BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14628
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q62915|CSKP_RAT Peripheral plasma membrane protein CASK OS=Rattus norvegicus
GN=Cask PE=1 SV=1
Length = 909
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSS------AISM 61
+ VE+L+KFN RR+LKGAVL A+SS K+N+ D + D ED +S A+S
Sbjct: 290 ETVEQLRKFNARRKLKGAVLAAVSSHKFNSFYGDPPEELPDFSEDPTSSGLLAAERAVSQ 349
Query: 62 ILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPPSDVVTRC 121
+L+SL++I L + +D ++S+ +D+ LH LL+LYDKI++K R PPSD V R
Sbjct: 350 VLDSLEEIHALTDCSEKDLDFLHSVFQDQHLHTLLDLYDKINTKSSPQIRNPPSDAVQRA 409
Query: 122 RDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHF 160
++ L+ E S P + D +ELK+ILT PHF
Sbjct: 410 KEVLE-----EISCYPEN------NDAKELKRILTQPHF 437
>sp|O70589|CSKP_MOUSE Peripheral plasma membrane protein CASK OS=Mus musculus GN=Cask
PE=1 SV=2
Length = 926
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSS------AISM 61
+ VE+L+KFN RR+LKGAVL A+SS K+N+ D + D ED +S A+S
Sbjct: 290 ETVEQLRKFNARRKLKGAVLAAVSSHKFNSFYGDPPEELPDFSEDPTSSGLLAAERAVSQ 349
Query: 62 ILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPPSDVVTRC 121
+L+SL++I L + +D ++S+ +D+ LH LL+LYDKI++K R PPSD V R
Sbjct: 350 VLDSLEEIHALTDCSEKDLDFLHSVFQDQHLHTLLDLYDKINTKSSPQIRNPPSDAVQRA 409
Query: 122 RDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHF 160
++ L+ E S P + D +ELK+ILT PHF
Sbjct: 410 KEVLE-----EISCYPEN------NDAKELKRILTQPHF 437
>sp|O14936|CSKP_HUMAN Peripheral plasma membrane protein CASK OS=Homo sapiens GN=CASK
PE=1 SV=3
Length = 926
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSS------AISM 61
+ VE+L+KFN RR+LKGAVL A+SS K+N+ D + D ED +S A+S
Sbjct: 290 ETVEQLRKFNARRKLKGAVLAAVSSHKFNSFYGDPPEELPDFSEDPTSSGLLAAERAVSQ 349
Query: 62 ILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPPSDVVTRC 121
+L+SL++I L + +D ++S+ +D+ LH LL+LYDKI++K R PPSD V R
Sbjct: 350 VLDSLEEIHALTDCSEKDLDFLHSVFQDQHLHTLLDLYDKINTKSSPQIRNPPSDAVQRA 409
Query: 122 RDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHF 160
++ L+ E S P + D +ELK+ILT PHF
Sbjct: 410 KEVLE-----EISCYPEN------NDAKELKRILTQPHF 437
>sp|Q24210|CSKP_DROME Peripheral plasma membrane protein CASK OS=Drosophila melanogaster
GN=CASK PE=1 SV=4
Length = 898
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 22/165 (13%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAISSPKWN---ATDLD-----AQDHFSDCGEDELTSSAI 59
D VEELK++N RR+LKGAV + ATD D A D ++D +E A+
Sbjct: 291 DTVEELKRYNARRKLKGAVQAIAGGTNMDPLYATDADMPITGATDEWAD---EEAGIEAV 347
Query: 60 SMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPN-RTPPSDVV 118
IL+ LDDI LQ+ + D ++ +L D +LH L+L+D+I++ V++ N R P ++ V
Sbjct: 348 QRILDCLDDIYSLQDA-HVDADVLRDMLRDNRLHQFLQLFDRIAATVVTSNGRAPAAEAV 406
Query: 119 TRCRDALDIIRDFERSVSPTDVELDLSGDF--EELKQILTSPHFK 161
RCRD L+ +S T L G + EEL ++L +PH +
Sbjct: 407 GRCRDVLE-------QLSSTSGGNSLGGKYAKEELMRLLAAPHMQ 444
>sp|P54936|LIN2_CAEEL Protein lin-2 OS=Caenorhabditis elegans GN=lin-2 PE=1 SV=1
Length = 961
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 36/179 (20%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAISSPKWNATD----------LDAQDHFSDC---GEDE 53
+D +++++++N R+LK VL+A++S +++ T +D DC GE
Sbjct: 294 NDVIDQMRRYNESRKLKSNVLSAVNSGRFDETTPRQDTPQTAFVDGSSPGGDCCHRGESS 353
Query: 54 LTSSA----------ISMILESLDDIECL--QEQLYEDKTMMNSLLEDKQLHILLELYDK 101
+A +L SLD I L T + +D + LL LYDK
Sbjct: 354 SNDAAEPPADKDLSGAYKVLGSLDAINSLLDPNSYKPGSTTFQKIHDDGSVRNLLRLYDK 413
Query: 102 ISSKVISPNRTPPSDVVTRCRDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHF 160
I + P VVT +D + +++ D L S + EL+Q+L SPH
Sbjct: 414 IKALPCEP-------VVTE----VDTSTLRKETLNQIDGLLGPSPEALELRQLLNSPHL 461
>sp|P63357|MKL_MYCTU Probable ribonucleotide transport ATP-binding protein mkl
OS=Mycobacterium tuberculosis GN=mkl PE=3 SV=1
Length = 359
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 60 SMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKIS 103
S+I++ D IEC ++LYE +T+ L +D L + LYD +
Sbjct: 83 SIIIDGTDIIECSAKELYEIRTLFGVLFQDGALFGSMNLYDNTA 126
>sp|P63358|MKL_MYCBO Probable ribonucleotide transport ATP-binding protein mkl
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=mkl PE=3 SV=1
Length = 359
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 60 SMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKIS 103
S+I++ D IEC ++LYE +T+ L +D L + LYD +
Sbjct: 83 SIIIDGTDIIECSAKELYEIRTLFGVLFQDGALFGSMNLYDNTA 126
>sp|P30769|MKL_MYCLE Probable ribonucleotide transport ATP-binding protein mkl
OS=Mycobacterium leprae (strain TN) GN=mkl PE=3 SV=2
Length = 347
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 60 SMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKIS 103
S++++ D IEC ++LYE +T+ L +D L + LYD +
Sbjct: 71 SILIDGTDIIECSAKELYEIRTLFGVLFQDGALFGSMNLYDNTA 114
>sp|Q3MHJ9|KCC2B_BOVIN Calcium/calmodulin-dependent protein kinase type II subunit beta
OS=Bos taurus GN=CAMK2B PE=2 SV=1
Length = 542
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ VE LKKFN RR+LKGA+L +
Sbjct: 285 QETVECLKKFNARRKLKGAILTTM 308
>sp|P08413|KCC2B_RAT Calcium/calmodulin-dependent protein kinase type II subunit beta
OS=Rattus norvegicus GN=Camk2b PE=1 SV=1
Length = 542
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ VE LKKFN RR+LKGA+L +
Sbjct: 285 QETVECLKKFNARRKLKGAILTTM 308
>sp|Q13554|KCC2B_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit beta
OS=Homo sapiens GN=CAMK2B PE=1 SV=3
Length = 666
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ VE LKKFN RR+LKGA+L +
Sbjct: 285 QETVECLKKFNARRKLKGAILTTM 308
>sp|P28652|KCC2B_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit beta
OS=Mus musculus GN=Camk2b PE=1 SV=2
Length = 542
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ VE LKKFN RR+LKGA+L +
Sbjct: 285 QETVECLKKFNARRKLKGAILTTM 308
>sp|Q6DGS3|KC2D2_DANRE Calcium/calmodulin-dependent protein kinase type II delta 2 chain
OS=Danio rerio GN=camk2d2 PE=2 SV=2
Length = 554
Score = 33.1 bits (74), Expect = 0.84, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ VE LKKFN RR+LKGA+L +
Sbjct: 284 QETVECLKKFNARRKLKGAILTTL 307
>sp|Q923T9|KCC2G_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Mus musculus GN=Camk2g PE=1 SV=1
Length = 529
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSSAISMILESL 66
+ VE L+KFN RR+LKGA+L + + + + SD G + SS+ ++
Sbjct: 285 QETVECLRKFNARRKLKGAILTTMLVSRNFSAAKSLLNKKSDGGVKKRKSSSSVHLMPQS 344
Query: 67 DDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPP-SDVVTRCRDAL 125
++ L E + ++ + Q ++ D I S N T D+ R ++ +
Sbjct: 345 NNKNSLVSPAQEPAPLQTAM--EPQTTVVHNATDGIKGSTESCNTTTEDEDLKVRKQEII 402
Query: 126 DIIRDFERSVSPTDVELDLSGDFEELKQI 154
I +++ +GDFE +I
Sbjct: 403 KITEQLIEAIN--------NGDFEAYTKI 423
>sp|Q6DEH3|KC2D1_DANRE Calcium/calmodulin-dependent protein kinase type II delta 1 chain
OS=Danio rerio GN=camk2d1 PE=2 SV=2
Length = 491
Score = 32.7 bits (73), Expect = 0.95, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ VE LKKFN RR+LKGA+L +
Sbjct: 284 QETVECLKKFNARRKLKGAILTTM 307
>sp|Q13555|KCC2G_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Homo sapiens GN=CAMK2G PE=1 SV=3
Length = 558
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ VE L+KFN RR+LKGA+L +
Sbjct: 286 ETVECLRKFNARRKLKGAILTTM 308
>sp|O29238|RGYR_ARCFU Reverse gyrase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16
/ DSM 4304 / JCM 9628 / NBRC 100126) GN=rgy PE=1 SV=1
Length = 1054
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 21/134 (15%)
Query: 41 DAQDHFSDCGE------DELTSSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHI 94
D ++ S CG E+T AI LESL D++ E L + + + +ED+ +
Sbjct: 642 DLKNLLSGCGAVKRAEFHEVTRRAILEALESLRDVD---ENLVKAQVVRR--IEDRWIGF 696
Query: 95 LL--ELYDKISSKVISPNR--TPPSDVV------TRCRDALDIIRDFERSVSPTDVELDL 144
+L +L+++ +++ +S R TP + +R R + I+RDF+ + + E DL
Sbjct: 697 VLSQKLWERFNNRNLSAGRAQTPVLGWIIDRFQESRERRKIAIVRDFDLVLEHDEEEFDL 756
Query: 145 SGDFEELKQILTSP 158
+ E ++ L +P
Sbjct: 757 TIKLVEEREELRTP 770
>sp|P11730|KCC2G_RAT Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Rattus norvegicus GN=Camk2g PE=2 SV=1
Length = 527
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ VE L+KFN RR+LKGA+L +
Sbjct: 285 QETVECLRKFNARRKLKGAILTTM 308
>sp|Q95266|KCC2D_PIG Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Sus scrofa GN=CAMK2D PE=2 SV=1
Length = 499
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 286 ETVDCLKKFNARRKLKGAILTTM 308
>sp|Q2HJF7|KCC2D_BOVIN Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Bos taurus GN=CAMK2D PE=2 SV=1
Length = 488
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 286 ETVDCLKKFNARRKLKGAILTTM 308
>sp|Q5ZKI0|KCC2D_CHICK Calcium/calmodulin-dependent protein kinase type II delta chain
OS=Gallus gallus GN=CAMK2D PE=2 SV=1
Length = 479
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 286 ETVDCLKKFNARRKLKGAILTTM 308
>sp|Q5RCC4|KCC2A_PONAB Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Pongo abelii GN=CAMK2A PE=2 SV=2
Length = 478
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 ETVDCLKKFNARRKLKGAILTTM 307
>sp|Q9UQM7|KCC2A_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Homo sapiens GN=CAMK2A PE=1 SV=2
Length = 478
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 ETVDCLKKFNARRKLKGAILTTM 307
>sp|P11275|KCC2A_RAT Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Rattus norvegicus GN=Camk2a PE=1 SV=1
Length = 478
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 ETVDCLKKFNARRKLKGAILTTM 307
>sp|P11798|KCC2A_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Mus musculus GN=Camk2a PE=1 SV=2
Length = 478
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 ETVDCLKKFNARRKLKGAILTTM 307
>sp|Q9DG02|KCC2D_XENLA Calcium/calmodulin-dependent protein kinase type II delta chain
OS=Xenopus laevis GN=camk2d PE=2 SV=1
Length = 475
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 8 DCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 ETVDCLKKFNARRKLKGAILTTM 307
>sp|P15791|KCC2D_RAT Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Rattus norvegicus GN=Camk2d PE=1 SV=1
Length = 533
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 QETVDCLKKFNARRKLKGAILTTM 308
>sp|O77708|KCC2D_RABIT Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Oryctolagus cuniculus GN=CAMK2D PE=2 SV=2
Length = 533
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 QETVDCLKKFNARRKLKGAILTTM 308
>sp|Q6PHZ2|KCC2D_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Mus musculus GN=Camk2d PE=1 SV=1
Length = 499
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 QETVDCLKKFNARRKLKGAILTTM 308
>sp|Q13557|KCC2D_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Homo sapiens GN=CAMK2D PE=1 SV=3
Length = 499
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 QETVDCLKKFNARRKLKGAILTTM 308
>sp|Q00168|KCC2A_DROME Calcium/calmodulin-dependent protein kinase type II alpha chain
OS=Drosophila melanogaster GN=CaMKII PE=1 SV=1
Length = 530
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 7 HDCVEELKKFNVRRRLKGAVLNAI 30
+ V+ LKKFN RR+LKGA+L +
Sbjct: 285 QETVDCLKKFNARRKLKGAILTTM 308
>sp|Q96JB8|MPP4_HUMAN MAGUK p55 subfamily member 4 OS=Homo sapiens GN=MPP4 PE=1 SV=2
Length = 637
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 17/83 (20%)
Query: 82 MMNSLLEDKQLHILLELYD---KISSKVISPNRTPPSDVVTRCRDALDIIRDFERSVSPT 138
++ LL L LL++YD + K + P TP + V++ + ++++R+ +PT
Sbjct: 52 LLYDLLHSPWLQALLKIYDCLQEFKEKKLVPA-TPHAQVLSY--EVVELLRE-----TPT 103
Query: 139 DVELDLSGDFEELKQILTSPHFK 161
E+ +EL+Q+L +PHFK
Sbjct: 104 SPEI------QELRQMLQAPHFK 120
>sp|Q6ZW31|SYDE1_HUMAN Rho GTPase-activating protein SYDE1 OS=Homo sapiens GN=SYDE1 PE=1
SV=1
Length = 735
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 71 CLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVI-------SPNRTPPSDVVTRCRD 123
CL E LY D ++ +L+D + L + KV+ PNR PP+ T R
Sbjct: 459 CLSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGT--RG 516
Query: 124 ALDIIRDFERS 134
L + D ER+
Sbjct: 517 LLSCLPDVERA 527
>sp|Q99JE6|PLCB3_RAT 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3
OS=Rattus norvegicus GN=Plcb3 PE=1 SV=2
Length = 1234
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 49 CGEDELTSSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVIS 108
G D + ++ ++ + D ++ E+L+ K MN L ++ H+L + Y K+ +V
Sbjct: 108 AGPDPVNTTFLNFMAVQDDTVKVWSEELF--KLAMNILAQNAPEHVLRKAYTKLKLQVNQ 165
Query: 109 PNRTPPSDVV-------TRCRDALDIIRDFER--SVSPTDVELDLSGDFEELKQILTSP 158
R P +++ R AL +F R S+ P + L++ F L ++L P
Sbjct: 166 DGRIPVKNILKMFSADKKRVETALICGLNFNRSESIRPDEFSLEIFERF--LNKLLLRP 222
>sp|O18211|MO25M_CAEEL MO25-like protein 2 OS=Caenorhabditis elegans GN=mop-25.2 PE=3 SV=1
Length = 338
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 80 KTMMNSLLEDKQLHILLELYDKISSKVISPNRTPP-SDVVTRCRDAL 125
KT+M LL DK+ +I E + V +PN+ P +D++TR RD L
Sbjct: 260 KTVM-ELLRDKRRNIQYEAFHVFKIFVANPNKPRPITDILTRNRDKL 305
>sp|A7MQQ8|RPOC_CROS8 DNA-directed RNA polymerase subunit beta' OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=rpoC PE=3 SV=1
Length = 1407
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEAEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|Q6DAM9|RPOC_ERWCT DNA-directed RNA polymerase subunit beta' OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=rpoC PE=3 SV=1
Length = 1407
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+++D + EC EQL E+ T NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKNMDLEQEC--EQLREELTETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|Q32AG0|RPOC_SHIDS DNA-directed RNA polymerase subunit beta' OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|A8FW15|BAMC_SHESH Outer membrane protein assembly factor BamC OS=Shewanella sediminis
(strain HAW-EB3) GN=bamC PE=3 SV=1
Length = 373
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 53 ELTSSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDK 101
E + +I +++ES+D L+++LY T++N+ L + +++L E YDK
Sbjct: 92 EESGDSIKIVVESIDKDVDLKQELY---TVLNNYLASQSINVLSEDYDK 137
>sp|Q0SY12|RPOC_SHIF8 DNA-directed RNA polymerase subunit beta' OS=Shigella flexneri
serotype 5b (strain 8401) GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|B2TWH4|RPOC_SHIB3 DNA-directed RNA polymerase subunit beta' OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rpoC PE=3
SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|Q1R5V4|RPOC_ECOUT DNA-directed RNA polymerase subunit beta' OS=Escherichia coli
(strain UTI89 / UPEC) GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|Q8FB83|RPOC_ECOL6 DNA-directed RNA polymerase subunit beta' OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|A1AIG0|RPOC_ECOK1 DNA-directed RNA polymerase subunit beta' OS=Escherichia coli O1:K1
/ APEC GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|Q3YUZ6|RPOC_SHISS DNA-directed RNA polymerase subunit beta' OS=Shigella sonnei
(strain Ss046) GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|P0A8T9|RPOC_SHIFL DNA-directed RNA polymerase subunit beta' OS=Shigella flexneri
GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|Q31U09|RPOC_SHIBS DNA-directed RNA polymerase subunit beta' OS=Shigella boydii
serotype 4 (strain Sb227) GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|B1LNU0|RPOC_ECOSM DNA-directed RNA polymerase subunit beta' OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|P0A8T7|RPOC_ECOLI DNA-directed RNA polymerase subunit beta' OS=Escherichia coli
(strain K12) GN=rpoC PE=1 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
>sp|B1IUQ9|RPOC_ECOLC DNA-directed RNA polymerase subunit beta' OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rpoC PE=3 SV=1
Length = 1407
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 40 LDAQDHFSDCGEDELTSSAISMILESLD-DIECLQEQLYEDKTMMNSLLEDKQLHILLEL 98
LDA + F D + ++ + AI +L+S+D + EC EQL E+ NS + K+L ++L
Sbjct: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC--EQLREELNETNSETKRKKLTKRIKL 223
Query: 99 YD 100
+
Sbjct: 224 LE 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,896,687
Number of Sequences: 539616
Number of extensions: 2197423
Number of successful extensions: 6506
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 6455
Number of HSP's gapped (non-prelim): 89
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)