RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14623
(622 letters)
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 140 bits (354), Expect = 1e-39
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 46/214 (21%)
Query: 223 DTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKY 282
D+ +++GV+I+KD +HP+M + +++ ++ +L E + +++ ++++ ED+ + +
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60
Query: 283 EQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 342
E+E + + + + I + G D A H L++ + A+R V D IA G R
Sbjct: 61 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 120
Query: 343 IVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGK 402
IV R EEL + +G
Sbjct: 121 IVSRPEELREDDVGTG-------------------------------------------- 136
Query: 403 AGLVREISFGTTKDHMLVIEECENSKAVTIFIRG 436
AGL+ G ++ I +C++ KA TI +RG
Sbjct: 137 AGLLEIKKIG--DEYFTFITDCKDPKACTILLRG 168
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 132 bits (332), Expect = 1e-35
Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 3/233 (1%)
Query: 29 RIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE 88
R G +A +++I AAK IA+ ++T+LGPKG+DKM+V S GD+ ++NDGATILK MDV+H
Sbjct: 1 REQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHP 60
Query: 89 IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVK 148
AK++V++S++QD +GDGTT VVL+G LL+QAE LLD+G+HP I++G+ LA A K
Sbjct: 61 TAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARK 120
Query: 149 HLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNF 208
++ IA+ + + + + E A+ + +
Sbjct: 121 IIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGI 180
Query: 209 ELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPK---ELRDVKLAILTCPFE 258
+ I K+ E + GV +D + K + VK L E
Sbjct: 181 DPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVE 233
Score = 90.6 bits (224), Expect = 5e-21
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Query: 427 SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADK 486
+A T+ +G + +I R + + + + E ++GGGA E A+ +A A+
Sbjct: 92 KQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANS 151
Query: 487 ISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTN 546
+ EQ A AFA ALE IP LAEN+G+ PI TL ++K+ K G+D NG
Sbjct: 152 VGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISV-GVDLDNNGVG 210
Query: 547 DMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
DMK + V++ LR K + + ++ MIL+IDD+
Sbjct: 211 DMKAKGVVDPLRVKTHALESAVEVATMILRIDDV 244
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 128 bits (323), Expect = 2e-35
Identities = 47/133 (35%), Positives = 74/133 (55%)
Query: 228 KGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKF 287
+GVVIDK+ HP+MPK + + K+A++ E + +T +++ S + + E++
Sbjct: 1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKML 60
Query: 288 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRF 347
MVD + TGA + Q G DD A H L + + AVR V D+E +A TG +IV
Sbjct: 61 KDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNV 120
Query: 348 EELTSEKLGKAGL 360
++LT E LG A +
Sbjct: 121 KDLTPEDLGYAEV 133
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 127 bits (321), Expect = 3e-35
Identities = 43/134 (32%), Positives = 74/134 (55%)
Query: 227 VKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEK 286
+ G+VIDK+ H +MP +++ K+A++ E + + + + + ++ E
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 287 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPR 346
F MV+K+K +GA + +CQ G DD A H L ++ + AVR V D+E +A TG +IV
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 347 FEELTSEKLGKAGL 360
++LT LG+A
Sbjct: 121 LDDLTPSVLGEAET 134
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 127 bits (320), Expect = 5e-35
Identities = 47/132 (35%), Positives = 73/132 (55%)
Query: 229 GVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFA 288
G+++DK+ HP MP ++D K+A+L P E +P+ NL ++ ++ E+
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLR 60
Query: 289 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFE 348
MVDK+K+ GA + I Q G DD A H L + + AVR V D++ +A TG IV +
Sbjct: 61 EMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTID 120
Query: 349 ELTSEKLGKAGL 360
E++S LG A
Sbjct: 121 EISSSDLGTAER 132
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 119 bits (300), Expect = 3e-31
Identities = 67/202 (33%), Positives = 117/202 (57%), Gaps = 1/202 (0%)
Query: 34 DAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLM 93
DA+K +I AA I+N++++SLGP+G+DKM+V S GD+ +TNDG TILK MDV+H AK+M
Sbjct: 2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMM 61
Query: 94 VQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETI 153
V++S++QD +GDGTT V++AG LL+QA+ L+++ +HP I++G+ +A++ A + ++ I
Sbjct: 62 VEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEI 121
Query: 154 ADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMA-EIAVNAVMAVADLEKRDVNFELIK 212
+ + A +Q+A E +A+ + + + I
Sbjct: 122 STKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPID 181
Query: 213 VEGKVGGKLEDTMLVKGVVIDK 234
+ K+ + G+ +
Sbjct: 182 ILLKLRAEHAKGNKTYGINVFT 203
Score = 92.8 bits (230), Expect = 8e-22
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 438 NKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRA 497
+I E + + +A V+ + T+ GGGA A + + A KI +Q A
Sbjct: 100 PTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEK 159
Query: 498 FADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEAL 557
FADA+E IP ALAEN+GL PI+ L ++++ K GI+ DM + VIE +
Sbjct: 160 FADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTY-GINVFTGEIEDMVKNGVIEPI 218
Query: 558 RSKKQQILLSTQLVKMILKIDDI 580
R KQ I +T+ MIL+IDD+
Sbjct: 219 RVGKQAIESATEAAIMILRIDDV 241
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 114 bits (287), Expect = 2e-29
Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 10/200 (5%)
Query: 19 IILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGAT 78
+IL + +R +G DA + +I+AA+ IA T++T+LGPKG+DKM+V S GD+ VTND AT
Sbjct: 2 VILP--EGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCAT 59
Query: 79 ILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADG 138
IL +D+ H AK+MV+++++QD E GDGTT VV+AG LL +AE LLD+ IHP I G
Sbjct: 60 ILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKG 119
Query: 139 FELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAV 198
+ LAA+ A + L+ IA + P L ++ + + A+
Sbjct: 120 YALAAEKAQEILDEIAI------RAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFA 173
Query: 199 ADLEKRDVNFELIKVEGKVG 218
L+ + L + G
Sbjct: 174 DALK--IIPKTLAENAGLDT 191
Score = 65.2 bits (158), Expect = 2e-12
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 2/173 (1%)
Query: 408 EISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVY 467
+ + T +++ E + +I + + A ++ + V+
Sbjct: 83 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIR-AVLP 141
Query: 468 GGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSR 527
GGA E+ AI + A ++ E A FADAL+ IP LAEN+GL +E L +V S
Sbjct: 142 AGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISE 201
Query: 528 QVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
K +GID DM ++ +IE LR KKQ I +++ MIL+IDD+
Sbjct: 202 H-KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDV 253
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 99.5 bits (247), Expect = 4e-24
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 11/219 (5%)
Query: 32 GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE--- 88
GNDA + +A+ +K +LGPKG + ++ S G T+T DG ++ + ++++ +
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 89 -IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
A+++ +++ +D GDGTT VLA A++ + + G++P+ + G + A AV
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 127
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAV----ADLEK 203
+ L+ S V LI+ A + N ++A+ A+ A
Sbjct: 128 EELKA--LSVGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCG 185
Query: 204 RDVNFELIKVEGKVGGKLEDTMLVK-GVVIDKDFSHPQM 241
+ + V+G G + + G +ID P
Sbjct: 186 EEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTK 224
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 87.6 bits (217), Expect = 1e-21
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 159 VNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGK 216
V+PD+ E L+K A T++ K +A++AV AV VA+ + K V+ + IK E K
Sbjct: 1 VDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKK 60
Query: 217 VGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFE 258
G +E++ LVK V I + +V+ A+
Sbjct: 61 AGEGVEESELVKAVTILI---RGGTEHVIDEVERALEDAVKV 99
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 84.5 bits (209), Expect = 2e-20
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 162 DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGG 219
D L+K A T+L SK + ++AEI+ AV +VA+L K V+F+ I+V K GG
Sbjct: 3 DEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGG 62
Query: 220 KLEDTMLVKGVVI-----DKDFSHPQMPKELRDVKLAILTCPFE 258
++DT L+ V + + +M + + D L ++ E
Sbjct: 63 AIDDTQLINKAVSILVRGETEHVVDEMERSITD-SLHVVASALE 105
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 88.3 bits (218), Expect = 3e-20
Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 6/172 (3%)
Query: 32 GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHE--- 88
+DA + +A+ +K +LGPKG + ++ S G +T DG ++ K +++ +
Sbjct: 8 NSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFEN 67
Query: 89 -IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
A+++ +++ +DE GDGTT VLA A++ + + G++P+ + G ++A V
Sbjct: 68 MGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVV 127
Query: 148 KHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVA 199
+ +++ + + L++ A G N I A+ A
Sbjct: 128 EAIKSA--ARGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPM 177
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 78.0 bits (192), Expect = 3e-18
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 165 EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGGKLE 222
L K A+T L K + +A++ V AV AVA++ K V+ IKV+ K GG +
Sbjct: 4 ATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVN 63
Query: 223 DTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTK 265
DT + V I + +V+ A+ K
Sbjct: 64 DTQFISAVSILI---RGGTDHVVSEVERALNDAIRVVAITKED 103
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 73.8 bits (180), Expect = 3e-15
Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 28/223 (12%)
Query: 32 GNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD----H 87
A ++ +AN +K +LGP+G + ++ G T+T DG T+ K ++++ +
Sbjct: 7 DEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLEN 66
Query: 88 EIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAV 147
A+L+ +++ +D GDGTT VLA A++ + + G +P+ + G E A + AV
Sbjct: 67 IGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAV 126
Query: 148 KHLETIADSFPVNPDNLEPL------------IKTAMTTLGSKIINK-CHRQMAEIAVNA 194
+ ++ +A + P L G+KI+ + +IA NA
Sbjct: 127 EKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENA 186
Query: 195 ------VMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVV 231
++ E ++ + G+ M+ G+V
Sbjct: 187 GYEGSVIVQQILAETKNPRYGFNAATGEFV-----DMVEAGIV 224
Score = 36.0 bits (82), Expect = 0.008
Identities = 25/173 (14%), Positives = 63/173 (36%), Gaps = 3/173 (1%)
Query: 408 EISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVY 467
+++ T ++ + + + ++++ A+ ++ L +V
Sbjct: 81 DVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVP 140
Query: 468 GGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSR 527
GGG + AV K+ E + ALE +AEN+G + ++
Sbjct: 141 GGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQI--- 197
Query: 528 QVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
+ NP G + DM + +++ + + + + + +IL + +
Sbjct: 198 LAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAV 250
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 59.8 bits (144), Expect = 4e-11
Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 6/150 (4%)
Query: 90 AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKH 149
A+L+ ++++ DD GDGTT VLA AL+ + + G +P+ + G E A + +
Sbjct: 8 AELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTET 67
Query: 150 LETIADSFPVNPDNLE---PLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDV 206
L A L P + + E + + + LE V
Sbjct: 68 LLKGAKIVAGGGVTLLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVV 127
Query: 207 NFELIKVEGKVGGKLEDTM---LVKGVVID 233
++ + G + + L+ V D
Sbjct: 128 AEKVRNLPAGHGLNAQTGVYEDLLAAGVAD 157
Score = 33.6 bits (76), Expect = 0.038
Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 28/190 (14%)
Query: 398 EKLGKAGLVREISFGTTKD------------HMLVIEECENSKAVTIFIRGGNKMIIEEA 445
EK+G A LV+E++ T LV E N A G N + +
Sbjct: 4 EKIG-AELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAA------GANPLGL--K 54
Query: 446 KRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESI 505
+ V L+ ++V GGG + A + + K+ E ALE+
Sbjct: 55 RGIEKAVEKVTETLLKGAKIVAGGGVTLLQAAPTL--DELKLEGDEATGANIVKVALEAP 112
Query: 506 PLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQIL 565
+A NSGL P V + +V+ + G++ D+ V + ++ + +
Sbjct: 113 LKQIAFNSGLEPG-----VVAEKVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQ 167
Query: 566 LSTQLVKMIL 575
+ + + L
Sbjct: 168 NAASIAGLFL 177
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 29.8 bits (67), Expect = 0.43
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 57 KGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAG 116
+ + + + N I+ + + I K E+ VV L G
Sbjct: 62 QAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKAC--------RELELKVPLVVRLEG 113
Query: 117 ALLEQAEHLLDKGIHPIRIADGFELAAQCAVK 148
+ +A+++L PI A E AA+ AV
Sbjct: 114 TNVHEAQNILTNSGLPITSAVDLEDAAKKAVA 145
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 27.9 bits (62), Expect = 2.2
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Query: 57 KGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAG 116
+ ++ + N I++ + I + E+G VV L G
Sbjct: 62 EAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAV--------AEVGVNVPVVVRLEG 113
Query: 117 ALLEQAEHLLDKGIHPIRIADGFELAAQCAVK 148
E L I A G AAQ V
Sbjct: 114 NNAELGAKKLADSGLNIIAAKGLTDAAQQVVA 145
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 27.3 bits (60), Expect = 2.8
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 257 FEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 299
E R TK D+ +E ++EL E+E+ + + + A
Sbjct: 60 LERARATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAA 102
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 28.5 bits (63), Expect = 3.0
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 326 WVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTG 385
W+GG + GR+ P + + K G++FW+ + +A ++
Sbjct: 469 WMGGV---SEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISL 525
Query: 386 GRIV 389
RI+
Sbjct: 526 PRII 529
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 27.0 bits (59), Expect = 7.0
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 451 DALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALA 510
D+L V + +V I + I++ + + +A
Sbjct: 152 DSLVEVHSREDLEKVFSVIRP----KIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVA 207
Query: 511 ENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRS 559
E SG+ L +++ ++ +L GT+ MK +N L
Sbjct: 208 E-SGIKDPRELKDLRG----------KVNAVLVGTSIMKAENPRRFLEE 245
>d1s6la2 d.357.1.2 (A:81-212) Alkylmercury lyase MerB {Escherichia
coli [TaxId: 562]}
Length = 132
Score = 26.0 bits (57), Expect = 7.3
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 122 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFP 158
++H +G+ + + + F L + L+T++ P
Sbjct: 96 SKHQGLEGLAIVSVHEAFGLGQEFNRHLLQTMSSRTP 132
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 176
Score = 26.2 bits (58), Expect = 10.0
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 380 IAIVTGGRIVP-----RFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAV 430
IAI+TGG+++ + E +T + LG+A V KD+ +++ +
Sbjct: 102 IAILTGGQVISEDLGMKLENVTIDMLGRAKKVS-----INKDNTTIVDGAGEKAEI 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.378
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,272,578
Number of extensions: 109326
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 37
Length of query: 622
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 531
Effective length of database: 1,158,166
Effective search space: 614986146
Effective search space used: 614986146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)