BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14631
         (308 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
           For A D-Hexose-6-Phosphate Mutarotase. Complex With
           Glucose-6-Phosphate
 pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
           For A D-Hexose-6-Phosphate Mutarotase. Complex With
           Tagatose-6-Phosphate
          Length = 297

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 21/143 (14%)

Query: 104 EPHEGKRKVEALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYDLFYR 163
           +P     ++  LWP+  +     E G      Y  T + + N   S   K  +++  ++R
Sbjct: 108 KPEIANPELTKLWPMDYLLILTVELG----SDYLKTAIEVENTSSSKELKFNWLFHTYFR 163

Query: 164 RKAISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQGY 223
            + I     +  +  N+A           G +LYD  L E+  DK+ +  + ++  V  Y
Sbjct: 164 IEDI-----EGTMVSNLA-----------GMKLYDQLLKESYVDKHPVVTFNQETDVI-Y 206

Query: 224 ENLCCLRCIQTRDTNFGTSCICR 246
           +N+   R IQ  D       + R
Sbjct: 207 QNVSAERAIQIVDKGVQIHTLKR 229


>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
           For A D-Hexose-6-Phosphate Mutarotase
          Length = 297

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 21/143 (14%)

Query: 104 EPHEGKRKVEALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYDLFYR 163
           +P     ++  LWP+  +     E G      Y  T + + N   S   K  +++  ++R
Sbjct: 108 KPEIANPELTKLWPMDYLLILTVELG----SDYLKTAIEVENTSSSKELKFNWLFHTYFR 163

Query: 164 RKAISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQGY 223
            + I     +  +  N+A           G +LYD  L E+  DK+ +  + ++  V  Y
Sbjct: 164 IEDI-----EGTMVSNLA-----------GMKLYDQLLKESYVDKHPVVTFNQETDVI-Y 206

Query: 224 ENLCCLRCIQTRDTNFGTSCICR 246
           +N+   R IQ  D       + R
Sbjct: 207 QNVSAERAIQIVDKGVQIHTLKR 229


>pdb|1UAD|C Chain C, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
           Domain Complex
 pdb|1UAD|D Chain D, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
           Domain Complex
          Length = 99

 Score = 27.7 bits (60), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 226 LCCLRCIQTRDTNFGTSCICRVPKVKLEEGRIVECIHCGCRGCS 269
           +C   C+ T +    +  +CRV + K ++G I+     G RG S
Sbjct: 43  ICGHNCLLTAEWMSASKIVCRVGQAKNDKGDIIVTTKSGGRGTS 86


>pdb|3LTF|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
           Factor Receptor Ectodomain In Complex With Spitz
 pdb|3LTF|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
           Factor Receptor Ectodomain In Complex With Spitz
 pdb|3LTG|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
           Factor Receptor Ectodomain Complexed With A Low Affinity
           Spitz Mutant
 pdb|3LTG|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
           Factor Receptor Ectodomain Complexed With A Low Affinity
           Spitz Mutant
          Length = 601

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 228 CLRCIQTRDTNFGTSCICRVPKVKLEEGRIVECIHCGCRGCSG 270
           C  C+  RD   G  C+   PK K  +  +    H  C GC+G
Sbjct: 545 CQECVHVRD---GQHCVSECPKNKYNDRGVCRECHATCDGCTG 584


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,454,892
Number of Sequences: 62578
Number of extensions: 386988
Number of successful extensions: 1085
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 23
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)