ss_pred --cHHHHHHHHHHHHHhCc---CCe----EEee--cCCccccchhhhhcccccccccCccccccchhhhh-hhhhhhhh-
Confidence 88999999999999973 344 7776 58888865 89999999999999999887655442 12222222
Q ss_pred CCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeec-----------Cc
Q psy14623 261 RPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV-----------GG 329 (622)
Q Consensus 261 ~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v-----------~~ 329 (622)
-++.++++++++ .+.++...+...|||+++++++.++|..|.-|+..+.-.| ++
T Consensus 235 ----l~~kki~~v~~i-----------vp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk 299 (550)
T KOG0356|consen 235 ----LSEKKISSVQSI-----------VPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRK 299 (550)
T ss_pred ----hhhhhhhHHHHH-----------hHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHH
Confidence 144567777776 8999999999999999999999999999998877644332 56
Q ss_pred ccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEE
Q psy14623 330 PDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREI 409 (622)
Q Consensus 330 ~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~ 409 (622)
..+.+++.+|||.++.+-.. . ..++..+..++|.|..+...
T Consensus 300 ~~l~Diai~Tg~~v~~~e~~--~-------------------------------------l~le~~~~~dLG~~~evvvt 340 (550)
T KOG0356|consen 300 NLLKDIAILTGATVFGEELS--T-------------------------------------LNLEDAKLEDLGEVGEVVVT 340 (550)
T ss_pred HhhhHHHHHhhhhhhccchh--h-------------------------------------cccccCchhhcCcceeEEEe
Confidence 77999999999988753111 0 01223556667777666542
Q ss_pred EeccccceEEEEeccC-----------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHH
Q psy14623 410 SFGTTKDHMLVIEECE-----------------------------------NSKAVTIFIRGGNKMIIEEAKRSIHDALC 454 (622)
Q Consensus 410 ~~g~~~~~~~~~~~~~-----------------------------------~~~~~TIll~G~t~~~l~E~~~~l~dal~ 454 (622)
.+...++.+-. ...+++|.++|.++.+++|++.+++|||+
T Consensus 341 -----kd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~daln 415 (550)
T KOG0356|consen 341 -----KDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALN 415 (550)
T ss_pred -----cCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHH
Confidence 23333443211 14689999999999999999999999999
Q ss_pred HHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCC
Q psy14623 455 VVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNP 534 (622)
Q Consensus 455 ~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~ 534 (622)
++++++++| +|||||+++++|+..|......-+..++.+++++.+||..|..++++|||.|+..++.+++. .
T Consensus 416 at~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-------~ 487 (550)
T KOG0356|consen 416 ATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-------D 487 (550)
T ss_pred HHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh-------h
Confidence 999999999 99999999999999999877644556778899999999999999999999999999999982 2
Q ss_pred ceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheecCCCCCC
Q psy14623 535 ALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGIC 588 (622)
Q Consensus 535 ~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~~~~~~~ 588 (622)
.+|||..+|+++||++.||+||+.|.+.+|..|..+|+++++++.+|...+...
T Consensus 488 ~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 488 DYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred hhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 799999999999999999999999999999999999999999999988665444
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=4.3e-38 Score=320.12 Aligned_cols=238 Identities=22% Similarity=0.331 Sum_probs=215.8
Q ss_pred cchhhHHHHHHHHHHHHHHhcccc--cCCCCcc-cEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecC
Q psy14623 179 IINKCHRQMAEIAVNAVMAVADLE--KRDVNFE-LIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTC 255 (622)
Q Consensus 179 ~~~~~~~~la~lv~~Av~~v~~~~--~~~~~~~-~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~ 255 (622)
-.+.|.++|++++++|+..+.+.. ...+|++ +|+|++++|++++||++++|+++++++.++.||++++||||+++++
T Consensus 15 ~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~ 94 (261)
T cd03334 15 NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQG 94 (261)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEee
Confidence 345689999999999999986321 2357776 4999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHH
Q psy14623 256 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELI 335 (622)
Q Consensus 256 ~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~i 335 (622)
+|++++++ +++.+++++.+.|++++.++++++.+.|++|||++++|++.+++||.++||++++++++++|+||
T Consensus 95 ~Le~~~~~-------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rI 167 (261)
T cd03334 95 PLEYQRVE-------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERI 167 (261)
T ss_pred eecccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHH
Confidence 99998875 35688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccc-
Q psy14623 336 AIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTT- 414 (622)
Q Consensus 336 a~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~- 414 (622)
|++|||.+++++.+ .++++.+|+|+.|+++.+|..
T Consensus 168 a~~tGa~ii~~i~~--------------------------------------------~~~~~~lG~~~~v~~~~ig~~~ 203 (261)
T cd03334 168 SRCTGADIISSMDD--------------------------------------------LLTSPKLGTCESFRVRTYVEEH 203 (261)
T ss_pred HHHhCCEEecChhh--------------------------------------------hcCcccCcCcceEEEEEecCcC
Confidence 99999999998542 077788999999999999831
Q ss_pred --cceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy14623 415 --KDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVY 467 (622)
Q Consensus 415 --~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvp 467 (622)
+++++||++|..++.+||+|||+|+..++|.||+++||+++++++..+++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~~~ 258 (261)
T cd03334 204 GRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSFLA 258 (261)
T ss_pred CCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 36899999999999999999999999999999999999999999998886653
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.4e-34 Score=286.18 Aligned_cols=208 Identities=43% Similarity=0.667 Sum_probs=194.7
Q ss_pred HHHHHHHHHhhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcc
Q psy14623 165 EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKE 244 (622)
Q Consensus 165 ~~L~~va~tsl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~ 244 (622)
+.|.++|+|++++|+ +.|.+.+++++++|+..+.+... .++.++|+|++++|++++||++++|++|++++.+++|++.
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~-~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~ 79 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR-MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKR 79 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC-CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeE
Confidence 468999999999999 99999999999999999975322 4567789999999999999999999999999999999999
Q ss_pred cccceEEEecCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEE
Q psy14623 245 LRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAV 324 (622)
Q Consensus 245 ~~n~ki~ll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i 324 (622)
++|+||++++++|++ ||+++++|++.++++|.++||.++
T Consensus 80 ~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~~v 118 (209)
T cd03333 80 LENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIMAV 118 (209)
T ss_pred cCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCEEE
Confidence 999999999999886 999999999999999999999999
Q ss_pred eecCcccHHHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccc
Q psy14623 325 RWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAG 404 (622)
Q Consensus 325 ~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~ 404 (622)
+++++++|+|||++|||++++++++ +++..+|+|+
T Consensus 119 ~~~~~~~l~~ia~~tga~ii~~~~~---------------------------------------------~~~~~lG~~~ 153 (209)
T cd03333 119 RRVKKEDLERIARATGATIVSSLED---------------------------------------------LTPEDLGTAE 153 (209)
T ss_pred EeCCHHHHHHHHHHHCCEEeccccc---------------------------------------------CChhhceeee
Confidence 9999999999999999999998776 6777899999
Q ss_pred cEEEEEeccccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14623 405 LVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTE 462 (622)
Q Consensus 405 ~v~~~~~g~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~ 462 (622)
.+++..+| ++++++|++|..++.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 154 ~v~~~~~~--~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 154 LVEETKIG--EEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred EEEEEEEC--CeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999998 689999999999999999999999999999999999999999999864
No 45
>KOG0230|consensus
Probab=99.85 E-value=1.3e-20 Score=217.05 Aligned_cols=242 Identities=23% Similarity=0.327 Sum_probs=211.2
Q ss_pred hhHHHHHHHHHHHHHHhcccc--cCCCCc-ccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCC
Q psy14623 182 KCHRQMAEIAVNAVMAVADLE--KRDVNF-ELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFE 258 (622)
Q Consensus 182 ~~~~~la~lv~~Av~~v~~~~--~~~~~~-~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~ 258 (622)
.|.+.+..++++|...+.+.. .+.+|+ .+++|++++||...||+++.|+++.+..++..|.++.+++||+++.++++
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~le 411 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLE 411 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchh
Confidence 588999999999999987643 233444 47999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHH
Q psy14623 259 PPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIV 338 (622)
Q Consensus 259 ~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~ 338 (622)
+++..- .+.+ ++.+.++|.++++.+|.+|...+++++++.++|+..|+++|...+|.++.++++.-|+||+++
T Consensus 412 yqrisn----~lsS---~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~ 484 (1598)
T KOG0230|consen 412 YQRISN----QLSS---IETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRC 484 (1598)
T ss_pred hhhhhc----cccc---hHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHH
Confidence 986421 2343 444556689999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEecc---cc
Q psy14623 339 TGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGT---TK 415 (622)
Q Consensus 339 tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~---~~ 415 (622)
|||.|+++++. ++...+|+|+.+++..+-- ..
T Consensus 485 tga~I~~siDs---------------------------------------------lt~~klg~C~~F~v~~~~e~hk~s 519 (1598)
T KOG0230|consen 485 TGADIVPSVDS---------------------------------------------LTSQKLGYCELFRVENYVEEHKPS 519 (1598)
T ss_pred hcCceecchhh---------------------------------------------hhccccCCCccHhhhhhhhcccch
Confidence 99999999887 6667799999888755431 14
Q ss_pred ceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhh
Q psy14623 416 DHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVS 475 (622)
Q Consensus 416 ~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ 475 (622)
+.++||++|+....|||+|||....++.++++.++-++.++.+..-+-+++..-|+....
T Consensus 520 KTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~ 579 (1598)
T KOG0230|consen 520 KTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISS 579 (1598)
T ss_pred hhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcccc
Confidence 678899999999999999999999999999999999999999988887788888876543
No 46
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=58.80 E-value=36 Score=28.24 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHH
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIEL 334 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ 334 (622)
.+.+.+...++++||+. .+.+.+...|.++||.++.. ...+++.
T Consensus 44 ~~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~-~~~~i~~ 87 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQG-AGGDIEE 87 (94)
T ss_dssp HHHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEES-TSSBHHH
T ss_pred hHHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEc-CCCCHHH
Confidence 34455666799999884 89999999999999999987 4444444
No 47
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=53.10 E-value=52 Score=29.55 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecC
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG 328 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~ 328 (622)
.+.+.|++.|+++|++. .+.+.+.++|...||.+..-.+
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCC
Confidence 46678899999999995 8999999999999999988665
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=48.89 E-value=41 Score=28.43 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHH
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIEL 334 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ 334 (622)
...+.|...++++|++. .+.+.+.+.|.++||.++.... ..++.
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~ 97 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEE 97 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHH
Confidence 45566666899999995 7999999999999999997655 44444
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=38.16 E-value=94 Score=26.08 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=31.8
Q ss_pred HHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecC
Q psy14623 290 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG 328 (622)
Q Consensus 290 ~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~ 328 (622)
..+.+...++++|++. .+.+.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 4455666899999996 6999999999999999987655
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=36.84 E-value=1.4e+02 Score=25.02 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCCHHHHH----HHHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 288 ASMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 288 ~~~v~~l~~~g~~lVi~~~~I~~~al~----~L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
++-++.+.+-.+.+|++++++++.... ++.+++|..+.--+ ++.|-++||-.
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s---~~~LGkAcgi~ 74 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS---KHALGKHVGIN 74 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC---HHHHHHHhCCC
Confidence 455666766778999999999987665 66789999876444 45556666643
No 51
>PRK07283 hypothetical protein; Provisional
Probab=36.80 E-value=1.3e+02 Score=25.83 Aligned_cols=50 Identities=10% Similarity=-0.004 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHH----HHHHHCCCcEEeecCcccHHHHHHHhCC
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRWVGGPDIELIAIVTGG 341 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al----~~L~~~~I~~i~~v~~~~L~~ia~~tGa 341 (622)
...+.+.+-.+.+||.+.+.++... +.+..+++.++.... .+.|..++|=
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t---~~eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFS---TLELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCC---HHHHHHHhCC
Confidence 4456666667899999999999888 666677999976654 4567788883
No 52
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=29.93 E-value=1.7e+02 Score=26.21 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCcEEEEecCCCHH-H----HHHHHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 289 SMVDKVKATGATLAICQWGFDDE-A----NHLLLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~-a----l~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
..++.+.+..+.+||++.++++. . ..++.+++|..+..-.+ ++|..++|-.
T Consensus 37 ~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk---~eLG~a~Gk~ 92 (122)
T PRK04175 37 ETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK---KDLGKAAGLE 92 (122)
T ss_pred HHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHhCCC
Confidence 44555666678999999999773 2 34567889997665544 5666777743
No 53
>PRK07714 hypothetical protein; Provisional
Probab=28.79 E-value=2e+02 Score=24.58 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHHHH----HHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEANHL----LLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al~~----L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
...+.+.+-.+.+||++.+.++....- +..+++.++....+ +.|..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk---~eLG~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR---QQLGHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH---HHHHHHhCCC
Confidence 445666667789999999999876554 46778998876554 5567777743
No 54
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=28.57 E-value=1.8e+02 Score=25.81 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCcEEEEecCCCHH-H----HHHHHHCCCcEEeecCcccHHHHHHHhCC
Q psy14623 289 SMVDKVKATGATLAICQWGFDDE-A----NHLLLQKQLPAVRWVGGPDIELIAIVTGG 341 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~-a----l~~L~~~~I~~i~~v~~~~L~~ia~~tGa 341 (622)
..++.+.+-.+.+||++.++++. . .+++...+|..+..-++ ++|..++|-
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk---~eLG~a~Gk 87 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK---EDLGAAAGL 87 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 44555666668999999999763 3 44578899997765554 556667774
No 55
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=28.32 E-value=54 Score=29.51 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCC--CHHHHHHHHHCCCcEEee
Q psy14623 275 DYKELRKYEQEKFASMVDKVKATGATLAICQWGF--DDEANHLLLQKQLPAVRW 326 (622)
Q Consensus 275 ~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I--~~~al~~L~~~~I~~i~~ 326 (622)
|+.-+.+...+...+.++++...++++||++.+. ++..++.+.++++.+++-
T Consensus 58 E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 58 ESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred HHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 3444444444445788899999999999998876 678888999999998873
No 56
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=27.98 E-value=2.6e+02 Score=24.51 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHH----HHHHHHCCCcEEeecCcccHHHHHHHhCC
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEA----NHLLLQKQLPAVRWVGGPDIELIAIVTGG 341 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~a----l~~L~~~~I~~i~~v~~~~L~~ia~~tGa 341 (622)
..++.+.+..+.+||++.+.++.. .+++..++|.++.... .-+.|..++|=
T Consensus 32 ~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~--t~~eLG~A~Gk 86 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAG--NNNDLGTACGR 86 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCC--CHHHHHHHhCC
Confidence 445666667789999999998874 4566788999876432 33567778883
No 57
>smart00574 POX domain associated with HOX domains.
Probab=27.10 E-value=1.6e+02 Score=27.08 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhc
Q psy14623 440 MIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEAD 485 (622)
Q Consensus 440 ~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~ 485 (622)
.+++|++++.+-...-++.++-.=-.|+|+|++-.+.+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4667777777777666666655434689999999988888876553
No 58
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=25.42 E-value=1.5e+02 Score=27.27 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhc
Q psy14623 440 MIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEAD 485 (622)
Q Consensus 440 ~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~ 485 (622)
.+++|+++++.-...-++.++-.=-.|.|.|++-.+.+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSr 129 (140)
T PF07526_consen 84 SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 4677777777666666655554433688999999998888886554
No 59
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=25.28 E-value=61 Score=35.68 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhcc
Q psy14623 447 RSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADK 486 (622)
Q Consensus 447 ~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~ 486 (622)
+.+.+|+..+|++ +.|-+|.|||+-+-.+...|+.+++.
T Consensus 217 ~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 217 RELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 5677888888887 66779999999999999999988764
No 60
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.40 E-value=2.8e+02 Score=22.85 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCcEEEEecCCCHHHHH----HHHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 288 ASMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 288 ~~~v~~l~~~g~~lVi~~~~I~~~al~----~L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
...++.+.+-.+.+||++.+.++.... ++..++|.++.--. .+.|..++|-.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s---~~eLG~a~G~~ 72 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDS---MKKLGKACGIE 72 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECC---HHHHHHHHCCC
Confidence 345566666778999999999987654 45788998876443 35667777643
No 61
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.62 E-value=2.9e+02 Score=22.95 Aligned_cols=51 Identities=8% Similarity=0.095 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHHH----HHHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al~----~L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
..++.+.+..+.+||++.+.++.... ++..++|.+...- ..+.|.+++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~---t~~eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID---TMKELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC---CHHHHHHHHCCc
Confidence 44566667788999999999987665 4567899996543 446677777754
No 62
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=22.83 E-value=1.8e+02 Score=28.23 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCC----CcEEeecC
Q psy14623 285 EKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQ----LPAVRWVG 328 (622)
Q Consensus 285 ~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~----I~~i~~v~ 328 (622)
..++++++.++..++++++++.+.++..-.+|.+-. |.++..++
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 367899999999999999999999998888887644 66655443
No 63
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=22.65 E-value=1.4e+02 Score=24.93 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCcEEEEecCCCHHHH-----HHHHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 288 ASMVDKVKATGATLAICQWGFDDEAN-----HLLLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 288 ~~~v~~l~~~g~~lVi~~~~I~~~al-----~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
.+..+.+.+..+.+||.+.++++... .++.+++|.++... .-+.|.+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~---s~~eLG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP---SKEELGRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES---HHHHHHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC---CHHHHHHHHCCC
Confidence 44556666667899999999987443 46788999997755 445667777654
No 64
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=22.54 E-value=3e+02 Score=23.92 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHHHHH----HHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEANHLL----LQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al~~L----~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
...+.+.+-.+.+||.+.+.++.-..-+ ...++.++....+ +.|..++|-.
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~---~eLg~a~Gk~ 78 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSK---EELGNAIGRD 78 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCH---HHHHHHhCCC
Confidence 4456666677899999999988665544 5578998877555 4567777744
No 65
>PRK06683 hypothetical protein; Provisional
Probab=22.21 E-value=3.2e+02 Score=22.60 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHHH----HHHHCCCcEEeecCcccHHHHHHHhCCe
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRWVGGPDIELIAIVTGGR 342 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al~----~L~~~~I~~i~~v~~~~L~~ia~~tGa~ 342 (622)
..++.+.+..+.+||++.+.++...+ ++..++|.++..- ..+.|..++|-.
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~---t~~eLG~A~G~~ 72 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE---SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC---CHHHHHHHhCCc
Confidence 44566666778999999999987655 4578899986644 456677787754
No 66
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=20.91 E-value=2.6e+02 Score=23.92 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecC
Q psy14623 289 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG 328 (622)
Q Consensus 289 ~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~ 328 (622)
..++.+ .++++||+ +++.+.+...|.++||.++..-.
T Consensus 58 ~~l~~l--~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 58 AIIKLL--SDCDAVLC-AKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred HHHHHH--cCCcEEee-hhhCccHHHHHHHCCCEEEEecC
Confidence 344444 58999888 59999999999999999985433
No 67
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.08 E-value=2.9e+02 Score=25.92 Aligned_cols=50 Identities=28% Similarity=0.266 Sum_probs=35.0
Q ss_pred HHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEee-cC------cccHHHHHHHhCC
Q psy14623 292 DKVKATGATLAICQWGFDDEANHLLLQKQLPAVRW-VG------GPDIELIAIVTGG 341 (622)
Q Consensus 292 ~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~-v~------~~~L~~ia~~tGa 341 (622)
|.|.+.+++|||............|.+.++.++.- .. .+.++.+++++|-
T Consensus 54 E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 54 EKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 55677799999987666666778899999976432 21 2456677777764
Done!