Query psy14628
Match_columns 161
No_of_seqs 130 out of 172
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 16:34:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0033|consensus 99.5 3.2E-15 6.9E-20 128.0 4.0 68 2-69 278-352 (355)
2 PF02828 L27: L27 domain; Int 98.9 1.2E-09 2.5E-14 72.5 3.9 55 58-112 1-55 (56)
3 KOG0609|consensus 98.9 1.3E-09 2.8E-14 100.0 5.3 88 63-161 3-90 (542)
4 smart00569 L27 domain in recep 98.6 5.9E-08 1.3E-12 62.8 4.2 53 58-111 1-53 (55)
5 PF02828 L27: L27 domain; Int 97.0 0.00028 6.1E-09 46.5 1.2 36 117-161 1-36 (56)
6 smart00569 L27 domain in recep 95.9 0.0051 1.1E-07 39.3 1.8 35 117-161 1-35 (55)
7 PF09060 L27_N: L27_N; InterP 84.0 1.9 4.2E-05 28.3 3.6 44 59-102 2-47 (49)
8 PF09045 L27_2: L27_2; InterP 40.6 61 0.0013 22.0 4.0 29 77-105 25-53 (58)
9 PRK11627 hypothetical protein; 38.6 7.2 0.00016 31.9 -0.9 17 83-99 174-190 (192)
10 PF10906 DUF2697: Protein of u 36.4 49 0.0011 23.1 3.1 28 83-110 5-33 (68)
11 COG3160 Rsd Regulator of sigma 21.3 2.3E+02 0.005 22.8 4.8 41 88-128 19-65 (162)
12 KOG2857|consensus 20.5 55 0.0012 26.2 1.2 14 148-161 87-100 (157)
No 1
>KOG0033|consensus
Probab=99.54 E-value=3.2e-15 Score=127.96 Aligned_cols=68 Identities=32% Similarity=0.391 Sum_probs=58.2
Q ss_pred cccchHHHHHHHhhhhhhhhhhhHHHHhhcCCCCCCCCC-CcCCCCCccCccccchH------HHHHHHhhhhhh
Q psy14628 2 STFISHDCVEELKKFNVRRRLKGAVLNAISSPKWNATDL-DAQDHFSDCGEDELTSS------AISMILESLDDI 69 (161)
Q Consensus 2 ~~~~~~~tv~~l~~fn~rrklk~~~~~~~~~~~~~~~~~-~~~~~~~d~~dd~~~~~------av~qVLdsL~dI 69 (161)
+++||++||++|||||+|||||||||++|++.++.+++. +.++.++++.++..+.+ |.+++++.++.+
T Consensus 278 s~~H~~dtvd~lrkfNarRKLKgavLtav~s~r~~s~~~kD~p~tl~~~~e~~~s~G~daa~ra~s~~~~~~e~~ 352 (355)
T KOG0033|consen 278 SAIHRQDTVDCLKKFNARRKLKGAILTTVIATRNLSTTPKDGPQTLGNLIEGIHSIGEDAACRAYSKLTQFLDRN 352 (355)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHHHHHHHHHhccccccCCCCCchhhhhhhcCCcccchhHHHHHHHHHHHhhccc
Confidence 689999999999999999999999999999999999998 55666677777776652 788888888754
No 2
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=98.92 E-value=1.2e-09 Score=72.47 Aligned_cols=55 Identities=31% Similarity=0.522 Sum_probs=47.6
Q ss_pred HHHHHHhhhhhhhhhhhhcccchHHHHHhhchhhHHHHHHHHhhhcccccCCCCC
Q psy14628 58 AISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRT 112 (161)
Q Consensus 58 av~qVLdsL~dI~~l~~a~~~D~~fL~~ll~d~~L~sLLkvydrL~~~~~~~~~~ 112 (161)
||+++++.|++|+...+.+..+..+|+.+|++|++++|+++||+|.++...++.|
T Consensus 1 av~~~~e~L~~L~~~~~~~~~~~~eL~~lL~~p~~~aLl~~hD~va~~~~~~~~p 55 (56)
T PF02828_consen 1 AVQRVLELLEELQSLSSASQEDAQELQQLLQSPHFQALLEVHDKVAQKVYEPPSP 55 (56)
T ss_dssp HHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTT----
T ss_pred ChHHHHHHHHHHHhccCCChHHHHHHHHHHcCHHHHHHHHHHHHHHhhcCCCCCC
Confidence 6889999999999988886689999999999999999999999999998777654
No 3
>KOG0609|consensus
Probab=98.91 E-value=1.3e-09 Score=100.02 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=74.5
Q ss_pred HhhhhhhhhhhhhcccchHHHHHhhchhhHHHHHHHHhhhcccccCCCCCCCCcHHHHHHHHHHHHhhccCCCCCccccc
Q psy14628 63 LESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPPSDVVTRCRDALDIIRDFERSVSPTDVEL 142 (161)
Q Consensus 63 LdsL~dI~~l~~a~~~D~~fL~~ll~d~~L~sLLkvydrL~~~~~~~~~~~~~~a~~l~~evle~L~~~~~s~~~~~~~~ 142 (161)
|+++-.+...+.....+.+||+++|++|++++|+|+||+|+..+..+++++++++..++.++.+.++..+.+ .+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~k~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~--- 76 (542)
T KOG0609|consen 3 LDNLVELFSSTGYERGDLIFLRSILESPIVQSLAKIYDKLEELKLESVVPAISNAELLAEEVLEELQLAPVS---SE--- 76 (542)
T ss_pred cccccccccchhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhccccCCCCccchHHHHHHHHHHhhhccCCC---hh---
Confidence 344433333344334568999999999999999999999999999999999999999999999999888877 67
Q ss_pred cccccHHHHHHhhhCCCCC
Q psy14628 143 DLSGDFEELKQILTSPHFK 161 (161)
Q Consensus 143 ~~~~~~~EL~~LL~~PHfq 161 (161)
+.||.+||+.|||+
T Consensus 77 -----~~eL~~iL~~ph~~ 90 (542)
T KOG0609|consen 77 -----VQELRQLLNTPHLQ 90 (542)
T ss_pred -----HHHHHHHhcchhHh
Confidence 99999999999986
No 4
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=98.60 E-value=5.9e-08 Score=62.76 Aligned_cols=53 Identities=30% Similarity=0.496 Sum_probs=46.5
Q ss_pred HHHHHHhhhhhhhhhhhhcccchHHHHHhhchhhHHHHHHHHhhhcccccCCCC
Q psy14628 58 AISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNR 111 (161)
Q Consensus 58 av~qVLdsL~dI~~l~~a~~~D~~fL~~ll~d~~L~sLLkvydrL~~~~~~~~~ 111 (161)
+++++++.|++|+...+.+ .|..||+++|++|++++|+++||++..+...+..
T Consensus 1 ~~~~~~~~L~~l~~~~~~~-~~~~~L~~ll~~~~~~all~~hd~v~~~~~~~~~ 53 (55)
T smart00569 1 AVQRLLELLEELQSLLSPS-EDLQELRRLLQSPHLQALLKIHDKVAETVYDPPL 53 (55)
T ss_pred ChHHHHHHHHHHHhccCCC-ccHHHHHHHHcCHHHHHHHHHHHHHHHHhccCCC
Confidence 4788999999999887764 6999999999999999999999999988775544
No 5
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=97.02 E-value=0.00028 Score=46.53 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCccccccccccHHHHHHhhhCCCCC
Q psy14628 117 VVTRCRDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHFK 161 (161)
Q Consensus 117 a~~l~~evle~L~~~~~s~~~~~~~~~~~~~~~EL~~LL~~PHfq 161 (161)
|++++.|+++.|......+ ..+ +.||.+||++||||
T Consensus 1 av~~~~e~L~~L~~~~~~~-~~~--------~~eL~~lL~~p~~~ 36 (56)
T PF02828_consen 1 AVQRVLELLEELQSLSSAS-QED--------AQELQQLLQSPHFQ 36 (56)
T ss_dssp HHHHHHHHHHHHHHHTSST-HHH--------HHHHHHHHHSHHHH
T ss_pred ChHHHHHHHHHHHhccCCC-hHH--------HHHHHHHHcCHHHH
Confidence 6899999999998876541 134 99999999999985
No 6
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=95.89 E-value=0.0051 Score=39.33 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCccccccccccHHHHHHhhhCCCCC
Q psy14628 117 VVTRCRDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHFK 161 (161)
Q Consensus 117 a~~l~~evle~L~~~~~s~~~~~~~~~~~~~~~EL~~LL~~PHfq 161 (161)
+++++.++++.|....... .+ ..+|.+||++|||+
T Consensus 1 ~~~~~~~~L~~l~~~~~~~--~~--------~~~L~~ll~~~~~~ 35 (55)
T smart00569 1 AVQRLLELLEELQSLLSPS--ED--------LQELRRLLQSPHLQ 35 (55)
T ss_pred ChHHHHHHHHHHHhccCCC--cc--------HHHHHHHHcCHHHH
Confidence 4688999999998765432 45 99999999999985
No 7
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=84.02 E-value=1.9 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.488 Sum_probs=33.9
Q ss_pred HHHHHhhhhhhh-hhhhh-cccchHHHHHhhchhhHHHHHHHHhhh
Q psy14628 59 ISMILESLDDIE-CLQEQ-LYEDKTMMNSLLEDKQLHILLELYDKI 102 (161)
Q Consensus 59 v~qVLdsL~dI~-~l~~a-~~~D~~fL~~ll~d~~L~sLLkvydrL 102 (161)
+..++.||..++ ++.+. ..+|..++-.++....++.-++||.-+
T Consensus 2 leell~sLk~iqh~L~D~qSQ~Dv~lllqLl~~~dFq~A~~IhnaV 47 (49)
T PF09060_consen 2 LEELLSSLKHIQHCLNDSQSQQDVELLLQLLQNSDFQNAFKIHNAV 47 (49)
T ss_dssp HHHHHHHHHHHHCCH-SHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHhhHHhHHHHHHHHhhHhHHHHHHHHHHh
Confidence 456777886554 67774 478999999999999999999999754
No 8
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=40.64 E-value=61 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=24.4
Q ss_pred ccchHHHHHhhchhhHHHHHHHHhhhccc
Q psy14628 77 YEDKTMMNSLLEDKQLHILLELYDKISSK 105 (161)
Q Consensus 77 ~~D~~fL~~ll~d~~L~sLLkvydrL~~~ 105 (161)
.+.+..|+++|++|-++.+|.+...|...
T Consensus 25 ~e~L~~l~~~LqSPLF~~iL~LQqSi~qL 53 (58)
T PF09045_consen 25 SEKLSLLKDTLQSPLFNQILTLQQSIKQL 53 (58)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 57899999999999999999988777654
No 9
>PRK11627 hypothetical protein; Provisional
Probab=38.61 E-value=7.2 Score=31.93 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=13.3
Q ss_pred HHHhhchhhHHHHHHHH
Q psy14628 83 MNSLLEDKQLHILLELY 99 (161)
Q Consensus 83 L~~ll~d~~L~sLLkvy 99 (161)
+..|+.||.|+..++=+
T Consensus 174 l~~i~~D~el~~fi~q~ 190 (192)
T PRK11627 174 IADMAQDTSISEFIKQN 190 (192)
T ss_pred HHHHHcCHHHHHHHHHh
Confidence 66788999999887643
No 10
>PF10906 DUF2697: Protein of unknown function (DUF2697); InterPro: IPR020301 This entry contains proteins with no known function.
Probab=36.42 E-value=49 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=23.5
Q ss_pred HHHhhchhhHHHHH-HHHhhhcccccCCC
Q psy14628 83 MNSLLEDKQLHILL-ELYDKISSKVISPN 110 (161)
Q Consensus 83 L~~ll~d~~L~sLL-kvydrL~~~~~~~~ 110 (161)
...+|+||..|..+ +||-||+..+..+.
T Consensus 5 y~kLl~SpgFhrfVR~Ih~kVN~I~~~~~ 33 (68)
T PF10906_consen 5 YRKLLDSPGFHRFVRRIHAKVNGIKYGPN 33 (68)
T ss_pred HHHHHcChhHHHHHHHHHHHHhCCCCCCC
Confidence 45789999999998 79999999876554
No 11
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=21.33 E-value=2.3e+02 Score=22.78 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=24.5
Q ss_pred chhhHHH---HHHHHhhhcccccCCCCCCCCcHHHH---HHHHHHHH
Q psy14628 88 EDKQLHI---LLELYDKISSKVISPNRTPPSDVVTR---CRDALDII 128 (161)
Q Consensus 88 ~d~~L~s---LLkvydrL~~~~~~~~~~~~~~a~~l---~~evle~L 128 (161)
=|.|||. |+-.|..+...+++.....+-++..| |+.+++.+
T Consensus 19 ID~WLh~Rk~llvayc~l~gikp~ke~~~plnakaL~~FCq~LvDYl 65 (162)
T COG3160 19 IDRWLHVRKHLLVAYCNLVGIKPGKESYMPLNAKALDDFCQSLVDYL 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccccCCCCHHHHHHHHHHHHHHH
Confidence 5778875 78899999888774433222354443 34444444
No 12
>KOG2857|consensus
Probab=20.46 E-value=55 Score=26.19 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.9
Q ss_pred HHHHHHhhhCCCCC
Q psy14628 148 FEELKQILTSPHFK 161 (161)
Q Consensus 148 ~~EL~~LL~~PHfq 161 (161)
..||+.||..||+|
T Consensus 87 sseLrsll~dp~Lr 100 (157)
T KOG2857|consen 87 SSELRSLLEDPHLR 100 (157)
T ss_pred hHHHHHHHhCHHHH
Confidence 66899999999975
Done!