RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14628
(161 letters)
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7
homolog C; tripartite complex, L27 tetramer, cell
junction; 2.95A {Homo sapiens} PDB: 1rso_A
Length = 254
Score = 56.5 bits (135), Expect = 2e-10
Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 55 TSSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPP 114
+ + + +L +L ED T + + +K LH L+++++K+
Sbjct: 74 SDTGLYELLAALPAQLQPHVDSQEDLTFLWDMFGEKSLHSLVKIHEKLHYYEKQSPVPIL 133
Query: 115 SDVVTRCRDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHFK 161
D + +++ + + EL ++L+ P+ K
Sbjct: 134 HGAAALADDLAEELQNKPLN-----------SEIRELLKLLSKPNVK 169
>1rso_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain,
scaffold protein, protein assembly, cell polarity; NMR
{Rattus norvegicus} SCOP: a.194.1.1
Length = 56
Score = 48.5 bits (115), Expect = 8e-09
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 55 TSSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSK 105
A+S +L+SL++I L + +D ++S+ +D+ LH LL+LYDKI++K
Sbjct: 5 AERAVSQVLDSLEEIHALTDSSEKDLDFLHSVFQDQHLHTLLDLYDKINTK 55
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-06
Identities = 26/189 (13%), Positives = 59/189 (31%), Gaps = 45/189 (23%)
Query: 11 EELKKFNVRRRL-----KGAVLNAISS----------PKWNATDLDAQDHFS---DCGED 52
+ FN+ ++ V + +S+ T + + DC
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 53 ELTSSA-------ISMILESLDDIEC-----LQEQLYEDKTMMNSLLEDKQLHILLELYD 100
+L +S+I ES+ D + T++ S L + +++D
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 101 ---------KISSKVIS-----PNRTPPSDVVTRCRDALDIIRDF-ERSVSPTDVELDLS 145
I + ++S ++ VV + + + E ++S + L+L
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 146 GDFEELKQI 154
E +
Sbjct: 437 VKLENEYAL 445
Score = 39.5 bits (91), Expect = 2e-04
Identities = 33/212 (15%), Positives = 61/212 (28%), Gaps = 70/212 (33%)
Query: 1 MSTFIS-----HDCVEELKKFNVRR-----RLKGAVLNAISSP-----------KW---- 35
+I ++ + K+NV R +L+ A+L + K
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 36 -NATDLDAQDHFSD---------CGEDELT-------SSAISMILESLDDIECLQEQLYE 78
Q C E I S D +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 79 D-KTMMNSLLEDKQ----LHILLELYDK-------ISSKVISPNRTPPSDVVTRCRDALD 126
+ + LL+ K L +LL + + +S K++ + TR +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---------LTTRFKQ--- 276
Query: 127 IIRDFERSVSPTDVEL-DLSGDF--EELKQIL 155
+ DF + + T + L S +E+K +L
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Score = 33.7 bits (76), Expect = 0.021
Identities = 27/189 (14%), Positives = 52/189 (27%), Gaps = 48/189 (25%)
Query: 9 CVEELKKFNVR----RRLKGAVLNAISSPKWNATD-LDAQDHFSDCG---ED-------- 52
E ++ + + L I N + + + F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 53 -----ELTSSAISMILESLDDIECLQEQLYEDKTMMNSLL--------EDKQLH-ILLEL 98
++ S + +++ L +++Q E + S+ + LH +++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 99 YDKISSKVISPNRTPPSDVVTRCRDA---------LDIIRDFERSVSPTDVELDLSGDFE 149
Y+ P D++ D L I ER V LD F
Sbjct: 453 YNI-------PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFL 503
Query: 150 ELKQILTSP 158
E K S
Sbjct: 504 EQKIRHDST 512
Score = 32.5 bits (73), Expect = 0.051
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 28/119 (23%)
Query: 39 DLDAQDHFSDCGEDELTSSAISMILESLDDIE-------CL---QEQLYED--------- 79
+ D +D D + L+ I I+ S D + L QE++ +
Sbjct: 32 NFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 80 -KTMMNSL-LEDKQLHILLELYDKISSKVISPNRTPPSDVVTRC------RDALDIIRD 130
K +M+ + E +Q ++ +Y + ++ + N+ V+R R AL +R
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Score = 30.2 bits (67), Expect = 0.35
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 23/106 (21%)
Query: 48 DCGEDELTSSAISMILES--LDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSK 105
+ GE + I + E +D+ +C + +D M S+L ++ D I
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDC---KDVQD--MPKSILSKEE-------IDHI--- 54
Query: 106 VISPNRTPPSDVVTRCRDALDIIRDFERSVSPTDVELDLSGDFEEL 151
++S + V+ + + + VE L +++ L
Sbjct: 55 IMSKDA------VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Score = 29.1 bits (64), Expect = 0.80
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 120 RCRDALDIIRD-FERSVSPTDVELDLSGDF--EELKQILTSPH 159
+ +D L + D F + DV+ EE+ I+ S
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B;
L27 domain, cell polarization, cell adhesion; 2.05A {Mus
musculus} PDB: 1y76_A 1y76_B 1y74_A
Length = 265
Score = 43.8 bits (102), Expect = 5e-06
Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 17/147 (11%)
Query: 19 RRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSSAISMILESLDDI--ECLQEQL 76
+ L +L S K L + + I + SL I + Q
Sbjct: 43 KSPLFNQILTLQQSIKQLKGQLS-HIPLEVLFQGPVKILEIEDLFSSLKHIQHTLVDSQS 101
Query: 77 YEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPP--SDVVTRCRDALDIIRDFERS 134
ED +++ L+++K ++++ I+ + + P S+ ++ +++
Sbjct: 102 QEDISLLLQLVQNKDFQNAFKIHNAITVHMNKASPPFPLISNAQDLAQEVQTVLKPVHHK 161
Query: 135 VSPTDVELDLSGDFEELKQILTSPHFK 161
+ +EL +L +PH +
Sbjct: 162 ------------EGQELTALLNTPHIQ 176
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 43.1 bits (102), Expect = 1e-05
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 10 VEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDE 53
VE+L+KFN RR+LKGAVL A+SS K+N+ D + D ED
Sbjct: 306 VEQLRKFNARRKLKGAVLAAVSSHKFNSFYGDPPEELPDFSEDP 349
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain,
scaffold protein, protein assembly, cell polarity,
transport protein; NMR {Mus musculus} SCOP: a.194.1.1
PDB: 1zl8_B
Length = 50
Score = 32.2 bits (73), Expect = 0.007
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 118 VTRCRDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHFK 161
V R ++ L+ I + + D +ELK+ILT PHF
Sbjct: 2 VQRAKEVLEEISCYPEN-----------NDAKELKRILTQPHFM 34
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 34.2 bits (79), Expect = 0.013
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 2 STFISHDCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSSAISM 61
S D V+ LKKFN RR+LKGA+L + + + N ++L T S
Sbjct: 296 SAIHRQDTVDCLKKFNARRKLKGAILTTMIATR-NLSNLGRNLLNKKEQGPPSTIKESSE 354
Query: 62 ILESLDD 68
+++DD
Sbjct: 355 SSQTIDD 361
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 33.8 bits (78), Expect = 0.018
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 5 ISHDCVEELKKFNVRRRLKGAVLNAISSPKWNATDLDAQDHFSDCGEDELTSSAISMILE 64
+ V+ LKKFN RR+LKGA+L + + + + ++ + +++ +
Sbjct: 282 HRQETVDCLKKFNARRKLKGAILTVMLATRNFSVRKQEIIKVTEQLIEAISNGDFESYTK 341
Query: 65 SLD-DIECLQEQ 75
D + + +
Sbjct: 342 MCDPGMTAFEPE 353
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain;
metal binding protein, ATP-binding, calmodulin-
binding, nucleotide-binding; 1.46A {Homo sapiens}
Length = 26
Score = 30.6 bits (68), Expect = 0.022
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 16 FNVRRRLKGAVLNAI 30
FN RR+LKGA+L +
Sbjct: 3 FNARRKLKGAILTTM 17
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural
genomics, joint center for struc genomics, JCSG,
protein structure initiative; HET: PGE; 1.95A {Homo
sapiens} PDB: 3b4d_A 3b4m_A
Length = 89
Score = 29.0 bits (66), Expect = 0.20
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 35 WNATDLDAQDHFSDCGE 51
+ AT + + HF CG
Sbjct: 16 YGATAEELEAHFHGCGS 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.22
Identities = 28/220 (12%), Positives = 69/220 (31%), Gaps = 65/220 (29%)
Query: 2 STFISH--DCVEE-------------LKKFNVRRRLKGAVLNAI--SSPKWNATDLDAQD 44
F+ + VE L +F L+G ++A+ + N T L
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 45 HF-------SDCGEDELTSSAISMILESLDD---------------IECLQE--QLYED- 79
+ + S + ++ + + +E LY+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 80 KTMMNSLLE--DKQLHILLEL---YDKISSKVI-------SPNRTPPSDVVTRCRDALDI 127
++ L++ + L L+ +K+ ++ + +P+ TP D + + +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 128 I--------RDFERS--VSPTDVELDLSGDFEELKQILTS 157
I + +P ++ L G + ++T+
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Score = 30.4 bits (68), Expect = 0.29
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 34 KWNATDLDAQDHFSDCGED--ELTSSAISMILESL-DDIECLQEQLYEDKTMMNSLLEDK 90
+NA D+ + + G D L+ S I E + D I ++ + + T
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGS----ISERIVDCI--IRLPVKWETTTQFKA---- 498
Query: 91 QLHIL 95
HIL
Sbjct: 499 -THIL 502
Score = 29.6 bits (66), Expect = 0.45
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 28/95 (29%)
Query: 1 MSTF----ISHDCVEELKK-FNVRRRLKGAVLNAISSPKWN--ATDLDAQDHFSDCG--- 50
++ F + D EEL+ + L G ++ + T LDA+ F+ G
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNI 215
Query: 51 ------------EDELTSSAISMILESLDDIECLQ 73
+D L S IS L I +Q
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPL-----IGVIQ 245
Score = 29.2 bits (65), Expect = 0.58
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 26/127 (20%)
Query: 54 LTSSAISMILESLDDI-----ECLQEQLYEDKT------M-------MNSLLEDKQLHIL 95
L S A M +ESL ++ +Q + D+ M + + + L +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 96 LELYDKISSKVISP---NRTPPSDVV----TRCRDALDIIRDFERSVSPTDVELDLSGDF 148
+E K + ++ N V R D + + +F + +EL S
Sbjct: 1830 VERVGKRTGWLVEIVNYN-VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 149 EELKQIL 155
EE++ L
Sbjct: 1889 EEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.39
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 21/44 (47%)
Query: 84 NSLLEDKQLHILLELYDKISSKVISPNRTPPSDVVTRCRDALDI 127
+L K+L L+LY + + P AL I
Sbjct: 20 QAL---KKLQASLKLY--------ADDSAP----------ALAI 42
Score = 28.4 bits (62), Expect = 0.67
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 11 EELKKFNVRRRLKGAVLNAI-SSPKW--NAT 38
+ LKK LK L A S+P AT
Sbjct: 20 QALKKLQ--ASLK---LYADDSAPALAIKAT 45
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 29.3 bits (65), Expect = 0.43
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 35 WNATDLDAQDHFSDCGEDELTSSAISM 61
W TD D + G +++
Sbjct: 78 WWTTDEDLTEAVHSLGVNDILEIKFFE 104
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 29.2 bits (66), Expect = 0.50
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 10 VEELKKFNVRRRLKGAVLNAI 30
++L++FN RR+LK AV +
Sbjct: 323 QKKLQEFNARRKLKAAVKAVV 343
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain,
poly(A) site recognition, RNA, nuclear, RNA BIND
protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Length = 90
Score = 27.9 bits (63), Expect = 0.53
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 35 WNATDLDAQDHFSDCGEDELTSSAISM 61
W TD D + G +++
Sbjct: 11 WWTTDEDLTEAVHSLGVNDILEIKFFE 37
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A)
binding, structural genomics, protein structure
initiative, PSI-2; NMR {Xenopus laevis}
Length = 124
Score = 28.1 bits (63), Expect = 0.63
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 35 WNATDLDAQDHFSDCGE 51
+ +T D + HFS CG
Sbjct: 46 YGSTAQDLEAHFSSCGS 62
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 28.9 bits (65), Expect = 0.69
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 5 ISHDCVEELKKFNVRRRLKGAVLNAISS 32
+ ++KF ++L A + I S
Sbjct: 319 TLCGALSNMRKFEGSQKLAQAAILFIGS 346
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 27.7 bits (62), Expect = 0.85
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 35 WNATDLDAQDHFSDCGE 51
D +D FS G+
Sbjct: 35 ARIRPRDLEDFFSAVGK 51
>3n9u_C Cleavage and polyadenylation specificity factor S;
protein-protein complex, coexpression, heterotetramer,
mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Length = 156
Score = 28.0 bits (62), Expect = 0.88
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 35 WNATDLDAQDHFSDCGEDELTSSAISM 61
W TD G ++ +
Sbjct: 65 WWTTDQQLIQVIRSIGVYDVVELKFAE 91
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 28.1 bits (63), Expect = 1.3
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 10 VEELKKFNVRRRLKGAVLNAISS 32
+ +++F ++L A L + S
Sbjct: 304 ILNIRQFQGTQKLAQAALLYMGS 326
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 28.1 bits (63), Expect = 1.3
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 10 VEELKKFNVRRRLKGAVLNAISS 32
+E ++KF ++L A L ++S
Sbjct: 315 IENMRKFQNSQKLAQAALLYMAS 337
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 27.7 bits (62), Expect = 1.8
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 10 VEELKKFNVRRRLKGAVLNAISS 32
+ +++F ++L A L ++S
Sbjct: 300 MTNIRQFQAEKKLAQAALLYMAS 322
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 27.2 bits (60), Expect = 2.3
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 22/101 (21%)
Query: 63 LESLDDIECLQEQLYED---KTM---MNSLLEDKQLHI------------LLELYDKIS- 103
+ + + + ++ ++ T N L+ I L+ L + +S
Sbjct: 3 MAPVTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQ 62
Query: 104 SKVISPNRTPPSDVVTR---CRDALDIIRDFERSVSPTDVE 141
++ P+ + AL+ + + D +
Sbjct: 63 KRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSK 103
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase;
1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A
2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 27.2 bits (61), Expect = 2.5
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 11 EELKKFNVRRRLKGAVLNAISS 32
E +K VRRR K + + +S
Sbjct: 295 ENFRKQYVRRRWKLSF-SIVSL 315
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 26.8 bits (60), Expect = 3.9
Identities = 2/17 (11%), Positives = 8/17 (47%)
Query: 11 EELKKFNVRRRLKGAVL 27
+++K + + + A
Sbjct: 281 LQIQKNFAKSKWRQAFN 297
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET:
AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 26.5 bits (59), Expect = 4.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 11 EELKKFNVRRRLKGAVL 27
E KK VRRR K +
Sbjct: 295 ENFKKQYVRRRWKLSFS 311
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein,
secreted, prote binding, signaling protein; HET: SEP;
1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3mhr_A*
3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3p1s_A* 3p1r_A* 3p1q_A*
3p1p_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A
1a38_A 1a4o_A* 1ib1_A* ...
Length = 236
Score = 25.6 bits (55), Expect = 8.4
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 33 PKWNATDLDAQDHFSDCGEDELTS--SAISMILESLD----DIECLQEQLYEDKTMMNSL 86
P N L +FS + S AIS+ + D D+ L E Y+D T++ L
Sbjct: 168 PPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQL 227
Query: 87 LED 89
L D
Sbjct: 228 LRD 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,470,836
Number of extensions: 137129
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 62
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)