BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14628
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 361
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSSAIS 60
+ VE+L+KFN RR+LKGAVL A+SS K+N+ D + D ED +S ++
Sbjct: 306 ETVEQLRKFNARRKLKGAVLAAVSSHKFNSFYGDPPEELPDFSEDPTSSGLLA 358
>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
Length = 351
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGED 52
+ VE+L+KFN RR+LKGAVL A+SS K+N+ D + D ED
Sbjct: 304 ETVEQLRKFNARRKLKGAVLAAVSSHKFNSFYGDPPEELPDFSED 348
>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
Length = 351
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGED 52
+ VE+L+KFN RR+LKGAVL A+SS K+N+ D + D ED
Sbjct: 304 ETVEQLRKFNARRKLKGAVLAAVSSHKFNSFYGDPPEELPDFSED 348
>pdb|1RSO|B Chain B, Hetero-Tetrameric L27 (Lin-2, Lin-7) Domain Complexes As
Organization Platforms Of Supra-Molecular Assemblies
pdb|1RSO|D Chain D, Hetero-Tetrameric L27 (Lin-2, Lin-7) Domain Complexes As
Organization Platforms Of Supra-Molecular Assemblies
Length = 56
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 58 AISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSK 105
A+S +L+SL++I L + +D ++S+ +D+ LH LL+LYDKI++K
Sbjct: 8 AVSQVLDSLEEIHALTDSSEKDLDFLHSVFQDQHLHTLLDLYDKINTK 55
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
D V+ LKKFN RR+LKGA+L +
Sbjct: 301 QDTVDCLKKFNARRKLKGAILTTM 324
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ VE L+KFN RR+LKGA+L +
Sbjct: 305 ETVECLRKFNARRKLKGAILTTM 327
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 278 ETVDCLKKFNARRKLKGAILTTM 300
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 ETVDCLKKFNARRKLKGAILTVM 307
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 278 ETVDCLKKFNARRKLKGAILTTM 300
>pdb|1CDM|B Chain B, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
pdb|1CM1|B Chain B, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|B Chain B, Motions Of Calmodulin-four-conformer Refinement
Length = 25
Score = 30.8 bits (68), Expect = 0.32, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 13 LKKFNVRRRLKGAVLNAI 30
LKKFN RR+LKGA+L +
Sbjct: 1 LKKFNARRKLKGAILTTM 18
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 30.8 bits (68), Expect = 0.40, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 21/134 (15%)
Query: 41 DAQDHFSDCGE------DELTSSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHI 94
D ++ S CG E+T AI LESL D++ E L + + + +ED+ +
Sbjct: 642 DLKNLLSGCGAVKRAEFHEVTRRAILEALESLRDVD---ENLVKAQVVRR--IEDRWIGF 696
Query: 95 LL--ELYDKISSKVISPNRTPPSDV--------VTRCRDALDIIRDFERSVSPTDVELDL 144
+L +L+++ +++ +S R + +R R + I+RDF+ + + E DL
Sbjct: 697 VLSQKLWERFNNRNLSAGRAQTLVLGWIIDRFQESRERRKIAIVRDFDLVLEHDEEEFDL 756
Query: 145 SGDFEELKQILTSP 158
+ E ++ L +P
Sbjct: 757 TIKLVEEREELRTP 770
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 30.4 bits (67), Expect = 0.40, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 21/134 (15%)
Query: 41 DAQDHFSDCGE------DELTSSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHI 94
D ++ S CG E+T AI LESL D++ E L + + + +ED+ +
Sbjct: 642 DLKNLLSGCGAVKRAEFHEVTRRAILEALESLRDVD---ENLVKAQVVRR--IEDRWIGF 696
Query: 95 LL--ELYDKISSKVISPNRTPPSDV--------VTRCRDALDIIRDFERSVSPTDVELDL 144
+L +L+++ +++ +S R + +R R + I+RDF+ + + E DL
Sbjct: 697 VLSQKLWERFNNRNLSAGRAQTLVLGWIIDRFQESRERRKIAIVRDFDLVLEHDEEEFDL 756
Query: 145 SGDFEELKQILTSP 158
+ E ++ L +P
Sbjct: 757 TIKLVEEREELRTP 770
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 10 VEELKKFNVRRRLKGA 25
VE LKKFN RR+LKGA
Sbjct: 280 VECLKKFNARRKLKGA 295
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 29.6 bits (65), Expect = 0.80, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 29.6 bits (65), Expect = 0.80, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1 MSTFISHDCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSSAI 59
++ F + +EE KK N + L ++ +NA +L ++F+ CGEDE+ S I
Sbjct: 273 LTNFTEEEAIEECKKLNTKSXLPKIIVTG-----YNALNL--INYFT-CGEDEVRSWTI 323
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 8 DCVEELKKFNVRRRLKGA 25
+ V+ LKKFN RR+LKGA
Sbjct: 296 ETVDCLKKFNARRKLKGA 313
>pdb|1ZL8|B Chain B, Nmr Structure Of L27 Heterodimer From C. Elegans Lin-7 And
H. Sapiens Lin-2 Scaffold Proteins
Length = 54
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 11/46 (23%)
Query: 115 SDVVTRCRDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHF 160
SD V R ++ L+ E S P + D +ELK+ILT PHF
Sbjct: 1 SDAVQRAKEVLE-----EISCYPEN------NDAKELKRILTQPHF 35
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 119 TRCRDALDIIRDF---ERSVSPTDVELDLSGDFEELKQILTS 157
R +DALD ++DF R+ ++E DL+ FEE Q L S
Sbjct: 328 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 369
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 119 TRCRDALDIIRDF---ERSVSPTDVELDLSGDFEELKQILTS 157
R +DALD ++DF R+ ++E DL+ FEE Q L S
Sbjct: 320 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 361
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 119 TRCRDALDIIRDF---ERSVSPTDVELDLSGDFEELKQILTS 157
R +DALD ++DF R+ ++E DL+ FEE Q L S
Sbjct: 329 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 370
>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
Length = 602
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 14 KKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSSAISMILESLDDIECLQ 73
K+F R + + L+A + W + +D++ F E E ++ + +LE D + L
Sbjct: 83 KRFAGLRGVLESWLDAYAGEDWESRSVDSKRLFQHVPEMEDSARGLMQLLED-DAVRILD 141
Query: 74 EQLYEDKTM 82
E+L E++ +
Sbjct: 142 EKLTEEQKV 150
>pdb|2OZP|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Ttha1904) From Thermus Thermophilus
Length = 345
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 71 CLQEQLYEDKTMMNSLLEDKQLHIL-LELYDKISSKVISPNRTPPSDVVTRCRDALDIIR 129
L E K + + + +H + L + + K + P + P+D++ R
Sbjct: 24 ALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEKLEPADILVLALPHGVFAR 83
Query: 130 DFERSVSPTDVELDLSGDF 148
+F+R + V +DLS DF
Sbjct: 84 EFDRYSALAPVLVDLSADF 102
>pdb|2HC5|A Chain A, Solution Nmr Structure Of Protein Yvyc From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr482
Length = 117
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 83 MNSLLEDKQLHILLELYDKISSKVIS 108
MN LLE Q+H+ EL+DK++ +
Sbjct: 47 MNKLLEPSQVHLKFELHDKLNEYYVK 72
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 80 KTMMNSLLEDKQLHILLELYDKISSKVISPNRTPP 114
K MMN LL DK +I E + V +PN+T P
Sbjct: 257 KLMMN-LLRDKSRNIQFEAFHVFKVFVANPNKTQP 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,507,537
Number of Sequences: 62578
Number of extensions: 164299
Number of successful extensions: 486
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 44
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)