RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1463
(947 letters)
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 404 bits (1039), Expect = e-126
Identities = 125/467 (26%), Positives = 198/467 (42%), Gaps = 92/467 (19%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
E S+L+D + S+ K + ++AHELAHQWFGNLVT+ WWND+WLNEGFA Y+E V+
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVN 405
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
+ + D F ++ V D+L SS P+ P +I E+FD++SY+KG+ +L M
Sbjct: 406 ATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNM 464
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
+ FL E + G+ +Y+KK + ++ +LW+ L+N+ E
Sbjct: 465 LKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLE------------------- 505
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSA 659
++ + + + L EN +V+ +M TWTLQ G P++ V +D S
Sbjct: 506 ----SDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDG--CSL 559
Query: 660 VVKQVR---------GYYRVLYDEKNWY--LIIATLRNSTTYNTI--------------- 693
++Q R +R L + W+ L +T ++ + I
Sbjct: 560 RLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPEKTS 619
Query: 694 -----------------------------------HLLNRAQLIDDAMNLARAGLLDYKI 718
+R LI D L AG L
Sbjct: 620 WVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDK 679
Query: 719 ALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAY---FDKYKKYLLHIIRPMYESIGF 775
ALD+T YLQ+ET + L + RR + K+YLL +P+ + +
Sbjct: 680 ALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSW 739
Query: 776 DGSPKDDQMTVYKRVDVLNRACILGLKDCVQKALSKYQNWISNPSKI 822
K R +L AC L C+QKA + W+ + K+
Sbjct: 740 S--DKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKL 784
Score = 195 bits (497), Expect = 2e-51
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQV 292
RLP+ V PL Y + + P + F+ I V VS T I LH DL I +++
Sbjct: 68 RLPSVVIPLHYDLFVHPN--LTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSE 125
Query: 293 DNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRG 352
++ S +V + ++ + + E+ +Y + + + KL D G
Sbjct: 126 ED------SRYMKPGKELKVLSYPAHEQIALLV-PEKLTPHLKYYVAMDFQAKLGDGFEG 178
Query: 353 LYRSSYE-VNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPL 411
Y+S+Y + R + + F+ T AR AFPCFDEP KA F+I I R A+SNMP
Sbjct: 179 FYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPK 238
Query: 412 KDGNQSDPENSMLYDE 427
+ E +L D
Sbjct: 239 V--KTIELEGGLLEDH 252
Score = 161 bits (410), Expect = 7e-41
Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 816 ISN---PSKIERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEY 872
+SN IE G + DHF+ TV MSTYLVA V DF +++ +
Sbjct: 233 LSNMPKVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDK 292
Query: 873 INQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
NQT Y+L +LL ++EKYFD +YPL K D+IA+PDF GAMEN+GLIT+R L
Sbjct: 293 RNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSL 349
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 396 bits (1020), Expect = e-124
Identities = 118/463 (25%), Positives = 200/463 (43%), Gaps = 90/463 (19%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
E+++L+D + S+ K I VAHELAHQWFGNLVT+ WWNDLWLNEGFA ++E+ V
Sbjct: 284 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVS 343
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
K+ D F + + +DAL SSHPV V +P +I E+FD +SY KG+ +L M
Sbjct: 344 VTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNM 402
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
+L+ + K G+ +Y++K + ++ +LW + +
Sbjct: 403 LREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPT------------------- 443
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSA 659
G + ++ E +DV+T+MNTWTLQ GFP+I + +
Sbjct: 444 ----DGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRG--RNV 497
Query: 660 VVKQVRGYYR-------------------------------------VLYDEKNWYLI-- 680
+KQ +L +E W
Sbjct: 498 HMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVEWIKFNV 557
Query: 681 ------------------IATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDV 722
L+ + + + +RA LI++A L G L + ALD+
Sbjct: 558 GMNGYYIVHYEDDGWDSLTGLLKGT--HTAVSSNDRASLINNAFQLVSIGKLSIEKALDL 615
Query: 723 TAYLQYETELVPWRSAMQALGYIEGQLYRRAYFD---KYKKYLLHIIRPMYESIGFDGSP 779
+ YL++ETE++P + L + + +R + ++K +L+ ++R + + +
Sbjct: 616 SLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWT--D 673
Query: 780 KDDQMTVYKRVDVLNRACILGLKDCVQKALSKYQNWISNPSKI 822
+ R +L AC+ + CVQ+A ++ W + +
Sbjct: 674 EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNL 716
Score = 193 bits (492), Expect = 4e-51
Identities = 60/181 (33%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQV 292
RLP V P+ Y + I TF G + + SQ T+ I LH + L I ++++
Sbjct: 8 RLPEYVIPVHYDLLIHAN--LTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKG 65
Query: 293 DNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRG 352
E S QV + + E Y + I Y G L++ G
Sbjct: 66 AG--------ERLSEEPLQVLEHPRQEQIALLA-PEPLLVGLPYTVVIHYAGNLSETFHG 116
Query: 353 LYRSSYEV-NNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPL 411
Y+S+Y R + ++QF+ T AR AFPCFDEP+ KA F+I I R P AISNMPL
Sbjct: 117 FYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPL 176
Query: 412 K 412
Sbjct: 177 V 177
Score = 161 bits (408), Expect = 1e-40
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 816 ISN--PSKIERTGP-YVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEY 872
ISN K + DHF TV MSTYLVA ++DF V++ +
Sbjct: 171 ISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDK 230
Query: 873 INQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
INQ Y+LD LL+++E YF YPL K D+ A+PDF +GAMEN+GL T+R + L
Sbjct: 231 INQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESAL 287
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 376 bits (967), Expect = e-117
Identities = 96/453 (21%), Positives = 174/453 (38%), Gaps = 117/453 (25%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
E M E S K A ++AHE+AHQWFG+LVT+ WWNDLWLNE FA+++ Y +D
Sbjct: 242 EIYMDIAEN-SAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMD 300
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
++ W F V D+LK++HP+ V+V PDEI++IFD+ISY KG+S+LRM
Sbjct: 301 TLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRM 360
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
E + E + G+ KY+ G++ ++LW + + +
Sbjct: 361 IEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSGK------------------- 401
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSA 659
V+ +M W G+PVI++ R+
Sbjct: 402 -------------------------------PVKRVMEYWIKNPGYPVIKLKRNG--RKI 428
Query: 660 VVKQVR-----------------------------------------------GYYRVLY 672
+ Q R G+YRVLY
Sbjct: 429 TMYQTRFLLNGEEEGRWPVPVNIKKKDGVERILLEDEASIEADGLIKINADSAGFYRVLY 488
Query: 673 DEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETEL 732
D+ + ++ R + L+R L+DD +G +D + + +
Sbjct: 489 DDATFSDVMGHYR------DLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDH 542
Query: 733 VPWRSAMQALGYIEGQLYRRAYFDKYKKYLLHIIRPMYESIGFDGSPKDDQMTVYKRVDV 792
+ + + Y+ A+ D + + ++ + ++ R
Sbjct: 543 NVITAIVGQMEYLRMLT--HAFDDDARAFCRSRMQFLTGKQD------ENLKIALGR--- 591
Query: 793 LNRACILGLKDCVQKALSKYQNWISNPSKIERT 825
++R ++ + ++ ++++ S ++ +
Sbjct: 592 VSRLYVMVDESYAEEMSKLFKDFDSAEPEMRSS 624
Score = 167 bits (425), Expect = 5e-43
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 238 VKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRSA 297
++ Y + + + TF G I + +I L L I +V+ R
Sbjct: 1 MEVEKYDLTLDFDI--QKRTFNGTETITAD----AGDIVLDAVGLQINW---MKVNGRDT 51
Query: 298 NWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRSS 357
+ D T G ++ + I + GK++D + G+Y +
Sbjct: 52 AFTYDGQTVRAPGD---------------------SQPQKIEISFAGKVSDSLSGIYYAG 90
Query: 358 YEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQS 417
+ ++ + F+ATDARR FPC D P+ KA FAI++ + AISNMP K S
Sbjct: 91 R-----ENGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEVS 145
Query: 418 D 418
+
Sbjct: 146 E 146
Score = 157 bits (398), Expect = 1e-39
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 816 ISN-PSKIERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYIN 874
ISN P K FQ+T MSTYL+ + + F + + +
Sbjct: 134 ISNMPPKRIEVSERKVVEFQDTPRMSTYLLYVGIGKFRYE---YEKYRDIDLILASLKDI 190
Query: 875 QTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
++ Y LD+ + ++++E YF Y L K +I++P+FGAGAMEN+G ITFR +
Sbjct: 191 RSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFREIYM 245
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 202 bits (515), Expect = 2e-55
Identities = 51/235 (21%), Positives = 79/235 (33%), Gaps = 51/235 (21%)
Query: 434 HKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVV 493
+ + ++AHELAH W GNLVT W DLWLNEGF SY+E +++V T + +
Sbjct: 290 GDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQAL 349
Query: 494 ---DELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLK 550
D + LDA + + ++ PD + F + Y KG L E E
Sbjct: 350 GAQDLNAEILELDASDTQLYIDLKGRDPD---DAFSGVPYVKGQLFLMYLEEKFGRERFD 406
Query: 551 LGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKKAMGSSTQA 610
+ +Y A S +L +
Sbjct: 407 AFVLEYFDSHAFQSLGTDNFVKYLKANLTDKYP--------------------------- 439
Query: 611 ELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQVR 665
N+ + +N W + G P +A + KQ+
Sbjct: 440 ------------------NIVSDNEINEWIFKAGLPSYAPQPTSNAFKVIDKQIN 476
Score = 135 bits (342), Expect = 3e-33
Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 19/188 (10%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVE-VSQTTNNITLHMNDLTILERSIKQ 291
VK + + + + G + ++ + + L DL I K
Sbjct: 21 ANYDQVKATHVYLDLNVDF--DKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAK- 77
Query: 292 VDNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMR 351
+ + + +L + + Y ++
Sbjct: 78 ----------NSQGQWVKVNYDLAKRDDVLGSKLTINT--PLNAKKVRVYYNS--TEKAT 123
Query: 352 GLYRSSYE-VNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMP 410
GL S E ++ + SQ QA AR P D PS++ + I ++ A+ +
Sbjct: 124 GLQWLSAEQTAGKEKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSAN 183
Query: 411 LKDGNQSD 418
+ G + D
Sbjct: 184 NEPGTERD 191
Score = 115 bits (289), Expect = 1e-26
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 816 ISNPSKIERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQ 875
+ + + T F + YL+A+ V D + + +++ ++
Sbjct: 179 VMSANNEPGTERDGDYFFSMPQAIPPYLIAIGVGDLEFKAMSHQ----TGIYAESYILDA 234
Query: 876 TAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALP-DFGAGAMENFGLITFRTAIL 929
D ++ E+ + Y + D++ LP F G MEN L ++
Sbjct: 235 AVAEFDDTQAMIDKAEQMYGK-YRWGRYDLLMLPPSFPFGGMENPRLSFITPTVV 288
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 202 bits (515), Expect = 2e-55
Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 47/232 (20%)
Query: 434 HKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFVV 493
+ ++ ++AH+++H W GNLVT W+ WLNEG Y+E + +
Sbjct: 291 GDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALG 350
Query: 494 DELQNVFFLDALKSSHPVHVEVSHPDEI--TEIFDKISYSKGSSLLRMAEHFLTTEVLKL 551
+ + +HP V +I + + Y KG +LL E L
Sbjct: 351 GWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGP---- 406
Query: 552 GLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKKAMGSSTQAE 611
++ L+ Y++K + S T +
Sbjct: 407 -------------------------------------EIFLGFLKAYVEKFSYKSITTDD 429
Query: 612 LWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQ 663
FL + + ++ + N W G P I+ D +A +
Sbjct: 430 WKDFLYSYFKD----KVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL 477
Score = 132 bits (335), Expect = 2e-32
Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 19/177 (10%)
Query: 238 VKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQ-TTNNITLHMNDLTILERSIKQVDNRS 296
+ ++ T G + V+ + ++ L DLTI + ++ +
Sbjct: 22 CRTKHLHLRCSVDF--TRRTLTGTAALTVQSQEDNLRSLVLDTKDLTI--EKVV-INGQE 76
Query: 297 ANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRS 356
+ E R M L +K + I+ + + + L
Sbjct: 77 VKYALGE---------RQSYKGSPMEISLPIA---LSKNQEIVIEISFETSPKSSALQWL 124
Query: 357 SYE-VNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLK 412
+ E + + + SQ QA R PC D PS+K + + + A+ +
Sbjct: 125 TPEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRD 181
Score = 116 bits (292), Expect = 5e-27
Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 816 ISNPSKIERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQ 875
+ F + V + YL+A+ V R VWS +E + +
Sbjct: 180 RDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESR----QIGPRTLVWSEKEQVEK 235
Query: 876 TAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALP-DFGAGAMENFGLITFRTAIL 929
+AY +LK E Y + D++ LP F G MEN L +L
Sbjct: 236 SAYEFSETESMLKIAEDLG-GPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL 289
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 200 bits (510), Expect = 1e-54
Identities = 57/367 (15%), Positives = 105/367 (28%), Gaps = 68/367 (18%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
+ +D ++AHELAH W GNLVT WN WLNEG+ Y+E +
Sbjct: 286 PTLLAHDR---------SNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIG 336
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHV---EVSHPDEITEIFDKISYSKGSSL 536
++ ++ +D++K ++ + + F + Y KG +L
Sbjct: 337 AIHGEPTRHFSALIGWSDLQNSIDSMKDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNL 396
Query: 537 LRMAEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQ 596
L E L + ++
Sbjct: 397 LFHLETILGGK-----------------------------------------AEFDPFIR 415
Query: 597 KYIKKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDA 656
Y KK A S + L E + + TW + G P A
Sbjct: 416 HYFKKFAKKSLDTFQFLDTLYEFYPE----KKEILDSVDWETWLYKPGMPPRPHFITALA 471
Query: 657 GSAVV---KQVRGYYRVLYDEKNWYLIIAT-LRNSTTYNTIHLLNRAQLIDDAMNLARAG 712
+ K V + E A +++ + + L + +
Sbjct: 472 DNVYQLADKWVEMAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLETLTQNGHSNKKPKDF 531
Query: 713 LLDYKIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRR--AYFDKYKKYLLHI----- 765
Y+ +V ++A + Q++ + + +L +
Sbjct: 532 DWAKFPVASRALLDIYQDNIVKSQNAEVVFKMFKFQIFAKLQEEYKHLADWLGTVGRMKF 591
Query: 766 IRPMYES 772
+RP Y
Sbjct: 592 VRPGYRL 598
Score = 138 bits (350), Expect = 4e-34
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 25/185 (13%)
Query: 233 RLPTGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQ----TTNNITLHMNDLTILERS 288
L + + G V ++ ++ + L + L + +
Sbjct: 23 SNYKDFAVLHTDLNLSVSF--EKSAISGSVTFQLKKLHEGKNKSDELHLDTSYLDV--QE 78
Query: 289 IKQVDNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLND 348
+ +D A+++ ++ + + L + L I++ D
Sbjct: 79 VH-IDGSKADFQIEQR-------------KEPLGSRLVINNASCNDNFTLNIQFRT--TD 122
Query: 349 QMRGLYRSSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISN 408
+ L + + + + SQ +A AR FPCFD PS+K+ F SI P S
Sbjct: 123 KCTALQWLNSKQTKGGKPYVFSQLEAIHARSLFPCFDTPSVKSTFTASI-ESPLPVVFSG 181
Query: 409 MPLKD 413
+ ++D
Sbjct: 182 IRIED 186
Score = 122 bits (308), Expect = 5e-29
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 816 ISNPSKIERTGPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQ 875
S + + F++ V + YL+ +A D S V++ +
Sbjct: 179 FSGIRIEDTSKDTNIYRFEQKVPIPAYLIGIASGDLSSA----PIGPRSTVYTEPFRLKD 234
Query: 876 TAYSLDIGPRLLKYFEKYFDYHYPLEKTD-MIALPDFGAGAMENFGLITFRTAIL 929
+ + + + Y D ++ + + G ME+ + +L
Sbjct: 235 CQWEFENDVEKFIQTAEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLL 289
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 163 bits (413), Expect = 1e-43
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 662 KQVRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALD 721
+ GYY V Y++ W + L+ T+ + +RA LI++A L G L + ALD
Sbjct: 74 VGMNGYYIVHYEDDGWDSLTGLLK--GTHTAVSSNDRASLINNAFQLVSIGKLSIEKALD 131
Query: 722 VTAYLQYETELVPWRSAMQALGYIEGQLYRR---AYFDKYKKYLLHIIRPMYESIGFDGS 778
++ YL++ETE++P + L + + +R ++K +L+ ++R + + +
Sbjct: 132 LSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWT-- 189
Query: 779 PKDDQMTVYKRVDVLNRACILGLKDCVQKALSKYQNWISNPSKI 822
+ R +L AC+ + CVQ+A ++ W + +
Sbjct: 190 DEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNL 233
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 156 bits (397), Expect = 2e-39
Identities = 55/239 (23%), Positives = 85/239 (35%), Gaps = 46/239 (19%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
NS+L ++ S ++ RI T+V HE HQ+ GN VTL W L L EG + E +
Sbjct: 277 ANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSE 336
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
+ T + V F D+ SHP+ E + + Y KGS ++RM
Sbjct: 337 EMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPES--YVSMENFYTTTVYDKGSEVMRM 394
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
L E K G YIKK ++T + + A
Sbjct: 395 YLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQA---------------------- 432
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGS 658
++M+ + ++ W Q+G P + +YDA
Sbjct: 433 ---------------------YKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEK 469
Score = 114 bits (286), Expect = 6e-26
Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 32/182 (17%)
Query: 239 KPLAYKIKIL---PFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNR 295
KP + I + + + + + + ++ L I E SI
Sbjct: 10 KPSGFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLV 69
Query: 296 SANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYR 355
+ + LTI F F + + + + + N + GLY+
Sbjct: 70 EGEEYTYDNEFLTI----------FSKFVPKSK-----FAFSSEVIIHPETNYALTGLYK 114
Query: 356 SSYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISI----GRLPNMTAISNMPL 411
S I+ SQ +AT RR D P + AK+ +++ + P +SN
Sbjct: 115 SKN--------IIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYP--VLLSNGDK 164
Query: 412 KD 413
+
Sbjct: 165 VN 166
Score = 106 bits (267), Expect = 1e-23
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 810 SKYQNWISNPSKIERT---GPYVWDHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGS--- 863
KY +SN K+ G F + YL A+ D H +
Sbjct: 153 EKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKK 212
Query: 864 --FRVWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGL 921
V+S E+Y+++ ++L+ + + + E YF Y L + +++A+ DF GAMEN GL
Sbjct: 213 VELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGL 272
Query: 922 ITFRTAIL 929
F L
Sbjct: 273 NIFNANSL 280
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 142 bits (359), Expect = 8e-35
Identities = 44/244 (18%), Positives = 77/244 (31%), Gaps = 53/244 (21%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
+L D + +T+ E I ++V HE H W GN VT W L L EG + +
Sbjct: 269 TKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSG 328
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
+ + Q+ F DA ++HPV +E+ + Y KG+ ++RM
Sbjct: 329 DRASRAVRRIENIRLLRQHQFPEDAGPTAHPVRPA--SYEEMNNFYTMTVYEKGAEVVRM 386
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
L E + G++ Y ++ + T +
Sbjct: 387 YHTLLGEEGFQKGMKLYFQRHDGQAVTCDDFR---------------------------- 418
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGSA 659
AM + ++++ W Q G PV+
Sbjct: 419 --AAMADAN--------------------GINLD-QFALWYSQAGTPVLEAEGRLKNNIF 455
Query: 660 VVKQ 663
+
Sbjct: 456 ELTV 459
Score = 99.6 bits (248), Expect = 2e-21
Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 33/184 (17%)
Query: 239 KPLAYKIKILPFLIE-NNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRSA 297
+ AY I + N + + + VE + + L +L S+K ++ +A
Sbjct: 12 QTPAYHILKTDLHFDINEPQTVVKSRLTVEPQRVGEPLVLD-GSAKLL--SVK-INGAAA 67
Query: 298 NWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRSS 357
++ + T LTI V ++ F +E + + + N + GLY S
Sbjct: 68 DYVLEGET-LTIAGVPSER------FTVE-----------VETEILPAENKSLMGLYASG 109
Query: 358 YEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISI--GRLPNMTAISNMPLKDGN 415
+ +Q + R+ D P + +KF +I + +SN DG
Sbjct: 110 G--------NLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGG 161
Query: 416 QSDP 419
+
Sbjct: 162 EFSD 165
Score = 90.7 bits (225), Expect = 1e-18
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 830 WDHFQETVFMSTYLVAMAVTDF-SHRVHNDDHSG---SFRVWSREEYINQTAYSLDIGPR 885
W +++ +YL A+ D + SG ++ E + ++++
Sbjct: 169 WVKWEDPFSKPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKN 228
Query: 886 LLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAIL 929
+K+ E F Y L+ ++A+ DF GAMEN GL F T +
Sbjct: 229 AMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFV 272
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 129 bits (325), Expect = 1e-30
Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 53/239 (22%)
Query: 420 ENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVD 479
+L +T+ I ++ HE H W GN VT W L L EG + +
Sbjct: 294 SKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSS 353
Query: 480 SVEHTWKIKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRM 539
+ + V F DA +HP+ + E+ + Y KG+ ++RM
Sbjct: 354 DLGSRAVNRINNVRTMRGLQFAEDASPMAHPIRPD--MVIEMNNFYTLTVYEKGAEVIRM 411
Query: 540 AEHFLTTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYI 599
L E + G+Q Y ++ ++T +
Sbjct: 412 IHTLLGEENFQKGMQLYFERHDGSAATCDDFVQ--------------------------- 444
Query: 600 KKKAMGSSTQAELWAFLTNAGHEMRTLPENMDVETIMNTWTLQTGFPVIRVARDYDAGS 658
AM ++ +L + W Q+G P++ V DY+ +
Sbjct: 445 ---AMEDASNVDL---------------------SHFRRWYSQSGTPIVTVKDDYNPET 479
Score = 91.5 bits (227), Expect = 6e-19
Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 37/187 (19%)
Query: 239 KPLAYKIKI--LPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRS 296
+ Y+I L F ++ T + V V + + L+ DL ++ S+ +++
Sbjct: 35 RAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLV--SVH-INDEP 91
Query: 297 ANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIKYVGKLNDQMRGLYRS 356
+E +L I + F L+ + + N + GLY+S
Sbjct: 92 WTAWKEEEGALVISNLPER-------FTLK-----------IINEISPAANTALEGLYQS 133
Query: 357 SYEVNNTKRWIMASQFQATDARRAFPCFDEPSLKAKFAISI----GRLPNMTAISNMPLK 412
+ +Q +A R D P + A+F I + P +SN
Sbjct: 134 GD--------ALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYP--FLLSNGNRV 183
Query: 413 DGNQSDP 419
+ +
Sbjct: 184 AQGELEN 190
Score = 88.8 bits (220), Expect = 4e-18
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 816 ISNPSKIERT---GPYVWDHFQETVFMSTYLVAMAVTDF-SHRVHNDDHSG---SFRVWS 868
+SN +++ + W +Q+ YL A+ DF R SG + ++
Sbjct: 177 LSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYV 236
Query: 869 REEYINQTAYSLDIGPRLLKYFEKYFDYHYPLEKTDMIALPDFGAGAMENFGLITFRTAI 928
+++ +++ +K+ E+ F Y L+ ++A+ F GAMEN GL F +
Sbjct: 237 DRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKY 296
Query: 929 L 929
+
Sbjct: 297 V 297
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 1e-09
Identities = 104/777 (13%), Positives = 206/777 (26%), Gaps = 272/777 (35%)
Query: 236 TGVKPLAYKIKILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSI---KQV 292
TG YK IL + F+ D+ + +SI +++
Sbjct: 11 TGEHQYQYK-DILSVFEDA---FVDN---------------FDCKDVQDMPKSILSKEEI 51
Query: 293 DNRSANWESDEGTSLTIGQVR---NDTINQFMVFELEDEQFWATKRY-----------VL 338
D+ + ++ GT + + + +F+ L + +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 339 YIKYVGKL-ND-------------QMRGLYRSSYEVNNT------------KRWIMASQF 372
YI+ +L ND L ++ E+ K W+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 373 QATDARRAFPCFDEPSLKAKFAISIGRLPNMTAISNMPLKDGNQSDPENSMLYDEQISTN 432
+ + F +++ + + M K Q DP + D +
Sbjct: 172 LSYKVQCKMDF-------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 433 YHKERIATIVAHELAHQWFGN-LVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKI---- 487
I + L + + N L+ L ++ N A F + KI
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVL---LNVQ-N---AKAWNAFNLSC-----KILLTT 272
Query: 488 KDIFVVDELQNVFFLDALKSSHPVHVEVS---HPDEITEIFDKISYSKGSSLLRMAEHFL 544
+ V D FL A ++H S PDE+ + K + L R L
Sbjct: 273 RFKQVTD------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---L 323
Query: 545 TTEVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKKAM 604
TT +L + + + + + K++ +
Sbjct: 324 TTNPRRLSI----------------IAESI----RDGLATWDNW--------KHVNCDKL 355
Query: 605 GSSTQAELWAFLTNAGHEMRTL-------PENMDV--ETIMNTWTLQTGFPVIRVARDYD 655
+ ++ L L A E R + P + + + W V+ V
Sbjct: 356 TTIIESSL-NVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 656 AGSAVVKQVRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLD 715
S V KQ + + I+L + + +++ L R+ ++D
Sbjct: 413 KYSLVEKQPKESTISIPS-------------------IYLELKVK-LENEYALHRS-IVD 451
Query: 716 -YKIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAYFDKYKKYLLHIIRPMYESIG 774
Y I + + P+ Y Y + + H
Sbjct: 452 HYNI----PKTFDSDDLIPPYLD-----QYF--------YS--HIGH--H---------- 480
Query: 775 FDGSPKDDQMTVYKRVDVLNRACILGLKDCVQKALSKYQN--WISNPSKIERTGPYVWDH 832
++MT+++ V + + ++ KI W
Sbjct: 481 LKNIEHPERMTLFRMV---------------------FLDFRFLEQ--KIRHDS-TAW-- 514
Query: 833 FQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLDIGPRLLKYFEK 892
N + L+ +L Y +
Sbjct: 515 -----------------------------------------NASGSILNTLQQLKFY-KP 532
Query: 893 YFDYHYPLEKTDMIALPDFGAGAMEN-----------FGLITFRTAILKEILRGCEK 938
Y + P + + A+ DF EN L+ AI +E + ++
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 58.3 bits (140), Expect = 1e-08
Identities = 81/526 (15%), Positives = 164/526 (31%), Gaps = 139/526 (26%)
Query: 479 DSVEHTWKIKDI-------FVVD-ELQNVFFLDALK---SSHPVHVEVSHPDEITE---I 524
++ EH ++ KDI FV + + ++V D K S + + D ++ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 525 FDKISYSKGSSLLRMAEHFLTTEVLKLG---LQKYIKKKAMGSSTQAELWAF----LTNA 577
F + SK M + F+ EVL++ L IK + S ++ L N
Sbjct: 68 FWTLL-SKQEE---MVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 578 GHEMRTL----PEKMDVLKLGLQ-----KYIKKKAMG----SSTQAEL------------ 612
+ L+ L K + + + ++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 613 ---WAFLTNAGHEMRTLPENM-DVETIMNTWTLQTGFPVIRVARDYDAGSAVVK---QVR 665
W L N + T+ E + + ++ + + A ++ + +
Sbjct: 183 KIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 666 GYYRVL------YDEKNWYL------IIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGL 713
Y L + K W I+ T R + + + +++ L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTL 298
Query: 714 LDYKIALDVTA-YLQYETELVPWRSAMQ----ALGYIEGQLYR--RAYFDKYKKY----L 762
+ + YL + +P R + L I + R A +D +K L
Sbjct: 299 TPDE-VKSLLLKYLDCRPQDLP-REVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKL 355
Query: 763 LHII------------RPMYESIG-FDGSPKDDQMTVYKRVDVLNRACIL---GLKDCVQ 806
II R M++ + F P + +L ++ +K V
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVF---PPSAHIPT----ILL---SLIWFDVIKSDVM 405
Query: 807 KALSKYQNWISNPSKIERTGPYVWDHFQETVF-MSTYLVAMAVTDFSHRVHNDDHSGSFR 865
++K + S +E+ + T+ S YL + + +H
Sbjct: 406 VVVNKLHKY----SLVEK------QPKESTISIPSIYLELKVKLENEYALHR-------S 448
Query: 866 VWSREEYINQTAYSLD--IGPRLLKYFEKYFDYH-YPLEKTDMIAL 908
+ + Y + D I P L +YF + +H +E + + L
Sbjct: 449 I--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Score = 51.8 bits (123), Expect = 1e-06
Identities = 111/767 (14%), Positives = 211/767 (27%), Gaps = 302/767 (39%)
Query: 144 ILLINTSLFAYKYYQCKATSDS---------------SP-----TRNLIAELFKVEEKTT 183
IL + F + CK D S T L L +E+
Sbjct: 21 ILSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 184 KAKFNGRLPTDVKPLAYRIK---ILPFLIENNF--TIAELFKVEEKTTKAKFNGRLP--T 236
+ L + K L IK P ++ + L+ + K + RL
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYL 138
Query: 237 GVKPLAYKIKILPFL----------------------IENNFTFLGEVWIHVEVSQTTNN 274
++ +++ + ++ F W++++ +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPET 197
Query: 275 ITLHMNDLTILERSIKQVD-NRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWAT 333
+ + L + Q+D N ++ + L I ++ E + +
Sbjct: 198 VLEMLQKL------LYQIDPNWTSRSDHSSNIKLRIHSIQA-----------ELRRLLKS 240
Query: 334 KRYV--LYIKYVGKLNDQMRGLYRSSYEVNNTKRW---------IMASQFQA-TDARRA- 380
K Y L + L + V N K W ++ ++F+ TD A
Sbjct: 241 KPYENCLLV-----LLN-----------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 381 ----------FPCFDEPSLKAKFA----ISIGRLPNMTAISNMPLKDGNQSDPENSMLYD 426
+K+ LP ++ P +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRR-------------- 329
Query: 427 EQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWK 486
+S IA + LA W+ ++ D + +
Sbjct: 330 --LSI------IAESIRDGLAT-----------WD----------NWKHVNCDKLTTIIE 360
Query: 487 IKDIFVVDELQNVFFLDALKSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHFLTT 546
L+ L+ P E ++FD++ S+ + H + T
Sbjct: 361 S-------------SLNVLE-----------PAEYRKMFDRL------SVFPPSAH-IPT 389
Query: 547 EVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKY--IKKKAM 604
+L L +W + + + M V+ L KY ++K+
Sbjct: 390 ILLSL------------------IWFDVIKS--------DVMVVVNK-LHKYSLVEKQPK 422
Query: 605 GSSTQAELWAFLTNAGH----EMRTLPENMDV--ETIMNTWTLQTGFPVIRVARDYDAGS 658
S+ E++ EN +I++ + + + +D+
Sbjct: 423 ESTISI----------PSIYLELKVKLENEYALHRSIVDHY---------NIPKTFDSDD 463
Query: 659 AVVKQVRGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDY-- 716
+ + Y +Y I + HL N + M L R LD+
Sbjct: 464 LIPPYLDQY---------FYSHIG-------H---HLKNIEH--PERMTLFRMVFLDFRF 502
Query: 717 ---KIALDVTAYLQYETELVPWRSAMQALGYIEGQLYRRAYFDKYKKYLLHIIRPMYESI 773
KI D TA+ A G I L + YK Y+
Sbjct: 503 LEQKIRHDSTAW--------------NASGSILNTLQQ---LKFYKPYI----------- 534
Query: 774 GFDGSPKDDQMTVYKRVDVLNRA---CILG-LKDCVQKALSKYQNWI 816
D PK +++ V +D L + I D ++ AL I
Sbjct: 535 -CDNDPKYERL-VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 5e-07
Identities = 110/737 (14%), Positives = 199/737 (27%), Gaps = 287/737 (38%)
Query: 29 SEGRILLNEVPLAVDVYHWLFPT------TSENPPPKYTRYSHNDPSSE----GRILL-- 76
S G + E L V + + P P + ++P++ G+ L
Sbjct: 12 SHGSL---EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 77 -NEV-PLAVDETTKMLNH--KDPQQNHTSENNI-----NLDPGLDVEVKKAKAVKTPDFV 127
+ V P V + ++LN + + + N+I L D + K K +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL------ 122
Query: 128 HINVKLLSVCLVVVLAILLINTSLFAYKYYQCKATSDSSPTRNLIAELFK-VEEKTTK-- 184
I Y + + + + LF+ V E +
Sbjct: 123 -------------------IKN------YITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 185 AKFNGRLPTD--VKPLA-----YRIKILPFLIENNFTIAELFKVEEKTTKAKFNG----- 232
A F G+ TD + L Y + + + + T++EL + K G
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 233 --RLPTGVKPLAYKIKI---LPFLIE----NNFTFLGEV--WIHVEVSQTTNNITLHMND 281
P+ Y + I P LI ++ ++ + E+ T H
Sbjct: 218 WLENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 282 LTILERSIKQVDNRSANWESDEGTSLTIGQVRNDTINQFMVFELEDEQFWATKRYVLYIK 341
L + +I + D +WES F +V K
Sbjct: 277 L-VTAVAIAETD----SWES------------------F---------------FVSVRK 298
Query: 342 YVGKLNDQMRGLYRSSYEVNNTKRWI-MASQFQATDARRAFPCFDEPSLKAKFAISIGR- 399
+ L+ +I + A+P P + ++
Sbjct: 299 A-------ITVLF-----------FIGVRCY-------EAYPNTSLPPSILEDSLENNEG 333
Query: 400 LPN-MTAISNMPLKD-------GNQSDPENSMLYDEQIS-TNYHKERIATIVAHELAHQW 450
+P+ M +ISN+ + N P + IS N K +V+
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE---ISLVNGAK---NLVVS------- 380
Query: 451 FGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKI-----KDIFVVDELQNVFFLDAL 505
G +L G + S +I K F N F L
Sbjct: 381 -GPPQSL---------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFS-----NRF----L 421
Query: 506 KSSHPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHFLTTEVLKLGLQKYIKKKAMGSS 565
+ P H S LL A + +++K +
Sbjct: 422 PVASPFH---------------------SHLLVPASDLINKDLVKNNVS----------- 449
Query: 566 TQAELWAFLTNAGHEMRTLPEKMDVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRT 625
+ +++ +P V + T G ++R
Sbjct: 450 -----F-----NAKDIQ-IP----V------------------------YDTFDGSDLRV 470
Query: 626 LPENMD---VETIMNT---WTLQTGFPVIRVARDYDAGSA------VVKQVRGY-YRVLY 672
L ++ V+ I+ W T F + D+ G A + G RV
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGVLTHRNKDGTGVRV-- 527
Query: 673 DEKNWYLIIATLRNSTT 689
I+A +
Sbjct: 528 -------IVAGTLDINP 537
Score = 51.6 bits (123), Expect = 1e-06
Identities = 65/363 (17%), Positives = 110/363 (30%), Gaps = 113/363 (31%)
Query: 19 YTRYSHN-----DPSSEGRILLNEV-----------PLAVDVYHWLFPTTSENPPPKYTR 62
Y Y S+E L+E+ +++ WL S P Y
Sbjct: 177 YQTYHVLVGDLIKFSAE---TLSELIRTTLDAEKVFTQGLNILEWL-ENPSNTPDKDYLL 232
Query: 63 YSHNDPSSEGRILLNEVPL---------AVDETTKMLNHKDPQQ--NHTSENNINLDPGL 111
P S PL V T K+L P + ++ G
Sbjct: 233 SI---PIS--------CPLIGVIQLAHYVV--TAKLLG-FTPGELRSYLK--------GA 270
Query: 112 DVEVKK---AKAV---KT-PDFVHINVKLLSVCLVVVLAILLI--NTSLFAYKYYQCKAT 162
+ A A+ + F K ++V + + NTSL
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 163 SDSSPT-----RNLIAELFKVEEKTTKAKFNGRLPTDVKPLAYRIKILPFLIEN---NFT 214
++ P+ NL E +V++ K N LP +++I L+ N N
Sbjct: 331 NEGVPSPMLSISNLTQE--QVQDYV--NKTNSHLPAG-----KQVEIS--LV-NGAKNLV 378
Query: 215 IA-----------ELFKVEEKT----TKAKFNGR--------LPTGVKP-----LA-YKI 245
++ L K + + ++ F+ R LP P L
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLLVPASD 437
Query: 246 KILPFLIENNFTFLGEVWIHVEVSQTTNNITLHMNDLTILERSIKQVDNRSANWESDEGT 305
I L++NN +F + + V T + L + +I ER + + WE+
Sbjct: 438 LINKDLVKNNVSFNAKDI-QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 306 SLT 308
T
Sbjct: 497 KAT 499
Score = 50.0 bits (119), Expect = 4e-06
Identities = 91/582 (15%), Positives = 159/582 (27%), Gaps = 256/582 (43%)
Query: 528 ISYSKGS---SLLRMAEHFLTTEVLKLGLQKYIKKKAMGS------STQAELWA-FLTNA 577
++ S GS LL F L+ K + + G +T AEL FL
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL--- 65
Query: 578 GH-----EMRTLPEKMDVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPENMDV 632
G+ E + + VL L L ++ +L G+++ L +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFEN-------------CYL--EGNDIHALAAKLLQ 110
Query: 633 ETIMNTWTLQTGFPVIRVARDYDA------------GSAVVKQVR-------------GY 667
E N TL +I+ A SA+ + V G
Sbjct: 111 E---NDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 668 YRVLYDEKNWYLIIATLRN-STTYNTIHLLNRAQLIDDAMNLARAGLLD----------- 715
++E LR+ TY+ L+ D + + L +
Sbjct: 166 TDDYFEE---------LRDLYQTYHV--------LVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 716 YKIALDVTAYLQYE---------------------TELVPWRSAMQALGYIEGQLYRR-- 752
+ L++ +L+ +L + + LG+ G+L
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 753 ----------------------AYFD---KYKKYLLHI------------IRP--MYESI 773
++F K L I + P + +S+
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 774 -GFDGSP------KD-DQMTVYKRVDVLN-----------------RACIL--------G 800
+G P + Q V V+ N + ++ G
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 801 LKDCVQK--ALSKYQNWISNPSKI---ER-----------TGPYVWDHFQETVFMSTYLV 844
L ++K A S + S+I ER P+ H S LV
Sbjct: 389 LNLTLRKAKAPSG-----LDQSRIPFSERKLKFSNRFLPVASPF---H-------SHLLV 433
Query: 845 AMAVTDFSHRVHNDD---HSGSFR--VWSREEYINQTAYSLDIGPRLLKYFEKYFDYHYP 899
A + + ++ ++ + V+ + + S I R+
Sbjct: 434 P-ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI------------- 479
Query: 900 LEKTDMIA-LP---------------DFGAGAMENFGLITFR 925
D I LP DFG G G++T R
Sbjct: 480 ---VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 36.5 bits (83), Expect = 0.049
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 19/160 (11%)
Query: 419 PENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWW-----------NDLWLNE 467
++ Q N + + ++ HE H W + + LW E
Sbjct: 248 SRKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYE 307
Query: 468 GFASYIEYF-----GVDSVEHTWKIK--DIFVVDELQNVFFLDALKSSHPVHVEVSHPDE 520
G SY + + G+ + K+ + V+ + +SS + +E
Sbjct: 308 GMTSYFDDYLLHTSGIIDEKRYLKLLGDTLSRVERGAGQYQQSVTESSFLAWTKFYQQNE 367
Query: 521 ITEIFDKISYSKGSSLLRMAEHFLTTEVL-KLGLQKYIKK 559
Y+KG+ + + L + KL L + +K+
Sbjct: 368 NAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARVMKE 407
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 34.7 bits (79), Expect = 0.087
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 19/99 (19%)
Query: 710 RAGLL---DYKIALDVTAYLQYETE-LVPWRSAMQALGYIEGQLYRRAYFDKYKKYLLHI 765
G+ +Y + + + + P + L E K KK+L+
Sbjct: 115 SVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGL---ELS----DTKQKGKKFLVIA 167
Query: 766 IRPMYESIGF-------DGSPKDDQMTVYKRVDVLNRAC 797
P +E+I S +D VD LN+ C
Sbjct: 168 YEP-FENIAIELPPNEILFSENNDMDNNNDGVDELNKKC 205
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 105
Score = 31.9 bits (72), Expect = 0.21
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 790 VDVLNRACILGLKDCVQKALSKYQNWISNPSKIERTGPYVWDHF 833
V V+ A +L LK +Q+ + Q I + YVW +
Sbjct: 22 VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHI--SWSYVWRTY 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.65
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 286 ERSIKQVDNRSANWESDEGTSLTIGQVRNDTI 317
++++K++ + D +L I T+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI----KATM 46
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 30.7 bits (70), Expect = 1.7
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 18/116 (15%)
Query: 433 YHKERIATIVAHELAHQWFGNLVTLAWWNDLWLNEGFASYIEYFGVDSVEHTWKIKDIFV 492
YH E + A L+ W +++ A E S K +
Sbjct: 72 YHPEGLDQHWADYLSEHWQRDILQAI-----------ADGFEALKPQSPLEQNPWKISYH 120
Query: 493 VDELQNVFFLDALKSS-----HPVHVEVSHPDEITEIFDKISYSKGSSLLRMAEHF 543
+D +D L PV V S ++ ++ + +KG++ + +H
Sbjct: 121 LDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDV-DLLPQ-RSNKGNATQYLQQHL 174
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics,
joint center for structural genomics; HET: MSE; 1.44A
{Caulobacter crescentus CB15}
Length = 312
Score = 31.0 bits (71), Expect = 1.9
Identities = 17/111 (15%), Positives = 26/111 (23%), Gaps = 39/111 (35%)
Query: 826 GPYVW----DHFQETVFMSTYLVAMAVTDFSHRVHNDDHSGSFRVWSREEYINQTAYSLD 881
VW F+ +S ++ +V A L
Sbjct: 116 ADNVWPAEIPAFKHD--VSWLYNSL--DGMGGKV--------LEAI---------ATYLK 154
Query: 882 IGPRLLKYFEKYFDY--------HYPLEKTDMIALPDFGAGAMENFGLITF 924
+ +F+ HYP D AGA + IT
Sbjct: 155 LER---DFFKPTVQDGNSVLRLLHYPPIPKDA---TGVRAGAHGDINTITL 199
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A
{Staphylococcus aureus} SCOP: d.92.1.2
Length = 301
Score = 30.8 bits (69), Expect = 2.1
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 418 DPENSMLYDEQISTNYHKERIATIVAHELAHQWFGNLVTLAWWNDLW-LNEGFASYIEYF 476
+ + D T + +VAHE+ H L + + LNE F+ + F
Sbjct: 118 IGDKMIYGDGDGRTFTNLSGANDVVAHEITHGVTQQTANLEYKDQSGALNESFS---DVF 174
Query: 477 GVDSVEHTWKI-KDIFVVDE 495
G + + + +D++ +
Sbjct: 175 GYFVDDEDFLMGEDVYTPGK 194
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A
{Deinococcus radiodurans} SCOP: b.40.4.3
Length = 301
Score = 29.4 bits (66), Expect = 6.3
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 744 YIEGQLYRRAYFDK--YKKYLLHIIRPMYESIGFDGSPKDDQMTVYKRVDVLNRACILG 800
+EG L R + K+ +++ E +G D + +N +LG
Sbjct: 78 VVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGVRMSGAMNEVLVLG 136
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 28.2 bits (63), Expect = 8.8
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 19 YTRYSHNDPSSEGRILLNEVPLAVDVYHW--LFPTTSENPPPKYTRYSHNDPSS 70
Y R H +ILL E+ L+ V W LFP +S P SS
Sbjct: 106 YGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLAPLTRRASQSS 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,718,233
Number of extensions: 904885
Number of successful extensions: 1714
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1619
Number of HSP's successfully gapped: 62
Length of query: 947
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 844
Effective length of database: 3,825,930
Effective search space: 3229084920
Effective search space used: 3229084920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.4 bits)