Query psy1463
Match_columns 947
No_of_seqs 388 out of 3078
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:37:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046|consensus 100.0 8.2E-94 1.8E-98 886.6 48.6 559 230-856 27-761 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 1.5E-76 3.2E-81 733.5 50.7 531 237-855 13-719 (831)
3 COG0308 PepN Aminopeptidase N 100.0 3.8E-55 8.3E-60 542.5 42.5 498 236-816 15-684 (859)
4 TIGR02411 leuko_A4_hydro leuko 100.0 2.5E-54 5.5E-59 516.2 33.0 322 234-577 7-421 (601)
5 TIGR02414 pepN_proteo aminopep 100.0 1.6E-51 3.4E-56 504.8 49.1 344 235-664 4-460 (863)
6 PRK14015 pepN aminopeptidase N 100.0 1.5E-51 3.3E-56 506.3 48.9 348 230-664 12-473 (875)
7 PF01433 Peptidase_M1: Peptida 100.0 7.2E-51 1.6E-55 467.1 26.6 289 233-533 1-390 (390)
8 KOG1047|consensus 100.0 4.4E-40 9.5E-45 367.3 27.2 326 235-580 13-433 (613)
9 PF11838 ERAP1_C: ERAP1-like C 99.9 1.2E-24 2.6E-29 243.5 10.8 186 665-856 9-221 (324)
10 KOG1932|consensus 99.9 2.9E-21 6.4E-26 230.4 24.9 312 240-559 27-479 (1180)
11 KOG1046|consensus 99.8 2.7E-19 5.9E-24 223.1 6.2 105 828-932 208-313 (882)
12 TIGR02414 pepN_proteo aminopep 99.5 1.7E-15 3.8E-20 187.4 3.0 108 826-933 161-272 (863)
13 TIGR02412 pepN_strep_liv amino 99.5 2.4E-15 5.2E-20 187.9 2.0 102 828-931 173-276 (831)
14 PRK14015 pepN aminopeptidase N 99.4 2.1E-14 4.5E-19 178.5 1.7 106 827-932 175-284 (875)
15 PF01433 Peptidase_M1: Peptida 99.4 3.2E-14 7E-19 163.7 3.0 105 826-930 177-281 (390)
16 COG0308 PepN Aminopeptidase N 99.4 1.5E-13 3.2E-18 172.0 3.0 111 827-938 188-301 (859)
17 TIGR02411 leuko_A4_hydro leuko 99.1 4E-11 8.6E-16 144.8 5.3 95 830-930 177-273 (601)
18 PF13485 Peptidase_MA_2: Pepti 99.1 1.2E-10 2.7E-15 111.5 6.7 108 434-556 21-128 (128)
19 KOG1047|consensus 97.9 9.7E-06 2.1E-10 93.2 5.5 88 832-924 188-277 (613)
20 COG3975 Predicted protease wit 97.4 0.0013 2.8E-08 76.1 12.1 153 420-577 228-411 (558)
21 PF10460 Peptidase_M30: Peptid 96.5 0.015 3.3E-07 65.8 10.6 124 435-575 136-265 (366)
22 PF07607 DUF1570: Protein of u 94.9 0.016 3.5E-07 56.2 2.3 39 440-478 3-43 (128)
23 PF04450 BSP: Peptidase of pla 90.9 1.2 2.5E-05 47.1 9.2 102 435-576 93-195 (205)
24 PF05299 Peptidase_M61: M61 gl 90.1 0.15 3.3E-06 49.1 1.6 44 438-481 4-58 (122)
25 COG4324 Predicted aminopeptida 82.5 1.4 3.1E-05 47.2 4.0 42 434-481 193-234 (376)
26 PF10023 DUF2265: Predicted am 81.7 1.6 3.5E-05 49.1 4.3 41 435-481 162-202 (337)
27 PF10989 DUF2808: Protein of u 73.9 7.5 0.00016 38.8 6.1 50 303-355 73-122 (146)
28 PF10026 DUF2268: Predicted Zn 73.8 7 0.00015 40.9 6.1 49 434-482 61-113 (195)
29 PF12315 DUF3633: Protein of u 59.1 12 0.00026 39.3 4.2 41 439-481 94-134 (212)
30 KOG1932|consensus 51.0 14 0.00029 47.4 3.6 90 838-929 240-329 (1180)
31 PF04234 CopC: CopC domain; I 39.9 41 0.00089 30.9 4.2 59 272-344 19-80 (97)
32 COG2719 SpoVR Uncharacterized 33.5 1E+02 0.0022 36.1 6.6 84 441-542 252-336 (495)
33 PF10263 SprT-like: SprT-like 33.1 32 0.0007 34.3 2.6 19 434-452 56-74 (157)
34 PF12725 DUF3810: Protein of u 32.4 38 0.00081 38.4 3.2 32 438-481 196-227 (318)
35 smart00731 SprT SprT homologue 31.4 32 0.0007 34.2 2.2 18 435-452 56-73 (146)
36 PF13574 Reprolysin_2: Metallo 31.3 30 0.00064 35.5 2.0 13 438-450 111-123 (173)
37 PF08325 WLM: WLM domain; Int 29.9 34 0.00074 35.6 2.1 21 433-453 77-97 (186)
38 TIGR02059 swm_rep_I cyanobacte 28.5 3.3E+02 0.0071 25.5 7.9 39 303-344 59-97 (101)
39 PF06114 DUF955: Domain of unk 26.5 47 0.001 30.6 2.3 20 436-455 40-59 (122)
40 KOG2661|consensus 24.4 50 0.0011 37.1 2.2 22 433-454 270-291 (424)
41 PRK04860 hypothetical protein; 24.3 39 0.00084 34.4 1.3 18 434-451 59-76 (160)
42 PF10772 DUF2597: Protein of u 24.2 56 0.0012 31.8 2.3 27 105-131 102-130 (134)
43 PHA02456 zinc metallopeptidase 23.1 49 0.0011 31.2 1.6 15 436-450 77-91 (141)
44 PRK10301 hypothetical protein; 22.0 2.3E+02 0.005 27.5 6.1 24 317-344 84-107 (124)
No 1
>KOG1046|consensus
Probab=100.00 E-value=8.2e-94 Score=886.62 Aligned_cols=559 Identities=42% Similarity=0.760 Sum_probs=507.9
Q ss_pred CCCCCCCCceeeEEEEEEEeeccCCCeEEEEEEEEEEEEecCCCEEEEEcCCcEEEEEEeeeccccccCcCCCCCceeee
Q psy1463 230 FNGRLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRSANWESDEGTSLTI 309 (947)
Q Consensus 230 ~~~rLP~~v~P~hY~L~L~~d~~~~~~~f~G~v~I~~~~~~~t~~I~Lha~~L~I~~v~i~~~~~~~~~~~~~~g~~i~~ 309 (947)
..+|||+.+.|+||+|.|.|++ .. .+|.|++.|.+++.++++.|+||+.++.|.++.+.... ..+.....
T Consensus 27 ~~~rLP~~v~P~~Y~l~l~~~l-~~-~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~--------~~~~~~~~ 96 (882)
T KOG1046|consen 27 NEYRLPTNVVPLHYDLTLKPDL-EE-FTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRP--------SSGSVQLE 96 (882)
T ss_pred ccccCCCCCCCceeEEEEecCC-cC-CcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecC--------CCCccccc
Confidence 5789999999999999999999 77 88999999999999999999999999999999986531 01111111
Q ss_pred eeEEecCCCcEEEEEecCcccCCCCeEEEEEEEEEEecCCcCccccccccc-ccceeEEEEeeccccCcCCcCccCCCCC
Q psy1463 310 GQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRSSYEV-NNTKRWIMASQFQATDARRAFPCFDEPS 388 (947)
Q Consensus 310 ~~~~~~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g~i~~~~~G~y~s~y~~-~g~~~~~~~Tq~ep~~AR~~FPCfDeP~ 388 (947)
.........+.+.+.+++ ++.+|.+|+|+|.|.|++++++.|||+++|.+ .+..+++++|||||++||++|||||||+
T Consensus 97 ~~~~~~~~~~~l~~~~~~-~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~ 175 (882)
T KOG1046|consen 97 VSVEEKEQEETLVFPLNE-TLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPA 175 (882)
T ss_pred ccccccccceEEEEEccc-ccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCccc
Confidence 111111111788999999 99999999999999999999999999999985 5666899999999999999999999999
Q ss_pred CcceEEEEEEecCceeEEecCCcccCCC--CC------------------------------------------------
Q psy1463 389 LKAKFAISIGRLPNMTAISNMPLKDGNQ--SD------------------------------------------------ 418 (947)
Q Consensus 389 ~KAtF~itIt~P~~~~alSN~~~~~~~~--~g------------------------------------------------ 418 (947)
+||+|.|+|.||++++|+|||++.++.. +|
T Consensus 176 ~KAtF~Itl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~ 255 (882)
T KOG1046|consen 176 FKATFTITLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQ 255 (882)
T ss_pred ccCceEEEEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhH
Confidence 9999999999999999999999876654 32
Q ss_pred -------------------------------------------------CcccccccCCCCcchhhHHHHHHHHHHHHHH
Q psy1463 419 -------------------------------------------------PENSMLYDEQISTNYHKERIATIVAHELAHQ 449 (947)
Q Consensus 419 -------------------------------------------------~E~~lL~~~~~s~~~~~~~i~~viaHElAHQ 449 (947)
+|..+||++..++..++++++.+||||+|||
T Consensus 256 ~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQ 335 (882)
T KOG1046|consen 256 GQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQ 335 (882)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 6677899998888999999999999999999
Q ss_pred hhcCccccccCCchhHhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhhhcccCCCCeeeccCCchhhhhhccccc
Q psy1463 450 WFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKIS 529 (947)
Q Consensus 450 WFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~~i~~~F~~i~ 529 (947)
||||+|||+||+|+|||||||+|+++++++..+|+|.++++|+...+..++..|++.++||+..++.++.+|.+.|+.++
T Consensus 336 WFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~ 415 (882)
T KOG1046|consen 336 WFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEIS 415 (882)
T ss_pred HhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhccccccCcchhhHHhhhHHHHHhhccCCChhh
Q psy1463 530 YSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKKAMGSSTQ 609 (947)
Q Consensus 530 Y~KGa~vL~ML~~~lGee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 609 (947)
|.||++|||||+.++|++.|++||+.||.+|+|+|++++|||++|+..
T Consensus 416 Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~-------------------------------- 463 (882)
T KOG1046|consen 416 YQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEG-------------------------------- 463 (882)
T ss_pred hhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhcc--------------------------------
Confidence 999999999999999999999999999999999999999999999865
Q ss_pred HHHHHHHhhcccccccCCCCCchhhhhccccccCCCcEEEEEEeCCCceEEEEEe-------------------------
Q psy1463 610 AELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQV------------------------- 664 (947)
Q Consensus 610 ~~~w~~~~~~~~~~~~l~~~~dl~~~~~~W~~q~G~Pvv~v~~~~~~~~i~i~Q~------------------------- 664 (947)
.+.|++++|++|+.|+|||+|+|+++++ .++++|+
T Consensus 464 ------------------~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~--~~~l~Q~rf~~~~~~~~~~~~w~iPl~~~~~~ 523 (882)
T KOG1046|consen 464 ------------------SGLDVSELMDTWTKQMGYPVVTVERNGD--SLTLTQERFLSDPDPSEDNYLWWIPLTYTTSG 523 (882)
T ss_pred ------------------CCCCHHHHHhhhhcCCCCceEEEEecCC--EEEEehhhhccCCCccccCcccceeEEEEcCC
Confidence 6889999999999999999999999995 7888886
Q ss_pred -------------------------------eeeEEEEcCHHHHHHHHHHHccCCCCCCCChhcHHHHHHHHHHHHHcCC
Q psy1463 665 -------------------------------RGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGL 713 (947)
Q Consensus 665 -------------------------------~GyYRV~Yd~~~w~~i~~~L~~~~~~~~i~~~~Ra~LidD~~~la~~g~ 713 (947)
.|||||+||+++|..|+++|. . +..+++.+|++||+|+++|+++|+
T Consensus 524 ~~~~~~~~~~~~~~~~~l~~~~~wi~~N~~~~g~yRV~Yd~~~w~~l~~~l~--~-~~~~~~~~Ra~li~D~~~la~~~~ 600 (882)
T KOG1046|consen 524 SGSVPKFWLSSKSTTIKLPESDQWIKVNLEQTGYYRVNYDDENWALLIEQLK--N-HESLSVIDRAQLINDAFALARAGR 600 (882)
T ss_pred CCccceeeecCCCcceecCCCCeEEEEeCCcceEEEEEeCHHHHHHHHHHHh--h-cCccCHhHHHHHHHHHHHHHhcCC
Confidence 799999999999999999998 6 899999999999999999999999
Q ss_pred ccHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q psy1463 714 LDYKIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAYFDKYKKYLLHIIRPMYESIGFDGSPKDDQMTVYKRVDVL 793 (947)
Q Consensus 714 l~~~~~l~ll~yL~~E~~~~~w~~~~~~l~~l~~~l~~~~~~~~fk~y~~~Ll~~~y~klgw~~~~~~s~~~~~lR~~il 793 (947)
++++.+|+++.||.+|++|.||..+...|..+.. +...+.+..++.|+.+++.+.+++++|.....++ ....+|..++
T Consensus 601 ~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 678 (882)
T KOG1046|consen 601 LPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LEDTEIYSKFKEFVKKLILPIFEKLGWSDGADSS-LDNMLRVSVL 678 (882)
T ss_pred CchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-cccchHHHHHHHHHHHHHHHHHHHhcCCccccch-hHHHHHHHHH
Confidence 9999999999999999999999999999999988 7778899999999999999999999998743333 7899999999
Q ss_pred HHHHHcCChhHHHHHHhhhhhhccC----C-cc--------ccccCcceEEEeeccchH-------HHHHHHHhcccccc
Q psy1463 794 NRACILGLKDCVQKALSKYQNWISN----P-SK--------IERTGPYVWDHFQETVFM-------STYLVAMAVTDFSH 853 (947)
Q Consensus 794 ~~AC~~g~~~Ci~~A~~~F~~~l~~----P-d~--------i~~g~~~~w~~~~~t~~~-------styL~AL~~s~~~~ 853 (947)
..||..|+++|.+.|..+|..|... | +. ++.|++..|+.+++.+++ ..++.||+|+++..
T Consensus 679 ~~a~~~~~~~~~~~a~~~f~~~~~~~~~ip~~lr~~vy~~~~~~g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~ 758 (882)
T KOG1046|consen 679 SFACRFGHEECLKKAVELFRQWLAGTNPIPPDLREVVYCTAVQFGTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPW 758 (882)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhcCCCCChhhhhhhhhHHHHhcCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHH
Confidence 9999999999999999999999865 3 33 678888999999988876 68899999999875
Q ss_pred eee
Q psy1463 854 RVH 856 (947)
Q Consensus 854 ~~~ 856 (947)
.+.
T Consensus 759 ~l~ 761 (882)
T KOG1046|consen 759 LLQ 761 (882)
T ss_pred HHH
Confidence 443
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.5e-76 Score=733.53 Aligned_cols=531 Identities=23% Similarity=0.287 Sum_probs=434.6
Q ss_pred CceeeEEEEEEEeeccCC-CeEEEEEEEEEEEEecCCCEEEEEcCCcEEEEEEeeeccccccCcCCCCCceeeeeeEEec
Q psy1463 237 GVKPLAYKIKILPFLIEN-NFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRSANWESDEGTSLTIGQVRND 315 (947)
Q Consensus 237 ~v~P~hY~L~L~~d~~~~-~~~f~G~v~I~~~~~~~t~~I~Lha~~L~I~~v~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 315 (947)
.+.+.||+|+|++.. +. ...+.|+++|+|+++++++.|.||+.++.|.+|.+ +|. ++. .. .
T Consensus 13 ~~~~~~Y~l~l~l~~-~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~v-------------ng~-~~~-~~--~ 74 (831)
T TIGR02412 13 LITVEHYEIALDLTG-ADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTL-------------NGI-LDV-AP--V 74 (831)
T ss_pred hccceeEEEEEEccC-CccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEE-------------CCc-ccC-cc--c
Confidence 367899999999875 33 24569999999999998999999999999999998 454 211 11 1
Q ss_pred CCCcEEEEEecCcccCCCCeEEEEEEEEEEecCCcCcccccccccccceeEEEEeeccccCcCCcCccCCCCCCcceEEE
Q psy1463 316 TINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAI 395 (947)
Q Consensus 316 ~~~~~L~I~L~~~~L~~G~~y~L~I~y~g~i~~~~~G~y~s~y~~~g~~~~~~~Tq~ep~~AR~~FPCfDeP~~KAtF~i 395 (947)
.++ ..|.++. |.+| .++|+|.|.+.+.+...|+|+..+..+| .++++|||||.+||+||||||+|++||+|++
T Consensus 75 ~~~--~~i~l~~--l~~g-~~~l~i~~~~~~~~~~~Gl~~~~~~~~g--~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~l 147 (831)
T TIGR02412 75 YDG--SRIPLPG--LLTG-ENTLRVEATRAYTNTGEGLHRFVDPVDG--EVYLYTQFEPADARRVFAVFDQPDLKANFKF 147 (831)
T ss_pred cCC--CEEEccC--CCCC-ceEEEEEEEEEecCCCceEEEEEeCCCC--eEEEEECCCCcCceeeEecCCCCCCceeEEE
Confidence 122 3467764 7778 4899999999999889999985443344 3778999999999999999999999999999
Q ss_pred EEEecCceeEEecCCcccCCC-CC--------------------------------------------------------
Q psy1463 396 SIGRLPNMTAISNMPLKDGNQ-SD-------------------------------------------------------- 418 (947)
Q Consensus 396 tIt~P~~~~alSN~~~~~~~~-~g-------------------------------------------------------- 418 (947)
+|++|++|+|+|||++.+... +|
T Consensus 148 tit~p~~~~v~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~ 227 (831)
T TIGR02412 148 SVKAPEDWTVISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTI 227 (831)
T ss_pred EEEECCCceEECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHH
Confidence 999999999999998754432 11
Q ss_pred ---------------------------------Ccccc--cccC-----CCCcchhhHHHHHHHHHHHHHHhhcCccccc
Q psy1463 419 ---------------------------------PENSM--LYDE-----QISTNYHKERIATIVAHELAHQWFGNLVTLA 458 (947)
Q Consensus 419 ---------------------------------~E~~l--L~~~-----~~s~~~~~~~i~~viaHElAHQWFGnlVT~~ 458 (947)
||+.. .|.+ ...+...++.+..+|+||+|||||||+|||+
T Consensus 228 ~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~ 307 (831)
T TIGR02412 228 TRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMR 307 (831)
T ss_pred HHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCcccccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccc
Confidence 44331 1111 1122345667789999999999999999999
Q ss_pred cCCchhHhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhhhcccCCCCeeeccCCchhhhhhccccccchHHHHHH
Q psy1463 459 WWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLR 538 (947)
Q Consensus 459 ~W~d~WLnEGfAtY~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~~i~~~F~~i~Y~KGa~vL~ 538 (947)
||+|+|||||||+|++++++++.+|.|..+..|.......++..|+..++||+..++.++.++...|+.++|.||++||+
T Consensus 308 wW~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~ 387 (831)
T TIGR02412 308 WWNDLWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLK 387 (831)
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHH
Confidence 99999999999999999999999998888888888788888999999999999988888888889999999999999999
Q ss_pred HHHhhhCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhccccccCcchhhHHhhhHHHHHhhccCCChhhHHHHHHHhh
Q psy1463 539 MAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKKAMGSSTQAELWAFLTN 618 (947)
Q Consensus 539 ML~~~lGee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~w~~~~~ 618 (947)
||+.+||++.|+++||.|+++|+|+|++++|||++++++
T Consensus 388 mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~----------------------------------------- 426 (831)
T TIGR02412 388 QLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKA----------------------------------------- 426 (831)
T ss_pred HHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-----------------------------------------
Confidence 999999999999999999999999999999999999998
Q ss_pred cccccccCCCCCchhhhhccccccCCCcEEEEEEeCCCceEE------------------------------------EE
Q psy1463 619 AGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSAV------------------------------------VK 662 (947)
Q Consensus 619 ~~~~~~~l~~~~dl~~~~~~W~~q~G~Pvv~v~~~~~~~~i~------------------------------------i~ 662 (947)
+|.++++||++|+.|+|+|+|+|++.++++.+. +.
T Consensus 427 ---------sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 497 (831)
T TIGR02412 427 ---------SGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPESSGPPRPHRIAIGLYDLDRDDLRRTTLVPLTIS 497 (831)
T ss_pred ---------hCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEecCCCCCCeeEEEeeeecCCCcceeeeEEEEEEe
Confidence 788999999999999999999987754322111 10
Q ss_pred E----------------------eeeeEEEEcCHHHHHHHHHHHccCCCCCCCChhcHHHHHHHHHHHHHcCCccHHHHH
Q psy1463 663 Q----------------------VRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIAL 720 (947)
Q Consensus 663 Q----------------------~~GyYRV~Yd~~~w~~i~~~L~~~~~~~~i~~~~Ra~LidD~~~la~~g~l~~~~~l 720 (947)
+ ..|||||+||+++|..|+++|. . ..++.+|++|++|+|+++++|.++++.+|
T Consensus 498 ~~~~~~~~~~~~~~~~~v~~N~~~~gyyrv~yd~~~~~~l~~~l~--~---~~~~~~R~~l~~d~~~~~~~g~~~~~~~l 572 (831)
T TIGR02412 498 GERTAVPQLVGKRAPALVLLNDDDLTYAKVRLDPTSFDTVLAALS--K---LPDPLSRAVVWASLWDSVRDGELSPDDYL 572 (831)
T ss_pred cCceeehhhcCCCCCCEEEEeCCCcEEEEEECCHHHHHHHHHHhh--h---CCChhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 0 0899999999999999999997 2 23899999999999999999999999999
Q ss_pred HHH-hhcccCCchhHHHHHHHHHH-HHHHhhhcchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy1463 721 DVT-AYLQYETELVPWRSAMQALG-YIEGQLYRRAYFDKYKKYLLHIIRPMYESIGFDGSPKDDQMTVYKRVDVLNRACI 798 (947)
Q Consensus 721 ~ll-~yL~~E~~~~~w~~~~~~l~-~l~~~l~~~~~~~~fk~y~~~Ll~~~y~klgw~~~~~~s~~~~~lR~~il~~AC~ 798 (947)
+++ .||++|+++.||..++..+. .+..++...+.+..++.|+..++.+.... .+++.+.+++. +..+||.
T Consensus 573 ~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~ 644 (831)
T TIGR02412 573 STVFAHVPSETDYAVVQQVLSQLLRAVAAQYAPIADRPALLAVAALACRSLRRA-------MESGPDFQLRW-LRALALT 644 (831)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-------cCCCccHHHHH-HHHHHHh
Confidence 966 79999999999999999999 88888866677888999998888764321 22223334433 5557999
Q ss_pred cCChhHHHHHHhhhhhhccC----Ccc-------ccccCcceEEEeeccchH-------HHHHHHHhccccccee
Q psy1463 799 LGLKDCVQKALSKYQNWISN----PSK-------IERTGPYVWDHFQETVFM-------STYLVAMAVTDFSHRV 855 (947)
Q Consensus 799 ~g~~~Ci~~A~~~F~~~l~~----Pd~-------i~~g~~~~w~~~~~t~~~-------styL~AL~~s~~~~~~ 855 (947)
.|++.|++.++.+|+.++.+ ||+ +..++...|+.+++.+.. ..+|.||+|..++.+.
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~ 719 (831)
T TIGR02412 645 ATDPDSLRRLLSLLDGKIKGLALDPDLRWRIIARLAALGFIDADDIAAELERDNTASGEEHAAAARAARPDAAAK 719 (831)
T ss_pred cCCHHHHHHHHHHHhCCCCCcccCHhHHHHHHHHHHhcCCCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHH
Confidence 99999999999999988654 444 334566677666655543 5699999999887644
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-55 Score=542.46 Aligned_cols=498 Identities=30% Similarity=0.463 Sum_probs=382.9
Q ss_pred CCcee-eE--EEEEEEeeccCC-CeEEEEEEEEEEEE--ecCCCEEEEEcCCcEEEEEEeeeccccccCcCCCCCceeee
Q psy1463 236 TGVKP-LA--YKIKILPFLIEN-NFTFLGEVWIHVEV--SQTTNNITLHMNDLTILERSIKQVDNRSANWESDEGTSLTI 309 (947)
Q Consensus 236 ~~v~P-~h--Y~L~L~~d~~~~-~~~f~G~v~I~~~~--~~~t~~I~Lha~~L~I~~v~i~~~~~~~~~~~~~~g~~i~~ 309 (947)
..+.| .+ |+++|++++ .. ..+|+|+++|++.. ..+...|+||+.+|+|.++++ +|.....
T Consensus 15 ~~~~~~~~~i~~~~Ld~~~-~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~i-------------dg~~~~~ 80 (859)
T COG0308 15 LDYRPPEYAIYDIDLDLDL-DPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKI-------------DGKALTA 80 (859)
T ss_pred ccCCCccccccceEEEeee-cCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEE-------------cCccccc
Confidence 33444 66 777777666 32 27999999999987 334445999999999999999 4443322
Q ss_pred eeEEecCCCcEEEEEecCc-ccC---CCCeEEEEEEEEEEec-CCcCcccccccccccceeEEEEeeccccCcCCcCccC
Q psy1463 310 GQVRNDTINQFMVFELEDE-QFW---ATKRYVLYIKYVGKLN-DQMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCF 384 (947)
Q Consensus 310 ~~~~~~~~~~~L~I~L~~~-~L~---~G~~y~L~I~y~g~i~-~~~~G~y~s~y~~~g~~~~~~~Tq~ep~~AR~~FPCf 384 (947)
.+..+ .+.+.+..... ++. ++ .+.+.+.+.+... +.+.|+|++.+.. .++++||||+.+||+||||+
T Consensus 81 -~~~~~--~~~~~i~~~~~~~~~~~~~~-~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~ 152 (859)
T COG0308 81 -WYRLD--GDALTITVAPPIPERSERPF-TLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCI 152 (859)
T ss_pred -ccccc--CccceeeeccccccccCCCc-cEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecC
Confidence 12223 33333433220 222 33 3677777777666 5688999876542 67889999999999999999
Q ss_pred CCCCCcceEEEEEEecCceeEEecCCcccCCC--CC--------------------------------------------
Q psy1463 385 DEPSLKAKFAISIGRLPNMTAISNMPLKDGNQ--SD-------------------------------------------- 418 (947)
Q Consensus 385 DeP~~KAtF~itIt~P~~~~alSN~~~~~~~~--~g-------------------------------------------- 418 (947)
|+|+.||+|+++|..++++.++|||+...... +|
T Consensus 153 D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~ 232 (859)
T COG0308 153 DEPDVKATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYV 232 (859)
T ss_pred CCCCCcceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEe
Confidence 99999999999999999999999999866554 22
Q ss_pred ----------------------------------------------Cccc---------ccccCCCCcchhhHHHHHHHH
Q psy1463 419 ----------------------------------------------PENS---------MLYDEQISTNYHKERIATIVA 443 (947)
Q Consensus 419 ----------------------------------------------~E~~---------lL~~~~~s~~~~~~~i~~via 443 (947)
||+. +|.++..++....++++.+|+
T Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~via 312 (859)
T COG0308 233 PPGVLDRAKYALDETKRSIEFYEEYFGLPYALPIDIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIA 312 (859)
T ss_pred cCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcccEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHH
Confidence 4443 455555566667788999999
Q ss_pred HHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhhcc-ccchhhHHHHHHHHHHHhhhcccCCCCeeeccCCchhhh
Q psy1463 444 HELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEH-TWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEIT 522 (947)
Q Consensus 444 HElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~-~~~~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~~i~ 522 (947)
||+|||||||+|||+||+++|||||||+|++..+.+.++| +|..++.+.......++..|+...+||+...+.++.+++
T Consensus 313 HElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~ 392 (859)
T COG0308 313 HELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEIN 392 (859)
T ss_pred HHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchh
Confidence 9999999999999999999999999999999999999999 888888887766666899999999999999999999999
Q ss_pred hhccccccchHHHHHHHHHhhhCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhccccccCcchhhHHhhhHHHHHhhc
Q psy1463 523 EIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKK 602 (947)
Q Consensus 523 ~~F~~i~Y~KGa~vL~ML~~~lGee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 602 (947)
..||.++|.||++|+|||+.++|++.|+++|+.|+++|++++++++|||++++++
T Consensus 393 ~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~------------------------- 447 (859)
T COG0308 393 DFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDA------------------------- 447 (859)
T ss_pred hhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999999998
Q ss_pred cCCChhhHHHHHHHhhcccccccCCCCCchhhhhccccccCCCcEEEEEEeCCC-ceEEEEEe-----------------
Q psy1463 603 AMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDA-GSAVVKQV----------------- 664 (947)
Q Consensus 603 ~~~~~~~~~~w~~~~~~~~~~~~l~~~~dl~~~~~~W~~q~G~Pvv~v~~~~~~-~~i~i~Q~----------------- 664 (947)
+|.|++.+|++|+.|+|+|++.|+..+++ .++.++|-
T Consensus 448 -------------------------sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~~~l~~~q~~~~~~~~~~~~~iPl~~ 502 (859)
T COG0308 448 -------------------------SGKDLSAFFESWLSQAGYPVLTVSVRYDDFFKLTQKQFTPPGQEEKRPWPIPLAI 502 (859)
T ss_pred -------------------------hCCcHHHHHHHHHhCCCCCceeeeeeccccEEEEEEEeccCCCccCceeeeccEE
Confidence 89999999999999999999999998863 22333332
Q ss_pred ---------------------------------------eeeEEEEcCHHHHHHHHHHHccCCCCCCCChhcHHHHHHHH
Q psy1463 665 ---------------------------------------RGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDA 705 (947)
Q Consensus 665 ---------------------------------------~GyYRV~Yd~~~w~~i~~~L~~~~~~~~i~~~~Ra~LidD~ 705 (947)
.|+|++.|+.+.|..+++... .+....|+.++.|.
T Consensus 503 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~~~~~------~~~~~~~~~~~~~~ 576 (859)
T COG0308 503 KLLDGGGVKVLLLTEGEQTVTFELVGIPPFPSLKVNDSAPVFYRVDYSDQSLSKLLQHDP------RLEAAQRLALVADR 576 (859)
T ss_pred EecCCCCceeeeeeccceEEEEecccCCccceeeccCCccceEEEecCHHHHHHHHhhhh------hhhHHHHHhhhhhH
Confidence 579999999999988865432 78999999999999
Q ss_pred HHHHHcCCccHHHHHHHHhhcccCC-chhHHHHHHHHH-HHHHHhhhcchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCH
Q psy1463 706 MNLARAGLLDYKIALDVTAYLQYET-ELVPWRSAMQAL-GYIEGQLYRRAYFDKYKKYLLHIIRPMYESIGFDGSPKDDQ 783 (947)
Q Consensus 706 ~~la~~g~l~~~~~l~ll~yL~~E~-~~~~w~~~~~~l-~~l~~~l~~~~~~~~fk~y~~~Ll~~~y~klgw~~~~~~s~ 783 (947)
.++..+|..+...++..+...-.+. .+....+++..+ ..|.... ..+ ..+.......+...+.++++.... ++.
T Consensus 577 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 652 (859)
T COG0308 577 RALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFA-DLE--KFIDPDAIDQLRDALVRLGAEAVA-DDL 652 (859)
T ss_pred HHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccch-hhh--hhcCHHHHHHHHHHHHHHHHHhhc-chH
Confidence 9999999999999888877554444 444334333332 2222111 111 455666677777777777776422 222
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHhhhhhhc
Q psy1463 784 MTVYKRVDVLNRACILGLKDCVQKALSKYQNWI 816 (947)
Q Consensus 784 ~~~~lR~~il~~AC~~g~~~Ci~~A~~~F~~~l 816 (947)
...+....+ +-+|......+......+|.++-
T Consensus 653 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 684 (859)
T COG0308 653 LALYHIGAL-SQSLYEEDASLAALRALRNACLE 684 (859)
T ss_pred HHHHHhhhh-ccccccccHHHHHHHHHHHHHHh
Confidence 222222222 56666777777777766766553
No 4
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.5e-54 Score=516.23 Aligned_cols=322 Identities=23% Similarity=0.266 Sum_probs=245.6
Q ss_pred CCCCceeeEEEEEEEeeccCCCeEEEEEEEEEEEEecC-CCEEEEEcCCcEEEEEEeeeccccccCcCCCCCceeeeee-
Q psy1463 234 LPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQT-TNNITLHMNDLTILERSIKQVDNRSANWESDEGTSLTIGQ- 311 (947)
Q Consensus 234 LP~~v~P~hY~L~L~~d~~~~~~~f~G~v~I~~~~~~~-t~~I~Lha~~L~I~~v~i~~~~~~~~~~~~~~g~~i~~~~- 311 (947)
=|..+.|.||+|+|++|+ ++ .+|+|+|+|++++.++ ++.|+||+.+|+|.+|.+ +|+.++...
T Consensus 7 n~~~~~~~hy~L~L~vd~-~~-~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v-------------~g~~~~~~~~ 71 (601)
T TIGR02411 7 NYKDFRTSHTDLNLSVDF-TK-RKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTI-------------NGLPADFAIG 71 (601)
T ss_pred CCCCcEEEEEEEEEEEee-cC-CEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEE-------------CCcccceEec
Confidence 377899999999999999 77 8999999999999765 588999999999999987 344432211
Q ss_pred EEecCCCcEEEEEecCcccCCCCeEEEEEEEEEEecCCcCcccccccc-cccceeEEEEeeccccCcCCcCccCCCCCCc
Q psy1463 312 VRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRSSYE-VNNTKRWIMASQFQATDARRAFPCFDEPSLK 390 (947)
Q Consensus 312 ~~~~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g~i~~~~~G~y~s~y~-~~g~~~~~~~Tq~ep~~AR~~FPCfDeP~~K 390 (947)
...+..++.|+|.++. ++.+|+.++|+|.|++.. +..|++...+. .+|..+++++|||||.+||+||||||+|++|
T Consensus 72 ~~~~~~g~~L~I~l~~-~l~~g~~~~l~I~Y~~~~--~~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~K 148 (601)
T TIGR02411 72 ERKEPLGSPLTISLPI-ATSKNKELVLNISFSTTP--KCTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVK 148 (601)
T ss_pred cccCCCCCeEEEEeCC-ccCCCceEEEEEEEeecC--CCceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccc
Confidence 1122356899999999 999999999999999975 44577644332 3566778889999999999999999999999
Q ss_pred ceEEEEEEecCceeEEecCCcccCCC-C-C--------------------------------------------------
Q psy1463 391 AKFAISIGRLPNMTAISNMPLKDGNQ-S-D-------------------------------------------------- 418 (947)
Q Consensus 391 AtF~itIt~P~~~~alSN~~~~~~~~-~-g-------------------------------------------------- 418 (947)
|+|+++|++| +.|++|+....... + +
T Consensus 149 atf~~~I~~P--~~av~sg~~~~~~~~~~~~~~F~~t~pmptYLia~avG~~~~~~~g~~~~v~~~p~~~~~~~~~~~~~ 226 (601)
T TIGR02411 149 STYTAEVESP--LPVLMSGIPDGETSNDPGKYLFKQKVPIPAYLIALASGDLASAPIGPRSSVYSEPEQLEKCQYEFEHD 226 (601)
T ss_pred eEEEEEEeeC--cceeccCCccccccCCCceEEEEeCCCcchhhheeeeccceecccCCceEEEccchhHHHHHHHHHHh
Confidence 9999999999 88886554332211 1 1
Q ss_pred ---------------------------------CcccccccCCCCcchhhHHHHHHHHHHHHHHhhcCccccccCCchhH
Q psy1463 419 ---------------------------------PENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWL 465 (947)
Q Consensus 419 ---------------------------------~E~~lL~~~~~s~~~~~~~i~~viaHElAHQWFGnlVT~~~W~d~WL 465 (947)
||+..+.-..............+||||||||||||+||++||+|+||
T Consensus 227 ~~~~l~~~e~~~~pYp~~k~d~vvlpp~f~~GgMEN~~ltf~~~~ll~~d~s~~~viaHElAHqWfGNlVT~~~W~d~WL 306 (601)
T TIGR02411 227 TENFIKTAEDLIFPYEWGQYDLLVLPPSFPYGGMENPNLTFATPTLIAGDRSNVDVIAHELAHSWSGNLVTNCSWEHFWL 306 (601)
T ss_pred HHHHHHHHHHhCCCCcCccceEEEecCcccccccccccceeeccccccCChhhhhhHHHHHHhhccCceeecCCchHHHH
Confidence 33322111101111122334679999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccch--hhHHHHHHHHHHHhhhcccCCCCeeeccCCch--hhhhhccccccchHHHHHHHHH
Q psy1463 466 NEGFASYIEYFGVDSVEHTWKI--KDIFVVDELQNVFFLDALKSSHPVHVEVSHPD--EITEIFDKISYSKGSSLLRMAE 541 (947)
Q Consensus 466 nEGfAtY~~~~~~~~~~~~~~~--~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~--~i~~~F~~i~Y~KGa~vL~ML~ 541 (947)
|||||+|++.+++++++|++.. ........++.++. .+...+|+...+.+.. ++...|+.++|.||+++|+|||
T Consensus 307 nEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~ 384 (601)
T TIGR02411 307 NEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESVK--TLGEDPEYTKLVVDLKDNDPDDAFSSVPYEKGFNFLFYLE 384 (601)
T ss_pred HhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHH--hhcCCCCCCcccccCCCCChhhhccccchhhHHHHHHHHH
Confidence 9999999999999999987642 11112223333332 2333344443322222 4567899999999999999999
Q ss_pred hhhC-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q psy1463 542 HFLT-TEVLKLGLQKYIKKKAMGSSTQAELWAFLTNA 577 (947)
Q Consensus 542 ~~lG-ee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~~~ 577 (947)
++|| ++.|+++||.|+++|+|++++++|||+++.++
T Consensus 385 ~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~ 421 (601)
T TIGR02411 385 QLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEY 421 (601)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999886
No 5
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=1.6e-51 Score=504.80 Aligned_cols=344 Identities=23% Similarity=0.339 Sum_probs=273.0
Q ss_pred CCCceeeEEEEEEEeeccCCCeEEEEEEEEEEEEecCCCEEEEEcCCcEEEEEEeeeccccccCcCCCCCceeeeeeEEe
Q psy1463 235 PTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRSANWESDEGTSLTIGQVRN 314 (947)
Q Consensus 235 P~~v~P~hY~L~L~~d~~~~~~~f~G~v~I~~~~~~~t~~I~Lha~~L~I~~v~i~~~~~~~~~~~~~~g~~i~~~~~~~ 314 (947)
|..+...||+|+|++++ +. ..++|+++|++++.++.+.|+||+.+|+|.+|.+ +|+.+....+
T Consensus 4 ~~~~~v~~~~L~l~l~~-~~-~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v-------------~g~~~~~~~~-- 66 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHE-EE-TVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAI-------------DGKPLAAGDY-- 66 (863)
T ss_pred CCCceEEEEEEEEEEeC-CC-eEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEE-------------CCEecCcceE--
Confidence 56688899999999998 77 8999999999998777788999999999999998 4554422223
Q ss_pred cCCCcEEEEEecCcccCCCCeEEEEEEEEEEec--CCcCcccccccccccceeEEEEeeccccCcCCcCccCCCCCCcce
Q psy1463 315 DTINQFMVFELEDEQFWATKRYVLYIKYVGKLN--DQMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAK 392 (947)
Q Consensus 315 ~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g~i~--~~~~G~y~s~y~~~g~~~~~~~Tq~ep~~AR~~FPCfDeP~~KAt 392 (947)
..+++.|+|.+. ++ .++|+|.|.+... ....|+|++.+ +++|||||.+||++|||||+|++||+
T Consensus 67 ~~~~~~L~I~~~-----~~-~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAt 132 (863)
T TIGR02414 67 QLDDETLTIASV-----PE-SFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSR 132 (863)
T ss_pred EEcCCEEEEeeC-----Cc-cEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceE
Confidence 334567877742 23 4899999987554 34789998643 47899999999999999999999999
Q ss_pred EEEEEEecCc-e-eEEecCCcccCCC--CC--------------------------------------------------
Q psy1463 393 FAISIGRLPN-M-TAISNMPLKDGNQ--SD-------------------------------------------------- 418 (947)
Q Consensus 393 F~itIt~P~~-~-~alSN~~~~~~~~--~g-------------------------------------------------- 418 (947)
|+++|++|++ | +++|||++..... +|
T Consensus 133 f~vtI~~p~~~y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~ 212 (863)
T TIGR02414 133 YTVTITADKKKYPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNK 212 (863)
T ss_pred EEEEEEECCCcceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcH
Confidence 9999999986 6 5689997654432 22
Q ss_pred ------------------------------------------Cccc---------ccccCCCCcchhhHHHHHHHHHHHH
Q psy1463 419 ------------------------------------------PENS---------MLYDEQISTNYHKERIATIVAHELA 447 (947)
Q Consensus 419 ------------------------------------------~E~~---------lL~~~~~s~~~~~~~i~~viaHElA 447 (947)
||+. +++++...+..+++.+..+||||+|
T Consensus 213 ~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHEla 292 (863)
T TIGR02414 213 DKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYF 292 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 5544 3344443344556778899999999
Q ss_pred HHhhcCccccccCCchhHhHHHHHHHHHHHHHhhcccc--chhhHHHHHHHHHHHhhhcccCCCCeeeccCCchhhhhhc
Q psy1463 448 HQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTW--KIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIF 525 (947)
Q Consensus 448 HQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~~~--~~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~~i~~~F 525 (947)
||||||+|||+||+++|||||||+|++..+.....+.. .+.+..... ..++..|+...++|+.. .+..++...|
T Consensus 293 HqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr--~~~f~~D~~p~~~Pi~~--~~~~~i~~~y 368 (863)
T TIGR02414 293 HNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLR--AHQFPEDAGPMAHPVRP--ESYVEINNFY 368 (863)
T ss_pred HHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhcccccccCCCCCC--cchhhHHhcc
Confidence 99999999999999999999999999987766655421 111111111 12455677777788753 3456677889
Q ss_pred cccccchHHHHHHHHHhhhCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhccccccCcchhhHHhhhHHHHHhhccCC
Q psy1463 526 DKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKKAMG 605 (947)
Q Consensus 526 ~~i~Y~KGa~vL~ML~~~lGee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 605 (947)
+.++|.||++|||||+..||++.|+++|+.|+++|++++++++|||++++++
T Consensus 369 ~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~a---------------------------- 420 (863)
T TIGR02414 369 TATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDA---------------------------- 420 (863)
T ss_pred chHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999999998
Q ss_pred ChhhHHHHHHHhhcccccccCCCCCchhhhhccccccCCCcEEEEEEeCCCc----eEEEEEe
Q psy1463 606 SSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAG----SAVVKQV 664 (947)
Q Consensus 606 ~~~~~~~w~~~~~~~~~~~~l~~~~dl~~~~~~W~~q~G~Pvv~v~~~~~~~----~i~i~Q~ 664 (947)
+|.|+++|+ +|+.|+|+|+|+|+++++.+ +++++|.
T Consensus 421 ----------------------sg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~ 460 (863)
T TIGR02414 421 ----------------------SGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQS 460 (863)
T ss_pred ----------------------hCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEe
Confidence 688999985 89999999999999987532 4667775
No 6
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=1.5e-51 Score=506.29 Aligned_cols=348 Identities=24% Similarity=0.346 Sum_probs=272.2
Q ss_pred CCCCCCCCceeeEEEEEEEeeccCCCeEEEEEEEEEEEE-ecCCCEEEEEcCCcEEEEEEeeeccccccCcCCCCCceee
Q psy1463 230 FNGRLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEV-SQTTNNITLHMNDLTILERSIKQVDNRSANWESDEGTSLT 308 (947)
Q Consensus 230 ~~~rLP~~v~P~hY~L~L~~d~~~~~~~f~G~v~I~~~~-~~~t~~I~Lha~~L~I~~v~i~~~~~~~~~~~~~~g~~i~ 308 (947)
.+|+ |..+...||+|+|++++ +. ..++|+++|+... .++.+.|+||+.+|+|.+|.+ +|+.+.
T Consensus 12 ~dy~-~~~~~V~h~dL~l~ld~-~~-~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v-------------~G~~~~ 75 (875)
T PRK14015 12 KDYR-PPDYLIDTVDLDFDLDP-DK-TRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLAL-------------DGQPLA 75 (875)
T ss_pred hccC-CCCeEEEEEEEEEEEcC-CC-cEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEE-------------CCEEcC
Confidence 4555 56688899999999998 77 8899999999876 466789999999999999998 566553
Q ss_pred eeeEEecCCCcEEEEEecCcccCCCCeEEEEEEEEEEecC--CcCcccccccccccceeEEEEeeccccCcCCcCccCCC
Q psy1463 309 IGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLND--QMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDE 386 (947)
Q Consensus 309 ~~~~~~~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g~i~~--~~~G~y~s~y~~~g~~~~~~~Tq~ep~~AR~~FPCfDe 386 (947)
...+.. +++.|+|.+. ++ .++|+|.|++.... ...|+|++.+ +++|||||.+||+||||+|+
T Consensus 76 ~~~~~~--~~~~L~I~~l-----~~-~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~ 139 (875)
T PRK14015 76 PSAYEL--DEEGLTIENL-----PD-RFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDR 139 (875)
T ss_pred ccceEE--cCCEEEEecC-----Cc-cEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCC
Confidence 223333 4567888732 22 38999999986643 3679998532 57899999999999999999
Q ss_pred CCCcceEEEEEEecC-ce-eEEecCCcccCCC--CC--------------------------------------------
Q psy1463 387 PSLKAKFAISIGRLP-NM-TAISNMPLKDGNQ--SD-------------------------------------------- 418 (947)
Q Consensus 387 P~~KAtF~itIt~P~-~~-~alSN~~~~~~~~--~g-------------------------------------------- 418 (947)
|++||+|+++|++|+ .| +++|||++.+... +|
T Consensus 140 P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy 219 (875)
T PRK14015 140 PDVLARYTVRIEADKAKYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIY 219 (875)
T ss_pred CCCCeeEEEEEEEccccCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEE
Confidence 999999999999999 48 6799999766542 22
Q ss_pred ------------------------------------------------Cccc---------ccccCCCCcchhhHHHHHH
Q psy1463 419 ------------------------------------------------PENS---------MLYDEQISTNYHKERIATI 441 (947)
Q Consensus 419 ------------------------------------------------~E~~---------lL~~~~~s~~~~~~~i~~v 441 (947)
||+. ++.++...+..++..+..+
T Consensus 220 ~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~v 299 (875)
T PRK14015 220 VEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESV 299 (875)
T ss_pred EeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHH
Confidence 4443 2223332333455668899
Q ss_pred HHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhhccc-cc-hhhHHHHHHHHHHHhhhcccCCCCeeeccCCch
Q psy1463 442 VAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHT-WK-IKDIFVVDELQNVFFLDALKSSHPVHVEVSHPD 519 (947)
Q Consensus 442 iaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~~-~~-~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~ 519 (947)
||||+|||||||+|||+||+++|||||||+|++..+.....+. +. +.+.... ...++..|+...++|+.. .+..
T Consensus 300 IaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l--~~~~~~~D~~~~a~pi~p--~~~~ 375 (875)
T PRK14015 300 IAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVL--RAAQFAEDAGPMAHPVRP--DSYI 375 (875)
T ss_pred HHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhhcccccccccCCCCCC--cchh
Confidence 9999999999999999999999999999999998877665431 11 1111111 112344566666677653 2345
Q ss_pred hhhhhccccccchHHHHHHHHHhhhCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhccccccCcchhhHHhhhHHHHH
Q psy1463 520 EITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599 (947)
Q Consensus 520 ~i~~~F~~i~Y~KGa~vL~ML~~~lGee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 599 (947)
++...|+.++|.||+++||||+..||++.|+++|+.|+++|++++++++|||++++++
T Consensus 376 ~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~a---------------------- 433 (875)
T PRK14015 376 EINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDA---------------------- 433 (875)
T ss_pred hHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------------------
Confidence 6778899999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCChhhHHHHHHHhhcccccccCCCCCchhhhhccccccCCCcEEEEEEeCC--Cc--eEEEEEe
Q psy1463 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYD--AG--SAVVKQV 664 (947)
Q Consensus 600 ~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~dl~~~~~~W~~q~G~Pvv~v~~~~~--~~--~i~i~Q~ 664 (947)
+|.|+.+|+ +|++|+|+|+++|+++++ ++ +++++|.
T Consensus 434 ----------------------------sg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~ 473 (875)
T PRK14015 434 ----------------------------SGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQS 473 (875)
T ss_pred ----------------------------hCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEe
Confidence 788999986 899999999999999874 22 3677775
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=7.2e-51 Score=467.11 Aligned_cols=289 Identities=45% Similarity=0.790 Sum_probs=251.0
Q ss_pred CCCCCceeeEEEEEEEeeccCCCeEEEEEEEEEEEEecCCCEEEEEcCCcEEEEEEeeeccccccCcCCCCCceeeeeeE
Q psy1463 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRSANWESDEGTSLTIGQV 312 (947)
Q Consensus 233 rLP~~v~P~hY~L~L~~d~~~~~~~f~G~v~I~~~~~~~t~~I~Lha~~L~I~~v~i~~~~~~~~~~~~~~g~~i~~~~~ 312 (947)
|||+++.|.||+|+|++++ +. .+|+|+|+|+++++++++.|+||+.++.|.++.+.... .........+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~-~~-~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~---------~~~~~~~~~~ 69 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDF-EK-RTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGND---------SSSEYKSSPF 69 (390)
T ss_dssp S--TTEEEEEEEEEEEEET-TT-TEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEE---------CSCTECCEEE
T ss_pred CCCCCeEEEEEEEEEEEeC-CC-CEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCcc---------ccccccccce
Confidence 8999999999999999999 77 79999999999999999999999999999999985431 1111111226
Q ss_pred EecCCCcEEEEEecCcccCCCCeEEEEEEEEEEecCCcCccccccccc--ccceeEEEEeeccccCcCCcCccCCCCCCc
Q psy1463 313 RNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRSSYEV--NNTKRWIMASQFQATDARRAFPCFDEPSLK 390 (947)
Q Consensus 313 ~~~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g~i~~~~~G~y~s~y~~--~g~~~~~~~Tq~ep~~AR~~FPCfDeP~~K 390 (947)
.++.+++.|+|.+++ ++.+|+.|+|+|.|+|.++++..|+|++.|.+ ++...++++|||||.+||+||||||+|++|
T Consensus 70 ~~~~~~~~l~I~l~~-~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~k 148 (390)
T PF01433_consen 70 EYDDENEKLTITLPK-PLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFK 148 (390)
T ss_dssp EEECCBTEEEEEEEE-ECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSE
T ss_pred eeccccceeehhhhh-hcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCcc
Confidence 677888899999999 99999999999999999998899999998874 777889999999999999999999999999
Q ss_pred ceEEEEEEecCceeEEecCCcccCCC--CC--------------------------------------------------
Q psy1463 391 AKFAISIGRLPNMTAISNMPLKDGNQ--SD-------------------------------------------------- 418 (947)
Q Consensus 391 AtF~itIt~P~~~~alSN~~~~~~~~--~g-------------------------------------------------- 418 (947)
|+|+++|++|++++|+|||++.+... +|
T Consensus 149 a~f~~~i~~p~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 228 (390)
T PF01433_consen 149 ATFDLTITHPKDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQ 228 (390)
T ss_dssp EEEEEEEEEETTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHH
T ss_pred ceEEEeeeccccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHH
Confidence 99999999999999999999877665 33
Q ss_pred -----------------------------------------------CcccccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy1463 419 -----------------------------------------------PENSMLYDEQISTNYHKERIATIVAHELAHQWF 451 (947)
Q Consensus 419 -----------------------------------------------~E~~lL~~~~~s~~~~~~~i~~viaHElAHQWF 451 (947)
++..++++++.++...+..+..+||||+|||||
T Consensus 229 ~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWf 308 (390)
T PF01433_consen 229 FALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWF 308 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTB
T ss_pred HHHHhhHHHHHHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHh
Confidence 333455666656666778889999999999999
Q ss_pred cCccccccCCchhHhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhhhcccCCCCeeeccCCchhhhhhccccccc
Q psy1463 452 GNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYS 531 (947)
Q Consensus 452 GnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~~i~~~F~~i~Y~ 531 (947)
||+||++||+|+||+||||+|++++++++.+|++.+.+.+..+.++.++..|.....+|+...+.++.++...|+.++|.
T Consensus 309 Gn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~ 388 (390)
T PF01433_consen 309 GNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYN 388 (390)
T ss_dssp TTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHH
T ss_pred ccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccC
Confidence 99999999999999999999999999999999999888999999999999999999999998888999999999999999
Q ss_pred hH
Q psy1463 532 KG 533 (947)
Q Consensus 532 KG 533 (947)
||
T Consensus 389 KG 390 (390)
T PF01433_consen 389 KG 390 (390)
T ss_dssp HH
T ss_pred CC
Confidence 98
No 8
>KOG1047|consensus
Probab=100.00 E-value=4.4e-40 Score=367.34 Aligned_cols=326 Identities=24% Similarity=0.292 Sum_probs=248.3
Q ss_pred CCCceeeEEEEEEEeeccCCCeEEEEEEEEEEEEecCCCEEEEEcCCcEEEEEEeeeccccccCcCCCCCceeeeee-EE
Q psy1463 235 PTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRSANWESDEGTSLTIGQ-VR 313 (947)
Q Consensus 235 P~~v~P~hY~L~L~~d~~~~~~~f~G~v~I~~~~~~~t~~I~Lha~~L~I~~v~i~~~~~~~~~~~~~~g~~i~~~~-~~ 313 (947)
+..+.-.|+.|++.+|+ +. ..++|+|.+++++..+...|+|+..+|.|.+|++... +....+.. ..
T Consensus 13 ~~~~~~~H~~l~~~vdF-~~-~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~-----------~~~~~i~~~~~ 79 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDF-EK-RGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGE-----------EPPFRIGFRQP 79 (613)
T ss_pred hhhhhhheeeeeEEEec-cc-ceecceEEEEEEeccCCceeEeeecceeeEEeeccCC-----------CCCCccCcccC
Confidence 45566799999999999 87 8999999999998877777999999999999998432 22222222 12
Q ss_pred ecCCCcEEEEEecCcccCCCCeEEEEEEEEEEecCCcCcccccccc-cccceeEEEEeeccccCcCCcCccCCCCCCcce
Q psy1463 314 NDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRSSYE-VNNTKRWIMASQFQATDARRAFPCFDEPSLKAK 392 (947)
Q Consensus 314 ~~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g~i~~~~~G~y~s~y~-~~g~~~~~~~Tq~ep~~AR~~FPCfDeP~~KAt 392 (947)
.....+.+++..+. .+.|++.+|.|.|+... +..|+-.-.-. ..|+.++++.||||...||.+|||+|.|+.|.|
T Consensus 80 ~~g~~~~~~l~~~~--~~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~t 155 (613)
T KOG1047|consen 80 FLGSGQKLVLPAPS--SKAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKST 155 (613)
T ss_pred CCCCceEEEecccc--ccccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeE
Confidence 22334456677665 56888899999999643 34555432222 367778999999999999999999999999999
Q ss_pred EEEEEEecCceeEEecCCcccCCC--CC----------------------------------------------------
Q psy1463 393 FAISIGRLPNMTAISNMPLKDGNQ--SD---------------------------------------------------- 418 (947)
Q Consensus 393 F~itIt~P~~~~alSN~~~~~~~~--~g---------------------------------------------------- 418 (947)
|++.|.+|.+++++++.....+.. +|
T Consensus 156 y~a~v~vp~~l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eIgpRs~VwaEp~~~~a~~~ef~~~ 235 (613)
T KOG1047|consen 156 YTAEVEVPMGLTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESREIGPRSRVWAEPCLLDACQEEFAGE 235 (613)
T ss_pred EEEEEEcCCcceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccccCCccceecchhhhHHHHHHHHhh
Confidence 999999999999998876543332 22
Q ss_pred ---------------------------------CcccccccCCCCcchhhHHHHHHHHHHHHHHhhcCccccccCCchhH
Q psy1463 419 ---------------------------------PENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWL 465 (947)
Q Consensus 419 ---------------------------------~E~~lL~~~~~s~~~~~~~i~~viaHElAHQWFGnlVT~~~W~d~WL 465 (947)
||++.+.--..+..........+|||||||.||||+||+..|+++||
T Consensus 236 ~e~~L~~Ae~l~GpY~WgryDllvlPpSFP~gGMENPcltF~TpTllaGDrsl~~vIaHEIAHSWtGNlVTN~sWehfWL 315 (613)
T KOG1047|consen 236 TEDFLKAAEKLFGPYVWGRYDLLVLPPSFPFGGMENPCLTFVTPTLLAGDRSLVDVIAHEIAHSWTGNLVTNASWEHFWL 315 (613)
T ss_pred hHHHHHHHHHHcCCcccccceEEEecCCCCcccccCcceeeecchhhcCCcchhhHHHHHhhhhhcccccccCccchhhh
Confidence 77765543333456667777899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccch--hhHHHHHHHHHHHhhhcccCCCCeeec---cCCchhhhhhccccccchHHHHHHHH
Q psy1463 466 NEGFASYIEYFGVDSVEHTWKI--KDIFVVDELQNVFFLDALKSSHPVHVE---VSHPDEITEIFDKISYSKGSSLLRMA 540 (947)
Q Consensus 466 nEGfAtY~~~~~~~~~~~~~~~--~~~f~~~~~~~al~~D~~~~~~pi~~~---v~~~~~i~~~F~~i~Y~KGa~vL~ML 540 (947)
||||++|+|..+...++|+... ........++. ..|.....++...- ... -+.+..|..+.|.||..+|+.|
T Consensus 316 NEGfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~--~~d~~g~~~~~tkLv~kl~~-~dPDdafs~VpYeKG~~ll~~L 392 (613)
T KOG1047|consen 316 NEGFTVYLERRIVGRLYGEAYRQFEALIGWRELRP--SMDLFGETSEFTKLVVKLEN-VDPDDAFSQVPYEKGFALLFYL 392 (613)
T ss_pred cccchhhhhhhhhhhhcchhHHHHHHhcChhhhhh--HHHhcCCCcccchhhhhccC-CChHHhhhcCchhhhhHHHHHH
Confidence 9999999999999999885321 11111222222 22444445554432 222 2233679999999999999999
Q ss_pred HhhhC-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhccc
Q psy1463 541 EHFLT-TEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHE 580 (947)
Q Consensus 541 ~~~lG-ee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~~~~~~ 580 (947)
++.+| ++.|..+||.|+++|+|+++.++||.+.|-+.+|+
T Consensus 393 e~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe 433 (613)
T KOG1047|consen 393 EQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPE 433 (613)
T ss_pred HHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcc
Confidence 99999 67899999999999999999999999999998444
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.91 E-value=1.2e-24 Score=243.54 Aligned_cols=186 Identities=33% Similarity=0.625 Sum_probs=154.2
Q ss_pred eeeEEEEcCHHHHHHHHHHHccCCCCCCCChhcHHHHHHHHHHHHHcCCccHHHHHHHHhhc-ccCCchhHHHHHHHHHH
Q psy1463 665 RGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYL-QYETELVPWRSAMQALG 743 (947)
Q Consensus 665 ~GyYRV~Yd~~~w~~i~~~L~~~~~~~~i~~~~Ra~LidD~~~la~~g~l~~~~~l~ll~yL-~~E~~~~~w~~~~~~l~ 743 (947)
.|||||+||+++|..|+++|. .++ |++.+|++||+|+|+++++|+++++.+|+++.|+ ++|++|.||..++..|.
T Consensus 9 ~GyyRV~Yd~~~~~~l~~~L~--~~~--l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~ 84 (324)
T PF11838_consen 9 TGYYRVNYDEENWDALIKQLQ--SNH--LSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLS 84 (324)
T ss_dssp SSSSEEEECTTHHHHHHHHHH--HHG--S-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHh--cCC--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 799999999999999999998 444 9999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhhh-cchhh-hHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHhhhhhhccC--C
Q psy1463 744 YIEGQLY-RRAYF-DKYKKYLLHIIRPMYESIGFDGSPKDDQMTVYKRVDVLNRACILGLKDCVQKALSKYQNWISN--P 819 (947)
Q Consensus 744 ~l~~~l~-~~~~~-~~fk~y~~~Ll~~~y~klgw~~~~~~s~~~~~lR~~il~~AC~~g~~~Ci~~A~~~F~~~l~~--P 819 (947)
.+.+++. ..+.. ..|+.|+.+++.++++++||+...++++....+|..|+.+|| |+++|+++|+++|++|+.+ +
T Consensus 85 ~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~ 162 (324)
T PF11838_consen 85 SLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDS 162 (324)
T ss_dssp HHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcc
Confidence 9997877 33444 459999999999999999999877799999999999999999 9999999999999999964 2
Q ss_pred ---cc------------ccccCcceEEEeeccchH-------HHHHHHHhcccccceee
Q psy1463 820 ---SK------------IERTGPYVWDHFQETVFM-------STYLVAMAVTDFSHRVH 856 (947)
Q Consensus 820 ---d~------------i~~g~~~~w~~~~~t~~~-------styL~AL~~s~~~~~~~ 856 (947)
.+ ++.|+...|+.+++.+.. ..+|.||+|++++.+..
T Consensus 163 ~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 163 PESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred cccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHH
Confidence 11 667777789999888765 68999999999886643
No 10
>KOG1932|consensus
Probab=99.88 E-value=2.9e-21 Score=230.44 Aligned_cols=312 Identities=20% Similarity=0.247 Sum_probs=209.1
Q ss_pred eeEEEEEEE-eeccCCCeEEEEEEEEEEEE-ecCCCEEEEEcCCcEEEEEEeeeccccccCc--------CCCCCcee--
Q psy1463 240 PLAYKIKIL-PFLIENNFTFLGEVWIHVEV-SQTTNNITLHMNDLTILERSIKQVDNRSANW--------ESDEGTSL-- 307 (947)
Q Consensus 240 P~hY~L~L~-~d~~~~~~~f~G~v~I~~~~-~~~t~~I~Lha~~L~I~~v~i~~~~~~~~~~--------~~~~g~~i-- 307 (947)
-.|..+.|. +|+ .+ .++.|.++|++.. ..+...|+||++++.|.+|.|......+.+. +...+..+
T Consensus 27 ~~hQkv~l~~Idf-~~-rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~ 104 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDF-SK-RSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDP 104 (1180)
T ss_pred ceEEEEEeecccc-ee-eEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhh
Confidence 589999999 999 88 8999999999998 4567999999999999999985431000000 00011000
Q ss_pred -------eeeeEEecCCCcEEEEEecCcc----cCCCCeEEEEEEEEEEecCCcCc--ccccccccccceeEEEEeeccc
Q psy1463 308 -------TIGQVRNDTINQFMVFELEDEQ----FWATKRYVLYIKYVGKLNDQMRG--LYRSSYEVNNTKRWIMASQFQA 374 (947)
Q Consensus 308 -------~~~~~~~~~~~~~L~I~L~~~~----L~~G~~y~L~I~y~g~i~~~~~G--~y~s~y~~~g~~~~~~~Tq~ep 374 (947)
...-...+.+++.|.|.+++ + +..+...+|+|+|+. .++..| |++..|........++++..+-
T Consensus 105 ~s~~~~~~~~y~~l~~~~g~L~I~ipk-~~~~~~ee~~~lr~~I~~s~--~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~ 181 (1180)
T KOG1932|consen 105 ASQSHFLAVQYEDLDEDNGELLIKIPK-ESKKVGEELKALRLRIDFSV--REPKDGIKFVRPNYIVSPRDKHVFTNNTQI 181 (1180)
T ss_pred hhhhhhHHHhhhccccCCCeEEEEcCc-hhhhhhhhccceEEEEEEEc--cCCCCCeEEeccCcccCcccCceEeecCcc
Confidence 01111234456889999998 5 334556788899984 444455 4554442223233344444444
Q ss_pred -cCcCCcCccCCCCCCcceEEEEEEecCceeEEecCCcccCCC-CC----------------------------------
Q psy1463 375 -TDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQ-SD---------------------------------- 418 (947)
Q Consensus 375 -~~AR~~FPCfDeP~~KAtF~itIt~P~~~~alSN~~~~~~~~-~g---------------------------------- 418 (947)
.+||.||||.|.+..+++|++.+++|..++++|+|.+.+... .+
T Consensus 182 ~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~ 261 (1180)
T KOG1932|consen 182 SSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSM 261 (1180)
T ss_pred ccccceEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCCCcc
Confidence 569999999999999999999999999999999998765543 21
Q ss_pred --------------------------------------------------------------CcccccccCCCCcchhhH
Q psy1463 419 --------------------------------------------------------------PENSMLYDEQISTNYHKE 436 (947)
Q Consensus 419 --------------------------------------------------------------~E~~lL~~~~~s~~~~~~ 436 (947)
..+.+||+.. .+.+..
T Consensus 262 ~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~lLy~~~--iIDq~~ 339 (1180)
T KOG1932|consen 262 IDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTSLLYSKN--IIDQTF 339 (1180)
T ss_pred CcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeeccccchHh--hhhHHH
Confidence 1112333322 233444
Q ss_pred HHHHHHHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhhhccc----CCCCee
Q psy1463 437 RIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFLDALK----SSHPVH 512 (947)
Q Consensus 437 ~i~~viaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~----~~~pi~ 512 (947)
.....+|-.||.||||..+|+..|+|.||-+|+|.|+..++++++.|...+ ...+...+..+..+|-.. .+.|+.
T Consensus 340 ~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEy-ry~lKk~~d~V~~~d~~~g~i~l~~Pi~ 418 (1180)
T KOG1932|consen 340 LTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEY-RYQLKKALDAVVDYDVQKGAIYLTRPIS 418 (1180)
T ss_pred HHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHhhhccCceeeccCCC
Confidence 556789999999999999999999999999999999999999999997554 222344445555555421 111332
Q ss_pred eccC--------------CchhhhhhccccccchHHHHHHHHHhhhCHHHHHHHHHHHHHh
Q psy1463 513 VEVS--------------HPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKK 559 (947)
Q Consensus 513 ~~v~--------------~~~~i~~~F~~i~Y~KGa~vL~ML~~~lGee~F~~~Lr~Yl~~ 559 (947)
.... ...-.+..|....-.|+..+.+|+++.+|.+-|.+..+..+..
T Consensus 419 ~s~k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~ 479 (1180)
T KOG1932|consen 419 PSMKFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLEL 479 (1180)
T ss_pred cchhhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2111 0011112222222458889999999999999988888776654
No 11
>KOG1046|consensus
Probab=99.76 E-value=2.7e-19 Score=223.13 Aligned_cols=105 Identities=43% Similarity=0.730 Sum_probs=98.7
Q ss_pred ceEEEeeccchHHHHHHHHhcccccceeeccCCCCceeEecchhhhhhhcccccchhHHHHHHHHHhCCCCCCCCcCEEE
Q psy1463 828 YVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIA 907 (947)
Q Consensus 828 ~~w~~~~~t~~~styL~AL~~s~~~~~~~~~~~~~~iri~~r~~~~~~~~yal~i~~~il~~~e~~f~~~ypl~KlD~va 907 (947)
..|+.|.++++||+||+||+++++.........++++|+|++|+.++++.||++++.++|++|++||+++||+||+|+||
T Consensus 208 ~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~ia 287 (882)
T KOG1046|consen 208 WKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVA 287 (882)
T ss_pred eeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEe
Confidence 78899999999999999999999999887777778999999999999999999999999999999999999999999999
Q ss_pred eCCCCCccccchhhhhhhhhH-HHHh
Q psy1463 908 LPDFGAGAMENFGLITFRTAI-LKEI 932 (947)
Q Consensus 908 vPdf~~gaMENwGlity~e~~-l~~~ 932 (947)
||||.+|||||||||||||.. |.+.
T Consensus 288 vPdf~~GAMENwGLvtyre~~lL~~~ 313 (882)
T KOG1046|consen 288 VPDFSAGAMENWGLVTYRETALLYDP 313 (882)
T ss_pred cCCccccchhcCcceeeeehhhccCC
Confidence 999999999999999999964 4443
No 12
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.54 E-value=1.7e-15 Score=187.44 Aligned_cols=108 Identities=22% Similarity=0.359 Sum_probs=94.5
Q ss_pred CcceEEEeeccchHHHHHHHHhcccccceeec----cCCCCceeEecchhhhhhhcccccchhHHHHHHHHHhCCCCCCC
Q psy1463 826 GPYVWDHFQETVFMSTYLVAMAVTDFSHRVHN----DDHSGSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLE 901 (947)
Q Consensus 826 ~~~~w~~~~~t~~~styL~AL~~s~~~~~~~~----~~~~~~iri~~r~~~~~~~~yal~i~~~il~~~e~~f~~~ypl~ 901 (947)
++..|..+..+++|++||+||+++++..+... ...++++++|++++..+++.++++.+++++++||++||+|||++
T Consensus 161 ~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~ 240 (863)
T TIGR02414 161 DGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLD 240 (863)
T ss_pred CCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChh
Confidence 44567788888999999999999999876542 22346789999999888999999999999999999999999999
Q ss_pred CcCEEEeCCCCCccccchhhhhhhhhHHHHhh
Q psy1463 902 KTDMIALPDFGAGAMENFGLITFRTAILKEIL 933 (947)
Q Consensus 902 KlD~vavPdf~~gaMENwGlity~e~~l~~~~ 933 (947)
|+|+|++|+|..|||||||||+|+|.+++...
T Consensus 241 k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~ 272 (863)
T TIGR02414 241 IFMIVAVDDFNMGAMENKGLNIFNSKYVLADP 272 (863)
T ss_pred hccEEecCCCCCccccccceeccccceEEeCC
Confidence 99999999999999999999999998775443
No 13
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.52 E-value=2.4e-15 Score=187.90 Aligned_cols=102 Identities=33% Similarity=0.569 Sum_probs=89.5
Q ss_pred ceEEEeeccchHHHHHHHHhcccccceeeccCCCCceeEecchhhhhh--hcccccchhHHHHHHHHHhCCCCCCCCcCE
Q psy1463 828 YVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQ--TAYSLDIGPRLLKYFEKYFDYHYPLEKTDM 905 (947)
Q Consensus 828 ~~w~~~~~t~~~styL~AL~~s~~~~~~~~~~~~~~iri~~r~~~~~~--~~yal~i~~~il~~~e~~f~~~ypl~KlD~ 905 (947)
..| .|..+++|++||+||+++++...... ..++++++|++++..++ ..++++.+++++++|+++||+|||++|+|+
T Consensus 173 ~~~-~F~~t~pmstYL~a~~vG~f~~~~~~-~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~ 250 (831)
T TIGR02412 173 RRW-EFPETPKLSTYLTAVAAGPYHSVQDE-SRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQ 250 (831)
T ss_pred eEE-EecCCCCcccceEEEEEeceEEEeec-CCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCE
Confidence 344 57788999999999999998876533 45688999999987654 568999999999999999999999999999
Q ss_pred EEeCCCCCccccchhhhhhhhhHHHH
Q psy1463 906 IALPDFGAGAMENFGLITFRTAILKE 931 (947)
Q Consensus 906 vavPdf~~gaMENwGlity~e~~l~~ 931 (947)
|++|+|..|||||||+|+|+|.+|+.
T Consensus 251 V~vP~f~~GaMEn~Glit~~e~~l~~ 276 (831)
T TIGR02412 251 IFVPEFNAGAMENAGCVTFAENFLHR 276 (831)
T ss_pred EEcCCCCCCcccccceeeechhhccC
Confidence 99999999999999999999997754
No 14
>PRK14015 pepN aminopeptidase N; Provisional
Probab=99.44 E-value=2.1e-14 Score=178.47 Aligned_cols=106 Identities=21% Similarity=0.360 Sum_probs=91.4
Q ss_pred cceEEEeeccchHHHHHHHHhcccccceeec----cCCCCceeEecchhhhhhhcccccchhHHHHHHHHHhCCCCCCCC
Q psy1463 827 PYVWDHFQETVFMSTYLVAMAVTDFSHRVHN----DDHSGSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEK 902 (947)
Q Consensus 827 ~~~w~~~~~t~~~styL~AL~~s~~~~~~~~----~~~~~~iri~~r~~~~~~~~yal~i~~~il~~~e~~f~~~ypl~K 902 (947)
+..+..+..+++|++||+||+++++..+... ...++++++|++++..+++.++++.++++++++|++||.|||++|
T Consensus 175 g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k 254 (875)
T PRK14015 175 GRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDI 254 (875)
T ss_pred CeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhh
Confidence 3444456677889999999999999876542 223468999999998888999999999999999999999999999
Q ss_pred cCEEEeCCCCCccccchhhhhhhhhHHHHh
Q psy1463 903 TDMIALPDFGAGAMENFGLITFRTAILKEI 932 (947)
Q Consensus 903 lD~vavPdf~~gaMENwGlity~e~~l~~~ 932 (947)
+|+|++|+|..||||||||++|+|.+++..
T Consensus 255 ~diVavp~f~~GaMEN~Gl~~f~~~~lL~~ 284 (875)
T PRK14015 255 FMIVAVDDFNMGAMENKGLNIFNSKYVLAD 284 (875)
T ss_pred hCEEeCCCCCCcccccccccccccceEecC
Confidence 999999999999999999999999876543
No 15
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=99.44 E-value=3.2e-14 Score=163.69 Aligned_cols=105 Identities=40% Similarity=0.681 Sum_probs=88.5
Q ss_pred CcceEEEeeccchHHHHHHHHhcccccceeeccCCCCceeEecchhhhhhhcccccchhHHHHHHHHHhCCCCCCCCcCE
Q psy1463 826 GPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDM 905 (947)
Q Consensus 826 ~~~~w~~~~~t~~~styL~AL~~s~~~~~~~~~~~~~~iri~~r~~~~~~~~yal~i~~~il~~~e~~f~~~ypl~KlD~ 905 (947)
++..+..|..+++|++|++||+++++..+......+.++++|++++...+..++++.+.+++++|+++||++||++|+|+
T Consensus 177 ~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~ 256 (390)
T PF01433_consen 177 DGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDI 256 (390)
T ss_dssp TTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEE
T ss_pred ccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeE
Confidence 45778889999999999999999999887554444478999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCccccchhhhhhhhhHHH
Q psy1463 906 IALPDFGAGAMENFGLITFRTAILK 930 (947)
Q Consensus 906 vavPdf~~gaMENwGlity~e~~l~ 930 (947)
|++|+|..|||||||+|+|+|..|+
T Consensus 257 v~~p~~~~~~me~~g~i~~~~~~l~ 281 (390)
T PF01433_consen 257 VAVPDFPFGGMENWGLITYRESYLL 281 (390)
T ss_dssp EEEST-SSSEE--TTEEEEEGGGTS
T ss_pred EEEeccccccccccccccccccccc
Confidence 9999999999999999999998764
No 16
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.37 E-value=1.5e-13 Score=172.02 Aligned_cols=111 Identities=32% Similarity=0.528 Sum_probs=96.5
Q ss_pred cceEEEeeccchHHHHHHHHhcccccceeeccC---CCCceeEecchhhhhhhcccccchhHHHHHHHHHhCCCCCCCCc
Q psy1463 827 PYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDD---HSGSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKT 903 (947)
Q Consensus 827 ~~~w~~~~~t~~~styL~AL~~s~~~~~~~~~~---~~~~iri~~r~~~~~~~~yal~i~~~il~~~e~~f~~~ypl~Kl 903 (947)
+..+..|..+++|++||+||+++++........ .+.++++|+.+.....+.|+++.+.+.++++|++||.|||++|
T Consensus 188 g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~- 266 (859)
T COG0308 188 GRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI- 266 (859)
T ss_pred CcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-
Confidence 357888999999999999999999976654432 3678999999988888999999999999999999999999999
Q ss_pred CEEEeCCCCCccccchhhhhhhhhHHHHhhhcCcc
Q psy1463 904 DMIALPDFGAGAMENFGLITFRTAILKEILRGCEK 938 (947)
Q Consensus 904 D~vavPdf~~gaMENwGlity~e~~l~~~~~~~~~ 938 (947)
|+|+||+|..|||||||+|||++.+++...++..+
T Consensus 267 ~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~ 301 (859)
T COG0308 267 DIVAVPDFSAGAMENWGLVTFREKYLLADPETATD 301 (859)
T ss_pred cEEeccCCCCccccccceeEEeeeEEeeCcccchh
Confidence 99999999999999999999999876655444443
No 17
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.12 E-value=4e-11 Score=144.85 Aligned_cols=95 Identities=27% Similarity=0.420 Sum_probs=81.1
Q ss_pred EEEeeccchHHHHHHHHhcccccceeeccCCCCceeEecchhhhhhhccccc-chhHHHHHHHHHhCCCCCCCCcCEEEe
Q psy1463 830 WDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLD-IGPRLLKYFEKYFDYHYPLEKTDMIAL 908 (947)
Q Consensus 830 w~~~~~t~~~styL~AL~~s~~~~~~~~~~~~~~iri~~r~~~~~~~~yal~-i~~~il~~~e~~f~~~ypl~KlD~vav 908 (947)
...|..+++|++||+||+++++... ..+..+++|++|+.+.++.+++. .++++++++|++ +.|||++|+|+|++
T Consensus 177 ~~~F~~t~pmptYLia~avG~~~~~----~~g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~-~~pYp~~k~d~vvl 251 (601)
T TIGR02411 177 KYLFKQKVPIPAYLIALASGDLASA----PIGPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDL-IFPYEWGQYDLLVL 251 (601)
T ss_pred eEEEEeCCCcchhhheeeeccceec----ccCCceEEEccchhHHHHHHHHHHhHHHHHHHHHHh-CCCCcCccceEEEe
Confidence 4467788899999999999998653 23556899999998888888888 999999999986 67999999999987
Q ss_pred -CCCCCccccchhhhhhhhhHHH
Q psy1463 909 -PDFGAGAMENFGLITFRTAILK 930 (947)
Q Consensus 909 -Pdf~~gaMENwGlity~e~~l~ 930 (947)
|+|.+||||||| ++|.+..++
T Consensus 252 pp~f~~GgMEN~~-ltf~~~~ll 273 (601)
T TIGR02411 252 PPSFPYGGMENPN-LTFATPTLI 273 (601)
T ss_pred cCccccccccccc-ceeeccccc
Confidence 799999999999 578876554
No 18
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.10 E-value=1.2e-10 Score=111.54 Aligned_cols=108 Identities=28% Similarity=0.421 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhhhcccCCCCeee
Q psy1463 434 HKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHV 513 (947)
Q Consensus 434 ~~~~i~~viaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi~~ 513 (947)
.......+++||++|+|+++.++.......|++||+|+|++.. . +.........++..+...+..++..
T Consensus 21 ~~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (128)
T PF13485_consen 21 DEDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR--------I---EDEFDEDLKQAIESGSLPPLEPLNS 89 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC--------c---cchhHHHHHHHHHcCCCCChHHHhc
Confidence 3445568999999999999999877888999999999999932 1 1111222223333333222222221
Q ss_pred ccCCchhhhhhccccccchHHHHHHHHHhhhCHHHHHHHHHHH
Q psy1463 514 EVSHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKY 556 (947)
Q Consensus 514 ~v~~~~~i~~~F~~i~Y~KGa~vL~ML~~~lGee~F~~~Lr~Y 556 (947)
.... ...+....|.+|.+++++|+...|++.|++.|+.|
T Consensus 90 ~~~~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 90 SFDF----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred cccc----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1111 24456679999999999999999999999999875
No 19
>KOG1047|consensus
Probab=97.93 E-value=9.7e-06 Score=93.17 Aligned_cols=88 Identities=31% Similarity=0.488 Sum_probs=73.7
Q ss_pred EeeccchHHHHHHHHhcccccceeeccCCCCceeEecchhhhhhhccccc-chhHHHHHHHHHhCCCCCCCCcCEEEe-C
Q psy1463 832 HFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLD-IGPRLLKYFEKYFDYHYPLEKTDMIAL-P 909 (947)
Q Consensus 832 ~~~~t~~~styL~AL~~s~~~~~~~~~~~~~~iri~~r~~~~~~~~yal~-i~~~il~~~e~~f~~~ypl~KlD~vav-P 909 (947)
+|....+.+.||.|+++++.... ..+...+||+.+...+.+.+-+. .++++|+.-|+.+| ||++..||++++ |
T Consensus 188 ~f~q~~pIP~YLiai~~G~L~s~----eIgpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDllvlPp 262 (613)
T KOG1047|consen 188 RFKQEVPIPSYLIAIAVGDLESR----EIGPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDLLVLPP 262 (613)
T ss_pred EEEeccCchhhhHHHhhcccccc----ccCCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceEEEecC
Confidence 45555677999999999876443 23445899999999988888887 89999999999998 999999999988 6
Q ss_pred CCCCccccchhhhhh
Q psy1463 910 DFGAGAMENFGLITF 924 (947)
Q Consensus 910 df~~gaMENwGlity 924 (947)
.|++|||||.=|+..
T Consensus 263 SFP~gGMENPcltF~ 277 (613)
T KOG1047|consen 263 SFPFGGMENPCLTFV 277 (613)
T ss_pred CCCcccccCcceeee
Confidence 899999999976544
No 20
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.38 E-value=0.0013 Score=76.08 Aligned_cols=153 Identities=18% Similarity=0.276 Sum_probs=91.0
Q ss_pred cccccccCCCCcchh-hHHHHHHHHHHHHHHhhcCcccccc-C----------CchhHhHHHHHHHHHHHHHhhccccch
Q psy1463 420 ENSMLYDEQISTNYH-KERIATIVAHELAHQWFGNLVTLAW-W----------NDLWLNEGFASYIEYFGVDSVEHTWKI 487 (947)
Q Consensus 420 E~~lL~~~~~s~~~~-~~~i~~viaHElAHQWFGnlVT~~~-W----------~d~WLnEGfAtY~~~~~~~~~~~~~~~ 487 (947)
.+.+.++.-..+..+ .+....+++||..|-|-+--+-++. | .-+|+.|||++|+..+..-... -..+
T Consensus 228 St~l~~~r~~~~~~~ky~~~l~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsg-l~~~ 306 (558)
T COG3975 228 STALIYDRFGFTDQDKYQDLLGLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSG-LISL 306 (558)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhc-cCcH
Confidence 344555442222233 3566789999999999887777654 3 3599999999999987665432 1111
Q ss_pred hhHHH---HHHHHHHHhhhcccCCCCeee-------ccCCchhhhhhccccc--cchHHHHHHHHHhhh-----CHHHHH
Q psy1463 488 KDIFV---VDELQNVFFLDALKSSHPVHV-------EVSHPDEITEIFDKIS--YSKGSSLLRMAEHFL-----TTEVLK 550 (947)
Q Consensus 488 ~~~f~---~~~~~~al~~D~~~~~~pi~~-------~v~~~~~i~~~F~~i~--Y~KGa~vL~ML~~~l-----Gee~F~ 550 (947)
++|+ ...+.....- ...-..|+.- ....++. ..-+.+. |.||++|--+|.-.| |+..+.
T Consensus 307 -~~~l~~la~tl~~~~~~-~gRl~~~laEsS~~awik~yr~d~--ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLD 382 (558)
T COG3975 307 -ETYLNYLAKTLARYLNT-PGRLRQSLAESSFDAWIKYYRPDE--NSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLD 382 (558)
T ss_pred -HHHHHHHHHHHHHHhcC-CceecccccccccchhHHhhcccc--cccccchhhhhchhHHHHHHHHHHHhcCCCcccHH
Confidence 2332 2222111110 0000011111 0111111 1112233 999999998888777 466688
Q ss_pred HHHHHHHHhhcC--CCCCHHHHHHHHHHh
Q psy1463 551 LGLQKYIKKKAM--GSSTQAELWAFLTNA 577 (947)
Q Consensus 551 ~~Lr~Yl~~~~~--~na~~~Df~~~l~~~ 577 (947)
..|+...+.+.. +..+++|+...++..
T Consensus 383 dvmram~~~~~~~~~~~t~e~v~av~~~~ 411 (558)
T COG3975 383 DVMRALWKEFGRAERGYTPEDVQAVLENV 411 (558)
T ss_pred HHHHHHHHHhCcCccCCCHHHHHHHHHhh
Confidence 888888887766 678999999999987
No 21
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=96.47 E-value=0.015 Score=65.77 Aligned_cols=124 Identities=18% Similarity=0.093 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHh-hc-Ccccccc--CCchhHhHHHHHHHHHHHHHhhccccc-hhhHHHHHHHHHHHhhh-cccCC
Q psy1463 435 KERIATIVAHELAHQW-FG-NLVTLAW--WNDLWLNEGFASYIEYFGVDSVEHTWK-IKDIFVVDELQNVFFLD-ALKSS 508 (947)
Q Consensus 435 ~~~i~~viaHElAHQW-FG-nlVT~~~--W~d~WLnEGfAtY~~~~~~~~~~~~~~-~~~~f~~~~~~~al~~D-~~~~~ 508 (947)
...+..+||||+-|+- |. +.|.... -.|+|||||+|.-+|.++.....+... ..+. ....+..+ .....
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~-----R~~~y~~~~~~~~~ 210 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDS-----RIPYYNNYTSGNYN 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccc-----cHHHHhhccccCCC
Confidence 4556789999999995 22 3444432 369999999999999998877753221 1010 00011111 11111
Q ss_pred CCeeeccCCchhhhhhccccccchHHHHHHHHHhhhCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy1463 509 HPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLT 575 (947)
Q Consensus 509 ~pi~~~v~~~~~i~~~F~~i~Y~KGa~vL~ML~~~lGee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~ 575 (947)
..+..- .... -....|....++...|.+..|.+.+++.|.. ....+..+..+++.
T Consensus 211 ~~l~~w-~~~g-----~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~ 265 (366)
T PF10460_consen 211 CSLTAW-SSFG-----DSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAI 265 (366)
T ss_pred cceeec-CCCc-----cccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHH
Confidence 222111 1111 1235799999999999888899988777752 12345555554443
No 22
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=94.87 E-value=0.016 Score=56.24 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCcccccc--CCchhHhHHHHHHHHHHHH
Q psy1463 440 TIVAHELAHQWFGNLVTLAW--WNDLWLNEGFASYIEYFGV 478 (947)
Q Consensus 440 ~viaHElAHQWFGnlVT~~~--W~d~WLnEGfAtY~~~~~~ 478 (947)
.+++||.+||=..|.=-..- -.-.|+.||||+|+|....
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 58999999999776522211 2238999999999998666
No 23
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=90.91 E-value=1.2 Score=47.11 Aligned_cols=102 Identities=20% Similarity=0.306 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhhhcccCCCCeeec
Q psy1463 435 KERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVE 514 (947)
Q Consensus 435 ~~~i~~viaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi~~~ 514 (947)
+..+.-+|.||++|-|=.+--. -.--||-||+|.|.-..+-- .-+.|. .|...
T Consensus 93 ~~Ei~Gvl~HE~~H~~Q~~~~~---~~P~~liEGIADyVRl~aG~-~~~~w~----------------------~p~~~- 145 (205)
T PF04450_consen 93 RDEIIGVLYHEMVHCWQWDGRG---TAPGGLIEGIADYVRLKAGY-APPHWK----------------------RPGGG- 145 (205)
T ss_pred HHHHHHHHHHHHHHHhhcCCCC---CCChhheecHHHHHHHHcCC-CCcccc----------------------CCCCC-
Confidence 4678899999999988655422 23569999999999865311 111111 11100
Q ss_pred cCCchhhhhhccccccchHHHHHHHHHh-hhCHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q psy1463 515 VSHPDEITEIFDKISYSKGSSLLRMAEH-FLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTN 576 (947)
Q Consensus 515 v~~~~~i~~~F~~i~Y~KGa~vL~ML~~-~lGee~F~~~Lr~Yl~~~~~~na~~~Df~~~l~~ 576 (947)
..++ -.|.-.|.+|..|+. ..|+. |-+-|..=+++..| +.+++|..+--
T Consensus 146 --------~~wd-~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~~l~G 195 (205)
T PF04450_consen 146 --------DSWD-DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWKELLG 195 (205)
T ss_pred --------CCcc-cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHHHHHC
Confidence 1122 368888999999998 66653 55666666666666 56677766653
No 24
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=90.06 E-value=0.15 Score=49.13 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhcCcccccc-----------CCchhHhHHHHHHHHHHHHHhh
Q psy1463 438 IATIVAHELAHQWFGNLVTLAW-----------WNDLWLNEGFASYIEYFGVDSV 481 (947)
Q Consensus 438 i~~viaHElAHQWFGnlVT~~~-----------W~d~WLnEGfAtY~~~~~~~~~ 481 (947)
...+++||.-|.|-+--+-++. -+.+|+-|||++|++.+.....
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 3568999999999876665544 3568999999999999887654
No 25
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=82.52 E-value=1.4 Score=47.20 Aligned_cols=42 Identities=38% Similarity=0.422 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhh
Q psy1463 434 HKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSV 481 (947)
Q Consensus 434 ~~~~i~~viaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~ 481 (947)
+...++.+|-||+|||=|.- -+|.=+||+||++.|...+++-
T Consensus 193 dd~~lA~LIFHELAHQk~Y~------~~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 193 DDTYLASLIFHELAHQKIYV------NNDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred ChHHHHHHHHHHHhhheEee------cCcchHhHHHHHHHHHHhHHHH
Confidence 45678899999999996642 2577899999999998877653
No 26
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=81.69 E-value=1.6 Score=49.09 Aligned_cols=41 Identities=34% Similarity=0.463 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhh
Q psy1463 435 KERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSV 481 (947)
Q Consensus 435 ~~~i~~viaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~ 481 (947)
...++.+|.||+|||=+. . -+|.=+||+||++.+...+...
T Consensus 162 ~~~LA~LIfHELaHq~~Y----v--~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 162 DGELARLIFHELAHQTLY----V--KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred chHHHHHHHHHHhhceee----c--CCCchhhHHHHHHHHHHHHHHH
Confidence 456889999999999432 1 2577899999999998877654
No 27
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=73.93 E-value=7.5 Score=38.80 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=38.3
Q ss_pred CCceeeeeeEEecCCCcEEEEEecCcccCCCCeEEEEEEEEEEecCCcCcccc
Q psy1463 303 EGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYR 355 (947)
Q Consensus 303 ~g~~i~~~~~~~~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g~i~~~~~G~y~ 355 (947)
.|+.+++..+..+.+++.+.|.+++ |+.||+ +++|.++..-+....|.|.
T Consensus 73 ~g~~ipl~~v~~~~~~~~i~I~f~~-PV~pG~--tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 73 RGESIPLAEVEWDEDGRTITITFDE-PVPPGT--TVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred cCCccCceEEEEcCCCCEEEEEeCC-CCCCCC--EEEEEEEeeeCCCCCCeEE
Confidence 3777776778888899999999999 999998 5666665544555567764
No 28
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=73.84 E-value=7 Score=40.95 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHhhcCccccc----cCCchhHhHHHHHHHHHHHHHhhc
Q psy1463 434 HKERIATIVAHELAHQWFGNLVTLA----WWNDLWLNEGFASYIEYFGVDSVE 482 (947)
Q Consensus 434 ~~~~i~~viaHElAHQWFGnlVT~~----~W~d~WLnEGfAtY~~~~~~~~~~ 482 (947)
....+..++|||+.|.+--..+..+ .--|..+.||+|.+++.....+..
T Consensus 61 ~~~~l~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 61 SLEELPALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 4457889999999999644333211 123667899999999987766554
No 29
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=59.05 E-value=12 Score=39.33 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhh
Q psy1463 439 ATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSV 481 (947)
Q Consensus 439 ~~viaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~ 481 (947)
..++|||+.|-|.- ..--.--+.++-||+++.+++++++..
T Consensus 94 gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 57899999999962 111112267999999999999999743
No 30
>KOG1932|consensus
Probab=50.97 E-value=14 Score=47.40 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=60.0
Q ss_pred hHHHHHHHHhcccccceeeccCCCCceeEecchhhhhhhcccccchhHHHHHHHHHhCCCCCCCCcCEEEeCCCCCcccc
Q psy1463 838 FMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAME 917 (947)
Q Consensus 838 ~~styL~AL~~s~~~~~~~~~~~~~~iri~~r~~~~~~~~yal~i~~~il~~~e~~f~~~ypl~KlD~vavPdf~~gaME 917 (947)
++..--.|||+|.|..... ....++..+|-|.+..-....--...++++|||++++..||++-+-+|+||.-..--|.
T Consensus 240 PvA~~~I~~AiG~F~~~~~--P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~ 317 (1180)
T KOG1932|consen 240 PVAPSNIGFAIGPFKSYVE--PSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISS 317 (1180)
T ss_pred cCCccccceeeccccccCC--CccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeee
Confidence 4433356788888766532 23456777777755443333334567889999999999999999999999986555444
Q ss_pred chhhhhhhhhHH
Q psy1463 918 NFGLITFRTAIL 929 (947)
Q Consensus 918 NwGlity~e~~l 929 (947)
-..|.++.-+.|
T Consensus 318 ~asl~I~st~lL 329 (1180)
T KOG1932|consen 318 YASLSIFSTSLL 329 (1180)
T ss_pred cceeeeeecccc
Confidence 445555544443
No 31
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=39.86 E-value=41 Score=30.93 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=31.3
Q ss_pred CCEEEEEcC-CcE--EEEEEeeeccccccCcCCCCCceeeeeeEEecCCCcEEEEEecCcccCCCCeEEEEEEEEE
Q psy1463 272 TNNITLHMN-DLT--ILERSIKQVDNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVG 344 (947)
Q Consensus 272 t~~I~Lha~-~L~--I~~v~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g 344 (947)
.++|.|... .++ ...+.+... +|+.+.......+.+...+++.++. +|.+|. |+| .|+.
T Consensus 19 P~~v~L~F~e~v~~~~s~v~v~~~----------~g~~v~~~~~~~~~~~~~~~~~l~~-~l~~G~-YtV--~wrv 80 (97)
T PF04234_consen 19 PEEVTLTFSEPVEPGFSSVTVTDP----------DGKRVDLGEPTVDGDGKTLTVPLPP-PLPPGT-YTV--SWRV 80 (97)
T ss_dssp -SSEEEEESS---CCC-EEEEEEE----------EETTSCTCEEEEEESTTEEEEEESS----SEE-EEE--EEEE
T ss_pred CCEEEEEeCCCCccCccEEEEEcC----------CCceeecCcceecCCceEEEEECCC-CCCCce-EEE--EEEE
Confidence 355666642 333 556666554 4555544334444466889999998 899996 654 4554
No 32
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=33.48 E-value=1e+02 Score=36.06 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhhhcccCCCCeeeccCCchh
Q psy1463 441 IVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDE 520 (947)
Q Consensus 441 viaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~~ 520 (947)
.|..++| |+|.-.... --+|||.|+|..+.++.+++.+..+-+.++++.++. .+......|.. +
T Consensus 252 ~ivR~ea-~YF~PQ~qT-----kVMNEGWAtfWHytiln~lydE~~~~~~~~lEfL~~---h~~Vv~qp~~~----~--- 315 (495)
T COG2719 252 RIVRKEA-QYFYPQRQT-----KVMNEGWATFWHYTILNHLYDEGKLTERAMLEFLKS---HTNVVFQPPYN----S--- 315 (495)
T ss_pred HHHHHHH-HHhcchHHH-----HHhhhhHHHHHHHHHHHhhhhhcccChHHHHHHHHh---cCCeeecCCCC----C---
Confidence 4455544 455443333 268999999999999999887766656665554432 11111111221 1
Q ss_pred hhhhcccc-ccchHHHHHHHHHh
Q psy1463 521 ITEIFDKI-SYSKGSSLLRMAEH 542 (947)
Q Consensus 521 i~~~F~~i-~Y~KGa~vL~ML~~ 542 (947)
..|..| .|..|..++.-++.
T Consensus 316 --p~ys~iNPYyLGf~m~~DI~~ 336 (495)
T COG2719 316 --PSYSGINPYYLGFAMFQDIER 336 (495)
T ss_pred --ccccCCChHHHhHHHHHHHHH
Confidence 223333 68899988888743
No 33
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=33.13 E-value=32 Score=34.26 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q psy1463 434 HKERIATIVAHELAHQWFG 452 (947)
Q Consensus 434 ~~~~i~~viaHElAHQWFG 452 (947)
....+..+|.|||+|.|..
T Consensus 56 ~~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 56 PEEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3457789999999999974
No 34
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=32.36 E-value=38 Score=38.39 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhcCccccccCCchhHhHHHHHHHHHHHHHhh
Q psy1463 438 IATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSV 481 (947)
Q Consensus 438 i~~viaHElAHQWFGnlVT~~~W~d~WLnEGfAtY~~~~~~~~~ 481 (947)
.-.++|||+|||= -...|+=|.|+++++..+-
T Consensus 196 ~P~T~~HElAHq~------------G~a~E~EANFiayLac~~s 227 (318)
T PF12725_consen 196 LPFTICHELAHQL------------GFASEDEANFIAYLACINS 227 (318)
T ss_pred ccHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcC
Confidence 3468999999993 2457999999999887654
No 35
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=31.44 E-value=32 Score=34.19 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHhhc
Q psy1463 435 KERIATIVAHELAHQWFG 452 (947)
Q Consensus 435 ~~~i~~viaHElAHQWFG 452 (947)
...+..+|.|||||.|..
T Consensus 56 ~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 56 RDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 356778999999999864
No 36
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=31.30 E-value=30 Score=35.48 Aligned_cols=13 Identities=46% Similarity=0.480 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHh
Q psy1463 438 IATIVAHELAHQW 450 (947)
Q Consensus 438 i~~viaHElAHQW 450 (947)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 3567999999996
No 37
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=29.87 E-value=34 Score=35.64 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHhhcC
Q psy1463 433 YHKERIATIVAHELAHQWFGN 453 (947)
Q Consensus 433 ~~~~~i~~viaHElAHQWFGn 453 (947)
-....+..++.|||||.++|+
T Consensus 77 l~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCC
Confidence 445678899999999999987
No 38
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=28.50 E-value=3.3e+02 Score=25.54 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=31.2
Q ss_pred CCceeeeeeEEecCCCcEEEEEecCcccCCCCeEEEEEEEEE
Q psy1463 303 EGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVG 344 (947)
Q Consensus 303 ~g~~i~~~~~~~~~~~~~L~I~L~~~~L~~G~~y~L~I~y~g 344 (947)
+|....+..+..+.....+.++|.. ++..|+ .+++.|..
T Consensus 59 nG~~n~Vt~VsV~~s~ktVTLTL~~-~V~~Gq--~VTVsYt~ 97 (101)
T TIGR02059 59 NGAPNTVTSVSLGGSNTTITLTLAQ-VVEDGD--EVTLSYTK 97 (101)
T ss_pred CCcEeeEEEEEEcCcccEEEEEecc-cccCCC--EEEEEeeC
Confidence 4566666777777777889999999 999998 68888874
No 39
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=26.46 E-value=47 Score=30.61 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhcCcc
Q psy1463 436 ERIATIVAHELAHQWFGNLV 455 (947)
Q Consensus 436 ~~i~~viaHElAHQWFGnlV 455 (947)
.+...+++|||+|.+++..-
T Consensus 40 ~~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 40 ERQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 33467999999999987654
No 40
>KOG2661|consensus
Probab=24.38 E-value=50 Score=37.12 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCc
Q psy1463 433 YHKERIATIVAHELAHQWFGNL 454 (947)
Q Consensus 433 ~~~~~i~~viaHElAHQWFGnl 454 (947)
.+...++.+++||+|||=-+..
T Consensus 270 k~ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 270 KDDDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred cChHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999976543
No 41
>PRK04860 hypothetical protein; Provisional
Probab=24.29 E-value=39 Score=34.37 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHhh
Q psy1463 434 HKERIATIVAHELAHQWF 451 (947)
Q Consensus 434 ~~~~i~~viaHElAHQWF 451 (947)
....+..+|+||+||.|-
T Consensus 59 ~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 59 QQAFIDEVVPHELAHLLV 76 (160)
T ss_pred cHHHHHhHHHHHHHHHHH
Confidence 446678999999999974
No 42
>PF10772 DUF2597: Protein of unknown function (DUF2597); InterPro: IPR019708 This entry is represented by Bacteriophage HP1, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents proteins with unknown function and is restricted to Proteobacteria. One of the proteins is annotated to a predictive tail tube protein.
Probab=24.25 E-value=56 Score=31.79 Aligned_cols=27 Identities=44% Similarity=0.741 Sum_probs=16.9
Q ss_pred ccCCC-CCcceeeccc-cccCCCeEEEee
Q psy1463 105 INLDP-GLDVEVKKAK-AVKTPDFVHINV 131 (947)
Q Consensus 105 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 131 (947)
+|.|| |-+.-..|-| -|..|||||||-
T Consensus 102 LdiD~kGg~~~thKik~~VTsPdFV~InG 130 (134)
T PF10772_consen 102 LDIDPKGGSKSTHKIKFDVTSPDFVRING 130 (134)
T ss_pred eecCCCCCcceeEEcceEecCCCeEEECC
Confidence 34444 3344444444 578899999983
No 43
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=23.12 E-value=49 Score=31.16 Aligned_cols=15 Identities=40% Similarity=0.787 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHh
Q psy1463 436 ERIATIVAHELAHQW 450 (947)
Q Consensus 436 ~~i~~viaHElAHQW 450 (947)
.....+++||++|-|
T Consensus 77 KGC~~TL~HEL~H~W 91 (141)
T PHA02456 77 KGCRDTLAHELNHAW 91 (141)
T ss_pred cchHHHHHHHHHHHH
Confidence 446789999999999
No 44
>PRK10301 hypothetical protein; Provisional
Probab=21.95 E-value=2.3e+02 Score=27.50 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=17.4
Q ss_pred CCcEEEEEecCcccCCCCeEEEEEEEEE
Q psy1463 317 INQFMVFELEDEQFWATKRYVLYIKYVG 344 (947)
Q Consensus 317 ~~~~L~I~L~~~~L~~G~~y~L~I~y~g 344 (947)
+...+++.++. +|.+|. |+| +|+.
T Consensus 84 ~~~~~~v~l~~-~L~~G~-YtV--~Wrv 107 (124)
T PRK10301 84 DQKQLIVPLAD-SLKPGT-YTV--DWHV 107 (124)
T ss_pred CCcEEEEECCC-CCCCcc-EEE--EEEE
Confidence 34568889988 899997 655 4554
Done!