BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1463
(947 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 255 bits (652), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 238/428 (55%), Gaps = 34/428 (7%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
EN++L+D Q S+ +KER+ T++AHELAHQWFGNLVTLAWWNDLWLNEGFASY+EY G D
Sbjct: 341 ENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGAD 400
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHV---EVSHPDEITEIFDKISYSKGSSL 536
E TW +KD+ V ++ V +DAL SSHP+ EV+ P +I+E+FD ISYSKG+S+
Sbjct: 401 HAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASV 460
Query: 537 LRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRT--LPEK----MD- 589
+RM +FLT ++ K GL Y+ A ++T +LW L A + LP+ MD
Sbjct: 461 IRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDR 520
Query: 590 -VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGF--- 645
L++G G+ +Q FL ++ + T D I+ +++ G
Sbjct: 521 WTLQMGFPVITVDTKTGNISQKH---FLLDSESNV-TRSSAFDYLWIVPISSIKNGVMQD 576
Query: 646 -----PVIRVARDY-----DAGSAVVKQVRGYYRVLYDEKNWYLIIATLRNSTTYNTIHL 695
V + D D + V GY++V YDE NW +I L+ T + I +
Sbjct: 577 HYWLRDVSQAQNDLFKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQ--TNLSVIPV 634
Query: 696 LNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAYF 755
+NRAQ+I D+ NLA A ++ +ALD T +L E E +PW++A+ +L Y R +
Sbjct: 635 INRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVY 694
Query: 756 DKYKKYLLHIIRPM---YESIGFDGSPK-DDQMTVYKRVDVLNRACILGLKDCVQKALSK 811
KKYL + P+ +E++ + + + ++ M Y ++ ++ AC GL C A +
Sbjct: 695 GPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTL 754
Query: 812 YQNWISNP 819
+ W+S+P
Sbjct: 755 FDQWMSDP 762
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 233 RLPTGVKPLAYKIKILPFLIENN---FTFLGEVWIHVEVSQTTNNITLHMNDLTILERSI 289
RLPT + P +Y + + P+L N + F G+ + + T+ I +H L +
Sbjct: 53 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFICQEPTDVIIIHSKKLNYTTQGH 112
Query: 290 KQVDNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQ 349
V + + E I + + +++V L+ Y + ++ G+L D
Sbjct: 113 MVVLRGVGDSQVPE-----IDRTELVELTEYLVVHLKGS-LQPGHMYEMESEFQGELADD 166
Query: 350 MRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNM 409
+ G YRS Y N K+ + +Q Q+TDAR++FPCFDEP++KA F I++ N+TA+SNM
Sbjct: 167 LAGFYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNM 226
Query: 410 PLK 412
P K
Sbjct: 227 PPK 229
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 833 FQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYI--NQTAYSLDIGPRLLKYF 890
F+ T MSTYL+A V++F + R+W+R I Y+L++ +L +F
Sbjct: 246 FETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFF 305
Query: 891 EKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
+++ YPL K+D IALPDF AGAMEN+GL+T+R L
Sbjct: 306 ANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENAL 344
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 255 bits (652), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 238/428 (55%), Gaps = 34/428 (7%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
EN++L+D Q S+ +KER+ T++AHELAHQWFGNLVTLAWWNDLWLNEGFASY+EY G D
Sbjct: 297 ENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGAD 356
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHV---EVSHPDEITEIFDKISYSKGSSL 536
E TW +KD+ V ++ V +DAL SSHP+ EV+ P +I+E+FD ISYSKG+S+
Sbjct: 357 HAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASV 416
Query: 537 LRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRT--LPEK----MD- 589
+RM +FLT ++ K GL Y+ A ++T +LW L A + LP+ MD
Sbjct: 417 IRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDR 476
Query: 590 -VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGF--- 645
L++G G+ +Q FL ++ + T D I+ +++ G
Sbjct: 477 WTLQMGFPVITVDTKTGNISQKH---FLLDSESNV-TRSSAFDYLWIVPISSIKNGVMQD 532
Query: 646 -----PVIRVARDY-----DAGSAVVKQVRGYYRVLYDEKNWYLIIATLRNSTTYNTIHL 695
V + D D + V GY++V YDE NW +I L+ T + I +
Sbjct: 533 HYWLRDVSQAQNDLFKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQ--TNLSVIPV 590
Query: 696 LNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAYF 755
+NRAQ+I D+ NLA A ++ +ALD T +L E E +PW++A+ +L Y R +
Sbjct: 591 INRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVY 650
Query: 756 DKYKKYLLHIIRPM---YESIGFDGSPK-DDQMTVYKRVDVLNRACILGLKDCVQKALSK 811
KKYL + P+ +E++ + + + ++ M Y ++ ++ AC GL C A +
Sbjct: 651 GPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTL 710
Query: 812 YQNWISNP 819
+ W+S+P
Sbjct: 711 FDQWMSDP 718
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 233 RLPTGVKPLAYKIKILPFLIENN---FTFLGEVWIHVEVSQTTNNITLHMNDLTILERSI 289
RLPT + P +Y + + P+L N + F G+ + + T+ I +H L +
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 68
Query: 290 KQVDNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQ 349
V + + E I + + +++V L+ Y + ++ G+L D
Sbjct: 69 MVVLRGVGDSQVPE-----IDRTELVELTEYLVVHLKGS-LQPGHMYEMESEFQGELADD 122
Query: 350 MRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNM 409
+ G YRS Y N K+ + +Q Q+TDAR++FPCFDEP++KA F I++ N+TA+SNM
Sbjct: 123 LAGFYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNM 182
Query: 410 PLK 412
P K
Sbjct: 183 PPK 185
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 833 FQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYI--NQTAYSLDIGPRLLKYF 890
F+ T MSTYL+A V++F + R+W+R I Y+L++ +L +F
Sbjct: 202 FETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFF 261
Query: 891 EKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
+++ YPL K+D IALPDF AGAMEN+GL+T+R L
Sbjct: 262 ANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENAL 300
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 255 bits (652), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 238/428 (55%), Gaps = 34/428 (7%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
EN++L+D Q S+ +KER+ T++AHELAHQWFGNLVTLAWWNDLWLNEGFASY+EY G D
Sbjct: 298 ENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGAD 357
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHV---EVSHPDEITEIFDKISYSKGSSL 536
E TW +KD+ V ++ V +DAL SSHP+ EV+ P +I+E+FD ISYSKG+S+
Sbjct: 358 HAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASV 417
Query: 537 LRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRT--LPEK----MD- 589
+RM +FLT ++ K GL Y+ A ++T +LW L A + LP+ MD
Sbjct: 418 IRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDR 477
Query: 590 -VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGF--- 645
L++G G+ +Q FL ++ + T D I+ +++ G
Sbjct: 478 WTLQMGFPVITVDTKTGNISQKH---FLLDSESNV-TRSSAFDYLWIVPISSIKNGVMQD 533
Query: 646 -----PVIRVARDY-----DAGSAVVKQVRGYYRVLYDEKNWYLIIATLRNSTTYNTIHL 695
V + D D + V GY++V YDE NW +I L+ T + I +
Sbjct: 534 HYWLRDVSQAQNDLFKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQ--TNLSVIPV 591
Query: 696 LNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAYF 755
+NRAQ+I D+ NLA A ++ +ALD T +L E E +PW++A+ +L Y R +
Sbjct: 592 INRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVY 651
Query: 756 DKYKKYLLHIIRPM---YESIGFDGSPK-DDQMTVYKRVDVLNRACILGLKDCVQKALSK 811
KKYL + P+ +E++ + + + ++ M Y ++ ++ AC GL C A +
Sbjct: 652 GPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTL 711
Query: 812 YQNWISNP 819
+ W+S+P
Sbjct: 712 FDQWMSDP 719
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 233 RLPTGVKPLAYKIKILPFLIENN---FTFLGEVWIHVEVSQTTNNITLHMNDLTILERSI 289
RLPT + P +Y + + P+L N + F G+ + + T+ I +H L +
Sbjct: 10 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 69
Query: 290 KQVDNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQ 349
V + + E I + + +++V L+ Y + ++ G+L D
Sbjct: 70 MVVLRGVGDSQVPE-----IDRTELVELTEYLVVHLKGS-LQPGHMYEMESEFQGELADD 123
Query: 350 MRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNM 409
+ G YRS Y N K+ + +Q Q+TDAR++FPCFDEP++KA F I++ N+TA+SNM
Sbjct: 124 LAGFYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNM 183
Query: 410 PLK 412
P K
Sbjct: 184 PPK 186
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 833 FQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYI--NQTAYSLDIGPRLLKYF 890
F+ T MSTYL+A V++F + R+W+R I Y+L++ +L +F
Sbjct: 203 FETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFF 262
Query: 891 EKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
+++ YPL K+D IALPDF AGAMEN+GL+T+R L
Sbjct: 263 ANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENAL 301
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/428 (36%), Positives = 238/428 (55%), Gaps = 34/428 (7%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
EN++L+D Q S+ +KER+ T++AH+LAHQWFGNLVTLAWWNDLWLNEGFASY+EY G D
Sbjct: 297 ENALLFDPQSSSISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGAD 356
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHV---EVSHPDEITEIFDKISYSKGSSL 536
E TW +KD+ V ++ V +DAL SSHP+ EV+ P +I+E+FD ISYSKG+S+
Sbjct: 357 HAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASV 416
Query: 537 LRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRT--LPEK----MD- 589
+RM +FLT ++ K GL Y+ A ++T +LW L A + LP+ MD
Sbjct: 417 IRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDR 476
Query: 590 -VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGF--- 645
L++G G+ +Q FL ++ + T D I+ +++ G
Sbjct: 477 WTLQMGFPVITVDTKTGNISQKH---FLLDSESNV-TRSSAFDYLWIVPISSIKNGVMQD 532
Query: 646 -----PVIRVARDY-----DAGSAVVKQVRGYYRVLYDEKNWYLIIATLRNSTTYNTIHL 695
V + D D + V GY++V YDE NW +I L+ T + I +
Sbjct: 533 HYWLRDVSQAQNDLFKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQ--TNLSVIPV 590
Query: 696 LNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAYF 755
+NRAQ+I D+ NLA A ++ +ALD T +L E E +PW++A+ +L Y R +
Sbjct: 591 INRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVY 650
Query: 756 DKYKKYLLHIIRPM---YESIGFDGSPK-DDQMTVYKRVDVLNRACILGLKDCVQKALSK 811
KKYL + P+ +E++ + + + ++ M Y ++ ++ AC GL C A +
Sbjct: 651 GPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTL 710
Query: 812 YQNWISNP 819
+ W+S+P
Sbjct: 711 FDQWMSDP 718
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 233 RLPTGVKPLAYKIKILPFLIENN---FTFLGEVWIHVEVSQTTNNITLHMNDLTILERSI 289
RLPT + P +Y + + P+L N + F G+ + + T+ I +H L +
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 68
Query: 290 KQVDNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQ 349
V + + E I + + +++V L+ Y + ++ G+L D
Sbjct: 69 MVVLRGVGDSQVPE-----IDRTELVELTEYLVVHLKGS-LQPGHMYEMESEFQGELADD 122
Query: 350 MRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNM 409
+ G YRS Y N K+ + +Q Q+TDAR++FPCFDEP++KA F I++ N+TA+SNM
Sbjct: 123 LAGFYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNM 182
Query: 410 PLK 412
P K
Sbjct: 183 PPK 185
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 833 FQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYI--NQTAYSLDIGPRLLKYF 890
F+ T MSTYL+A V++F + R+W+R I Y+L++ +L +F
Sbjct: 202 FETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFF 261
Query: 891 EKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
+++ YPL K+D IALPDF AGAMEN+GL+T+R L
Sbjct: 262 ANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENAL 300
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/425 (35%), Positives = 233/425 (54%), Gaps = 36/425 (8%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
ENS+L+D S++ +KER+ T++AHELAHQWFGNLVT+ WWNDLWLNEGFASY+EY G D
Sbjct: 300 ENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGAD 359
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHV---EVSHPDEITEIFDKISYSKGSSL 536
E TW +KD+ V++++ V +DAL SSHP+ E++ P +I+E+FD ISYSKG+S+
Sbjct: 360 YAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASV 419
Query: 537 LRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMR-----TLPEKMD-- 589
LRM FL+ +V K GL Y+ A ++ LW L A + T+ + M+
Sbjct: 420 LRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRW 479
Query: 590 VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTG----- 644
L++G + G+ +Q FL + + T P + I+ +++ G
Sbjct: 480 TLQMGFPVITVDTSTGTLSQEH---FLLDPDSNV-TRPSEFNYVWIVPITSIRDGRQQQD 535
Query: 645 FPVIRVARDYDAGSAVVKQ-------VRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLN 697
+ +I V D S + V GYYRV YDE+NW I L+ ++ I ++N
Sbjct: 536 YWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRD--HSAIPVIN 593
Query: 698 RAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAYFDK 757
RAQ+I+DA NLA A + +AL+ T +L E + +PW +A+ +L Y + R +
Sbjct: 594 RAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGP 653
Query: 758 YKKYLLHIIRPMYESIGFDGSPK------DDQMTVYKRVDVLNRACILGLKDCVQKALSK 811
K YL + P++ I F + ++ M Y V+ ++ AC G+ +C +
Sbjct: 654 MKNYLKKQVTPLF--IHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGL 711
Query: 812 YQNWI 816
++ W+
Sbjct: 712 FKQWM 716
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 12/201 (5%)
Query: 226 TKAKFNGRLPTGVKPLAYKIKILPFLIENN---FTFLGEVWIHVEVSQTTNNITLHMNDL 282
+KA RLP +KP +Y++ + P+L N+ + F G + + T+ I +H L
Sbjct: 4 SKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL 63
Query: 283 TILERSIKQVDNRSANWESDEGTSLTIGQVRNDTI--NQFMVFELEDEQFWATKRYVLYI 340
+V R G S + + + +++V L+ +Y +
Sbjct: 64 NYTLSQGHRVVLRGV------GGSQPPDIDKTELVEPTEYLVVHLKGSLV-KDSQYEMDS 116
Query: 341 KYVGKLNDQMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRL 400
++ G+L D + G YRS Y N ++ + +Q QA DAR++FPCFDEP++KA+F I++
Sbjct: 117 EFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHP 176
Query: 401 PNMTAISNMPLKDGNQSDPEN 421
++TA+SNM K + PE+
Sbjct: 177 KDLTALSNMLPKGPSTPLPED 197
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 832 HFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYI--NQTAYSLDIGPRLLKY 889
F T MSTYL+A V++F + + R+W+R I Y+L++ +L +
Sbjct: 204 EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNF 263
Query: 890 FEKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFR-TAILKEILRGCEKKKNKKIS 945
F ++D YPL K+D I LPDF AGAMEN+GL+T+R ++L + L K + ++
Sbjct: 264 FAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVT 320
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 189/403 (46%), Gaps = 44/403 (10%)
Query: 329 QFWATKRYVLYIKYVGKLNDQMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPC----- 383
+F T R Y+ YVG G +R YE I+AS D R +P
Sbjct: 151 EFQDTPRMSTYLLYVGI------GKFRYEYEKYRDIDLILAS---LKDIRSKYPLDMARK 201
Query: 384 ---FDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPENSMLYDE---QISTNYH--- 434
F E +A LP M IS +P + ++ + E I+ N
Sbjct: 202 SVEFYENYFGIPYA-----LPKMHLIS-VPEFGAGAMENWGAITFREIYMDIAENSAVTV 255
Query: 435 KERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVD 494
K AT++AHE+AHQWFG+LVT+ WWNDLWLNE FA+++ Y +D++ W F V
Sbjct: 256 KRNSATVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVS 315
Query: 495 ELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQ 554
D+LK++HP+ V+V PDEI++IFD+ISY KG+S+LRM E + E + G+
Sbjct: 316 RTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGIS 375
Query: 555 KYIKKKAMGSSTQAELWAFLTN-AGHEMRTLPEKMDVLKLGLQKYIKKKAMGSSTQAELW 613
KY+ G++ ++LW + + +G ++ + E +K IK K G
Sbjct: 376 KYLNDHKFGNAEGSDLWTAIEDVSGKPVKRVMEYW--IKNPGYPVIKLKRNGRKITMYQT 433
Query: 614 AFLTNAGHEMR-TLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQVRGYYRVLY 672
FL N E R +P N+ + + L+ + + D + G+YRVLY
Sbjct: 434 RFLLNGEEEGRWPVPVNIKKKDGVERILLEDEASI-----EADGLIKINADSAGFYRVLY 488
Query: 673 DEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLD 715
D+ + ++ R+ + L+R L+DD +G +D
Sbjct: 489 DDATFSDVMGHYRD------LSPLDRIGLVDDLFAFLLSGHID 525
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 340 IKYVGKLNDQMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGR 399
I + GK++D + G+Y + E ++ + FQATDARR FPC D P+ KA FAI++
Sbjct: 73 ISFAGKVSDSLSGIYYAGRE-----NGMITTHFQATDARRMFPCVDHPAYKAVFAITVVI 127
Query: 400 LPNMTAISNMPLK 412
+ AISNMP K
Sbjct: 128 DKDYDAISNMPPK 140
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 804 CVQKALSKYQNWISN--PSKIERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHS 861
+ + K + ISN P +IE + V + FQ+T MSTYL+ + + F R + +
Sbjct: 122 AITVVIDKDYDAISNMPPKRIEVSERKVVE-FQDTPRMSTYLLYVGIGKF--RYEYEKYR 178
Query: 862 GSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGL 921
+ + + I ++ Y LD+ + ++++E YF Y L K +I++P+FGAGAMEN+G
Sbjct: 179 DIDLILASLKDI-RSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGA 237
Query: 922 ITFR 925
ITFR
Sbjct: 238 ITFR 241
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 188/403 (46%), Gaps = 44/403 (10%)
Query: 329 QFWATKRYVLYIKYVGKLNDQMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPC----- 383
+F T R Y+ YVG G +R YE I+AS D R +P
Sbjct: 151 EFQDTPRMSTYLLYVGI------GKFRYEYEKYRDIDLILAS---LKDIRSKYPLDMARK 201
Query: 384 ---FDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPENSMLYDE---QISTNYH--- 434
F E +A LP M IS +P + ++ + E I+ N
Sbjct: 202 SVEFYENYFGIPYA-----LPKMHLIS-VPEFGAGAMENWGAITFREIYMDIAENSAVTV 255
Query: 435 KERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVD 494
K A ++AHE+AHQWFG+LVT+ WWNDLWLNE FA+++ Y +D++ W F V
Sbjct: 256 KRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVS 315
Query: 495 ELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQ 554
D+LK++HP+ V+V PDEI++IFD+ISY KG+S+LRM E + E + G+
Sbjct: 316 RTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGIS 375
Query: 555 KYIKKKAMGSSTQAELWAFLTN-AGHEMRTLPEKMDVLKLGLQKYIKKKAMGSSTQAELW 613
KY+ G++ ++LW + + +G ++ + E +K IK K G
Sbjct: 376 KYLNDHKFGNAEGSDLWTAIEDVSGKPVKRVMEYW--IKNPGYPVIKLKRNGRKITMYQT 433
Query: 614 AFLTNAGHEMR-TLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQVRGYYRVLY 672
FL N E R +P N+ + + L+ + + D + G+YRVLY
Sbjct: 434 RFLLNGEEEGRWPVPVNIKKKDGVERILLEDEASI-----EADGLIKINADSAGFYRVLY 488
Query: 673 DEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLD 715
D+ + ++ R+ + L+R L+DD +G +D
Sbjct: 489 DDATFSDVMGHYRD------LSPLDRIGLVDDLFAFLLSGHID 525
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 340 IKYVGKLNDQMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGR 399
I + GK++D + G+Y + E ++ + F+ATDARR FPC D P+ KA FAI++
Sbjct: 73 ISFAGKVSDSLSGIYYAGRE-----NGMITTHFEATDARRMFPCVDHPAYKAVFAITVVI 127
Query: 400 LPNMTAISNMPLK 412
+ AISNMP K
Sbjct: 128 DKDYDAISNMPPK 140
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 804 CVQKALSKYQNWISN--PSKIERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHS 861
+ + K + ISN P +IE + V + FQ+T MSTYL+ + + F R + +
Sbjct: 122 AITVVIDKDYDAISNMPPKRIEVSERKVVE-FQDTPRMSTYLLYVGIGKF--RYEYEKYR 178
Query: 862 GSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGL 921
+ + + I ++ Y LD+ + ++++E YF Y L K +I++P+FGAGAMEN+G
Sbjct: 179 DIDLILASLKDI-RSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGA 237
Query: 922 ITFR 925
ITFR
Sbjct: 238 ITFR 241
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 24/231 (10%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
E+++L+D + S+ K I VAHELAHQWFGNLVT+ WWNDLWLNEGFA ++E+ V
Sbjct: 335 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVS 394
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
K+ D F + + +DAL SSHPV V +P +I E+FD +SY KG+ +L M
Sbjct: 395 VTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNM 453
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
+L+ + K G+ +Y++K + ++ +LW + + D +K G+ +
Sbjct: 454 LREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIC--------PTDGVK-GMDGFC 504
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRV 650
+ SS+ E +DV+T+MNTWTLQ GFP+I +
Sbjct: 505 SRSQHSSSSSH--------------WHQEGVDVKTMMNTWTLQKGFPLITI 541
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQV 292
RLP V P+ Y + I L TF G + + SQ T+ I LH + L I +++
Sbjct: 59 RLPEYVIPVHYDLLIHANL--TTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLR-- 114
Query: 293 DNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRG 352
+ A E + R + I L E Y + I Y G L++ G
Sbjct: 115 --KGAGERLSEEPLQVLEHPRQEQIAL-----LAPEPLLVGLPYTVVIHYAGNLSETFHG 167
Query: 353 LYRSSYEVNNTKRWIMAS-QFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPL 411
Y+S+Y + I+AS QF+ T AR AFPCFDEP+ KA F+I I R P AISNMPL
Sbjct: 168 FYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPL 227
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 60/99 (60%)
Query: 831 DHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLDIGPRLLKYF 890
DHF TV MSTYLVA ++DF V++ + INQ Y+LD LL+++
Sbjct: 240 DHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFY 299
Query: 891 EKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
E YF YPL K D+ A+PDF +GAMEN+GL T+R + L
Sbjct: 300 EDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESAL 338
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 664 VRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVT 723
+ GYY V Y++ W + L+ T+ + +RA LI++A L G L + ALD++
Sbjct: 610 MNGYYIVHYEDDGWDSLTGLLKG--THTAVSSNDRASLINNAFQLVSIGKLSIEKALDLS 667
Query: 724 AYLQYETELVPWRSAMQALGYIEGQLYRRAYFD---KYKKYLLHIIRPMYESIGFDGSPK 780
YL++ETE++P + L + + +R + ++K +L+ ++R + D
Sbjct: 668 LYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDL-----IDKQTW 722
Query: 781 DDQMTVYKRV---DVLNRACILGLKDCVQKALSKYQNW 815
D+ +V +R+ +L AC+ + CVQ+A ++ W
Sbjct: 723 TDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKW 760
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 24/231 (10%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
E+++L+D + S+ K I VAHELAHQWFGNLVT+ WWNDLWLNEGFA ++E+ V
Sbjct: 284 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVS 343
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
K+ D F + + +DAL SSHPV V +P +I E+FD +SY KG+ +L M
Sbjct: 344 VTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNM 402
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
+L+ + K G+ +Y++K + ++ +LW + + D +K G+ +
Sbjct: 403 LREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIC--------PTDGVK-GMDGFC 453
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRV 650
+ SS+ E +DV+T+MNTWTLQ GFP+I +
Sbjct: 454 SRSQHSSSSSH--------------WHQEGVDVKTMMNTWTLQKGFPLITI 490
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQV 292
RLP V P+ Y + I L TF G + + SQ T+ I LH + L I +++
Sbjct: 8 RLPEYVIPVHYDLLIHANL--TTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLR-- 63
Query: 293 DNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRG 352
+ A E + R + I L E Y + I Y G L++ G
Sbjct: 64 --KGAGERLSEEPLQVLEHPRQEQIAL-----LAPEPLLVGLPYTVVIHYAGNLSETFHG 116
Query: 353 LYRSSYEVNNTKRWIMAS-QFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPL 411
Y+S+Y + I+AS QF+ T AR AFPCFDEP+ KA F+I I R P AISNMPL
Sbjct: 117 FYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPL 176
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 60/99 (60%)
Query: 831 DHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLDIGPRLLKYF 890
DHF TV MSTYLVA ++DF V++ + INQ Y+LD LL+++
Sbjct: 189 DHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFY 248
Query: 891 EKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
E YF YPL K D+ A+PDF +GAMEN+GL T+R + L
Sbjct: 249 EDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESAL 287
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 664 VRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVT 723
+ GYY V Y++ W + L+ T+ + +RA LI++A L G L + ALD++
Sbjct: 559 MNGYYIVHYEDDGWDSLTGLLKG--THTAVSSNDRASLINNAFQLVSIGKLSIEKALDLS 616
Query: 724 AYLQYETELVPWRSAMQALGYIEGQLYRRAYFD---KYKKYLLHIIRPMYESIGFDGSPK 780
YL++ETE++P + L + + +R + ++K +L+ ++R + D
Sbjct: 617 LYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDL-----IDKQTW 671
Query: 781 DDQMTVYKRV---DVLNRACILGLKDCVQKALSKYQNW 815
D+ +V +R+ +L AC+ + CVQ+A ++ W
Sbjct: 672 TDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKW 709
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 24/231 (10%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
E+++L+D + S+ K I VAHELAHQWFGNLVT+ WWNDLWLNEGFA ++E+ V
Sbjct: 293 ESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVS 352
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
K+ D F + + +DAL SSHPV V +P +I E+FD +SY KG+ +L M
Sbjct: 353 VTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNM 411
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
+L+ + K G+ +Y++K + ++ +LW + + D +K G+ +
Sbjct: 412 LREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIC--------PTDGVK-GMDGFC 462
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRV 650
+ SS+ E +DV+T+MNTWTLQ GFP+I +
Sbjct: 463 SRSQHSSSSSH--------------WHQERVDVKTMMNTWTLQRGFPLITI 499
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQV 292
RLP V P+ Y + I L TF G + + SQ T+ I LH + L I +++
Sbjct: 17 RLPEYVIPVHYDLLIHANL--TTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLR-- 72
Query: 293 DNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRG 352
+ A E + R + I L E Y + I Y G L++ G
Sbjct: 73 --KGAGERLSEEPLQVLEHPRQEQIAL-----LAPEPLLVGLPYTVVIHYAGNLSETFHG 125
Query: 353 LYRSSYEVNNTKRWIMAS-QFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPL 411
Y+S+Y + I+AS QF+ T AR AFPCFDEP+ KA F+I I R P AISNMPL
Sbjct: 126 FYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPL 185
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 60/99 (60%)
Query: 831 DHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLDIGPRLLKYF 890
DHF TV MSTYLVA ++DF V++ + INQ Y+LD LL+++
Sbjct: 198 DHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFY 257
Query: 891 EKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
E YF YPL K D+ A+PDF +GAMEN+GL T+R + L
Sbjct: 258 EDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESAL 296
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 13/158 (8%)
Query: 664 VRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVT 723
+ GYY V Y++ W + L+ T+ + +RA LI++A L G L + ALD++
Sbjct: 568 MNGYYIVHYEDDGWDSLTGLLKG--THTAVSSNDRASLINNAFQLVSIGKLSIEKALDLS 625
Query: 724 AYLQYETELVPWRSAMQALGYIEGQLYRRAYFD---KYKKYLLHIIRPMYESIGFDGSPK 780
YL++ETE++P + L + + +R + ++K +L+ ++R + D
Sbjct: 626 LYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDL-----IDKQTW 680
Query: 781 DDQMTVYKRV---DVLNRACILGLKDCVQKALSKYQNW 815
D+ +V +R+ ++L AC+ + CVQ+A ++ W
Sbjct: 681 TDEGSVSERMLRSELLLLACVHNYQPCVQRAEGYFRKW 718
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 138/258 (53%), Gaps = 26/258 (10%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
E S+L+D + S+ K + ++AHELAHQWFGNLVT+ WWND+WLNEGFA Y+E V+
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVN 405
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
+ + D F ++ V D+L SS P+ P +I E+FD++SY+KG+ +L M
Sbjct: 406 ATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNM 464
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
+ FL E + G+ +Y+KK + ++ +LW+ L+N+ E D G+
Sbjct: 465 LKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLE-------SDFTSGGVCHSD 517
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSA 659
K + + AFL EN +V+ +M TWTLQ G P++ V + D S
Sbjct: 518 PKMT------SNMLAFLG----------ENAEVKEMMTTWTLQKGIPLLVVKQ--DGCSL 559
Query: 660 VVKQVRGYYRVLYDEKNW 677
++Q R V ++ W
Sbjct: 560 RLQQERFLQGVFQEDPEW 577
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 822 IERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSG-SFRVWSREEYINQTAYSL 880
IE G + DHF+ TV MSTYLVA V DF H + SG +++ + NQT Y+L
Sbjct: 242 IELEGGLLEDHFETTVKMSTYLVAYIVCDF-HSLSGFTSSGVKVSIYASPDKRNQTHYAL 300
Query: 881 DIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
+LL ++EKYFD +YPL K D+IA+PDF GAMEN+GLIT+R L
Sbjct: 301 QASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSL 349
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 10/179 (5%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQV 292
RLP+ V PL Y + + P L + F+ I V VS T I LH DL I +++
Sbjct: 68 RLPSVVIPLHYDLFVHPNL--TSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSE 125
Query: 293 DNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRG 352
++ E L+ + L E+ +Y + + + KL D G
Sbjct: 126 EDSRYMKPGKELKVLSYPAHEQIAL-------LVPEKLTPHLKYYVAMDFQAKLGDGFEG 178
Query: 353 LYRSSYE-VNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMP 410
Y+S+Y + R + + F+ T AR AFPCFDEP KA F+I I R A+SNMP
Sbjct: 179 FYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMP 237
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 666 GYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAY 725
GYY V Y+ W +I L + T + +R LI D L AG L ALD+T Y
Sbjct: 629 GYYIVHYEGHGWDQLITQLNQNHTL--LRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYY 686
Query: 726 LQYETELVPWRSAMQALGYIEG---QLYRRAYFD---KYKKYLLHIIRPMYESIGFDGSP 779
LQ+ET P + ++ L Y+E + RR D K+YLL +P+ D
Sbjct: 687 LQHETS-SP--ALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPV-----IDRQS 738
Query: 780 KDDQMTVYKRV---DVLNRACILGLKDCVQKALSKYQNWISNPSKI 822
D+ +V+ R+ +L AC L C+QKA + W+ + K+
Sbjct: 739 WSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKL 784
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 26/258 (10%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
E S+L+D + S+ K + ++AHELAHQWFGNLVT+ WWND+WL EGFA Y+E V+
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVN 405
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
+ + D F ++ V D+L SS P+ P +I E+FD++SY+KG+ +L M
Sbjct: 406 ATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNM 464
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
+ FL E + G+ +Y+KK + ++ +LW+ L+N+ E D G+
Sbjct: 465 LKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLE-------SDFTSGGVCHSD 517
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSA 659
K + + AFL EN +V+ +M TWTLQ G P++ V + D S
Sbjct: 518 PKMT------SNMLAFLG----------ENAEVKEMMTTWTLQKGIPLLVVKQ--DGCSL 559
Query: 660 VVKQVRGYYRVLYDEKNW 677
++Q R V ++ W
Sbjct: 560 RLQQERFLQGVFQEDPEW 577
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 822 IERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSG-SFRVWSREEYINQTAYSL 880
IE G + DHF+ TV MSTYLVA V DF H + SG +++ + NQT Y+L
Sbjct: 242 IELEGGLLEDHFETTVKMSTYLVAYIVCDF-HSLSGFTSSGVKVSIYASPDKRNQTHYAL 300
Query: 881 DIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
+LL ++EKYFD +YPL K D+IA+PDF GAMEN+GLIT+R L
Sbjct: 301 QASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSL 349
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 10/179 (5%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQV 292
RLP+ V PL Y + + P L + F+ I V VS T I LH DL I +++
Sbjct: 68 RLPSVVIPLHYDLFVHPNL--TSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSE 125
Query: 293 DNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRG 352
++ E L+ + L E+ +Y + + + KL D G
Sbjct: 126 EDSRYMKPGKELKVLSYPAHEQIAL-------LVPEKLTPHLKYYVAMDFQAKLGDGFEG 178
Query: 353 LYRSSYE-VNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMP 410
Y+S+Y + R + + F+ T AR AFPCFDEP KA F+I I R A+SNMP
Sbjct: 179 FYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMP 237
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 666 GYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAY 725
GYY V Y+ W +I L + T + +R LI D L AG L ALD+T Y
Sbjct: 629 GYYIVHYEGHGWDQLITQLNQNHTL--LRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYY 686
Query: 726 LQYETELVPWRSAMQALGYIEG---QLYRRAYFD---KYKKYLLHIIRPMYESIGFDGSP 779
LQ+ET P + ++ L Y+E + RR D K+YLL +P+ D
Sbjct: 687 LQHETS-SP--ALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPV-----IDRQS 738
Query: 780 KDDQMTVYKRV---DVLNRACILGLKDCVQKALSKYQNWISNPSKI 822
D+ +V+ R+ +L AC L C+QKA + W+ + K+
Sbjct: 739 WSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKL 784
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 349 QMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPC------FDEPSLKAKFAISIGRLPN 402
+ Y + Y + ++ + + + + A C FDE ++ +S RL N
Sbjct: 199 HLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLS--RL-N 255
Query: 403 MTAISNMPL----KDGNQSDPENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLA 458
+ A+S+ + G NS+L ++ S ++ RI T+V HE HQ+ GN VTL
Sbjct: 256 LVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLR 315
Query: 459 WWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFL-DALKSSHPVHVE--V 515
W L L EG + E + + T + + VD L++V FL D+ SHP+ E V
Sbjct: 316 DWFQLTLKEGLTVHRENLFSEEMTKTVTTR-LSHVDLLRSVQFLEDSSPLSHPIRPESYV 374
Query: 516 SHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLT 575
S + + Y KGS ++RM L E K G YIKK G++ E + +
Sbjct: 375 S----MANFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKND-GNTATCEDFNYAM 429
Query: 576 NAGHEMR 582
++M+
Sbjct: 430 EQAYKMK 436
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 811 KYQNWISNPSKI---ERTGPYVWDHFQETVFMSTYLVAMAVTDFSHR-----VHNDDHSG 862
KY +SN K+ E G F + YL A+ D H
Sbjct: 154 KYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKV 213
Query: 863 SFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLI 922
V+S E+Y+++ ++L+ + + + E YF Y L + +++A+ DF GAMEN GL
Sbjct: 214 ELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLN 273
Query: 923 TF 924
F
Sbjct: 274 IF 275
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 349 QMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPC------FDEPSLKAKFAISIGRLPN 402
+ Y + Y + ++ + + + + A C FDE ++ +S RL N
Sbjct: 200 HLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLS--RL-N 256
Query: 403 MTAISNMPL----KDGNQSDPENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLA 458
+ A+S+ + G NS+L ++ S ++ RI T+V HE HQ+ GN VTL
Sbjct: 257 LVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLR 316
Query: 459 WWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFL-DALKSSHPVHVE--V 515
W L L EG + E + + T + + VD L++V FL D+ SHP+ E V
Sbjct: 317 DWFQLTLKEGLTVHRENLFSEEMTKTVTTR-LSHVDLLRSVQFLEDSSPLSHPIRPESYV 375
Query: 516 SHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLT 575
S + + Y KGS ++RM L E K G YIKK G++ E + +
Sbjct: 376 S----MENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKND-GNTATCEDFNYAM 430
Query: 576 NAGHEMR 582
++M+
Sbjct: 431 EQAYKMK 437
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 811 KYQNWISNPSKI---ERTGPYVWDHFQETVFMSTYLVAMAVTDFSHR-----VHNDDHSG 862
KY +SN K+ E G F + YL A+ D H
Sbjct: 155 KYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKV 214
Query: 863 SFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLI 922
V+S E+Y+++ ++L+ + + + E YF Y L + +++A+ DF GAMEN GL
Sbjct: 215 ELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLN 274
Query: 923 TF 924
F
Sbjct: 275 IF 276
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 349 QMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPC------FDEPSLKAKFAISIGRLPN 402
+ Y + Y + ++ + + + + A C FDE ++ +S RL N
Sbjct: 199 HLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLS--RL-N 255
Query: 403 MTAISNMPL----KDGNQSDPENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLA 458
+ A+S+ + G NS+L ++ S ++ RI T+V HE HQ+ GN VTL
Sbjct: 256 LVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLR 315
Query: 459 WWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFL-DALKSSHPVHVE--V 515
W L L EG + E + + T + + VD L++V FL D+ SHP+ E V
Sbjct: 316 DWFQLTLKEGLTVHRENLFSEEMTKTVTTR-LSHVDLLRSVQFLEDSSPLSHPIRPESYV 374
Query: 516 SHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLT 575
S + + Y KGS ++RM L E K G YIKK G++ E + +
Sbjct: 375 S----MENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKND-GNTATCEDFNYAM 429
Query: 576 NAGHEMR 582
++M+
Sbjct: 430 EQAYKMK 436
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 811 KYQNWISNPSKI---ERTGPYVWDHFQETVFMSTYLVAMAVTDFSHR-----VHNDDHSG 862
KY +SN K+ E G F + YL A+ D H
Sbjct: 154 KYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKV 213
Query: 863 SFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLI 922
V+S E+Y+++ ++L+ + + + E YF Y L + +++A+ DF GAMEN GL
Sbjct: 214 ELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLN 273
Query: 923 TF 924
F
Sbjct: 274 IF 275
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 349 QMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPC------FDEPSLKAKFAISIGRLPN 402
+ Y + Y + ++ + + + + A C FDE ++ +S RL N
Sbjct: 200 HLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLS--RL-N 256
Query: 403 MTAISNMPL----KDGNQSDPENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLA 458
+ A+S+ + G NS+L ++ S ++ RI T+V HE HQ+ GN VTL
Sbjct: 257 LVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLR 316
Query: 459 WWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFL-DALKSSHPVHVE--V 515
W L L EG + E + + T + + VD L++V FL D+ SHP+ E V
Sbjct: 317 DWFQLTLKEGLTVHRENLFSEEMTKTVTTR-LSHVDLLRSVQFLEDSSPLSHPIRPESYV 375
Query: 516 SHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLT 575
S + + Y KGS ++RM L E K G YIKK G++ E + +
Sbjct: 376 S----MENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKND-GNTATCEDFNYAM 430
Query: 576 NAGHEMR 582
++M+
Sbjct: 431 EQAYKMK 437
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 811 KYQNWISNPSKI---ERTGPYVWDHFQETVFMSTYLVAMAVTDFSHR-----VHNDDHSG 862
KY +SN K+ E G F + YL A+ D H
Sbjct: 155 KYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKV 214
Query: 863 SFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLI 922
V+S E+Y+++ ++L+ + + + E YF Y L + +++A+ DF GAMEN GL
Sbjct: 215 ELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLN 274
Query: 923 TF 924
F
Sbjct: 275 IF 276
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE------YFGVDS--VEHTWKIKD 489
+ ++AHELAH W GNLVT W DLWLNEGF SY+E FG D +E +D
Sbjct: 294 LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQD 353
Query: 490 IFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVL 549
+ + LDA + + ++ PD + F + Y KG L E E
Sbjct: 354 LNA-----EILELDASDTQLYIDLKGRDPD---DAFSGVPYVKGQLFLMYLEEKFGRERF 405
Query: 550 KLGLQKYIKKKAMGS 564
+ +Y A S
Sbjct: 406 DAFVLEYFDSHAFQS 420
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 664 VRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVT 723
+ GYY V Y++ W + L+ T+ + +RA LI++A L G L + ALD++
Sbjct: 76 MNGYYIVHYEDDGWDSLTGLLKG--THTAVSSNDRASLINNAFQLVSIGKLSIEKALDLS 133
Query: 724 AYLQYETELVPWRSAMQALGYIEGQLYRRAYFD---KYKKYLLHIIRPMYESIGFDGSPK 780
YL++ETE++P + L + + +R + ++K +L+ ++R + D
Sbjct: 134 LYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDL-----IDKQTW 188
Query: 781 DDQMTVYKRV---DVLNRACILGLKDCVQKALSKYQNW 815
D+ +V +R+ +L AC+ + CVQ+A ++ W
Sbjct: 189 TDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKW 226
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 434 HKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE--YFGVDSVEHTWKIKDIF 491
H ++AHELAH W GNLVT WN WLNEG+ Y+E G E T +
Sbjct: 291 HDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALI 350
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEIT---EIFDKISYSKGSSLLRMAEHFLTTEV 548
+LQN +D++K V + ++ T + F + Y KG +LL E L +
Sbjct: 351 GWSDLQNS--IDSMKDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKA 408
Query: 549 -LKLGLQKYIKKKAMGS 564
++ Y KK A S
Sbjct: 409 EFDPFIRHYFKKFAKKS 425
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISI 397
SQ +A AR FPCFD PS+K+ F SI
Sbjct: 144 SQLEAIHARSLFPCFDTPSVKSTFTASI 171
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 434 HKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE--YFGVDSVEHTWKIKDIF 491
H ++AHELAH W GNLVT WN WLNEG+ Y+E G E T +
Sbjct: 291 HDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALI 350
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEIT---EIFDKISYSKGSSLLRMAEHFLTTEV 548
+LQN +D++K V + ++ T + F + Y KG +LL E L +
Sbjct: 351 GWSDLQNS--IDSMKDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKA 408
Query: 549 -LKLGLQKYIKKKAMGS 564
++ Y KK A S
Sbjct: 409 EFDPFIRHYFKKFAKKS 425
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISI 397
SQ +A AR FPCFD PS+K+ F SI
Sbjct: 144 SQLEAIHARSLFPCFDTPSVKSTFTASI 171
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 423 MLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASY--IEYFGVDS 480
+L D + +T+ E I ++V HE H W GN VT W L L EG + E+ G +
Sbjct: 272 VLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRA 331
Query: 481 VEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMA 540
+I++I ++ + Q F DA ++HPV + +E + Y KG+ ++R
Sbjct: 332 SRAVRRIENIRLLRQHQ--FPEDAGPTAHPVR--PASYEEXNNFYTXTVYEKGAEVVRXY 387
Query: 541 EHFLTTEVLKLGLQKYIKK 559
L E + G + Y ++
Sbjct: 388 HTLLGEEGFQKGXKLYFQR 406
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 83/212 (39%), Gaps = 35/212 (16%)
Query: 726 LQYETELVPWRS-AMQALGYIEGQLYRRAYFDKYKKYLLHIIRPMYESIGFDGSPKDDQM 784
++ ETE++P + ++ L G L+ + + ++K +I RP
Sbjct: 88 VEVETEILPAENKSLXGLYASGGNLFTQCEPEGFRKITFYIDRP---------------- 131
Query: 785 TVYKRVDVLNRACILGLKDCVQKALSKYQNWISNPSKI---ERTGPYVWDHFQETVFMST 841
DV ++ + D +Y +SN +KI E + W +++ +
Sbjct: 132 ------DVXSKFTTTIVADK-----KRYPVLLSNGNKIDGGEFSDGRHWVKWEDPFSKPS 180
Query: 842 YLVAMAVTDFS----HRVHNDDHSGSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYH 897
YL A+ D + + + ++ E + ++++ K+ E F
Sbjct: 181 YLFALVAGDLAVTEDYFTTXSGRNVKIEFYTTEADKPKVGFAVESLKNAXKWDETRFGLE 240
Query: 898 YPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
Y L+ ++A+ DF GA EN GL F T +
Sbjct: 241 YDLDIFXVVAVGDFNXGAXENKGLNIFNTKFV 272
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSV--EHTWKIKDIFVVDE 495
++ ++AHE++H W GNLVT W+ WLNEG Y+E + E + E
Sbjct: 289 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGE 348
Query: 496 LQNVFFLDALKSSHPVHVEVSHPDEITEI-----FDKISYSKGSSLLRMAEHFLTTEVLK 550
LQN + +HP V ++T+I + + Y KG +LL E L +
Sbjct: 349 LQNS--VKTFGETHPFTKLVV---DLTDIDPNVAYSSVPYEKGFALLFYLEQLLGGPEIF 403
Query: 551 LG-LQKYIKKKAMGSSTQAELWAFL 574
LG L+ Y++K + S T + FL
Sbjct: 404 LGFLKAYVEKFSYKSITTDDWKDFL 428
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPEN 421
SQ QA R PC D PS+K + + + A+ + ++DG DPE+
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPED 183
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE------YFGVDSVEHTWKIKDIF 491
++ ++AHE++H W GNLVT W+ WLNEG Y+E FG E +
Sbjct: 290 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFG----EKFRHFNALG 345
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEITEI-----FDKISYSKGSSLLRMAEHFLTT 546
ELQN + +HP V ++T+I + + Y KG +LL E L
Sbjct: 346 GWGELQNS--VKTFGETHPFTKLVV---DLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 400
Query: 547 EVLKLG-LQKYIKKKAMGSSTQAELWAFL 574
+ LG L+ Y++K + S T + FL
Sbjct: 401 PEIFLGFLKAYVEKFSYKSITTDDWKDFL 429
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPEN 421
SQ QA R PC D PS+K + + + A+ + ++DG DPE+
Sbjct: 134 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPED 184
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE------YFGVDSVEHTWKIKDIF 491
++ ++AHE++H W GNLVT W+ WLNEG Y+E FG E +
Sbjct: 290 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFG----EKFRHFNALG 345
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEITEI-----FDKISYSKGSSLLRMAEHFLTT 546
ELQN + +HP V ++T+I + + Y KG +LL E L
Sbjct: 346 GWGELQNS--VKTFGETHPFTKLVV---DLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 400
Query: 547 EVLKLG-LQKYIKKKAMGSSTQAELWAFL 574
+ LG L+ Y++K + S T + FL
Sbjct: 401 PEIFLGFLKAYVEKFSYKSITTDDWKDFL 429
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPEN 421
SQ QA R PC D PS+K + + + A+ + ++DG DPE+
Sbjct: 134 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPED 184
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE------YFGVDSVEHTWKIKDIF 491
++ ++AHE++H W GNLVT W+ WLNEG Y+E FG E +
Sbjct: 287 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFG----EKFRHFNALG 342
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEITEI-----FDKISYSKGSSLLRMAEHFLTT 546
ELQN + +HP V ++T+I + + Y KG +LL E L
Sbjct: 343 GWGELQNS--VKTFGETHPFTKLVV---DLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 397
Query: 547 EVLKLG-LQKYIKKKAMGSSTQAELWAFL 574
+ LG L+ Y++K + S T + FL
Sbjct: 398 PEIFLGFLKAYVEKFSYKSITTDDWKDFL 426
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPEN 421
SQ QA R PC D PS+K + + + A+ + ++DG DPE+
Sbjct: 131 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPED 181
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE------YFGVDSVEHTWKIKDIF 491
++ ++AHE++H W GNLVT W+ WLNEG Y+E FG E +
Sbjct: 295 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFG----EKFRHFNALG 350
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEITEI-----FDKISYSKGSSLLRMAEHFLTT 546
ELQN + +HP V ++T+I + + Y KG +LL E L
Sbjct: 351 GWGELQNS--VKTFGETHPFTKLVV---DLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 405
Query: 547 EVLKLG-LQKYIKKKAMGSSTQAELWAFL 574
+ LG L+ Y++K + S T + FL
Sbjct: 406 PEIFLGFLKAYVEKFSYKSITTDDWKDFL 434
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPEN 421
SQ QA R PC D PS+K + + + A+ + ++DG DPE+
Sbjct: 139 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPED 189
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE------YFGVDSVEHTWKIKDIF 491
++ ++AHE++H W GNLVT W+ WLNEG Y+E FG E +
Sbjct: 289 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFG----EKFRHFNALG 344
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEITEI-----FDKISYSKGSSLLRMAEHFLTT 546
ELQN + +HP V ++T+I + + Y KG +LL E L
Sbjct: 345 GWGELQNS--VKTFGETHPFTKLVV---DLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 399
Query: 547 EVLKLG-LQKYIKKKAMGSSTQAELWAFL 574
+ LG L+ Y++K + S T + FL
Sbjct: 400 PEIFLGFLKAYVEKFSYKSITTDDWKDFL 428
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPEN 421
SQ QA R PC D PS+K + + + A+ + ++DG DPE+
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPED 183
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE------YFGVDSVEHTWKIKDIF 491
++ ++AHE++H W GNLVT W+ WLNEG Y+E FG E +
Sbjct: 289 LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFG----EKFRHFNALG 344
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEITEI-----FDKISYSKGSSLLRMAEHFLTT 546
ELQN + +HP V ++T+I + + Y KG +LL E L
Sbjct: 345 GWGELQNS--VKTFGETHPFTKLVV---DLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 399
Query: 547 EVLKLG-LQKYIKKKAMGSSTQAELWAFL 574
+ LG L+ Y++K + S T + FL
Sbjct: 400 PEIFLGFLKAYVEKFSYKSITTDDWKDFL 428
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPEN 421
SQ QA R PC D PS+K + + + A+ + ++DG DPE+
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPED 183
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIE------YFGVDSVEHTWKIKDIF 491
++ ++AH+++H W GNLVT W+ WLNEG Y+E FG E +
Sbjct: 295 LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFG----EKFRHFNALG 350
Query: 492 VVDELQNVFFLDALKSSHPVHVEVSHPDEITEI-----FDKISYSKGSSLLRMAEHFLTT 546
ELQN + +HP V ++T+I + + Y KG +LL E L
Sbjct: 351 GWGELQNS--VKTFGETHPFTKLVV---DLTDIDPDVAYSSVPYEKGFALLFYLEQLLGG 405
Query: 547 EVLKLG-LQKYIKKKAMGSSTQAELWAFL 574
+ LG L+ Y++K + S T + FL
Sbjct: 406 PEIFLGFLKAYVEKFSYKSITTDDWKDFL 434
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 370 SQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPEN 421
SQ QA R PC D PS+K + + + A+ + ++DG DPE+
Sbjct: 139 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSA-IRDGETPDPED 189
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEY-FGVD-SVEHTWKIKDIFVVDE 495
I ++ HE H W GN VT W L L EG + + F D +I ++ +
Sbjct: 312 IERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRG 371
Query: 496 LQNVFFLDALKSSHPVHVEVSHPDEITEI---FDKISYSKGSSLLRMAEHFLTTEVLKLG 552
LQ F DA +HP+ PD + E+ + Y KG+ ++RM L E + G
Sbjct: 372 LQ--FAEDASPMAHPI-----RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKG 424
Query: 553 LQKYIKKKAMGSST 566
+Q Y ++ ++T
Sbjct: 425 MQLYFERHDGSAAT 438
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEY-FGVD-SVEHTWKIKDIFVVDE 495
I ++ HE H W GN VT W L L EG + + F D +I ++ +
Sbjct: 312 IERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRG 371
Query: 496 LQNVFFLDALKSSHPVHVEVSHPDEITEI---FDKISYSKGSSLLRMAEHFLTTEVLKLG 552
LQ F DA +HP+ PD + E+ + Y KG+ ++RM L E + G
Sbjct: 372 LQ--FAEDASPMAHPI-----RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKG 424
Query: 553 LQKYIKKKAMGSST 566
+Q Y ++ ++T
Sbjct: 425 MQLYFERHDGSAAT 438
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEY-FGVD-SVEHTWKIKDIFVVDE 495
I ++ HE H W GN VT W L L EG + + F D +I ++ +
Sbjct: 291 IERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRG 350
Query: 496 LQNVFFLDALKSSHPVHVEVSHPDEITEI---FDKISYSKGSSLLRMAEHFLTTEVLKLG 552
LQ F DA +HP+ PD + E+ + Y KG+ ++RM L E + G
Sbjct: 351 LQ--FAEDASPMAHPI-----RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKG 403
Query: 553 LQKYIKKKAMGSST 566
+Q Y ++ ++T
Sbjct: 404 MQLYFERHDGSAAT 417
>pdb|3P0S|A Chain A, Crystal Structure Of Bombyx Mori Densovirus 1 Capsid
Length = 494
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 396 SIG-RLPNMTAISNMPLKDGNQSDPENSMLYDEQISTNYHKERIATIVAHELAHQWFGNL 454
S+G RLP +T+ + + + N P +DE TNY +A I+ L +W
Sbjct: 137 SLGVRLPFVTSATTSSVANANAQYPIGCFHFDEAYETNYGINNVADIINKALGTEWKNAT 196
Query: 455 -----VTLAW 459
VT AW
Sbjct: 197 RPTAAVTTAW 206
>pdb|1VK3|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase Ii (Tm1246) From Thermotoga Maritima At 2.15 A
Resolution
Length = 615
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 467 EGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFD 526
EG A Y GV +V +I ++ + L NV +++ V + S P ++ IF
Sbjct: 132 EGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLAAGVVRNDXLVDSKASRPGQVIVIFG 191
Query: 527 KISYSKGSSLLRMAEHFLTTE-VLKLGLQ 554
+ G A LT + KL +Q
Sbjct: 192 GATGRDGIHGASFASEDLTGDKATKLSIQ 220
>pdb|2WLQ|A Chain A, Nucleophile-Disabled Lam16a Mutant Holds Laminariheptaose
( L7) In A Cyclical Conformation
pdb|2WNE|A Chain A, Mutant Laminarinase 16a Cyclizes Laminariheptaose
Length = 298
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 484 TWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHF 543
T+ ++D +V + F +A+ + P H V++ D+ T + ++Y+ G +L+ A+H
Sbjct: 2 TYHLEDNWVGSAFLSTFTHEAI--ADPTHGRVNYVDQATALAKNLTYASGDTLILRADHT 59
Query: 544 LT 545
T
Sbjct: 60 TT 61
>pdb|2CL2|A Chain A, Endo-1,3(4)-Beta-Glucanase From Phanerochaete
Chrysosporium, Solved Using Native Sulfur Sad,
Exhibiting Intact Heptasaccharide Glycosylation
pdb|2W39|A Chain A, Glc(Beta-1-3)glc Disaccharide In -1 And -2 Sites Of
Laminarinase 16a From Phanerochaete Chrysosporium
pdb|2W52|A Chain A, 2 Beta-Glucans (6-O-Glucosyl-Laminaritriose) In Both Donor
And Acceptor Sites Of Gh16 Laminarinase 16a From
Phanerochaete Chrysosporium
Length = 298
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 484 TWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHF 543
T+ ++D +V + F +A+ + P H V++ D+ T + ++Y+ G +L+ A+H
Sbjct: 2 TYHLEDNWVGSAFLSTFTHEAI--ADPTHGRVNYVDQATALAKNLTYASGDTLILRADHT 59
Query: 544 LT 545
T
Sbjct: 60 TT 61
>pdb|4GLW|A Chain A, Dna Ligase A In Complex With Inhibitor
pdb|4GLW|B Chain B, Dna Ligase A In Complex With Inhibitor
Length = 305
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 569 ELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKKAMGSSTQAELWA 614
E+W F+ G E LP +D + + + ++ +G + +A WA
Sbjct: 253 EIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWA 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,578,858
Number of Sequences: 62578
Number of extensions: 1215181
Number of successful extensions: 2701
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2515
Number of HSP's gapped (non-prelim): 115
length of query: 947
length of database: 14,973,337
effective HSP length: 108
effective length of query: 839
effective length of database: 8,214,913
effective search space: 6892312007
effective search space used: 6892312007
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)