RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14623
(622 letters)
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 752 bits (1944), Expect = 0.0
Identities = 319/588 (54%), Positives = 426/588 (72%), Gaps = 53/588 (9%)
Query: 1 MSGGMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLD 60
M + DE GRPFII+++Q +KR G +A KSHI+AA+++A+ +KTSLGP+GLD
Sbjct: 12 MPDLSNAIVAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLD 71
Query: 61 KMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLE 120
K+++S DG++T+TNDGATIL M++D+EIAKL+VQLS+SQDDEIGDGTTGVVVLA ALL+
Sbjct: 72 KILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLD 131
Query: 121 QAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL--EPLIKTAMTTLGSK 178
QA L+ KGIHPI+IA+GF+ AA+ A+ LE D + D L + L++ A T+LGSK
Sbjct: 132 QALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSK 191
Query: 179 IINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 238
I++K H + AE+AV AV+ V D +++DV+F+LIK++G+VGG + D+ L+ GV++DKDFSH
Sbjct: 192 IVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSH 251
Query: 239 PQMPKELR------DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVD 292
PQMPK + VKLAILTCPFEPP+PKTKH LD+ SVE+Y++L+ YEQ+KF M+D
Sbjct: 252 PQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMID 311
Query: 293 KVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTS 352
VK GA + ICQWGFDDEANHLLLQ LPAVRWVGG
Sbjct: 312 DVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGG----------------------- 348
Query: 353 EKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFG 412
++E IAI T GRIVPRF++L+ +KLG + E FG
Sbjct: 349 ----------------------QELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFG 386
Query: 413 TTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAA 472
TTKD ML+IE+ + +K VT F+RG NKMI++EA+R++HD+LCVVRNLV ++RVVYGGGAA
Sbjct: 387 TTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAA 446
Query: 473 EVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEV 532
EV+ ++AV+ EADK I+QYAFR FA AL++IP+ LAENSGL PI TL+ +KS+Q+KE
Sbjct: 447 EVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEK 506
Query: 533 NPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+G+DC+ G+NDMK+ V++ KKQQILL+TQL +MILKID++
Sbjct: 507 ISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNV 554
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 732 bits (1892), Expect = 0.0
Identities = 390/558 (69%), Positives = 461/558 (82%), Gaps = 45/558 (8%)
Query: 26 EQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDV 85
+ R++G +A+KSHI+AAK +ANT+KTSLGP GLDKMMV DGDVTVTNDGATIL +MDV
Sbjct: 2 RKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDV 61
Query: 86 DHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQC 145
DH+IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLE+AE LLD+GIHPIRIADG+E AA+
Sbjct: 62 DHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARI 121
Query: 146 AVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRD 205
A++HL+ I+DS V+ N EPLI+TA TTLGSK++N CHRQMAEIAVNAV+ VAD+++RD
Sbjct: 122 AIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRD 181
Query: 206 VNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTK 265
V+FELIKVEGKVGG+LEDT L+KGV++DKDFSHPQMPK++ D K+AILTCPFEPP+PKTK
Sbjct: 182 VDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTK 241
Query: 266 HNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVR 325
H LDV SVED+K L+KYE+EKF M+ ++K TGA LA+CQWGFDDEANHLLLQ LPAVR
Sbjct: 242 HKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVR 301
Query: 326 WVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTG 385
WVGG +IELIAI TG
Sbjct: 302 WVGG---------------------------------------------PEIELIAIATG 316
Query: 386 GRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEA 445
GRIVPRF ELT+EKLG AGLV+EISFGTTKD MLVIE+C+NS+AVTIFIRGGNKMIIEEA
Sbjct: 317 GRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEA 376
Query: 446 KRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESI 505
KRS+HDALCV+RNL+ +NRVVYGGGAAE+SCA+AV+ EADK ++EQYA RAFADALE I
Sbjct: 377 KRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVI 436
Query: 506 PLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQIL 565
P+ALAENSG++PI+T+TEV++RQVKEVNPALGIDC+ GTNDMK Q+VIE L KKQQI
Sbjct: 437 PMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQIS 496
Query: 566 LSTQLVKMILKIDDIRSP 583
L+TQ+V+MILKIDDIR P
Sbjct: 497 LATQMVRMILKIDDIRKP 514
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 721 bits (1863), Expect = 0.0
Identities = 197/587 (33%), Positives = 315/587 (53%), Gaps = 55/587 (9%)
Query: 1 MSGGMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLD 60
M+ + G P IIL+ + R G +A++++I A K + LK++ GP+G+D
Sbjct: 1 MASTAT--VATTPEGIPVIILK--EGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMD 56
Query: 61 KMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLE 120
KM+V S GD+T+TNDGATIL MD+ H AKL+VQ+++ QD+E DGT V+ +G L++
Sbjct: 57 KMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVK 116
Query: 121 QAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKII 180
+AE LL K +HP I G++ A + A++ ++ +A V+ ++ + L K AMT+L SK +
Sbjct: 117 KAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQ--TVSINDTDLLRKIAMTSLSSKAV 174
Query: 181 NKCHRQMAEIAVNAVMAVADL--EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 238
+A+I V AV VA+L +K V+ + I++ K GG + DT LV G+V+DK+ H
Sbjct: 175 AGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVH 234
Query: 239 PQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 298
P MPK L + K+A++ E +P+ + + ++ E+ VDK+ ATG
Sbjct: 235 PGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATG 294
Query: 299 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKA 358
A + ICQ G D+ A L +K + AVR
Sbjct: 295 ANVIICQKGIDEVAQSYLAKKGVLAVRRAKK----------------------------- 325
Query: 359 GLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHM 418
+D+E +A TGGR+V +E++ + LG A L+ E G +D M
Sbjct: 326 ----------------SDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVG--EDKM 367
Query: 419 LVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAI 478
+ +E +N K+++I IRGG + +++E +R++ DAL V +++ + R + GGGA E+ A
Sbjct: 368 VFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAK 427
Query: 479 AVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGI 538
+ A ++ EQ A A+A+ALES+ L EN+G PI+ L +++S E N GI
Sbjct: 428 KLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGI 487
Query: 539 DCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPND 585
D DM Q+ VIE K I +T+ ++L+IDD+ S
Sbjct: 488 DLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGK 534
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 713 bits (1844), Expect = 0.0
Identities = 205/572 (35%), Positives = 318/572 (55%), Gaps = 56/572 (9%)
Query: 11 MDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDV 70
M P ++L+ + +R G +A +++I AAK IA+ ++T+LGPKG+DKM+V S GD+
Sbjct: 1 MMTGQVPILVLK--EGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDI 58
Query: 71 TVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGI 130
++NDGATILK MDV+H AK++V++S++QD +GDGTT VVL+G LL+QAE LLD+G+
Sbjct: 59 IISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGV 118
Query: 131 HPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEI 190
HP I++G+ LA A K ++ IA + L K A+T L K + +A++
Sbjct: 119 HPTVISNGYRLAVNEARKIIDEIA----EKSTDDATLRKIALTALSGKNTGLSNDFLADL 174
Query: 191 AVNAVMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDV 248
V AV AVA++ K V+ IKV+ K GG + DT + G+VIDK+ H +MP +++
Sbjct: 175 VVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNA 234
Query: 249 KLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGF 308
K+A++ E + + + + + ++ E F MV+K+K +GA + +CQ G
Sbjct: 235 KIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI 294
Query: 309 DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQ 368
DD A H L ++ + AVR V
Sbjct: 295 DDVAQHYLAKEGIYAVRRVKK--------------------------------------- 315
Query: 369 RSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSK 428
+D+E +A TG +IV ++LT LG+A V E G D M + C+N K
Sbjct: 316 ------SDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG--DDRMTFVMGCKNPK 367
Query: 429 AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKIS 488
AV+I IRGG ++ E +R+++DA+ VV + + ++GGGA E A+ +A A+ +
Sbjct: 368 AVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVG 427
Query: 489 SIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDM 548
EQ A AFA ALE IP LAEN+G+ PI TL ++K+ K ++G+D NG DM
Sbjct: 428 GREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKG-RISVGVDLDNNGVGDM 486
Query: 549 KQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
K + V++ LR K + + ++ MIL+IDD+
Sbjct: 487 KAKGVVDPLRVKTHALESAVEVATMILRIDDV 518
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 713 bits (1842), Expect = 0.0
Identities = 208/573 (36%), Positives = 325/573 (56%), Gaps = 56/573 (9%)
Query: 10 MMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGD 69
M+ G+P IL+ + KR G DA+K +I AA I+N++++SLGP+G+DKM+V S GD
Sbjct: 1 MIA--GQPIFILK--EGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGD 56
Query: 70 VTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKG 129
+ +TNDG TILK MDV+H AK+MV++S++QD +GDGTT V++AG LL+QA+ L+++
Sbjct: 57 IVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQN 116
Query: 130 IHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAE 189
+HP I++G+ +A++ A + ++ I+ + D L+K A T+L SK + ++AE
Sbjct: 117 VHPTVISEGYRMASEEAKRVIDEIST--KIGADEKALLLKMAQTSLNSKSASVAKDKLAE 174
Query: 190 IAVNAVMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRD 247
I+ AV +VA+L K V+F+ I+V K GG ++DT L+ G+++DK+ HP MP ++D
Sbjct: 175 ISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKD 234
Query: 248 VKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWG 307
K+A+L P E +P+ NL ++ ++ E+ MVDK+K+ GA + I Q G
Sbjct: 235 AKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG 294
Query: 308 FDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYN 367
DD A H L + + AVR V
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKK-------------------------------------- 316
Query: 368 QRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENS 427
+D++ +A TG IV +E++S LG A V ++ G +D+M + C+N
Sbjct: 317 -------SDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG--EDYMTFVTGCKNP 367
Query: 428 KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKI 487
KAV+I +RG + +++E +RSI D+L VV + + + GGGA A + + A KI
Sbjct: 368 KAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKI 427
Query: 488 SSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTND 547
+Q A FADA+E IP ALAEN+GL PI+ L ++++ K N GI+ D
Sbjct: 428 GGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKG-NKTYGINVFTGEIED 486
Query: 548 MKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
M + VIE +R KQ I +T+ MIL+IDD+
Sbjct: 487 MVKNGVIEPIRVGKQAIESATEAAIMILRIDDV 519
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 713 bits (1842), Expect = 0.0
Identities = 155/575 (26%), Positives = 263/575 (45%), Gaps = 56/575 (9%)
Query: 10 MMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGD 69
M P I++ + G I S+I A + LK +LGP G D ++V+S+
Sbjct: 1 MNFGSQTPTIVVLKE-GTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQK 59
Query: 70 VTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKG 129
T++NDGATILKL+DV H AK +V +S++QD E+GDGTT V +LAG L+++A+ L++G
Sbjct: 60 TTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEG 119
Query: 130 IHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKIINKCHRQMA 188
I I G+ A AV+ + +A + E L + A T + SK+I+
Sbjct: 120 ISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFV 179
Query: 189 EIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP---QMPKEL 245
++ V+AV+++ ++ D++ +LI ++ GG +E+++ + GV K FS+ Q PK+
Sbjct: 180 KMCVDAVLSL---DRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKF 236
Query: 246 RDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQ 305
+ K+ L E K + V+ VEDY+ + E + + +V+ TGA + + +
Sbjct: 237 NNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSK 296
Query: 306 WGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFW 365
D A + + V
Sbjct: 297 LPIGDLATQFFADRNIFCAGRVSA------------------------------------ 320
Query: 366 YNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECE 425
D+ + GG I ++ E LG L E+ G+ + + + C
Sbjct: 321 ---------DDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGS--ERYNLFQGCP 369
Query: 426 NSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEAD 485
+K T+ +RGG + +I E +RS+HDA+ +V+ + +V GGGA E+ + + +
Sbjct: 370 QAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSK 429
Query: 486 KISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGT 545
I+ +Q AFA ALE IP L EN+G IE L +++ K G+
Sbjct: 430 TIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKG-EKWYGVVFETENI 488
Query: 546 NDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
D + V E K + +T+ +IL +D+
Sbjct: 489 GDNFAKFVWEPALVKINALNSATEATNLILSVDET 523
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 709 bits (1833), Expect = 0.0
Identities = 214/573 (37%), Positives = 322/573 (56%), Gaps = 54/573 (9%)
Query: 10 MMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGD 69
M G+P +IL + +R +G DA + +I+AA+ IA T++T+LGPKG+DKM+V S GD
Sbjct: 1 MAQLSGQPVVILP--EGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGD 58
Query: 70 VTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKG 129
+ VTND ATIL +D+ H AK+MV+++++QD E GDGTT VV+AG LL +AE LLD+
Sbjct: 59 IVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQN 118
Query: 130 IHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAE 189
IHP I G+ LAA+ A + L+ IA V+PD+ E L+K A T++ K +A+
Sbjct: 119 IHPSIITKGYALAAEKAQEILDEIA--IRVDPDDEETLLKIAATSITGKNAESHKELLAK 176
Query: 190 IAVNAVMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRD 247
+AV AV VA+ + K V+ + IK E K G +E++ LV+GVVIDK+ HP+MPK + +
Sbjct: 177 LAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVEN 236
Query: 248 VKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWG 307
K+A++ E + +T +++ S + + E++ MVD + TGA + Q G
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 308 FDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYN 367
DD A H L + + AVR V
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKK-------------------------------------- 318
Query: 368 QRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENS 427
+D+E +A TG +IV ++LT E LG A +V E ++M+ +E C+N
Sbjct: 319 -------SDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG--ENMIFVEGCKNP 369
Query: 428 KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKI 487
KAVTI IRGG + +I+E +R++ DA+ VV++++ + V+ GGA E+ AI + A ++
Sbjct: 370 KAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV 429
Query: 488 SSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTND 547
E A FADAL+ IP LAEN+GL +E L +V S +GID D
Sbjct: 430 GGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNR-GLGIGIDVFEGKPAD 488
Query: 548 MKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
M ++ +IE LR KKQ I +++ MIL+IDD+
Sbjct: 489 MLEKGIIEPLRVKKQAIKSASEAAIMILRIDDV 521
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 708 bits (1829), Expect = 0.0
Identities = 210/566 (37%), Positives = 318/566 (56%), Gaps = 52/566 (9%)
Query: 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTN 74
+ +L + KR +G DA + +I+A + IA T++++LGPKG+DKM+V GDV VTN
Sbjct: 2 SQQPGVLP--ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTN 59
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
DG TIL+ M V+H AK++++++++Q+ E+GDGTT VV+AG LL +AE LLD+ +HP
Sbjct: 60 DGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTI 119
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
+ G++ AAQ A + L+TIA V + E L K AMT++ K K ++AEI V A
Sbjct: 120 VVKGYQAAAQKAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEA 177
Query: 195 VMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILT 254
V AV D ++ V+ +LIK+E K G ++DT L+KGV++DK+ QMPK++ D K+A+L
Sbjct: 178 VSAVVD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLN 236
Query: 255 CPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANH 314
C E +T + + E + E++ MV ++KA+GA + CQ G DD A H
Sbjct: 237 CAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQH 296
Query: 315 LLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGH 374
L ++ + A R V
Sbjct: 297 YLAKEGIVAARRVKK--------------------------------------------- 311
Query: 375 TDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFI 434
+D+E +A TG ++ L+++ LG AGLV E D M+ +EEC++ KAVT+ I
Sbjct: 312 SDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS--GDSMIFVEECKHPKAVTMLI 369
Query: 435 RGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYA 494
RG + +IEE R++ DA+ VV + + R+V GGG+ EV ++ + A+ IS EQ A
Sbjct: 370 RGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 429
Query: 495 FRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVI 554
RAFADALE IP LAEN+GL IE L +V++ N G++ DM + V+
Sbjct: 430 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVV 489
Query: 555 EALRSKKQQILLSTQLVKMILKIDDI 580
E LR K Q I + + +M+L+IDD+
Sbjct: 490 EPLRVKTQAIQSAAESTEMLLRIDDV 515
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 703 bits (1818), Expect = 0.0
Identities = 164/582 (28%), Positives = 257/582 (44%), Gaps = 60/582 (10%)
Query: 15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTN 74
L ++I G+D +++A +AN +K+SLGP GLDKM+V GD TVTN
Sbjct: 7 NSRSDTLF--LGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTN 64
Query: 75 DGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIR 134
DGATIL L+DV H K++V+L+Q QD EIGDGTT VV++A LL++A L+ IHP
Sbjct: 65 DGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTT 124
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNA 194
I GF +A + A++ + + S V+ E LI A T++ SKII + + V+A
Sbjct: 125 IITGFRVALREAIRFINEVL-STSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDA 183
Query: 195 VMAVADLE---KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPK--ELRDVK 249
++AV + + + V G +++LV G ++ + MPK +VK
Sbjct: 184 LLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVK 243
Query: 250 LAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFD 309
+A L + R +++ E +++RK E V K+ GA + + G D
Sbjct: 244 IACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGID 303
Query: 310 DEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQR 369
D ++ ++ VR D+ IA TG +V L E+
Sbjct: 304 DLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETF------------- 350
Query: 370 SHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKA 429
S LG V + F D ++I+ +
Sbjct: 351 --------------------------ESSYLGLCDEVVQAKFS--DDECILIKGTSKHSS 382
Query: 430 VTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISS 489
+I +RG N ++E +RS+HD+L VV+ + VV GGG E + I + A + S
Sbjct: 383 SSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGS 442
Query: 490 IEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVK-----------EVNPALGI 538
EQ A FA AL IP LA N+ E + +++S G+
Sbjct: 443 REQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGL 502
Query: 539 DCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
D + D V+E SK + + + + IL+ID +
Sbjct: 503 DLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTM 544
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 702 bits (1814), Expect = 0.0
Identities = 161/564 (28%), Positives = 269/564 (47%), Gaps = 52/564 (9%)
Query: 27 QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD 86
R G +++AA +IAN +K+SLGP GLDKM+V GDVT+TNDGATILKL++V+
Sbjct: 3 GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 62
Query: 87 HEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
H AK++ +L+ QD E+GDGTT VV++A LL+ A+ L+ + IHP + G+ LA + A
Sbjct: 63 HPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEA 122
Query: 147 VKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRD- 205
V+++ + + LI A T++ SK+I A + V+AV+A+ + R
Sbjct: 123 VRYISENL-IINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQ 181
Query: 206 --VNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK 263
I V G ++ML+ G ++ MPK + + K+A L + + K
Sbjct: 182 PRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMK 241
Query: 264 TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPA 323
+ + E ++R+ E + + K+ ATGA + + G DD ++ A
Sbjct: 242 LGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMA 301
Query: 324 VRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIV 383
VR V D++ IA +G ++ L E+
Sbjct: 302 VRRVLKRDLKRIAKASGATVLSTLANLEGEETF--------------------------- 334
Query: 384 TGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIE 443
+ LG+A V + D +++I+ + + ++ +RG N + +
Sbjct: 335 ------------EASMLGQAEEVVQERIC--DDELILIKNTKARTSASVILRGANDFMCD 380
Query: 444 EAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALE 503
E +RS+HDALCVV+ ++ VV GGGA E + +I + A + S EQ A FA +L
Sbjct: 381 EMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLL 440
Query: 504 SIPLALAENSGLSPIETLTEVKSRQVK-------EVNPALGIDCMLNGTNDMKQQNVIEA 556
IP LA N+ + + ++++ + + +G+D + D KQ V E
Sbjct: 441 VIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEP 500
Query: 557 LRSKKQQILLSTQLVKMILKIDDI 580
K + + +T+ IL+IDD+
Sbjct: 501 TIVKVKSLKFATEAAITILRIDDL 524
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 700 bits (1810), Expect = 0.0
Identities = 165/556 (29%), Positives = 290/556 (52%), Gaps = 51/556 (9%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
KR G +I AAK IA+ ++T LGPK + KM++ G + +TNDG IL+ + V H
Sbjct: 3 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQH 62
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
AK M+++S++QD+E+GDGTT V++LAG +L AEH L++ +HP + + A +
Sbjct: 63 PAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMI 122
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
L+ I+ PV+ N + ++ +++ +K+I++ IA++AV V E
Sbjct: 123 STLKKIS--IPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKE 180
Query: 208 F---ELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT 264
+ +VE GG +ED+ +++GV+I+KD +HP+M + +++ ++ +L E + ++
Sbjct: 181 IDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 240
Query: 265 KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAV 324
+ ++++ ED+ + + E+E + + + + I + G D A H L++ + A+
Sbjct: 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAI 300
Query: 325 RWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVT 384
R V D IA G RIV R EEL E +G
Sbjct: 301 RRVRKTDNNRIARACGARIVSRPEELREEDVGTG-------------------------- 334
Query: 385 GGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEE 444
AGL+ G ++ I EC++ KA TI +RG +K I+ E
Sbjct: 335 ------------------AGLLEIKKIG--DEYFTFITECKDPKACTILLRGASKEILSE 374
Query: 445 AKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALES 504
+R++ DA+ V RN++ + ++V GGGA+E++ A A+ ++ ++ +EQ+ +RA A ALE
Sbjct: 375 VERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEV 434
Query: 505 IPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQI 564
IP L +N G S I LT ++++ +E G++ DMK+ + E L K Q
Sbjct: 435 IPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTY 494
Query: 565 LLSTQLVKMILKIDDI 580
+ + ++L+IDDI
Sbjct: 495 KTAVETAVLLLRIDDI 510
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 700 bits (1809), Expect = 0.0
Identities = 157/566 (27%), Positives = 264/566 (46%), Gaps = 58/566 (10%)
Query: 24 QQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLM 83
++ G + S+I A + IA ++T+LGP+G+DK++V G T++NDGATILKL+
Sbjct: 1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL 60
Query: 84 DVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAA 143
DV H AK +V +++SQD E+GDGTT V +LA L+Q + +++G+HP I F A
Sbjct: 61 DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTAT 120
Query: 144 QCAVKHLETIADSFPVNPDNL--EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL 201
Q AV ++ IA + + L K AMT L SK+I++ A++ V+AVM + D
Sbjct: 121 QLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDD- 179
Query: 202 EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP---QMPKELRDVKLAILTCPFE 258
+ ++I ++ GG LE++ LV GV K FS+ PK+ + +A+L E
Sbjct: 180 ---LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELE 236
Query: 259 PPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQ 318
K + V +VEDY+ + E ++K+ +GA + + + D A
Sbjct: 237 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFAD 296
Query: 319 KQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIE 378
+ + V D++
Sbjct: 297 RDMFCAGRVPE---------------------------------------------EDLK 311
Query: 379 LIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGN 438
+ GG I L+S+ LG+ + E G + C +K TI +RGG
Sbjct: 312 RTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GERYNFFTGCPKAKTCTIILRGGA 369
Query: 439 KMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAF 498
+ +EE +RS+HDA+ +VR + + VV GGGA E+ + + + I +Q A+
Sbjct: 370 EQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAY 429
Query: 499 ADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALR 558
A ALE IP L +N+G L ++++R + G+D D + V E
Sbjct: 430 AKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GMWYGVDINTEDIADNFEAFVWEPAM 488
Query: 559 SKKQQILLSTQLVKMILKIDD-IRSP 583
+ + +++ +I+ +D+ I++P
Sbjct: 489 VRINALTAASEAACLIVSVDETIKNP 514
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 696 bits (1800), Expect = 0.0
Identities = 177/568 (31%), Positives = 304/568 (53%), Gaps = 55/568 (9%)
Query: 20 ILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATI 79
+ N + + + K++I+AA+++A+ ++TSLGPKG+DKM+ +S G++ ++NDG TI
Sbjct: 5 VPSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTI 64
Query: 80 LKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGF 139
LK M + H +A+++V++S +QD E GDGTT VV+L GALL AE LL+KGIHP IAD F
Sbjct: 65 LKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSF 124
Query: 140 ELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVA 199
+ AA+ +V L + V+ + E L++ A T+L SKI+++ +A +AV++V+ ++
Sbjct: 125 QSAAKRSVDILLEMCH--KVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKIS 182
Query: 200 DLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH-PQMPKELRDVKLAILTCPFE 258
D ++V+ I++ KVGG ++DT ++ GVV+ + P K+ ++
Sbjct: 183 DENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQIS 242
Query: 259 PPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGF-----DDEAN 313
PP+P T++N+ V ++ K E+ ++ K+K + + Q +D A
Sbjct: 243 PPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLAL 302
Query: 314 HLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAG 373
H L + + V+ +
Sbjct: 303 HFLSKLNIMVVKDIER-------------------------------------------- 318
Query: 374 HTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTK-DHMLVIEECENSKAVTI 432
+IE ++ G + + E T ++L A LV EI +K + I V++
Sbjct: 319 -EEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSV 377
Query: 433 FIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQ 492
IRG N MII+E +RS+HDALCV+R LV E ++ GGGA E+ + ++ EA + ++
Sbjct: 378 VIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQA 437
Query: 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQN 552
+ ++ FA ALE IP LAEN+GL+ I+ +TE++S+ GI +GT + +++
Sbjct: 438 FIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENG-ELNDGISVRRSGTTNTYEEH 496
Query: 553 VIEALRSKKQQILLSTQLVKMILKIDDI 580
+++ + I L+++ VK IL+IDDI
Sbjct: 497 ILQPVLVSTSAITLASECVKSILRIDDI 524
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 692 bits (1788), Expect = 0.0
Identities = 171/568 (30%), Positives = 277/568 (48%), Gaps = 59/568 (10%)
Query: 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDV-TVTND 75
I +Q ++R +A S V A + + +K++LGPKG+DK++ S+ + VTND
Sbjct: 2 SVQIFGDQVTEER--AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTND 59
Query: 76 GATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKG-IHPIR 134
GATILK + +D+ AK++V +S+ QDDE+GDGTT V VL+ LL +AE L+D+ IHP
Sbjct: 60 GATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQT 119
Query: 135 IADGFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKIINKCHRQMAEIAVN 193
I +G+ LA+ A+ L A + E LI A TTL SKI+++ AE+A N
Sbjct: 120 IIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATN 179
Query: 194 AVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAIL 253
A++ + K N E I++ +GGKL D+ L +G ++ K F + PK + + K+ I
Sbjct: 180 AILRL----KGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGN-NQPKRIENAKILIA 234
Query: 254 TCPFEPPRPKTK-HNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEA 312
+ + K V S +L K E+EK + + K+ G I + D
Sbjct: 235 NTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYP 294
Query: 313 NHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHA 372
L + ++
Sbjct: 295 EQLFTDLGINSIEHADF------------------------------------------- 311
Query: 373 GHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTI 432
+E +A+VTGG +V F+E + KLG+ ++ EI G + L C+ +A TI
Sbjct: 312 --EGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLG--EQPFLKFSGCKAGEACTI 367
Query: 433 FIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQ 492
+RG ++EA+RS+HDAL V+ E R V GGG AE+ + AV EA I +
Sbjct: 368 VLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKS 427
Query: 493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQN 552
A AFA AL +P LA+N+G E +++++S G+D DM+Q
Sbjct: 428 LAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNG-ISTSGLDLNNGTIADMRQLG 486
Query: 553 VIEALRSKKQQILLSTQLVKMILKIDDI 580
++E+ + K+ + +++ +++L++D+I
Sbjct: 487 IVESYKLKRAVVSSASEAAEVLLRVDNI 514
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 689 bits (1781), Expect = 0.0
Identities = 134/583 (22%), Positives = 259/583 (44%), Gaps = 64/583 (10%)
Query: 16 RPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTND 75
P L Q + I I A + + TS+GP G +K++V+ G + +TND
Sbjct: 8 NPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITND 67
Query: 76 GATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRI 135
AT+L+ +D+ H K++V ++ Q ++GDGT V++LAG LL +E L+ G+ + I
Sbjct: 68 AATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEI 127
Query: 136 ADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAV 195
G+ +A + +K L+ + + ++ L+K + SK ++E+ AV
Sbjct: 128 IQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGS-EDILSELVSEAV 186
Query: 196 MAVADL-----EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKD-FSHPQMPKELRDVK 249
V + E N + I+V +GG L ++ ++KG+V +++ H + E + K
Sbjct: 187 SHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHK 246
Query: 250 LAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFD 309
+A+ TCP + +TK + + + ++ + K E+++ +M+ ++ G + G
Sbjct: 247 VAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVG 306
Query: 310 DEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQR 369
+ A H L + + ++
Sbjct: 307 ELALHYLNRYGILVLKVPSK---------------------------------------- 326
Query: 370 SHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKA 429
++ + V G +PR T E+LG V+ + G + + E+ E S+
Sbjct: 327 -----FELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRT 381
Query: 430 VTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTEN--RVVYGGGAAEVSCAIAVAAEADKI 487
TI +RG + +++ +R+I D + V+ L+ + +++ G GA E+ + ++
Sbjct: 382 STIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERT 441
Query: 488 SSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQ-------VKEVNPALGIDC 540
+ Q A + FA A E +P LAE +GL E L + + VK + G+D
Sbjct: 442 PGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDI 501
Query: 541 MLN---GTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
G D++++N+ + L +KK I ++T+ +L ID I
Sbjct: 502 DGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQI 544
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 686 bits (1774), Expect = 0.0
Identities = 186/563 (33%), Positives = 304/563 (53%), Gaps = 57/563 (10%)
Query: 25 QEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMD 84
Q R S+I AAK +A+ ++TSLGPKG+DKM+ GDVT+TNDGATILK M
Sbjct: 2 AYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQ 61
Query: 85 VDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQ 144
V H A+++V+LS++QD E GDGTT VV++AG+LL+ LL KGIHP I++ F+ A +
Sbjct: 62 VLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALE 121
Query: 145 CAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVAD-LEK 203
++ L ++ PV + E L+ +A T+L SK++++ ++ ++V+AVM V D
Sbjct: 122 KGIEILTDMSR--PVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATA 179
Query: 204 RDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK 263
V+ IK+ K+GG ++D LV+G+V+ + ++ + + + K+ ++ P+
Sbjct: 180 TSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTD 238
Query: 264 TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWG-----FDDEANHLLLQ 318
+ + V + + E+ ++V ++K TG + + Q D A H L +
Sbjct: 239 MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 298
Query: 319 KQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIE 378
++ V+ + DIE
Sbjct: 299 MKIMVVKDIER---------------------------------------------EDIE 313
Query: 379 LIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECEN-SKAVTIFIRGG 437
I G + V ++ T++ LG A L E+S + ++ I C + K VTI +RG
Sbjct: 314 FICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGS-GKLIKITGCASPGKTVTIVVRGS 372
Query: 438 NKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRA 497
NK++IEEA+RSIHDALCV+R LV + ++ GGGA E+ A+ + + +S +E Y RA
Sbjct: 373 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRA 432
Query: 498 FADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEAL 557
FADA+E IP LAEN+GL+PI T+TE+++R + GI+ G +++ ++ V++ L
Sbjct: 433 FADAMEVIPSTLAENAGLNPISTVTELRNRHAQG-EKTTGINVRKGGISNILEELVVQPL 491
Query: 558 RSKKQQILLSTQLVKMILKIDDI 580
+ L+T+ V+ ILKIDD+
Sbjct: 492 LVSVSALTLATETVRSILKIDDV 514
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 685 bits (1769), Expect = 0.0
Identities = 134/581 (23%), Positives = 259/581 (44%), Gaps = 66/581 (11%)
Query: 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDG 76
+L + E R + A+K ++ +A+ + + L+T+LGPKG KM+V G++ +T DG
Sbjct: 2 SLQLLNPKAESLR--RDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDG 59
Query: 77 ATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIA 136
+L M + A L+ + + +QD+ GDGTT VV L G LL QA + +G+HP I
Sbjct: 60 KVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIIT 119
Query: 137 DGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVM 196
DGFE+A + ++K L+ S ++ E L++ A ++L +K+ + I +AV+
Sbjct: 120 DGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVL 179
Query: 197 AVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCP 256
+V D + +++ ++++ +DT +KG+V+D HP MP +++ + IL
Sbjct: 180 SVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVS 239
Query: 257 FEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVK----------ATGATLAICQW 306
E + + S + +L E++ + + K+ + I Q
Sbjct: 240 LEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQK 299
Query: 307 GFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWY 366
G D + + + + A+R
Sbjct: 300 GIDPMSLDVFAKHNILALRRAKR------------------------------------- 322
Query: 367 NQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECEN 426
++E + +VTGG E+L+ + LG +GLV + + G ++ + E +
Sbjct: 323 --------RNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG--EEKFTYVTENTD 372
Query: 427 SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADK 486
K+ TI I+G + + K ++ D L V N++ + ++ G GA ++ + + +
Sbjct: 373 PKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMN 432
Query: 487 ---ISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSR----QVKEVNPALGID 539
+ AFA+AL IP L +NSG P++ L V+ Q + +G+D
Sbjct: 433 KLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVD 492
Query: 540 CMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ + D + + ++ R + I +T + +L D++
Sbjct: 493 LNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDEL 533
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 683 bits (1764), Expect = 0.0
Identities = 164/557 (29%), Positives = 262/557 (47%), Gaps = 57/557 (10%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSS--DGDVTVTNDGATILKLMDV 85
A S + A I + +K++LGPKG+DK+++SS D + VTNDGATILK + V
Sbjct: 4 DEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGV 63
Query: 86 DHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQC 145
D+ AK++V +S+ QDDE+GDGTT V VLA LL +AE L+ K IHP I G+ A +
Sbjct: 64 DNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKA 123
Query: 146 AVKHLETIA-DSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKR 204
A + L A D + L+ A TTL SK++ ++AV AV+ +
Sbjct: 124 ARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKG---- 179
Query: 205 DVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT 264
N E I V K+GG L D+ L +G ++DK PK + + K+ I + + K
Sbjct: 180 SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV-NQPKRIENAKILIANTGMDTDKIKI 238
Query: 265 -KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPA 323
+ V S E+ E+EK V+++ G I + + L + A
Sbjct: 239 FGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMA 298
Query: 324 VRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIV 383
+ +E +A+V
Sbjct: 299 IEHADF---------------------------------------------VGVERLALV 313
Query: 384 TGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIE 443
TGG I F+ KLG L+ E+ G +D ++ +A TI +RG + I++
Sbjct: 314 TGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILD 371
Query: 444 EAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALE 503
EA+RS+HDALCV+ V ++R VYGGG +E+ A AV A + E A ++A AL
Sbjct: 372 EAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALR 431
Query: 504 SIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQ 563
+P +A+N+G + + ++++ + G+D DM + E+ + K+Q
Sbjct: 432 MLPTIIADNAGYDSADLVAQLRAAHSEG-KTTAGLDMKEGTIGDMSVLGITESFQVKRQV 490
Query: 564 ILLSTQLVKMILKIDDI 580
+L + + ++IL++D+I
Sbjct: 491 LLSAAEAAEVILRVDNI 507
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 681 bits (1759), Expect = 0.0
Identities = 143/558 (25%), Positives = 257/558 (46%), Gaps = 52/558 (9%)
Query: 25 QEQKRIIGN-DAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLM 83
+ K G +A+ +I A K +A T +T+ GP G++KM+++ + VTND ATIL+ +
Sbjct: 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 84 DVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAA 143
+V H AK++V S Q+ E+GDGT V+V AGALLE AE LL G+ + +G+E+A
Sbjct: 61 EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 144 QCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEK 203
+ A + L + N +++ + T++ SK +A++ A +++ +
Sbjct: 121 KKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGN-EVFLAKLIAQACVSIFP-DS 178
Query: 204 RDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK 263
N + I+V +G + + ++ G+V K+ ++D K+A+ +CPF+ +
Sbjct: 179 GHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITE 236
Query: 264 TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPA 323
TK + ++S E+ K E+ + V + TGA + + D A H + +
Sbjct: 237 TKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIML 296
Query: 324 VRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIV 383
VR D+ +
Sbjct: 297 VRLNSK---------------------------------------------WDLRRLCKT 311
Query: 384 TGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIE 443
G +PR E++G V G T+ ++ E E+ TI +RG +++
Sbjct: 312 VGATALPRLNPPVLEEMGHCDSVYLSEVGDTQV-VVFKHEKEDGAISTIVLRGSTDNLMD 370
Query: 444 EAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALE 503
+ +R++ D + + L + R+V GGGA E+ A + + + +EQYA + FA+A E
Sbjct: 371 DIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFE 430
Query: 504 SIPLALAENSGLSPIETLTEVKSRQVK-EVNPALGIDCMLNGTNDMKQQNVIEALRSKKQ 562
+IP ALAENSG+ E ++++ + + N L I+ + DM + V++ K
Sbjct: 431 AIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYW 490
Query: 563 QILLSTQLVKMILKIDDI 580
I L+T +L++D I
Sbjct: 491 AIKLATNAAVTVLRVDQI 508
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 676 bits (1747), Expect = 0.0
Identities = 148/562 (26%), Positives = 256/562 (45%), Gaps = 61/562 (10%)
Query: 28 KRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDH 87
+ A+ +I AA+ + + L+T+LGPKG KM+VS GD+ +T DG +L M + H
Sbjct: 4 EVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQH 63
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
A L+ +++ +QDD GDGTT V++ G LL+QA+ + +G+HP I +GFE A + A+
Sbjct: 64 PTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKAL 123
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
+ LE + D E LI A T+L +K+ + + E V++++A+ + ++
Sbjct: 124 QFLEQVKV--SKEMDR-ETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKK-QDEPID 179
Query: 208 FELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHN 267
++++ DT L++G+V+D HP M K + D + E + +
Sbjct: 180 LFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSG 239
Query: 268 LDVQSVEDYKELRKYEQEKFASMVDKVKATGA---------TLAICQWGFDDEANHLLLQ 318
+S E+ ++L K E++ V K+ + I Q G D + L +
Sbjct: 240 FFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAK 299
Query: 319 KQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIE 378
+ + A+R ++E
Sbjct: 300 EGIIALRRAKR---------------------------------------------RNME 314
Query: 379 LIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGN 438
+ + GG + ++L + L V E + G ++ IE+C N ++VT+ I+G N
Sbjct: 315 RLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLG--EEKFTFIEKCNNPRSVTLLIKGPN 372
Query: 439 KMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAF 498
K + + K +I D L V+N + + VV G GA EV+ A A+ + Q +AF
Sbjct: 373 KHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAF 432
Query: 499 ADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALR 558
ADAL IP LA+NSG ETL +V++ + +G+D + + +
Sbjct: 433 ADALLIIPKVLAQNSGFDLQETLVKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYC 491
Query: 559 SKKQQILLSTQLVKMILKIDDI 580
KKQ + T + IL +D+I
Sbjct: 492 VKKQLLHSCTVIATNILLVDEI 513
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 648 bits (1673), Expect = 0.0
Identities = 177/522 (33%), Positives = 288/522 (55%), Gaps = 53/522 (10%)
Query: 62 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 121
M+V S GD+ +TNDGATILK MD+ H AK++V++S++QD E+GDGTT VL+G LL +
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 122 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 181
AE L+ KG+H I++G+ AA+ + LETI ++PD+ LIK A T + K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETIT--IAISPDDEAALIKIAGTAITGKGAE 118
Query: 182 KCHRQMAEIAVNAVMAVADLEKRDVN---FELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 238
+++ + V AV ++ + E+ + E IK+E + GG ++D+ L+ G+VIDK+ SH
Sbjct: 119 AYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSH 178
Query: 239 PQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 298
P MP+++ + K+ +L+CP E + + + + S + E++ M +KV A+G
Sbjct: 179 PNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASG 238
Query: 299 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKA 358
A + CQ G DD A + + + + AVR V
Sbjct: 239 ANVVFCQKGIDDMAQYYIEKAGIYAVRRVKK----------------------------- 269
Query: 359 GLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHM 418
+D++ ++ VTG I+ +++T+E +G AGLV E M
Sbjct: 270 ----------------SDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRG--GKM 311
Query: 419 LVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAI 478
+ C+NSKAVT+ + GG + +++ +++DAL VV ++ + +VV GGG++EV ++
Sbjct: 312 TYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSL 371
Query: 479 AVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGI 538
++ A + EQ A FA+ALE IP+ALAEN+GL PI+ + E++S+ K N G+
Sbjct: 372 RLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKG-NKNAGL 430
Query: 539 DCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ DM + +VIE LR K Q I + + MIL+IDD+
Sbjct: 431 NVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDV 472
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 613 bits (1582), Expect = 0.0
Identities = 162/632 (25%), Positives = 292/632 (46%), Gaps = 117/632 (18%)
Query: 17 PFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDG 76
P + + Q+R G A S+I AAK +A+ ++T LGPK + KM++ G + +TNDG
Sbjct: 4 PVVFMN--ASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDG 61
Query: 77 ATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ-AEHLLDKGIHPIRI 135
IL+ +DV H AK M++LS++QD+E+GDGTT V++LAG +L Q A +L++K IHP+ I
Sbjct: 62 HAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVII 121
Query: 136 ADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAV 195
+ A A++ ++ ++ PV+ +N + K ++G+K + +M E+A++AV
Sbjct: 122 IQALKKALTDALEVIKQVSK--PVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAV 179
Query: 196 MAVADLEKRDVNFE---------LIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELR 246
V + V E ++VE GG + D+ ++KGV+++KD HP+M + +
Sbjct: 180 KTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIE 239
Query: 247 DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQW 306
+ ++ +L CP E + +++ N++++ ED+ + + E+E+ M +++ A TL I +
Sbjct: 240 NPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEK 299
Query: 307 GFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWY 366
G D A H LL+ +R V D IA VTG IV R E+L +G
Sbjct: 300 GVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVG---------- 349
Query: 367 NQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECEN 426
GL + G ++ ++ C+
Sbjct: 350 ----------------------------------TNCGLFKVEMIG--DEYFSFLDNCKE 373
Query: 427 SKAVTIFIRGGNKMIIEE------------------------------------------ 444
+ + + + +
Sbjct: 374 PGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKAC 433
Query: 445 ---AKRSIHDALC-----------VVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSI 490
+ D L V RN++ + GGGA E++ ++ +A +A ++ I
Sbjct: 434 TIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGI 493
Query: 491 EQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQ 550
+Q+ ++A ADA+E IP L +N+G PI L++++++ + N GID DM
Sbjct: 494 QQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG-NFTTGIDGDKGKIVDMVS 552
Query: 551 QNVIEALRSKKQQILLSTQLVKMILKIDDIRS 582
+ E K+Q + + + ++L++DDI S
Sbjct: 553 YGIWEPEVIKQQSVKTAIESACLLLRVDDIVS 584
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 222 bits (568), Expect = 1e-69
Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 46/224 (20%)
Query: 221 LEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELR 280
+ED+ +++GV+I+KD +HP+M + +++ ++ +L E + +++ ++++ ED+ +
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRIL 60
Query: 281 KYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTG 340
+ E+E + + + + I + G D A H L++ + A+R V D IA G
Sbjct: 61 QMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACG 120
Query: 341 GRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKL 400
RIV R EEL + +G
Sbjct: 121 ARIVSRPEELREDDVGTG------------------------------------------ 138
Query: 401 GKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEE 444
AGL+ G ++ I +C++ KA TI +RG +
Sbjct: 139 --AGLLEIKKIG--DEYFTFITDCKDPKACTILLRGASHHHHHH 178
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 188 bits (481), Expect = 3e-57
Identities = 43/134 (32%), Positives = 74/134 (55%)
Query: 227 VKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEK 286
+ G+VIDK+ H +MP +++ K+A++ E + + + + + ++ E
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 287 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPR 346
F MV+K+K +GA + +CQ G DD A H L ++ + AVR V D+E +A TG +IV
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 347 FEELTSEKLGKAGL 360
++LT LG+A
Sbjct: 121 LDDLTPSVLGEAET 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 9e-12
Identities = 67/435 (15%), Positives = 133/435 (30%), Gaps = 124/435 (28%)
Query: 235 DFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKE--LRKYEQEKFASMVD 292
DF + + +D+ L++ N D + V+D + L K E + D
Sbjct: 8 DFETGEHQYQYKDI-LSVF-------EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 293 KVKATGATLAICQWGFDDEANHLLLQKQLPAV-RWVGG---PDIELIAIVTGGRIVPRFE 348
V T W LL KQ V ++V + + +
Sbjct: 60 AVSGTLRLF----W--------TLLSKQEEMVQKFVEEVLRINYKFLM-----------S 96
Query: 349 ELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFE----------ELTSE 398
+ +E+ + Y ++ + D ++ A V R + EL
Sbjct: 97 PIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFA----KYNVSRLQPYLKLRQALLELRPA 150
Query: 399 KL----GKAGLVREISFGTTKDHMLVIEECENSKAVT-----IF-IRGGNKMIIEEAKRS 448
K G G G T + ++ C + K IF + N S
Sbjct: 151 KNVLIDGVLG------SGKT---WVALDVCLSYKVQCKMDFKIFWLNLKN-------CNS 194
Query: 449 IHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLA 508
L +++ L+ + + ++ S I + + + + + + L L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LV 249
Query: 509 LAENSGLSPIETLTEVKSRQVKEVNPALGIDC-MLNGTNDMKQQNVIEALRSKKQQI--- 564
L V++ + A + C +L T + V + L +
Sbjct: 250 LL------------NVQNAKAWN---AFNLSCKILLTTRF---KQVTDFLSAATTTHISL 291
Query: 565 ------LLSTQLVKMILKIDDIRS---PNDGICDE-----EMAAAWTSSMEVTANNWKQ- 609
L ++ ++LK D R P + + + A T +NWK
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 610 --ERMTVLLSKELDH 622
+++T ++ L+
Sbjct: 351 NCDKLTTIIESSLNV 365
Score = 66.0 bits (160), Expect = 2e-11
Identities = 89/570 (15%), Positives = 179/570 (31%), Gaps = 159/570 (27%)
Query: 16 RPFIILRNQQEQ--KRIIGNDAIKSHIVAAKN---IANTLKTSLGPKGLDKMMVSSDGDV 70
R F L ++QE+ ++ + V N + + +KT + M D
Sbjct: 66 RLFWTLLSKQEEMVQKFVEE-------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 71 TVTNDGATILKLMDV--DHEIAKLMVQLSQSQDDEI----GDGTTGVVVLAGALL--EQA 122
ND K +V KL L + + + G +G +A + +
Sbjct: 119 L-YNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 123 EHLLDKGIHPIRIADGFELAAQCAVKHLET----IADSFPVNPDNLEPL------IKTAM 172
+ +D I + + + + ++ L+ I ++ D+ + I+ +
Sbjct: 177 QCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 173 TTL-----------------GSKIIN----KC-------HRQMAEIAVNAVMAVADLEKR 204
L +K N C +Q+ + A L+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 205 DVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDV---KLAIL--TCPFEP 259
+ +V+ +L+K +D +P+E+ +L+I+ +
Sbjct: 295 SMTLTPDEVKS---------LLLK--YLDCRPQ--DLPREVLTTNPRRLSIIAESIRDGL 341
Query: 260 PRPKT-KHN------------LDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQW 306
KH L+V +Y+++ +++ + L++ W
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDR--LSVFPPSAHIPTILLSLI-W 396
Query: 307 GFDDE------ANHL----LLQKQLPAVRWVGGPDIELIAIVTGG-------RIVPRF-- 347
+ N L L++KQ P + P I L V IV +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 348 -EELTSEKLGKAGLGNQFWYNQRSHAGH--TDIELIAIVTGGRIVP---RFEELTSEKLG 401
+ S+ L L ++Y SH GH +IE +T R+V RF E +K+
Sbjct: 456 PKTFDSDDLIPPYLDQ-YFY---SHIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIR 508
Query: 402 KAGLVREISFGTT---------KDHMLVIEECENS-------KAVTIFIRGGNKMIIEEA 445
S K ++ C+N A+ F+ + +I
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYI-----CDNDPKYERLVNAILDFLPKIEENLI--- 560
Query: 446 KRSIHDALCVVR-NLVTENRVVYGGGAAEV 474
++R L+ E+ ++ +V
Sbjct: 561 ---CSKYTDLLRIALMAEDEAIFEEAHKQV 587
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 58.7 bits (143), Expect = 3e-09
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 12/117 (10%)
Query: 46 IANTLKTSLGPKG----LDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLS 97
+A+ +K +LGPKG L+K G T+TNDG +I K ++++ A+L+ +++
Sbjct: 22 LADAVKVTLGPKGRNVVLEK----KWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVA 77
Query: 98 QSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
+ DD GDGTT VLA AL+ + + G +P+ + G E A + + L A
Sbjct: 78 KKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGA 134
Score = 31.4 bits (72), Expect = 0.92
Identities = 49/216 (22%), Positives = 79/216 (36%), Gaps = 55/216 (25%)
Query: 380 IAIVTGGRIVP-----RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFI 434
+AI+TGG+++ E LGKA V TKD ++E ++ A+ +
Sbjct: 290 MAILTGGQVISEEVGLTLENADLSLLGKARKVV-----VTKDETTIVEGAGDTDAIAGRV 344
Query: 435 R--------------------------GGNKMI---------IEEAKRSIHDALCVVRNL 459
GG +I ++E K I DA+ +
Sbjct: 345 AQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAA 404
Query: 460 VTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPL-ALAENSGLSPI 518
V E +V GGG + A + + K+ E ALE+ PL +A NSGL P
Sbjct: 405 VEEG-IVAGGGVTLLQAAPTL--DELKLEGDEATGANIVKVALEA-PLKQIAFNSGLEP- 459
Query: 519 ETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVI 554
V + +V+ + G++ D+ V
Sbjct: 460 ----GVVAEKVRNLPAGHGLNAQTGVYEDLLAAGVA 491
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 58.3 bits (142), Expect = 4e-09
Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 12/117 (10%)
Query: 46 IANTLKTSLGPKG----LDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLS 97
+A+ +K +LGPKG +DK S G +T DG ++ K +++ + A+++ +++
Sbjct: 23 LADAVKVTLGPKGRNVVIDK----SFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVA 78
Query: 98 QSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
+DE GDGTT VLA A++ + + G++P+ + G ++A V+ +++ A
Sbjct: 79 SRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAA 135
Score = 28.7 bits (65), Expect = 6.0
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 49/179 (27%)
Query: 380 IAIVTGGRIVP-----RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFI 434
IAI+TGG+++ + E +T + LG+A V KD+ +++ + +
Sbjct: 292 IAILTGGQVISEDLGMKLENVTIDMLGRAKKVS-----INKDNTTIVDGAGEKAEIEARV 346
Query: 435 R--------------------------GGNKMI---------IEEAKRSIHDALCVVRNL 459
GG +I ++E K + DAL R
Sbjct: 347 SQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAA 406
Query: 460 VTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPL-ALAENSGLSP 517
V E +V GGG A V A + +S + ALE+ P+ +AEN+G+
Sbjct: 407 VQEG-IVVGGGVALVQGAKVL-EGLSGANSDQDAGIAIIRRALEA-PMRQIAENAGVDG 462
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 57.9 bits (141), Expect = 6e-09
Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 12/117 (10%)
Query: 46 IANTLKTSLGPKG----LDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLS 97
+AN +K +LGP+G L+K G T+T DG T+ K ++++ + A+L+ +++
Sbjct: 22 VANAVKVTLGPRGRNVVLEK----KFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVA 77
Query: 98 QSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
+D GDGTT VLA A++ + + G +P+ + G E A + AV+ ++ +A
Sbjct: 78 SKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALA 134
Score = 34.8 bits (81), Expect = 0.079
Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 51/216 (23%)
Query: 380 IAIVTGGRIVP-----RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFI 434
IA VTGG ++ + E T LG+A VR TKD ++ + + I
Sbjct: 290 IAAVTGGTVISEELGFKLENATLSMLGRAERVR-----ITKDETTIVGGKGKKEDIEARI 344
Query: 435 R--------------------------GGNKMI---------IEEAKRSIHDALCVVRNL 459
GG +I ++E K DAL R
Sbjct: 345 NGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAA 404
Query: 460 VTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPL-ALAENSGLSPI 518
V E +V GGG + AV K+ E + ALE P +AEN+G
Sbjct: 405 VEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEE-PARQIAENAGYEGS 462
Query: 519 ETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVI 554
+ ++ + + NP G + DM + ++
Sbjct: 463 VIVQQILA---ETKNPRYGFNAATGEFVDMVEAGIV 495
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 57.6 bits (140), Expect = 7e-09
Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 12/117 (10%)
Query: 46 IANTLKTSLGPKG----LDKMMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLS 97
+A+ +K +LGPKG LDK S G T+T DG ++ + ++++ + A+++ +++
Sbjct: 22 LADAVKVTLGPKGRNVVLDK----SFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVA 77
Query: 98 QSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 154
+D GDGTT VLA A++ + + G++P+ + G + A AV+ L+ ++
Sbjct: 78 SKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 134
Score = 30.6 bits (70), Expect = 1.7
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 54/216 (25%)
Query: 380 IAIVTGGRIVP-----RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFI 434
IA +TGG ++ E+ T E LG+A V KD +I+ A+ +
Sbjct: 291 IATLTGGTVISEEIGMELEKATLEDLGQAKRVV-----INKDTTTIIDGVGEEAAIQGRV 345
Query: 435 R--------------------------GGNKMI---------IEEAKRSIHDALCVVRNL 459
GG +I ++E K + DAL R
Sbjct: 346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA 405
Query: 460 VTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPL-ALAENSGLSPI 518
V E VV GGG A + A + A+ ++ + + A+E+ PL + N G P
Sbjct: 406 VEEG-VVAGGGVALIRVASKL-ADLRGQNADQNVGIKVALRAMEA-PLRQIVLNCGEEP- 461
Query: 519 ETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVI 554
V + VK + G + +M ++
Sbjct: 462 ----SVVANTVKGGDGNYGYNAATEEYGNMIDMGIL 493
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 9e-06
Identities = 79/496 (15%), Positives = 127/496 (25%), Gaps = 200/496 (40%)
Query: 9 LMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSD- 67
L + EF + L GND I H +AAK + T + K L K +++
Sbjct: 86 LCLTEFENCY--LE---------GND-I--HALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 68 -GDVTVTNDGATILKLMDVDHEIAKLMVQLS-Q--SQD--DE-----------IGDGTTG 110
+ L V A+L+ Q + D +E +GD
Sbjct: 132 MAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD---- 186
Query: 111 VVVLAGALLEQ-------AEHLLDKGI-------HPIRIADGFELAA-----------QC 145
++ + L + AE + +G+ +P D L + Q
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 146 AVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAE-IAV---------NAV 195
A H A P L +K A T ++ A IA +
Sbjct: 247 A--HYVVTAKLLGFTPGELRSYLKGA-TGHSQGLV------TAVAIAETDSWESFFVSVR 297
Query: 196 MAVADL-----------EKRDVNFELIKVEGKVGGKLEDTML-VKGV-------VIDKDF 236
A+ L + +++ + + ML + + ++K
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 237 SH--------------PQM------PKEL-------RDVK-------------------- 249
SH + P+ L R K
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 250 ---LAILTCPF-----EPPRPKTKHNLD--------------VQSVEDYKELRKYEQEKF 287
L + PF P +L V D +LR
Sbjct: 418 NRFLPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 288 ASMVDKVKATGATLAICQWG--FDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVP 345
+VD + +W +A H+L GP GG
Sbjct: 477 ERIVDCI-----IRLPVKWETTTQFKATHIL----------DFGP---------GG--AS 510
Query: 346 RFEELTSEKLGKAGLG 361
LT K G G
Sbjct: 511 GLGVLTHRN--KDGTG 524
Score = 41.6 bits (97), Expect = 8e-04
Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 78/255 (30%)
Query: 4 GMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAK--NIANTLK---TSL---- 54
GM G MD L + + + N A +H +I + + +L
Sbjct: 1630 GM--G--MD--------LYKTSKAAQDVWNRA-DNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 55 -GPKG------LDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDG 107
G KG M+ + D + + I K +++ + S+ +
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTE--KIFK--EINEHSTSYTFR---SEKGLL-SA 1728
Query: 108 T--TGVVVLAGALLEQA--EHLLDKGI---------HPIRIADGFELAAQCAVKHLETIA 154
T T + +E+A E L KG+ H + G E AA ++ A
Sbjct: 1729 TQFTQPALTL---MEKAAFEDLKSKGLIPADATFAGHSL----G-EYAALASL------A 1774
Query: 155 DSFPVNPDNLEPLIK-------TAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVN 207
D +E L++ T + + + + M IA+N A + +
Sbjct: 1775 DVMS-----IESLVEVVFYRGMTMQVAVPRDELGRSNYGM--IAINPGRVAASFSQEALQ 1827
Query: 208 FELIKVEGKVGGKLE 222
+ + +V + G +E
Sbjct: 1828 YVVERVGKRTGWLVE 1842
Score = 34.6 bits (79), Expect = 0.12
Identities = 42/256 (16%), Positives = 75/256 (29%), Gaps = 92/256 (35%)
Query: 406 VREISFGTTKDHM-----LVIEEC--ENSKAVTIFIRG-GNKMIIEE----AKRSIHDAL 453
+++ + +H I + N +TI G K I E +I D
Sbjct: 1642 AQDV-WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 454 CVVRNL---VTEN--RVVYGGGAAEVSC------AIAVAAEADKISSIEQYAFRAFADAL 502
+ + E+ + +S A+ + +A AF L
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA---------AFED----L 1747
Query: 503 ES---IPL-------------ALAENSGLSPIETLTE-VKSR--QVKEVNP--------- 534
+S IP ALA + + IE+L E V R ++ P
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 535 ---ALGIDCMLNGTNDMKQQNVIEALRSKK-------------QQILLS---------TQ 569
A+ + + Q V+E + + QQ + + T
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 570 LVKM--ILKIDDIRSP 583
++ + KID I
Sbjct: 1868 VLNFIKLQKIDIIELQ 1883
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.075
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 15/41 (36%)
Query: 483 EADKI----SSIEQYAFRAFADALESIPLALAENSGLSPIE 519
E + +S++ YA D S P ALA + +E
Sbjct: 18 EKQALKKLQASLKLYA----DD---SAP-ALAIK---ATME 47
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ;
1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A*
1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A*
2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A*
3d6h_A* 2hbz_A* 2hbr_A* ...
Length = 178
Score = 28.0 bits (62), Expect = 6.7
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 256 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEAN 313
P P ++ N+ + S+E+ + + K + + ++DK T L IC FD
Sbjct: 2 PAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPR 59
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase;
non-canonical TIM-barrel, prenyltransferase, archaeal
lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus
fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Length = 234
Score = 27.8 bits (61), Expect = 9.2
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 8/145 (5%)
Query: 366 YNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECE 425
+ HA + + I+ E + E ++ T + E
Sbjct: 94 WITGKHAQWVRMHYENLQKFTEIIE-SEFIQIEGYIVLNPDSAVARVTKALCNIDKELAA 152
Query: 426 NSKAVTIFIRGGNKMIIEEAKRSIHDALC-VVRNLVTENRVVYGGGAAEVSCAIAVAAEA 484
+ V + + IE + + L V+ ++ + R+ YGGG A + A
Sbjct: 153 SYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYA 212
Query: 485 DKI---SSIEQYAFRAFADALESIP 506
D I + I + A LE++P
Sbjct: 213 DTIIVGNVIYEKGIDA---FLETLP 234
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.378
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,667,969
Number of extensions: 630050
Number of successful extensions: 1744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1621
Number of HSP's successfully gapped: 77
Length of query: 622
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 523
Effective length of database: 3,937,614
Effective search space: 2059372122
Effective search space used: 2059372122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)