RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14628
(161 letters)
>d1rsob_ a.194.1.1 (B:) Peripheral plasma membrane protein cask {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 56
Score = 55.9 bits (135), Expect = 4e-12
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 58 AISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSK 105
A+S +L+SL++I L + +D ++S+ +D+ LH LL+LYDKI++K
Sbjct: 8 AVSQVLDSLEEIHALTDSSEKDLDFLHSVFQDQHLHTLLDLYDKINTK 55
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein
cask {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 29.0 bits (65), Expect = 0.045
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 118 VTRCRDALDIIRDFERSVSPTDVELDLSGDFEELKQILTSPHFK 161
V R ++ L+ I + + D +ELK+ILT PHF
Sbjct: 2 VQRAKEVLEEISCYP-----------ENNDAKELKRILTQPHFM 34
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU
{Aquifex aeolicus [TaxId: 63363]}
Length = 215
Score = 25.9 bits (56), Expect = 2.0
Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 52 DELTSSAISMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNR 111
+ ++ M+ +S+ +D + ++E + ELY ++ ++++
Sbjct: 124 NFMSEIVKEMVNDSVISFIQ------QDTLLAKKVIEKD--DTVDELYHQLERELMTYVL 175
Query: 112 TPPSDVVTRCRDALDIIRDFER 133
P ++ R + R +ER
Sbjct: 176 EDPRNI-KRAMHLSFVARHYER 196
>d1q59a_ f.1.4.1 (A:) Early antigen protein R {Epstein-Barr virus
[TaxId: 10376]}
Length = 172
Score = 25.7 bits (56), Expect = 2.4
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 92 LHILLELYDKISSKVISPNRTPPSDVVTR-----CRDALDIIRDFERSVSPT-DVELDLS 145
LH +LEL + + +SP T R++ + R ++ T V+LD +
Sbjct: 25 LHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIERNSETFTETWNRFITHTEHVDLDFN 84
Query: 146 GDFEEL 151
F E+
Sbjct: 85 SVFLEI 90
>d1dp3a_ a.55.1.2 (A:) DNA-binding domain (fragment?) of the TraM
protein {Escherichia coli [TaxId: 562]}
Length = 55
Score = 24.1 bits (52), Expect = 2.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 3 TFISHDCVEELKKFNVRRRLKGAVLNAIS 31
++S + V ++ K RRR +GA +S
Sbjct: 5 AYVSDEIVYKINKIVERRRAEGAKSTDVS 33
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 25.2 bits (53), Expect = 4.4
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 111 RTPPSDVVTRCRDALDIIRDFERSVS 136
V R +++ +F + S
Sbjct: 16 YDGNIWQVFSYRYTKEVLNNFSKFSS 41
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1,
OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 200
Score = 24.4 bits (53), Expect = 5.8
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 96 LELYDKISSKV---ISPNRTPPSDVVTRCRDALDIIRDF 131
+EL + + I + P + T+ ++A+DI+ F
Sbjct: 1 MELRHTPARDLDKFIEDHLLPNTCFRTQVKEAIDIVCRF 39
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 2 [TaxId: 11709]}
Length = 427
Score = 24.9 bits (54), Expect = 6.2
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 148 FEELKQILTSP 158
EE + IL+
Sbjct: 301 LEENRIILSQE 311
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 24.7 bits (52), Expect = 7.0
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 60 SMILESLDDIECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPPSDVVT 119
S + LQ++L + +NS +QL ++ +++S PP DVV
Sbjct: 62 SSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFR-----QILSREHRPPIDVVI 116
Query: 120 RCRDALDIIRDFERSVSPTDVELD 143
+ + + +F R P ++L+
Sbjct: 117 QA-GVVPRLVEFMRENQPEMLQLE 139
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 24.4 bits (52), Expect = 7.0
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 41 DAQDHFSDCGEDELTSSAISMILESLDDIECLQEQLYEDKTMMNSLLED--KQLHILLEL 98
D + + E+ + + E L+ L + + + + +L
Sbjct: 98 DIAKNVLELMEEPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDL 157
Query: 99 YDKISSKVISPNRTPPSDVVTRCRDALDIIRDFER 133
Y+K+ +++ P V R L+I + E
Sbjct: 158 YEKVREELLLYMMESPKYV-KRALLLLEIAGNIEI 191
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 212
Score = 24.4 bits (52), Expect = 7.4
Identities = 8/64 (12%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 70 ECLQEQLYEDKTMMNSLLEDKQLHILLELYDKISSKVISPNRTPPSDVVTRCRDALDIIR 129
+ ED ++ + + + E Y ++ + +++ +T + + + + R
Sbjct: 129 TAIAAYDREDASLAAQIADMDH--RVDEQYGEMMASLLAVAKTDAATL-AQMNVLALVAR 185
Query: 130 DFER 133
ER
Sbjct: 186 YIER 189
>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 23.9 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 136 SPTDVELDLSGDFEELK 152
+P +ELDL+GD E K
Sbjct: 18 APGPLELDLTGDLESFK 34
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 126
Score = 23.8 bits (51), Expect = 9.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 49 CGEDELTSSAISMILESLDDI 69
CGE EL MI + DI
Sbjct: 1 CGESELNEFYADMIFCGVQDI 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 598,769
Number of extensions: 25752
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 20
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.2 bits)