RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14623
(622 letters)
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 1013 bits (2621), Expect = 0.0
Identities = 405/571 (70%), Positives = 472/571 (82%), Gaps = 45/571 (7%)
Query: 12 DEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVT 71
DE+GRPFII+R Q+++KR+ G +A KSHI+AAK++AN L+TSLGP+G+DK++VS DG+VT
Sbjct: 1 DEYGRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVT 60
Query: 72 VTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIH 131
VTNDGATIL+ MDVDH+IAKL+V+LS+SQDDEIGDGTTGVVVLAGALLEQAE LLD+GIH
Sbjct: 61 VTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIH 120
Query: 132 PIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIA 191
PIRIADG+E A + AV+HLE IAD +PDN EPLI+TAMT+LGSKI+++CHRQ AEIA
Sbjct: 121 PIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIA 180
Query: 192 VNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLA 251
V+AV++VADLE++DVNFELIKVEGKVGG+LEDT LVKG+VIDKDFSHPQMPKE++D K+A
Sbjct: 181 VDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIA 240
Query: 252 ILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDE 311
ILTCPFEPP+PKTKH LD+ SVEDYK+L++YEQ+ F MV++VK GA L ICQWGFDDE
Sbjct: 241 ILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDE 300
Query: 312 ANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSH 371
ANHLLLQ LPAVRWVGG
Sbjct: 301 ANHLLLQNGLPAVRWVGGV----------------------------------------- 319
Query: 372 AGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVT 431
+IELIAI TGGRIVPRFE+L+ EKLGKAGLVREISFGTTKD MLVIE C NSKAVT
Sbjct: 320 ----EIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVT 375
Query: 432 IFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIE 491
IFIRGGNKMIIEEAKRS+HDALCVVRNL+ +NR+VYGGGAAE+SC++AV ADK S IE
Sbjct: 376 IFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIE 435
Query: 492 QYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQ 551
QYA RAFADALESIPLALAENSGL+PIETL+EVK+RQVKE NP LGIDC+ GTNDMK+Q
Sbjct: 436 QYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQ 495
Query: 552 NVIEALRSKKQQILLSTQLVKMILKIDDIRS 582
V E L SKKQQILL+TQ+VKMILKIDD+
Sbjct: 496 KVFETLISKKQQILLATQVVKMILKIDDVIV 526
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 889 bits (2298), Expect = 0.0
Identities = 386/575 (67%), Positives = 467/575 (81%), Gaps = 45/575 (7%)
Query: 9 LMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDG 68
L DE+GRPFII+++Q +KR+ G +A KS+I AAK++A+ L+TSLGPKG+DKM++S DG
Sbjct: 2 LAFDEYGRPFIIIKDQDNKKRLKGLEAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDG 61
Query: 69 DVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDK 128
D+TVTNDGATIL MDVD+ IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLEQAE LLDK
Sbjct: 62 DITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEELLDK 121
Query: 129 GIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMA 188
GIHPI+IA+GFE AA+ AV+HLE I+D + +N EPLI+ A T+LGSKI++KCHR+ A
Sbjct: 122 GIHPIKIAEGFEEAARVAVEHLEEISDEISADNNNREPLIQAAKTSLGSKIVSKCHRRFA 181
Query: 189 EIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDV 248
EIAV+AV+ VAD+E+RDV+F+LIKVEGKVGG LEDT L+KG++IDKDFSHPQMPKE++D
Sbjct: 182 EIAVDAVLNVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDA 241
Query: 249 KLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGF 308
K+AILTCPFEPP+PKTKH LD+ SVE+YK+L+KYEQ+KF M+D +K +GA + ICQWGF
Sbjct: 242 KIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGF 301
Query: 309 DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQ 368
DDEANHLLLQ LPAVRWVGG
Sbjct: 302 DDEANHLLLQNDLPAVRWVGGQ-------------------------------------- 323
Query: 369 RSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSK 428
++ELIAI TGGRIVPRF+EL+ +KLGKAGLVREISFGTTKD MLVIE+C+NSK
Sbjct: 324 -------ELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCKNSK 376
Query: 429 AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKIS 488
AVTIFIRGGNKMIIEEAKRSIHDALCVVRNL+ ++R+VYGGGAAE+SC++AV+ EADK S
Sbjct: 377 AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAVSQEADKYS 436
Query: 489 SIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDM 548
+EQYA RAFADALE+IP+ALAENSGL PI TL+ +KS Q+KE NP +G+DC+ GTNDM
Sbjct: 437 GVEQYAIRAFADALETIPMALAENSGLDPIGTLSTLKSLQLKEKNPNIGVDCLGYGTNDM 496
Query: 549 KQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSP 583
K+Q V E L KKQQILL+TQLV+MILKIDD+ SP
Sbjct: 497 KEQFVFETLIGKKQQILLATQLVRMILKIDDVISP 531
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 558 bits (1441), Expect = 0.0
Identities = 214/549 (38%), Positives = 298/549 (54%), Gaps = 92/549 (16%)
Query: 32 GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAK 91
G +A S+I AAK +A+ +KT+LGPKG+DKM+V S GD T+TNDGATILK ++V+H AK
Sbjct: 6 GEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAK 65
Query: 92 LMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLE 151
L+V++++SQDDE+GDGTT VVVLAG LL++AE LL GIHP I G+E A + A++ L+
Sbjct: 66 LLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILK 125
Query: 152 TIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELI 211
IA P++ ++ E L+K A T+L SK+++ + E+ V+AV+ V E DV+ +I
Sbjct: 126 EIAV--PIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGK-ENGDVDLGVI 182
Query: 212 KVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQ 271
+VE K GG LED+ LV G+V DK + P MPK L + K+ +L C E
Sbjct: 183 RVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY------------ 230
Query: 272 SVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPD 331
+ I + G DDEA H L + + AVR V
Sbjct: 231 -----------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRK-- 259
Query: 332 IELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPR 391
D+E IA TG IV R
Sbjct: 260 -------------------------------------------EDLERIAKATGATIVSR 276
Query: 392 FEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHD 451
E+LT E LG AGLV E G K IE C+ K TI +RG ++ ++EA+RS+HD
Sbjct: 277 LEDLTPEDLGTAGLVEETKIGDEK--YTFIEGCKGGKVATILLRGATEVELDEAERSLHD 334
Query: 452 ALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAE 511
ALC VR V + +V GGGAAE+ + A+ A + EQ AFADALE IP LAE
Sbjct: 335 ALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAE 394
Query: 512 NSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLV 571
N+GL PIE +T+++++ + A G D DMK+ +I+ L+ K+Q + +T+
Sbjct: 395 NAGLDPIEVVTKLRAKHAEGGGNA-GGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAA 453
Query: 572 KMILKIDDI 580
+IL IDDI
Sbjct: 454 SLILTIDDI 462
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 491 bits (1267), Expect = e-169
Identities = 228/564 (40%), Positives = 335/564 (59%), Gaps = 54/564 (9%)
Query: 19 IILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGAT 78
+IL+ + +R G DA + +I AAK +A ++T+LGPKG+DKM+V S GDVT+TNDGAT
Sbjct: 2 LILK--EGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGAT 59
Query: 79 ILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADG 138
ILK MD++H AK++V+++++QD+E+GDGTT VVLAG LLE+AE LLD+ IHP I +G
Sbjct: 60 ILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEG 119
Query: 139 FELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAV 198
+ LAA+ A++ L+ IA V+PD+ + L K A T+L K ++A++ V+AV+ V
Sbjct: 120 YRLAAEKALELLDEIAI--KVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQV 177
Query: 199 ADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCP 256
A+ K V+ + IK+E K GG ++DT L++G+VIDK+ HP MPK + + K+A+L P
Sbjct: 178 AEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAP 237
Query: 257 FEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLL 316
E + + + + S + + + E+ MVDK+ TGA + CQ G DD A H L
Sbjct: 238 LEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYL 297
Query: 317 LQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTD 376
+ + AVR V D+E +A TG +IV T+
Sbjct: 298 AKAGILAVRRVKKSDMEKLARATGAKIV------------------------------TN 327
Query: 377 IELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRG 436
I ++LT E LG+A LV E G D M+ +E C+N KAVTI +RG
Sbjct: 328 I---------------DDLTPEDLGEAELVEERKVG--DDKMVFVEGCKNPKAVTILLRG 370
Query: 437 GNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFR 496
G + +++E +R++ DAL VV + + + +VV GGGA E+ A + A + EQ A
Sbjct: 371 GTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVE 430
Query: 497 AFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEA 556
AFADALE IP LAEN+GL PI+TL E+++ ++ N G+D DM ++ VIE
Sbjct: 431 AFADALEEIPRTLAENAGLDPIDTLVELRAAH-EKGNKNAGLDVYTGEVVDMLEKGVIEP 489
Query: 557 LRSKKQQILLSTQLVKMILKIDDI 580
LR KKQ I +T+ MIL+IDD+
Sbjct: 490 LRVKKQAIKSATEAATMILRIDDV 513
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 464 bits (1196), Expect = e-159
Identities = 189/535 (35%), Positives = 288/535 (53%), Gaps = 59/535 (11%)
Query: 46 IANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIG 105
+A+ +KT+LGPKG +KM+V+ G +T+TNDGATILK +++ H AKL+V+ ++SQD+E+G
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPAAKLLVEAAKSQDEEVG 60
Query: 106 DGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLE 165
DGTT VVLAG LLE+AE L++ GIHP I G+ELA + A+K LE ++ D+ E
Sbjct: 61 DGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPV---SDDDE 117
Query: 166 PLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTM 225
L+ A T+L SKI ++ + ++ V+AV+ + + I V GG LED+
Sbjct: 118 DLLNVARTSLNSKISSRESELLGKLVVDAVLLI----IEKFDVGNIGVIKIEGGSLEDSE 173
Query: 226 LVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQE 285
L++G+V+DK + P MPK L + K+ +L CP E + + + E+ + L + E++
Sbjct: 174 LIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEKVIIS---TAEELERLLEAEEK 230
Query: 286 KFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVP 345
+ +++K+ G L I Q G DD A H L + + A+R V
Sbjct: 231 QLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRV------------------ 272
Query: 346 RFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGL 405
D+E +A TG +V ++L ++LG AG
Sbjct: 273 ---------------------------KKEDLERLAKATGATVVSSLDDLEPDELGSAGK 305
Query: 406 VREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRV 465
V E G +D IE C + K TI +RG ++E +R+I DAL V+ + + V
Sbjct: 306 VEEREIG--EDKTTFIEGCLSGKVATILLRGATDHELDELERAIEDALNAVKAALKDEGV 363
Query: 466 VYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVK 525
V GGGAAE+ + A+ A +S EQ AFA+ALE IP LAEN+GL PIE L ++K
Sbjct: 364 VPGGGAAELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPIEVLAKLK 423
Query: 526 SRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ K LGID DMK+ +I+ L+ K+ + + ++ +IL ID I
Sbjct: 424 AAHKK--GNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQI 476
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 456 bits (1176), Expect = e-155
Identities = 226/568 (39%), Positives = 334/568 (58%), Gaps = 56/568 (9%)
Query: 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDG 76
P IL+ + +R G DA +++I AAK +A +K++LGP+G+DKM+V S GDVT+TNDG
Sbjct: 1 PVFILK--EGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDG 58
Query: 77 ATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIA 136
ATILK MD++H AK++V+++++QD+E+GDGTT VVLAG LLE+AE LL++ IHP I
Sbjct: 59 ATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVII 118
Query: 137 DGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQ-MAEIAVNAV 195
+G+ AA+ A++ ++ IA ++P++ + L K A T+L SK + + +A + V AV
Sbjct: 119 EGYRKAAEKALEIIDEIATK--ISPEDRDLLKKVAETSLTSKASAEVAKDKLANLVVEAV 176
Query: 196 MAVADLE---KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAI 252
VA+L K V+ + IK+ K GG ++DT LV+G+V+DK+ HP MPK + + K+A+
Sbjct: 177 KQVAELRGDGKYYVDLDNIKIVKKTGGSIDDTELVEGIVVDKEVVHPGMPKRVENAKIAL 236
Query: 253 LTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEA 312
L P E + + + + + ++ E+ MVDK+ GA + ICQ G DD A
Sbjct: 237 LDAPLEVEKTEIDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVA 296
Query: 313 NHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHA 372
H L + + AVR V ++S
Sbjct: 297 QHYLAKAGILAVRRV----------------------------------------KKS-- 314
Query: 373 GHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTI 432
DIE +A TG RIV +E+T LG AGLV E G +D M+ +E C+N KAVTI
Sbjct: 315 ---DIEKLARATGARIVSSIDEITESDLGYAGLVEERKVG--EDKMVFVEGCKNPKAVTI 369
Query: 433 FIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQ 492
+RGG + +++E +RS+ DAL VV + + + +VV GGGA E+ A+ + + A KI EQ
Sbjct: 370 LLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEIALRLRSYARKIGGREQ 429
Query: 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQN 552
A AFADALE IP LAEN+GL PI+ L E++++ K N GI+ DM +
Sbjct: 430 LAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKG-NKNAGINVFTGEIEDMLELG 488
Query: 553 VIEALRSKKQQILLSTQLVKMILKIDDI 580
VIE LR K+Q I +T+ MIL+IDD+
Sbjct: 489 VIEPLRVKEQAIKSATEAATMILRIDDV 516
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 456 bits (1176), Expect = e-155
Identities = 191/563 (33%), Positives = 292/563 (51%), Gaps = 65/563 (11%)
Query: 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD 86
++R G DA +S+I AA+ +A+ +KT+LGPKG +KM+V S GD+T+TNDG TILK ++++
Sbjct: 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELE 63
Query: 87 HEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
H AKL+V++++ QDDE GDGTT VVLAGALL++AE L+ GIHP I G+ LA + A
Sbjct: 64 HPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKA 123
Query: 147 VKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDV 206
V+ L+ IA PV+ E +K A+T++ SK N ++ E+ V AV V K
Sbjct: 124 VEELKEIA--KPVSDSEEE--LKIAITSVASKSANS-DEEIGELVVEAVEKVG---KEQS 175
Query: 207 NFELIKVEGKVGGKLEDTMLVKGVVIDK-DFSHPQMP-KELRDVKLAILTCPFEPPRPKT 264
+ + I + + GG + +V+G+V DK S MP K L + K+ +L E +P+
Sbjct: 176 DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPEL 235
Query: 265 KHNLDVQSVEDYKELRKYE-QEKFASMVDKVKATGAT-LAICQWGFDDEANHLLLQKQLP 322
+ + S + + + E E A++V + GA + + G DD A L +
Sbjct: 236 PLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAIL 295
Query: 323 AVRWVGGPDI-ELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIA 381
R V D+ E +A + G +IV ++LT+ LG+
Sbjct: 296 TGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGE------------------------ 331
Query: 382 IVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENS--KAVTIFIRGGNK 439
G AGLV E G M ++E + TI +RG +
Sbjct: 332 -------------------GAAGLVEETKTG--DYDMEKLQERKAKAGGVATILVRGATE 370
Query: 440 MIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKIS-SIEQYAFRAF 498
+ ++E +R I DAL VVR V E ++V GGGAAE+ A+ + A + EQ AF
Sbjct: 371 VELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAF 430
Query: 499 ADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCM-LNGTNDMKQQNVIEAL 557
A ALE+ P LAEN+GL PIE L++++S GID +DM + +I+ L
Sbjct: 431 ARALEAPPRQLAENAGLDPIEVLSKLRS---AHATTNYGIDAFTGEYEDDMIEAGIIDPL 487
Query: 558 RSKKQQILLSTQLVKMILKIDDI 580
+ K+ + + + ++L IDDI
Sbjct: 488 KVKRSALKNAAEAAGLLLTIDDI 510
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 405 bits (1043), Expect = e-135
Identities = 212/563 (37%), Positives = 318/563 (56%), Gaps = 72/563 (12%)
Query: 33 NDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKL 92
D S+I AAK +A+ ++TSLGP+G+DKM+ + G+V +TNDGATILK M V H AK+
Sbjct: 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKM 66
Query: 93 MVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLET 152
+V+LS++QD E GDGTT VVVLAGALL E LL KGIHP I++ F++AA+ AV+ L++
Sbjct: 67 LVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDS 126
Query: 153 IADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEK-RDVNFELI 211
+ S PV+ ++ E LIK+A T+L SK++++ +A IAV+AV+ V D +V+ + I
Sbjct: 127 M--SIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDI 184
Query: 212 KVEGKVGGKLEDTMLVKGVVIDKDFSH-PQMPKELRDVKLAILTCPFEPPRPKTKHNLDV 270
++ K+GG +EDT LV G+V + S P + K+ ++ PP+ +N+
Sbjct: 185 RIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNI-- 242
Query: 271 QSVEDY-------KELRKYEQEKFASMVDKVKATGATLAICQW-----GFDDEANHLLLQ 318
V DY +E RKY +M K+K +G + + Q D A H L +
Sbjct: 243 -VVNDYAQMDRILREERKY----ILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK 297
Query: 319 KQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIE 378
++ V+ DIE +IE
Sbjct: 298 LKIMVVK-----DIE----------------------------------------REEIE 312
Query: 379 LIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENS-KAVTIFIRGG 437
I G + V + T +KLG A LV E+S G K ++ I +N K VTI +RG
Sbjct: 313 FICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGK--IVKITGVKNPGKTVTILVRGS 370
Query: 438 NKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRA 497
NK++++EA+RS+HDALCV+R LV + ++ GGGA E+ A+ ++ A ++ +EQY RA
Sbjct: 371 NKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRA 430
Query: 498 FADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEAL 557
FADALE IP LAEN+GL+PI +TE+++R + GI+ ++ ++NV++ L
Sbjct: 431 FADALEVIPYTLAENAGLNPISIVTELRNRH-AQGEKNAGINVRKGAITNILEENVVQPL 489
Query: 558 RSKKQQILLSTQLVKMILKIDDI 580
I L+T+ V+MILKIDDI
Sbjct: 490 LVSTSAITLATETVRMILKIDDI 512
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 380 bits (977), Expect = e-125
Identities = 203/556 (36%), Positives = 311/556 (55%), Gaps = 58/556 (10%)
Query: 33 NDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKL 92
D S+IVAAK +A+ ++TSLGPKG+DKM+ G+V +TNDGATILK M V H AK+
Sbjct: 8 QDVRTSNIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPAAKM 67
Query: 93 MVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLET 152
+V+LS++QD E GDGTT VV+LAGALL E LL+KGIHP I++ F+ AA A+K L+
Sbjct: 68 LVELSKAQDIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIKILDE 127
Query: 153 IADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEK-RDVNFELI 211
+ S PV+ + E L+K+A T+L SK++++ +A +AV+AV+ V D E ++V+ I
Sbjct: 128 M--SIPVDLSDREQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENAKNVDLNDI 185
Query: 212 KVEGKVGGKLEDTMLVKGVVIDKDFSHPQ-MPKELRDVKLAILTCPFEPPRPKTKHNLDV 270
KV K+GG ++DT L++G+V + S P + K+ ++ PP+ ++ + V
Sbjct: 186 KVVKKLGGTIDDTELIEGLVFTQKASKSAGGPTRIEKAKIGLIQFQISPPKTDMENQIIV 245
Query: 271 QSVEDYKELRKYEQEKFASMVDKVKATGATLAICQW-----GFDDEANHLLLQKQLPAVR 325
+ K E+ ++V K+K TG + + Q +D A H L + ++ V+
Sbjct: 246 NDYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVK 305
Query: 326 WVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTG 385
DIE +IE I G
Sbjct: 306 -----DIE----------------------------------------REEIEFICKTIG 320
Query: 386 GRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECEN-SKAVTIFIRGGNKMIIEE 444
+ + + T++KLG A LV E+ K ++ I +N K VT+ +RG NK++I+E
Sbjct: 321 CKPIASIDHFTADKLGSAELVEEVDSDGGK--IIKITGIQNAGKTVTVVVRGSNKLVIDE 378
Query: 445 AKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALES 504
A+RS+HDALCV+R LV + ++ GGGA E+ A ++ A + +E Y RAFADALE
Sbjct: 379 AERSLHDALCVIRCLVKKRGLIAGGGAPEIEIARRLSKYARTMKGVESYCVRAFADALEV 438
Query: 505 IPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQI 564
IP LAEN+GL+PI+ +TE+++R GI G +M +++V++ L I
Sbjct: 439 IPYTLAENAGLNPIKVVTELRNRHANG-EKTAGISVRKGGITNMLEEHVLQPLLVTTSAI 497
Query: 565 LLSTQLVKMILKIDDI 580
L+++ V+ ILKIDDI
Sbjct: 498 TLASETVRSILKIDDI 513
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 332 bits (853), Expect = e-107
Identities = 179/568 (31%), Positives = 288/568 (50%), Gaps = 95/568 (16%)
Query: 20 ILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATI 79
+L Q KR G A +I AAK +A+ ++T LGP+ + KM++ G + +TNDG I
Sbjct: 2 VLVLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAI 61
Query: 80 LKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGF 139
L+ +DV H AK M++LS++QD+E+GDGTT V++LAG +L AE L++GIHP I +
Sbjct: 62 LREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAY 121
Query: 140 ELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVA 199
A + A+K LE I S PV+ ++ ++K + +G+K +++ M +A++AV VA
Sbjct: 122 RKALEDALKILEEI--SIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVA 179
Query: 200 DLEKRDVNFEL-----IKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILT 254
+E+ E+ KVE GG++ED+ ++ GV+++KD +HP+M + + + ++ +L
Sbjct: 180 -VEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLD 238
Query: 255 CPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANH 314
CP E Y L I + G D A H
Sbjct: 239 CPLE-----------------Y------------------------LVITEKGVSDLAQH 257
Query: 315 LLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGH 374
L++ + A+R V D IA G IV R EELT +G
Sbjct: 258 YLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAG-------------- 303
Query: 375 TDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFI 434
FE V++I ++ I EC++ KA TI +
Sbjct: 304 ----------------LFE------------VKKI----GDEYFTFITECKDPKACTILL 331
Query: 435 RGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYA 494
RG +K ++ E +R++ DA+ V RN++ ++V GGGA E++ + A++ +A I +EQ+
Sbjct: 332 RGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWP 391
Query: 495 FRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVI 554
++A A ALE IP LA+N G + I TLTE++++ + N GID DMK+ +
Sbjct: 392 YKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIW 451
Query: 555 EALRSKKQQILLSTQLVKMILKIDDIRS 582
+ L K Q + + M+L+IDDI S
Sbjct: 452 DPLAVKAQTYKTAIEAACMLLRIDDIVS 479
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 332 bits (853), Expect = e-107
Identities = 188/569 (33%), Positives = 312/569 (54%), Gaps = 56/569 (9%)
Query: 20 ILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATI 79
+L Q KR G A S+I AAK +A+ ++T+LGP+ + KM++ G + +TNDG I
Sbjct: 2 VLVLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAI 61
Query: 80 LKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGF 139
L+ +DV H AK M++LS++QD+E+GDGTT V++LAG +L AE L++ IHP I +
Sbjct: 62 LREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAY 121
Query: 140 ELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVA 199
+ A A+ LE I S PV+ ++ ++K + +G+K +++ M ++A++AV V
Sbjct: 122 KKALDDALSVLEEI--SIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVK 179
Query: 200 DLEKRDVNFEL-----IKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILT 254
+ + E+ KVE GG +ED+ ++KGV+I+KD +HP+M + + + ++ +L
Sbjct: 180 -RDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLD 238
Query: 255 CPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANH 314
CP E + +++ N+++ ED+ + + E+E M + + A L I + G D A H
Sbjct: 239 CPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQH 298
Query: 315 LLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLG-KAGLGNQFWYNQRSHAG 373
LL+ + A+R V D IA G IV R EEL +G GL
Sbjct: 299 YLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGL------------- 345
Query: 374 HTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIF 433
FE +K+G ++ EC++ KA TI
Sbjct: 346 ------------------FE---VKKIG-------------DEYFTFFTECKDPKACTIL 371
Query: 434 IRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQY 493
+RG +K ++ E +R++ DA+ V RN++ E +++ GGGA E++ ++ +A +A K+ ++Q+
Sbjct: 372 LRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQW 431
Query: 494 AFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNV 553
+RA ADALE IP LA+N G++ I TLTE++++ +E N GID DMK++ +
Sbjct: 432 PYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGI 491
Query: 554 IEALRSKKQQILLSTQLVKMILKIDDIRS 582
E L K Q + + M+L+IDDI S
Sbjct: 492 WEPLAVKLQTYKTAIESACMLLRIDDIVS 520
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 326 bits (838), Expect = e-105
Identities = 190/567 (33%), Positives = 293/567 (51%), Gaps = 63/567 (11%)
Query: 20 ILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSS--DGDVTVTNDGA 77
IL++ ++++ G A S V A I + +KT+LGPKG+DK++ S G VTVTNDGA
Sbjct: 1 ILKDGAQEEK--GETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGA 58
Query: 78 TILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 137
TILK + VD+ AK++V +S+ QDDE+GDGTT V VLA LL +AE L+ + IHP I +
Sbjct: 59 TILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIE 118
Query: 138 GFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVM 196
G+ +A A + L + A + + E L+ A TTL SKI+ + AE+AV+AV+
Sbjct: 119 GYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVL 178
Query: 197 AVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCP 256
+ K N + I++ K+GG L+D+ L +G ++DK Q PK + + K+ I P
Sbjct: 179 RL----KGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTP 233
Query: 257 FEPPRPK---TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEAN 313
+ + K K +D S E+ + E+EK + V+K+ G I
Sbjct: 234 MDTDKIKIFGAKVRVD--STAKVAEIEEAEKEKMKNKVEKILKHGINCFI---------- 281
Query: 314 HLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAG 373
+QL I E+L AG+ HA
Sbjct: 282 ----NRQL---------------------IYNYPEQL----FADAGI------MAIEHAD 306
Query: 374 HTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIF 433
+E +A+VTGG I F+ KLG L+ EI G +D ++ +A TI
Sbjct: 307 FDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIG--EDKLIRFSGVAAGEACTIV 364
Query: 434 IRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQY 493
+RG ++ I++EA+RS+HDALCV+ V + RVV GGG +E+ A AV A K +
Sbjct: 365 LRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSL 424
Query: 494 AFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNV 553
A AFA AL +P +A+N+G E + ++++ A G+D DMK+ +
Sbjct: 425 AIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTA-GLDMRKGTVGDMKELGI 483
Query: 554 IEALRSKKQQILLSTQLVKMILKIDDI 580
E+ + K+Q +L +++ +MIL++DDI
Sbjct: 484 TESFKVKRQVLLSASEAAEMILRVDDI 510
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 311 bits (800), Expect = 5e-99
Identities = 190/570 (33%), Positives = 292/570 (51%), Gaps = 66/570 (11%)
Query: 20 ILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSD-----GDVTVTN 74
+L+ ++++ G A V A +A+ +KT+LGPKG+DK++ G+VTVTN
Sbjct: 10 VLKQGAQEEK--GETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTN 67
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
DGATILK + +D+ AK++V +S++QD+E+GDGTT VVVLAG LL +AE LLD+ IHP
Sbjct: 68 DGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQT 127
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKIINKCHRQMAEIAVN 193
I +G+ +A A K LE IA + + E L+ A TTL SK++ A++AV+
Sbjct: 128 IIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVD 187
Query: 194 AVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAIL 253
AV+ + K N + I++ K GG L D+ L G +++K Q PK L + K+ +
Sbjct: 188 AVLRL----KGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQ-PKRLENCKILVA 242
Query: 254 TCPFEPPRPK---TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDD 310
P + + K K +D S+E E+ E+EK + VDK+ A G + I + +
Sbjct: 243 NTPMDTDKIKIYGAKVKVD--SMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYN 300
Query: 311 EANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRS 370
L + + A+ +E +A G IV F+ T EK+
Sbjct: 301 YPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFD--TPEKV--------------- 343
Query: 371 HAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAV 430
KLG L+ EI G +D ++ C +A
Sbjct: 344 ----------------------------KLGHCDLIEEIMIG--EDKLIRFSGCAKGEAC 373
Query: 431 TIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSI 490
TI +RG + I++EA+RS+HDALCV+ V + RVV GGG +E+ A AV A K+
Sbjct: 374 TIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGK 433
Query: 491 EQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQ 550
+ A AFA AL IP +A+N G E ++++++ K A GID DMK+
Sbjct: 434 KSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTA-GIDMEKGTVGDMKE 492
Query: 551 QNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ E+ + K Q+ +T+ +MIL++DDI
Sbjct: 493 LGITESYKVKLSQLCSATEAAEMILRVDDI 522
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 308 bits (790), Expect = 2e-97
Identities = 189/573 (32%), Positives = 286/573 (49%), Gaps = 74/573 (12%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
+R G D ++ AA IAN +K+SLGP GLDKM+V GDVT+TNDGATILKL++V+H
Sbjct: 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 61
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++V+L+Q QD E+GDGTT VV++A LL++A L+ + IHP I G+ LA + AV
Sbjct: 62 PAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAV 121
Query: 148 KHLETIADSFPVNPDNL--EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKR- 204
K+ I + ++ DNL E LI A T++ SKII A + V+A++AV ++
Sbjct: 122 KY---IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKG 178
Query: 205 -------DVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPF 257
VN ++K GK +++ LV G ++ + MP +++ K+A L
Sbjct: 179 KTKYPIKAVN--ILKAHGK---SAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNL 233
Query: 258 EPPRPKTKHNLDVQ-SVEDYKEL---RKYEQEKFASMVDKVKATGATLAICQWGFDDEAN 313
+ KTK L VQ V D ++L R+ E + + K+ A GA + + G DD
Sbjct: 234 Q----KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCL 289
Query: 314 HLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAG 373
++ AVR V D+ IA TG +V L E
Sbjct: 290 KYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGE-------------------- 329
Query: 374 HTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIF 433
E LG+A V + G D +++I+ + + +I
Sbjct: 330 -------------------ETFDPSYLGEAEEVVQERIG--DDELILIKGTKKRSSASII 368
Query: 434 IRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQY 493
+RG N +++E +RS+HDALCVV+ + N VV GGGA E + +I + A + S EQ
Sbjct: 369 LRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQL 428
Query: 494 AFRAFADALESIPLALAENSGLSPIETLTEVKSR----QVKEVNPAL---GIDCMLNGTN 546
A FA+AL IP LA N+ E + ++++ QVK L G+D +
Sbjct: 429 AIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVR 488
Query: 547 DMKQQNVIEALRSKKQQILLSTQLVKMILKIDD 579
D + V+E SK + + +T+ IL+IDD
Sbjct: 489 DNLEAGVLEPTVSKIKSLKFATEAAITILRIDD 521
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 301 bits (773), Expect = 3e-95
Identities = 175/574 (30%), Positives = 286/574 (49%), Gaps = 59/574 (10%)
Query: 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDG 76
P I+L+ + + G + S+I A + IA+ ++T+LGP+G+DK++V G VT++NDG
Sbjct: 1 PIILLKEGTDTSQ--GKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDG 58
Query: 77 ATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIA 136
ATILKL+D+ H AK +V +++SQD E+GDGTT VVVLAG L++A+ ++ G+HP I
Sbjct: 59 ATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIII 118
Query: 137 DGFELAAQCAVKHLETIADSFP--VNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
G+ A Q A++ ++ IA + + E L K A T L SK+I A++ V+A
Sbjct: 119 RGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDA 178
Query: 195 VMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFS---HPQMPKELRDVKLA 251
V+++ D D++ ++I ++ GG LED+ LV GV K FS Q PK+ ++ K+
Sbjct: 179 VLSLDD----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKIL 234
Query: 252 ILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDE 311
+L E K + V+ E+Y+ + E + ++K+ +GA + + + D
Sbjct: 235 LLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDL 294
Query: 312 ANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSH 371
A + + V D++ +A TGG I +T + LG GL
Sbjct: 295 ATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGL----------- 343
Query: 372 AGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVT 431
FEE ++G R F C +K T
Sbjct: 344 --------------------FEE---RQVGG---ERYNIF----------TGCPKAKTCT 367
Query: 432 IFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIE 491
I +RGG + IEEA+RS+HDA+ +VR + + VV GGGA E+ + + + I+ +
Sbjct: 368 IILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQ 427
Query: 492 QYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQ 551
Q AFA ALE IP L +N+G + L +++ + + G+D G D +
Sbjct: 428 QLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEA 487
Query: 552 NVIEALRSKKQQILLSTQLVKMILKIDD-IRSPN 584
V E K + +T+ +IL +D+ I++P
Sbjct: 488 FVWEPSLVKINALTAATEAACLILSVDETIKNPK 521
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 294 bits (755), Expect = 2e-92
Identities = 181/569 (31%), Positives = 277/569 (48%), Gaps = 64/569 (11%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
+R G D ++ A +AN +KTSLGP GLDKM+V GDVT+TNDGATILKL++V+H
Sbjct: 6 ERTSGQDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 65
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK++V+L+Q QD E+GDGTT VV++A LL++A L+ +HP I G+ LA + AV
Sbjct: 66 PAAKILVELAQLQDREVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEAV 125
Query: 148 KHLETIADSFPVNPDNL--EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRD 205
K+ I ++ V+ D L E LI A T++ SKII + I V+AV+AV +
Sbjct: 126 KY---IKENLSVSVDTLGKEALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENG 182
Query: 206 VN---FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRP 262
+ + + G ++ LVKG ++ + QMPK ++ K+A L +
Sbjct: 183 EIKYPIKAVNILKAHGKSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQ---- 238
Query: 263 KTKHNLDVQ-SVEDYKEL---RKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQ 318
K K L VQ V+D +L R+ E + + K+ GA + + G DD ++
Sbjct: 239 KAKMALGVQIVVDDPAKLEQIRQREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVE 298
Query: 319 KQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIE 378
VR D++ IA TGG +V +L E
Sbjct: 299 AGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGE------------------------- 333
Query: 379 LIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGN 438
E + LG A V + D ++I+ + + +I +RG N
Sbjct: 334 --------------ETFDASYLGFADEVVQERIA--DDECILIKGTKKRSSASIILRGAN 377
Query: 439 KMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAF 498
+++E +RS+HDALCVV+ + N VV GGGA E + +I + A + S EQ A F
Sbjct: 378 DFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVEAALSIYLENFATTLGSREQLAIAEF 437
Query: 499 ADALESIPLALAENSGLSPIETLTEVKSRQVKE-VNPA------LGIDCMLNGTNDMKQQ 551
A+AL IP LA N+ E + ++++ + P G+D D K+
Sbjct: 438 AEALLIIPKTLAVNAAKDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEA 497
Query: 552 NVIEALRSKKQQILLSTQLVKMILKIDDI 580
V+E SK + + +T+ IL+IDD+
Sbjct: 498 GVLEPAVSKVKSLKFATEAAITILRIDDL 526
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 290 bits (744), Expect = 7e-91
Identities = 179/572 (31%), Positives = 282/572 (49%), Gaps = 58/572 (10%)
Query: 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDG 76
++L+ + + G + S+I A IA LKT+LGP+G+DK++V S+G TV+NDG
Sbjct: 3 TIVLLKEGTDTSQ--GKGQLISNINACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDG 60
Query: 77 ATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIA 136
ATILKL+D+ H AK +V +++SQD E+GDGTT VV+LAG LL++A+ +++G+HP I
Sbjct: 61 ATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLII 120
Query: 137 DGFELAAQCAVKHLETIADSFP-VNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAV 195
G+ A A++ ++ IA + + E L K A T L SK+I +++ V+AV
Sbjct: 121 RGYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAV 180
Query: 196 MAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFS---HPQMPKELRDVKLAI 252
++ L++ D++ +LI V+ GG LED++LV GV K FS Q PK+ + K+ +
Sbjct: 181 LS---LDRDDLDLKLIGVKKVQGGALEDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILL 237
Query: 253 LTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEA 312
L E K + V+ VEDY+ + E + K+ +GA + + + D A
Sbjct: 238 LNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLPIGDLA 297
Query: 313 NHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHA 372
Q A I GR V
Sbjct: 298 T------QYFADH----------NIFCAGR-VSA-------------------------- 314
Query: 373 GHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTI 432
D++ + GG I +L ++ LG L E G+ + ++ C ++K TI
Sbjct: 315 --EDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNLF--TGCPHAKTCTI 370
Query: 433 FIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQ 492
+RGG + IEEA+RS+HDA+ +VR + ++V GGGA E+ + + + I +Q
Sbjct: 371 ILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRDYSKTIDGKQQ 430
Query: 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQN 552
AFA ALE IP L EN+G IE L +++S K G+D D +
Sbjct: 431 LIINAFAKALEVIPRQLCENAGFDSIEILNKLRSAHAKG-GKWYGVDINTEDIGDNFENF 489
Query: 553 VIEALRSKKQQILLSTQLVKMILKIDD-IRSP 583
V E K + +T+ IL +D+ I +P
Sbjct: 490 VWEPALVKINALKAATEAACTILSVDETITNP 521
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 282 bits (723), Expect = 7e-88
Identities = 188/565 (33%), Positives = 292/565 (51%), Gaps = 60/565 (10%)
Query: 20 ILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVS-SDGDVTVTNDGAT 78
I ++Q ++R +A S V A + + +K++LGPKG+DK++ S S + VTNDGAT
Sbjct: 2 IFKDQATEER--AENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSASSNTIMVTNDGAT 59
Query: 79 ILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADG 138
ILK + +D+ AK++V +S+ QDDE+GDGTT V VLA LL +AE L+++ IHP I +G
Sbjct: 60 ILKSIGLDNPAAKVLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEG 119
Query: 139 FELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMA 197
+ LA + A+ L A + E LI A TTL SKI+++ A++AV+AV+
Sbjct: 120 YRLATKAALDALTKSAVDNSSDKTKFREDLINIARTTLSSKILSQHKDHFAQLAVDAVLR 179
Query: 198 VADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPF 257
+ K N E I++ +GGKL D+ L +G ++ K Q PK + + K+ I
Sbjct: 180 L----KGSTNLEAIQIIKILGGKLSDSFLDEGFILAKKIGVNQ-PKRIENAKILIANTTM 234
Query: 258 EPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLL 316
+ + K + V S EL K E+EK V+K+ G I
Sbjct: 235 DTDKVKIFGSRVRVDSTAKLAELEKAEREKMKEKVEKILKHGINCFI------------- 281
Query: 317 LQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTD 376
+QL I E+L AG+ HA
Sbjct: 282 -NRQL---------------------IYNYPEQL----FADAGI------MSIEHADFEG 309
Query: 377 IELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRG 436
+E +A+VTGG IV F+ KLG L+ EI G +D +L + +A TI +RG
Sbjct: 310 VERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIG--EDKLLKFSGVKAGEACTIVLRG 367
Query: 437 GNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFR 496
+ I++EA+RS+HDALCV+ V E+R V GGG AE+ + AV EA I + A
Sbjct: 368 ATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSKAVDTEAQNIPGKKALAVE 427
Query: 497 AFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGT-NDMKQQNVIE 555
AFA AL +P LA+N+G E + ++++ N +G+D M GT DM+Q ++E
Sbjct: 428 AFARALRQLPTILADNAGFDSSELVAQLRA-AHYNGNSTMGLD-MNEGTIADMRQLGIVE 485
Query: 556 ALRSKKQQILLSTQLVKMILKIDDI 580
+ + K+ + +++ +++L++D+I
Sbjct: 486 SYKLKRAVVSSASEAAEVLLRVDNI 510
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 266 bits (681), Expect = 4e-82
Identities = 151/550 (27%), Positives = 255/550 (46%), Gaps = 92/550 (16%)
Query: 34 DAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLM 93
+A+ +I A K ++ +TS GP G++KM+++ + VT+D ATIL+ ++V H AKL+
Sbjct: 8 EAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLL 67
Query: 94 VQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETI 153
V SQ Q++EIGDGT VVVLAG LLE+AE LL G+HP I +G+E A + A++ LE +
Sbjct: 68 VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEEL 127
Query: 154 ADSFPVNPDNLEPLIKTAMTTLGSKII-NKCHRQMAEIAVNAVMAVADLEKRDVNFELIK 212
+ N E + K T + SK N+ ++ + A ++V + N + I+
Sbjct: 128 VVYKIEDLRNKEEVSKALKTAIASKQYGNEDF--LSPLVAEACISVLPENIGNFNVDNIR 185
Query: 213 VEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQS 272
V +GG LED+ +V+G+V ++ + K ++ K+A+ +CPF+
Sbjct: 186 VVKILGGSLEDSKVVRGMVFKRE-PEGSV-KRVKKAKVAVFSCPFD-------------- 229
Query: 273 VEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDI 332
G + + D A H + + +
Sbjct: 230 ------------------------IGVNVIVAGGSVGDLALHYCNKYGIMVI-------- 257
Query: 333 ELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRF 392
+I +FE + + G +PR
Sbjct: 258 ---------KINSKFE----------------------------LRRLCRTVGATPLPRL 280
Query: 393 EELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAV-TIFIRGGNKMIIEEAKRSIHD 451
T E++G V G TK ++V + + + TI +RG + I+++ +R+I D
Sbjct: 281 GAPTPEEIGYCDSVYVEEIGDTK--VVVFRQNKEDSKIATIVLRGATQNILDDVERAIDD 338
Query: 452 ALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAE 511
+ V ++L + R V G GA E+ A + +K +EQYA + FA+A E +P LAE
Sbjct: 339 GVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAE 398
Query: 512 NSGLSPIETLTEVKSRQVKE-VNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQL 570
N+GL E L+E+ + K + + I+ GT D K+ + + L +KK I L+T+
Sbjct: 399 NAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEA 458
Query: 571 VKMILKIDDI 580
+L++D I
Sbjct: 459 AVTVLRVDQI 468
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 257 bits (660), Expect = 5e-79
Identities = 167/549 (30%), Positives = 259/549 (47%), Gaps = 85/549 (15%)
Query: 35 AIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMV 94
A+ +I AAK + + LKT+LGPKG KM+VS GD+ +T DG +L M + H A ++
Sbjct: 13 ALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIA 72
Query: 95 QLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
+ + +QDD GDGTT V+L G LL+QAE + +G+HP I +GFELA A+K LE+
Sbjct: 73 RAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFK 132
Query: 155 DSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVE 214
++ D E L+ A T+L +K+ Q+ EI V+AV+A+ K D +L VE
Sbjct: 133 VPVEIDTDR-ELLLSVARTSLRTKLHADLADQLTEIVVDAVLAI---YKPDEPIDLHMVE 188
Query: 215 -GKVGGKLE-DTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQS 272
++ K + DT L++G+V+D HP MPK + + ILTC S
Sbjct: 189 IMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENA--YILTCNV--------------S 232
Query: 273 VEDYKELRKYEQ-EKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPD 331
+E YE+ E + V I Q G D + +L ++ + A+R +
Sbjct: 233 LE-------YEKTEVNSGFFYSV-------VINQKGIDPPSLDMLAKEGILALRRAKRRN 278
Query: 332 IELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPR 391
+E + + GG + ++L+ E LG +
Sbjct: 279 MERLTLACGGVAMNSVDDLSPECLG--------Y-------------------------- 304
Query: 392 FEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHD 451
AGLV E + G ++ IE +N K+ TI I+G N I + K +I D
Sbjct: 305 -----------AGLVYERTLG--EEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRD 351
Query: 452 ALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAE 511
L V+N + + VV G GA EV+ + + + +AFADAL IP LAE
Sbjct: 352 GLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAE 411
Query: 512 NSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLV 571
NSGL ETL ++ + E G+D D + + + + K+Q + +T +
Sbjct: 412 NSGLDVQETLVKL-QDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIA 470
Query: 572 KMILKIDDI 580
+L +D+I
Sbjct: 471 SQLLLVDEI 479
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 258 bits (662), Expect = 1e-78
Identities = 165/551 (29%), Positives = 270/551 (49%), Gaps = 46/551 (8%)
Query: 33 NDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKL 92
+ A+ +I AA+ + + LKT+LGPKG KM+VS GD+ +T DG +L M + H A +
Sbjct: 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASM 74
Query: 93 MVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLET 152
+ + + +QD+ GDGTT V+L G LL+QAE + +G+HP I +GFE+A + ++ L+
Sbjct: 75 IARAATAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDK 134
Query: 153 IADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIK 212
D E L+ A T+L +K+ Q+ EI V+AV+A+ + D++ +++
Sbjct: 135 FKVKTEDEVDR-EFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGE-DIDLFMVE 192
Query: 213 VEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDV-- 270
+ DT L++G+V+D HP MP+ +++ ILTC KT+ N
Sbjct: 193 IMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNA--YILTCNVSLEYEKTEVNSGFFY 250
Query: 271 QSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG-G 329
S E ++L E+ KF D+VK + L+K++ G
Sbjct: 251 SSAEQREKLVAAER-KFVD--DRVKKI-----------------IELKKKV-----CGKS 285
Query: 330 PDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIV 389
PD + I G P + L E + L A ++E + + GG +
Sbjct: 286 PDKGFVVINQKGIDPPSLDLLAKEGI--LAL---------RRAKRRNMERLTLACGGEAL 334
Query: 390 PRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSI 449
E+LT E LG AGLV E + G ++ IEE +N K+ TI I+G N I + K ++
Sbjct: 335 NSVEDLTPECLGWAGLVYETTIG--EEKYTFIEEVKNPKSCTILIKGPNDHTIAQIKDAV 392
Query: 450 HDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLAL 509
D L V+N + + VV G GA E++ + + + AFA+AL IP L
Sbjct: 393 RDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKENKKSVKGKAKLGVEAFANALLVIPKTL 452
Query: 510 AENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQ 569
AENSG +TL +++ + +G+D D + + + + R KKQ I +T
Sbjct: 453 AENSGFDAQDTLVKLEDEHDEGGEV-VGVDLNTGEPIDPEIKGIWDNYRVKKQLIQSATV 511
Query: 570 LVKMILKIDDI 580
+ +L +D++
Sbjct: 512 IASQLLLVDEV 522
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 247 bits (632), Expect = 2e-74
Identities = 155/550 (28%), Positives = 274/550 (49%), Gaps = 54/550 (9%)
Query: 34 DAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLM 93
+A+ +I A K ++ +TSLGP G++KM+++ + VTND ATIL+ ++V H AKL+
Sbjct: 18 EAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLL 77
Query: 94 VQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETI 153
V S+ Q++EIGDGT V+VLAG LL +AE L+ G+HP I G+E+A + A++ LE +
Sbjct: 78 VMASEMQENEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEEL 137
Query: 154 ADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKV 213
+ + + LIK ++ SK ++++ A V ++ N + I+V
Sbjct: 138 VVWEIEDLRDKKELIKALKASISSKQYGN-EDFLSQLVAKACSTVLPKNPQNFNVDNIRV 196
Query: 214 EGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSV 273
+GG L ++ ++KG+V +++ K ++ K+A+ +CP + +TK + + +
Sbjct: 197 VKIMGGSLSNSEVIKGMVFNREAE--GSVKRVKKAKVAVFSCPLDTATTETKGTVLIHNA 254
Query: 274 EDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIE 333
E+ K E+ + +M+ + +G + + D A H L + + +
Sbjct: 255 EELLNYSKGEENQIEAMIKAIADSGVNVIVTGGSVGDMALHYLNRYGIMVL--------- 305
Query: 334 LIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFE 393
+I +FE + + G +PR
Sbjct: 306 --------KIPSKFE----------------------------LRRLCKTVGATPLPRLG 329
Query: 394 ELTSEKLGKAGLVREISFGTTKDHMLVIE-ECENSKAVTIFIRGGNKMIIEEAKRSIHDA 452
T E+LG V G K + V + E +S+ TI +RG K ++++ +R+I D
Sbjct: 330 APTPEELGYVDSVYVSEIGGDK--VTVFKQENGDSRISTIILRGSTKNLLDDIERAIDDG 387
Query: 453 LCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAEN 512
+ VV+ LV + R + G GA E+ A + A+K ++QYA + FA+A E IP LAEN
Sbjct: 388 VNVVKALVKDGRFLPGAGATEIELASRLTKYAEKTPGLDQYAIKKFAEAFEIIPRTLAEN 447
Query: 513 SGLSPIETLTEVKSRQVKEVNPALGID--CMLNGTNDMKQQNVIEALRSKKQQILLSTQL 570
+GL+P E + ++ + K+ N + GID +G D + + + L +KK I L+T+
Sbjct: 448 AGLNPNEVIPKLYAAH-KKGNTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEA 506
Query: 571 VKMILKIDDI 580
+L++D I
Sbjct: 507 AVTVLRVDQI 516
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 210 bits (537), Expect = 2e-64
Identities = 91/298 (30%), Positives = 124/298 (41%), Gaps = 90/298 (30%)
Query: 165 EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDT 224
E L++ A T+L SK+ + + ++ V+AV+ V + R + +IKVE GG LED+
Sbjct: 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGP-DNRMDDLGVIKVEKIPGGSLEDS 59
Query: 225 MLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQ 284
LV GVV DK ++ P MPK L + K+ +L CP E
Sbjct: 60 ELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------------------------- 94
Query: 285 EKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIV 344
+ I + G DD A H L + + AVR V
Sbjct: 95 ----------------VVIAEKGIDDLALHYLAKAGIMAVRRVKK--------------- 123
Query: 345 PRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAG 404
D+E IA TG IV E+LT E LG A
Sbjct: 124 ------------------------------EDLERIARATGATIVSSLEDLTPEDLGTAE 153
Query: 405 LVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTE 462
LV E G K + IE C+ KA TI +RG ++ ++E KRS+HDALC VR V E
Sbjct: 154 LVEETKIGEEK--LTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 70.2 bits (173), Expect = 1e-12
Identities = 40/132 (30%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 28 KRII-GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILK---LM 83
K I G +A K+ + +A+ +K +LGPKG + ++ S G +T DG T+ K L
Sbjct: 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60
Query: 84 D-VDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELA 142
D ++ A+L+ +++ +D GDGTT VLA A++++ + G +P+ + G E A
Sbjct: 61 DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120
Query: 143 AQCAVKHLETIA 154
+ V+ L+ ++
Sbjct: 121 VEAVVEELKKLS 132
Score = 44.0 bits (105), Expect = 2e-04
Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 52/215 (24%)
Query: 380 IAIVTGGRIVP-----RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAV---- 430
IAI+TGG ++ + E++T E LG+A V TKD +I + A+
Sbjct: 289 IAILTGGTVISEELGLKLEDVTLEDLGRAKKVV-----VTKDDTTIIGGAGDKAAIKARI 343
Query: 431 -------------------------------TIFIRGGNKMIIEEAKRSIHDALCVVRNL 459
I + G ++ ++E K + DAL R
Sbjct: 344 AQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAA 403
Query: 460 VTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIE 519
V E +V GGG A + + A+ E+ ALE+ +AEN+G+
Sbjct: 404 VEEG-IVPGGGVALLRASPALDKLKALNGD-EKLGIEIVRRALEAPLRQIAENAGVDG-- 459
Query: 520 TLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVI 554
V +V E G D DM + +I
Sbjct: 460 ---SVVVEKVLESPDGFGYDAATGEYVDMIEAGII 491
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 66.1 bits (162), Expect = 2e-11
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 29/220 (13%)
Query: 28 KRII-GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILK---LM 83
K I G++A +S + + +A+ + +LGPKG + ++ G +T DG T+ K
Sbjct: 15 KEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFS 74
Query: 84 DVDHEI-AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELA 142
D + A+L+ Q++ +D+ GDGTT +LA A+ + + G++P+ + G +LA
Sbjct: 75 DRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLA 134
Query: 143 AQCAVKHLETIADSFPVNPDNLEPLIKTAM-TTLGSKIINKCHRQ-MAEIAVNAVMAVAD 200
+ ++ L+ S PV ++ A + G I M ++ + + V D
Sbjct: 135 VKVVLESLKEQ--SRPVKTKED--ILNVATISANGDVEIGSLIADAMDKVGKDGTITVED 190
Query: 201 LEKRDVNFELIKVEGKVGGKLEDT-MLVKGVVIDKDFSHP 239
G LED +V+G+ D+ + P
Sbjct: 191 -----------------GKTLEDELEVVEGMSFDRGYISP 213
Score = 29.5 bits (67), Expect = 7.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 431 TIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAA 472
I + G +++ + E K I DAL R V E +V GGG A
Sbjct: 390 VIKVGGASEVEVNEKKDRIEDALNATRAAV-EEGIVPGGGVA 430
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 65.9 bits (161), Expect = 3e-11
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 28 KRIIGNDAIKSHIVAAKNI-ANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD 86
K + + + ++ NI A+ +K +LGPKG + ++ S G T+TNDG TI K ++++
Sbjct: 4 KEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELE 63
Query: 87 HEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELA 142
+ A+++ +++ +D GDGTT VLA A++ + + G +P+ + G + A
Sbjct: 64 DKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRA 123
Query: 143 AQCAVKHLETIA 154
V+ L+ A
Sbjct: 124 VAAVVEELKANA 135
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 64.4 bits (157), Expect = 9e-11
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 28 KRIIGNDAIKSHIVAAKNI-ANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD 86
K I + + ++ NI AN +K +LGPKG + ++ S G +T DG T+ K ++++
Sbjct: 4 KEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELE 63
Query: 87 HEIAKLMVQL----SQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELA 142
+ + Q+ + +D GDGTT VLA A++ + L+ G++P+ + G +LA
Sbjct: 64 DKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLA 123
Query: 143 AQCAVKHLETIA 154
V L+ IA
Sbjct: 124 VAAVVDELKKIA 135
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 63.4 bits (154), Expect = 2e-10
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 35 AIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----A 90
AIK +A+ + +LGPKG + ++ S G + NDG T+ K ++++ + A
Sbjct: 67 AIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGA 126
Query: 91 KLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHL 150
KL+ Q + +D GDGTT VVLA L+ + ++ G +P++I G E A+ VK L
Sbjct: 127 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKEL 186
Query: 151 ETI---------ADSFPV---NPDNLEPLIKTAMTTLGSK 178
+ + AD V N + +I AM+ +G K
Sbjct: 187 KKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRK 226
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 62.5 bits (153), Expect = 3e-10
Identities = 86/348 (24%), Positives = 150/348 (43%), Gaps = 85/348 (24%)
Query: 47 ANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDD 102
A+ +K +LGPKG + ++ S G T+T DG +I K ++++ A+L+ +++ +D
Sbjct: 23 ADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTND 82
Query: 103 EIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPD 162
GDGTT VLA AL+++ + G +P+ + G + A + V+ L+ +A PV+
Sbjct: 83 VAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALAR--PVS-- 138
Query: 163 NLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL-----EKRDVNFE-LIKVEGK 216
GS+ I Q+A I+ N + +L EK V + +I VE
Sbjct: 139 -------------GSEEI----AQVATISANGDEEIGELIAEAMEK--VGKDGVITVEE- 178
Query: 217 VGGKLEDTM-LVKGVVIDKDFSHP-------QMPKELRDVKLAILTCPFEPPRPKTKHNL 268
LE + + +G+ D+ + P +M L D + + +
Sbjct: 179 -SKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILL-------------TDK 224
Query: 269 DVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLL----LQKQLPAV 324
+ S++D +++KV +G L I + EA L L+ L
Sbjct: 225 KISSLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVA 273
Query: 325 RWVGGPD--------IELIAIVTGGRIVPR-----FEELTSEKLGKAG 359
V P +E IAI+TGG ++ EE+T + LG+A
Sbjct: 274 A-VKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAK 320
Score = 41.7 bits (99), Expect = 0.001
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 54/220 (24%)
Query: 380 IAIVTGGRIVPR-----FEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAV---T 431
IAI+TGG ++ EE+T + LG+A V TKD+ +++ + +A+
Sbjct: 291 IAILTGGTVISEDLGLKLEEVTLDDLGRAKRVT-----ITKDNTTIVDGAGDKEAIEARV 345
Query: 432 IFIR-----------------------GGNKMI---------IEEAKRSIHDALCVVRNL 459
IR GG +I ++E K + DAL R
Sbjct: 346 AQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAA 405
Query: 460 VTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLA-LAENSGLSPI 518
V E +V GGG A + A A+ A ++ + ALE+ PL +AEN+GL
Sbjct: 406 VEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRRALEA-PLRQIAENAGLDG- 461
Query: 519 ETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALR 558
V +V E+ G + D+ +I+ ++
Sbjct: 462 ----SVVVAKVLELEDGFGFNAATGEYGDLIAAGIIDPVK 497
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 61.5 bits (150), Expect = 6e-10
Identities = 39/132 (29%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 28 KRII-GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD 86
K+I +A K+ + +A+ +K +LGPKG + ++ S G T+T DG T+ K ++++
Sbjct: 2 KQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELE 61
Query: 87 HEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELA 142
+ A+L+ +++ +D GDGTT VLA A++++ + G +PI + G E A
Sbjct: 62 DKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKA 121
Query: 143 AQCAVKHLETIA 154
+ V+ L+ ++
Sbjct: 122 VEAVVEELKKLS 133
Score = 37.3 bits (87), Expect = 0.023
Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 52/219 (23%)
Query: 377 IELIAIVTGGRIVP-----RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVT 431
+E IAI+TGG+++ + EE+T + LGKA V KD+ ++E + A+
Sbjct: 287 LEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVT-----VDKDNTTIVEGAGDKAAIK 341
Query: 432 IFIR--------------------------GGNKMI---------IEEAKRSIHDALCVV 456
+ GG +I ++E K I DAL
Sbjct: 342 ARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRIEDALNAT 401
Query: 457 RNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLS 516
R V E +V GGG A + A A+ E ALE+ +AEN+GL
Sbjct: 402 RAAVEEG-IVPGGGVALLRAAAALEG-LKGDGEDEAIGIDIVKRALEAPLRQIAENAGLD 459
Query: 517 PIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIE 555
V + +VKE+ G + D+ + +I+
Sbjct: 460 G-----AVVAEKVKELKGNFGFNAATGEYEDLVEAGIID 493
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 59.8 bits (146), Expect = 2e-09
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 25/142 (17%)
Query: 28 KRII-GNDAIKSHIVAAKNIANTLKTSLGPKG----LDKMMVSSDGDVTVTNDGATILKL 82
K I G DA + + +A+ +K +LGPKG L+K S G T+T DG T+ K
Sbjct: 3 KDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEK----SFGAPTITKDGVTVAK- 57
Query: 83 MDVDHEI----------AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHP 132
EI A+L+ +++ +D GDGTT VLA A++ + + G +P
Sbjct: 58 -----EIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANP 112
Query: 133 IRIADGFELAAQCAVKHLETIA 154
+ + G + A + AV+ L+ I+
Sbjct: 113 MDLKRGIDKAVEAAVEELKKIS 134
Score = 29.7 bits (68), Expect = 4.8
Identities = 50/198 (25%), Positives = 76/198 (38%), Gaps = 57/198 (28%)
Query: 380 IAIVTGGRIVP-----RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFI 434
IAI+TGG ++ + E+ T E LG+A V TKD+ +++ + +A I
Sbjct: 291 IAILTGGTVISEELGLKLEDATLEDLGQAKKVV-----VTKDNTTIVDGAGDKEA----I 341
Query: 435 RGGNKMI---IEE--------------AKRS----------------------IHDALCV 455
+ I IEE AK + + DAL
Sbjct: 342 KARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHA 401
Query: 456 VRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPL-ALAENSG 514
R V E +V GGG A + A ++ E ALE+ PL +AEN+G
Sbjct: 402 TRAAVEEG-IVPGGGVALLR-AAPALEALKGLNGDEATGINIVLRALEA-PLRQIAENAG 458
Query: 515 LSPIETLTEVKSRQVKEV 532
L + +VK+ + K
Sbjct: 459 LEGSVVVEKVKNGKGKGY 476
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 58.1 bits (140), Expect = 8e-09
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 32 GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI-- 89
G DA + +AN +K +LGPKG + ++ S G +T DG T+ K ++++ +
Sbjct: 9 GVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFEN 68
Query: 90 --AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
A+++ +++ D GDGTT VLA A++ + + G++P+ + G +LA + V
Sbjct: 69 MGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVV 128
Query: 148 KHL 150
L
Sbjct: 129 ADL 131
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 57.5 bits (139), Expect = 1e-08
Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 46 IANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQD 101
+AN +K +LGPKG + ++ S G +T DG T+ K ++++ + A+++ +++ +
Sbjct: 23 LANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTN 82
Query: 102 DEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
D GDGTT VLA A++ + + G++P+ + G ++A VK +E A
Sbjct: 83 DLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRA 135
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 54.9 bits (133), Expect = 3e-08
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 177 SKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDF 236
I+ + A V A D++ R + +K++ GG D+ +V GVV K+
Sbjct: 20 LDILLPLVWKAASNVKPDVRAGDDMDIR----QYVKIKKIPGGSPSDSEVVDGVVFTKNV 75
Query: 237 SHPQMPKELRDVKLAILTCPFEPPRPKTKH---NLDVQSVEDYKELRKYEQEKFASMVDK 293
+H +MP ++++ ++ +L P E R + K + + ++Y L+ V +
Sbjct: 76 AHKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEY--LKNL--------VSR 125
Query: 294 VKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEEL-TS 352
+ A + + + A LLL+ + V V +E I+ TG I+ ++L TS
Sbjct: 126 IVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTS 185
Query: 353 EKLG 356
KLG
Sbjct: 186 PKLG 189
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 48.6 bits (116), Expect = 7e-06
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 53 SLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGT 108
+LGPKG + ++ G + NDG TI K ++++ I L+ Q + +D GDGT
Sbjct: 29 TLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGT 88
Query: 109 TGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQ 144
T VLA A+++Q + G +PI + G E A Q
Sbjct: 89 TTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQ 124
>gnl|CDD|223580 COG0506, PutA, Proline dehydrogenase [Amino acid transport and
metabolism].
Length = 391
Score = 31.6 bits (72), Expect = 1.3
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 104 IGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL---------AAQCAVKHLETIA 154
G GV AL+ AE LL G + R E A + A +
Sbjct: 38 SVAGEEGV-----ALICLAEALLRIGDNATRDVLIEEFISGGDWASEAGESAKLLVNAAT 92
Query: 155 DSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVA 199
+ + P + ++ LG K+ + A++ +
Sbjct: 93 SGLVLTGKLVNPHLSLKLSQLGQKLG----EPVIRKALDNARRIL 133
>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase.
Length = 427
Score = 31.4 bits (71), Expect = 1.4
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 284 QEKFASMVDKVKATGATL--AICQWGFDDEA 312
E++ M D + ATG ++ ++C+WG DD A
Sbjct: 193 IERYPPMRDALNATGRSIFYSLCEWGVDDPA 223
>gnl|CDD|226533 COG4047, COG4047, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 243
Score = 30.6 bits (69), Expect = 2.2
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 437 GNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKIS-------S 489
N+ +IE+ R I A + L EN VY + + A+A A AD+ S
Sbjct: 91 FNRRLIEQKLRRIRRAESFLETLTEENIEVYYEDMSLLLEALARALGADRESKTVVFSVK 150
Query: 490 IEQYAFRAFADALESIPL 507
+ YA R P
Sbjct: 151 MFGYAARIVLGRFRPYPF 168
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 30.5 bits (69), Expect = 3.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 326 WVGGPDIELIA--IVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQ 368
W+GG +A +V GGR+ P L S + + G++FW+
Sbjct: 327 WIGG-----VAEPLVPGGRVGPLLACLISRQFRRIRDGDRFWWEN 366
>gnl|CDD|225889 COG3353, FlaF, Putative archaeal flagellar protein F [Cell motility
and secretion].
Length = 137
Score = 29.0 bits (65), Expect = 3.2
Identities = 16/86 (18%), Positives = 29/86 (33%)
Query: 44 KNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDE 103
++ L T + SS +V +TN+G+T+ D V + S+
Sbjct: 43 SHVYALLNTKVEIVSYYYNSSSSTVNVNITNNGSTVFNPSKFDVLFNGTYVSFNVSKKYL 102
Query: 104 IGDGTTGVVVLAGALLEQAEHLLDKG 129
+ + V G E + G
Sbjct: 103 FPLESYTITVPGGTGPYSLEIVTPDG 128
>gnl|CDD|183464 PRK12352, PRK12352, putative carbamate kinase; Reviewed.
Length = 316
Score = 29.8 bits (67), Expect = 4.6
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 223 DTMLVKGV--VIDKDFSHPQMPKELRDVKLAILT------CPFEPPRPKTKHNLDVQSVE 274
D + V VIDKD S + +E+ L I T F P + LD +
Sbjct: 203 DAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKP---QQQALDRVDIA 259
Query: 275 DYKELRKYEQE-KFA--SMVDKVKAT 297
+ +Y QE F SM+ K+ A+
Sbjct: 260 ---TMTRYMQEGHFPPGSMLPKIIAS 282
>gnl|CDD|239768 cd04235, AAK_CK, AAK_CK: Carbamate kinase (CK) catalyzes both the
ATP-phosphorylation of carbamate and carbamoyl phosphate
(CP) utilization with the production of ATP from ADP and
CP. Both CK (this CD) and nonhomologous CP synthetase
synthesize carbamoyl phosphate, an essential precursor
of arginine and pyrimidine bases, in the presence of
ATP, bicarbonate, and ammonia. CK is a homodimer of 33
kDa subunits and is a member of the Amino Acid Kinase
Superfamily (AAK).
Length = 308
Score = 29.8 bits (68), Expect = 4.7
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 33/88 (37%)
Query: 228 KGV--VIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSV-EDYK------- 277
KGV VIDKD + + +E+ L ILT DV +V ++
Sbjct: 202 KGVEAVIDKDLASALLAEEINADLLVILT--------------DVDNVYINFGKPNQKAL 247
Query: 278 ------ELRKYEQE-KFA--SMVDKVKA 296
EL KY +E +FA SM KV+A
Sbjct: 248 EQVTVEELEKYIEEGQFAPGSMGPKVEA 275
>gnl|CDD|239320 cd03022, DsbA_HCCA_Iso, DsbA family,
2-hydroxychromene-2-carboxylate (HCCA) isomerase
subfamily; HCCA isomerase is a glutathione (GSH)
dependent enzyme involved in the naphthalene catabolic
pathway. It converts HCCA, a hemiketal formed
spontaneously after ring cleavage of
1,2-dihydroxynapthalene by a dioxygenase, into
cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the
fourth reaction in a six-step pathway that converts
napthalene into salicylate. HCCA isomerase is unique to
bacteria that degrade polycyclic aromatic compounds. It
is closely related to the eukaryotic protein, GSH
transferase kappa (GSTK).
Length = 192
Score = 29.1 bits (66), Expect = 4.7
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 476 CAIAVAAEADKISSIEQYAFRA-FADAL----ESIPLALAENSGLSPIETLTEVKSRQVK 530
A+A AE D + + FRA + + L ++ A+A +GL E L VK
Sbjct: 91 AALAAQAEGDAAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPAVK 150
Query: 531 E 531
Sbjct: 151 A 151
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 29.1 bits (66), Expect = 7.1
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 306 WGFDDEANHLLLQKQLPAVR---------WVGGPDIELIAIVTGGRIVPRFEELTSEKLG 356
F DE N + L VR +GG ++ T +I R SE LG
Sbjct: 7 TDFADEENRAAFRAALARVREELGREYPLVIGGKEVR-----TEEKIESRNPADPSEVLG 61
Query: 357 KAGLGNQ 363
+
Sbjct: 62 TVQKATK 68
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional.
Length = 559
Score = 29.2 bits (66), Expect = 7.5
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 117 ALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETI-------ADSFPVNPDNLEPLIK 169
A L E L + ++P + D E++A AV +E P N D L L+K
Sbjct: 494 ATLVSEEDLREGKLYP-PLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVK 552
Query: 170 TAM 172
M
Sbjct: 553 DRM 555
>gnl|CDD|128345 smart00030, CLb, CLUSTERIN Beta chain.
Length = 206
Score = 28.6 bits (64), Expect = 8.7
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 518 IETLTEVKSRQV-KEVNPALG----IDCMLNGTNDMKQQ--NVIEALRSKKQQILLSTQL 570
++ ++ S+ + KE+ AL I ++ TN ++ + +E + KK++ L T+
Sbjct: 9 LQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRE 68
Query: 571 VKMILKIDDIRSPNDGICDEEMAAAW 596
+ LK + G+C+E M A W
Sbjct: 69 SEEKLK------ESQGVCNETMMALW 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.378
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,954,340
Number of extensions: 3238694
Number of successful extensions: 3228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3099
Number of HSP's successfully gapped: 99
Length of query: 622
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 519
Effective length of database: 6,369,140
Effective search space: 3305583660
Effective search space used: 3305583660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)