Query psy14628
Match_columns 161
No_of_seqs 130 out of 172
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 16:35:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14628.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14628hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rsob_ a.194.1.1 (B:) Periphe 99.5 1E-14 7.3E-19 94.8 4.5 50 56-105 6-55 (56)
2 d1y74b1 a.194.1.1 (B:83-132) P 98.4 2.2E-08 1.6E-12 63.3 0.5 34 117-161 1-34 (50)
3 d1y74b1 a.194.1.1 (B:83-132) P 92.9 0.033 2.4E-06 34.2 2.8 28 78-105 19-46 (50)
4 d1vf6c_ a.194.1.1 (C:) Maguk p 87.3 0.29 2.1E-05 29.5 3.4 44 59-102 5-50 (51)
5 d1zl8a1 a.194.1.1 (A:4-53) Lin 66.2 3.6 0.00026 24.6 3.7 44 59-102 6-49 (50)
6 d1y74a1 a.194.1.1 (A:17-73) Li 63.9 4.8 0.00035 24.6 4.1 48 58-105 6-53 (57)
7 d1vf6a_ a.194.1.1 (A:) Associa 39.3 16 0.0011 22.3 3.5 29 76-104 20-48 (58)
8 d1or7c_ a.180.1.1 (C:) N-termi 15.6 1.1E+02 0.0081 18.0 4.6 39 69-107 6-44 (66)
9 d1w96a1 b.84.2.1 (A:451-566) A 15.4 44 0.0032 22.2 2.5 36 57-93 68-103 (116)
10 d1ulza1 b.84.2.1 (A:329-451) B 14.6 53 0.0039 22.1 2.8 36 57-94 69-104 (123)
No 1
>d1rsob_ a.194.1.1 (B:) Peripheral plasma membrane protein cask {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.49 E-value=1e-14 Score=94.78 Aligned_cols=50 Identities=40% Similarity=0.727 Sum_probs=47.8
Q ss_pred hHHHHHHHhhhhhhhhhhhhcccchHHHHHhhchhhHHHHHHHHhhhccc
Q psy14628 56 SSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSK 105 (161)
Q Consensus 56 ~~av~qVLdsL~dI~~l~~a~~~D~~fL~~ll~d~~L~sLLkvydrL~~~ 105 (161)
..||++|||||+||+++|++...|.+||+++|+|.+||+||++||||+++
T Consensus 6 ~~AV~~iLDSLddI~~Lqd~~~~d~d~L~~~~~D~~LhaLLelyDrI~t~ 55 (56)
T d1rsob_ 6 ERAVSQVLDSLEEIHALTDSSEKDLDFLHSVFQDQHLHTLLDLYDKINTK 55 (56)
T ss_dssp THHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHcccccCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 47999999999999999999889999999999999999999999999875
No 2
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.39 E-value=2.2e-08 Score=63.32 Aligned_cols=34 Identities=41% Similarity=0.696 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCccccccccccHHHHHHhhhCCCCC
Q psy14628 117 VVTRCRDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHFK 161 (161)
Q Consensus 117 a~~l~~evle~L~~~~~s~~~~~~~~~~~~~~~EL~~LL~~PHfq 161 (161)
|+++++||++.|++.+.+ ++ ++||.+||++||||
T Consensus 1 Avq~A~eVle~L~~~~~~---~e--------~~EL~~lL~~PH~~ 34 (50)
T d1y74b1 1 AVQRAKEVLEEISCYPEN---ND--------AKELKRILTQPHFM 34 (50)
T ss_dssp CHHHHHHHHHHHHTCSSC---HH--------HHHHHHHHHSHHHH
T ss_pred CcHHHHHHHHHHhcccCC---hH--------HHHHHHHHhCHHHH
Confidence 589999999999988777 67 99999999999996
No 3
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.93 E-value=0.033 Score=34.22 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.3
Q ss_pred cchHHHHHhhchhhHHHHHHHHhhhccc
Q psy14628 78 EDKTMMNSLLEDKQLHILLELYDKISSK 105 (161)
Q Consensus 78 ~D~~fL~~ll~d~~L~sLLkvydrL~~~ 105 (161)
.|..=|..+|..|.+++||.+||-+...
T Consensus 19 ~e~~EL~~lL~~PH~~aLL~aHD~VA~k 46 (50)
T d1y74b1 19 NDAKELKRILTQPHFMALLQTHDVVAHE 46 (50)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 4677799999999999999999988654
No 4
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=87.30 E-value=0.29 Score=29.54 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=36.4
Q ss_pred HHHHHhhhhhhh-hhhhhc-ccchHHHHHhhchhhHHHHHHHHhhh
Q psy14628 59 ISMILESLDDIE-CLQEQL-YEDKTMMNSLLEDKQLHILLELYDKI 102 (161)
Q Consensus 59 v~qVLdsL~dI~-~l~~a~-~~D~~fL~~ll~d~~L~sLLkvydrL 102 (161)
+..++.||.+|+ ++.+.. ++|..++-.+.+.+.++.-+|||.-+
T Consensus 5 ~edl~~slK~iqh~LvDsQSQeDi~l~lqLvqn~DFQnAfkIHNav 50 (51)
T d1vf6c_ 5 VEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAV 50 (51)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 567888887776 666653 78999999999999999999999754
No 5
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=66.17 E-value=3.6 Score=24.59 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=33.6
Q ss_pred HHHHHhhhhhhhhhhhhcccchHHHHHhhchhhHHHHHHHHhhh
Q psy14628 59 ISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKI 102 (161)
Q Consensus 59 v~qVLdsL~dI~~l~~a~~~D~~fL~~ll~d~~L~sLLkvydrL 102 (161)
|.+.++.|+-++...+-+...+.-|+.+|+|.-+.+.=++|+.+
T Consensus 6 v~RaieLle~Lq~sgevp~~KL~aLqkVLqSdF~~avREVYe~v 49 (50)
T d1zl8a1 6 VQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVREVYETV 49 (50)
T ss_dssp HHHHHHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666666666555554556788899999999999999999875
No 6
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=63.92 E-value=4.8 Score=24.61 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=36.8
Q ss_pred HHHHHHhhhhhhhhhhhhcccchHHHHHhhchhhHHHHHHHHhhhccc
Q psy14628 58 AISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSK 105 (161)
Q Consensus 58 av~qVLdsL~dI~~l~~a~~~D~~fL~~ll~d~~L~sLLkvydrL~~~ 105 (161)
-|.+.++.|+-++...+-+...+.-|+.+|+|.-+.+.=++|+.+-++
T Consensus 6 Dv~RaieLle~LQ~~gevp~~KL~aLqkVLqSdF~~avREVYehvyeT 53 (57)
T d1y74a1 6 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDT 53 (57)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666667666665555556788899999999999999999987654
No 7
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.31 E-value=16 Score=22.26 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=24.4
Q ss_pred cccchHHHHHhhchhhHHHHHHHHhhhcc
Q psy14628 76 LYEDKTMMNSLLEDKQLHILLELYDKISS 104 (161)
Q Consensus 76 ~~~D~~fL~~ll~d~~L~sLLkvydrL~~ 104 (161)
+.+++..|+++|+||-++.+|.+..-|+.
T Consensus 20 ~~ekL~~lk~~LqSPLF~qiL~lQ~Siqq 48 (58)
T d1vf6a_ 20 QNEKLSMFYETLKSPLFNQILTLQQSIKQ 48 (58)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 36789999999999999999987766654
No 8
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=15.65 E-value=1.1e+02 Score=18.01 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=29.4
Q ss_pred hhhhhhhcccchHHHHHhhchhhHHHHHHHHhhhccccc
Q psy14628 69 IECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVI 107 (161)
Q Consensus 69 I~~l~~a~~~D~~fL~~ll~d~~L~sLLkvydrL~~~~~ 107 (161)
|.++.|+.-.+..++..+..++.++.--.-|.-|...-.
T Consensus 6 lSAL~DgE~~~~el~~~l~~d~e~~~~W~~Yhli~d~lr 44 (66)
T d1or7c_ 6 LSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR 44 (66)
T ss_dssp HHHHHTTSCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 445555544577789999999999999888888876643
No 9
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.43 E-value=44 Score=22.21 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhhhhhhhhhcccchHHHHHhhchhhHH
Q psy14628 57 SAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLH 93 (161)
Q Consensus 57 ~av~qVLdsL~dI~~l~~a~~~D~~fL~~ll~d~~L~ 93 (161)
.|+.++...|++..... .-.....||..+|.++.++
T Consensus 68 ~Ai~rl~~aL~e~~I~G-~v~TN~~fL~~iL~~~~F~ 103 (116)
T d1w96a1 68 ASRKHMVVALKELSIRG-DFRTTVEYLIKLLETEDFE 103 (116)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHhceEec-cccccHHHHHHHhCChhhc
Confidence 59999999998765432 1256899999999999876
No 10
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]}
Probab=14.60 E-value=53 Score=22.10 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhhhhhhhhhcccchHHHHHhhchhhHHH
Q psy14628 57 SAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHI 94 (161)
Q Consensus 57 ~av~qVLdsL~dI~~l~~a~~~D~~fL~~ll~d~~L~s 94 (161)
.|+.++...|++.... +-...+.||+.+|.++.+++
T Consensus 69 ~Ai~rl~~aL~e~~I~--Gv~TNi~fl~~il~~~~F~~ 104 (123)
T d1ulza1 69 EAVERMRAALETYEIT--GVKTTIPLLINIMKEKDFKA 104 (123)
T ss_dssp HHHHHHHHHHHTCEEC--SSCCSHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccC--CcCccHHHHHHHhCChhhcc
Confidence 5899999999876532 34679999999999999874
Done!