Query psy14631
Match_columns 308
No_of_seqs 175 out of 263
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 16:40:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3404|consensus 100.0 5.4E-76 1.2E-80 497.2 8.7 145 1-271 1-145 (145)
2 PF01125 G10: G10 protein; In 100.0 5.4E-71 1.2E-75 468.0 9.2 144 1-270 1-145 (145)
3 COG5132 BUD31 Cell cycle contr 100.0 5.2E-59 1.1E-63 393.3 5.7 145 1-272 1-146 (146)
4 PF01125 G10: G10 protein; In 99.2 6.8E-12 1.5E-16 107.7 3.4 43 154-196 58-100 (145)
5 KOG3404|consensus 99.1 3.4E-11 7.5E-16 103.4 3.7 42 154-195 57-98 (145)
6 COG5132 BUD31 Cell cycle contr 98.4 1.2E-07 2.7E-12 81.6 3.2 56 114-197 45-100 (146)
7 PF03604 DNA_RNApol_7kD: DNA d 33.2 19 0.0004 24.5 0.6 15 252-266 12-26 (32)
8 KOG0143|consensus 29.3 64 0.0014 30.6 3.6 43 7-54 122-164 (322)
9 KOG2752|consensus 27.3 38 0.00081 33.8 1.7 43 237-280 124-174 (345)
10 PRK14456 ribosomal RNA large s 24.5 3.9E+02 0.0084 26.2 8.0 44 135-189 20-63 (368)
11 PF02066 Metallothio_11: Metal 22.8 44 0.00096 25.7 1.0 33 237-269 22-54 (55)
12 PRK00420 hypothetical protein; 22.6 42 0.00091 28.4 1.0 25 240-265 23-48 (112)
13 PF06677 Auto_anti-p27: Sjogre 22.6 38 0.00083 24.1 0.6 24 240-264 17-41 (41)
14 PRK05270 galactose-1-phosphate 20.7 1.4E+02 0.003 31.2 4.4 56 133-188 67-131 (493)
15 TIGR01239 galT_2 galactose-1-p 20.3 1.4E+02 0.0031 31.1 4.3 91 133-233 64-176 (489)
16 PF13719 zinc_ribbon_5: zinc-r 20.3 45 0.00098 22.5 0.6 20 246-265 13-33 (37)
17 KOG0677|consensus 20.2 69 0.0015 32.0 2.0 94 52-181 88-200 (389)
No 1
>KOG3404|consensus
Probab=100.00 E-value=5.4e-76 Score=497.16 Aligned_cols=145 Identities=77% Similarity=1.398 Sum_probs=142.2
Q ss_pred CCCCCCCCCCCCCchhchHHHHHHHHHHHhccCCCcccchhHHHHHHHhhhcchhhhhhhhhhccchhhHHHHhhhcccC
Q psy14631 1 MPKVRRTRKHLPDGWELIEPTLEELEQKMREGRTIPFKENLTELLSEQLFVDMKFFEITEISYKNHFTKILLFCSQLKLN 80 (308)
Q Consensus 1 mpkvr~~~k~~p~g~e~ie~tl~e~~~kmre~~~~~~~~~~~~~~~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (308)
|||||++||+||||||+|||||++||++||+
T Consensus 1 mpkv~~~rk~~Pdg~e~IeptL~e~e~kmRe------------------------------------------------- 31 (145)
T KOG3404|consen 1 MPKVKRSRKPPPDGWELIEPTLEEFEAKMRE------------------------------------------------- 31 (145)
T ss_pred CCccCcCCCCCCcchhhhhhhHHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999999999999
Q ss_pred hhhHHHhhhhccccccceeccccCCCCCCcCcccccceeeeeccccccCCCCCCccchhHHHHHHHhhhhhcccchhhHh
Q psy14631 81 PMKARERWKQNHFNSVFLFTAETEPHEGKRKVEALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYDL 160 (308)
Q Consensus 81 ~~~~~~~~k~~~~~~~~~~~ae~e~~~gkrk~e~lwpif~i~hq~~~~~~~~~~kIepTL~e~~~kmreaenrSEyLWpI 160 (308)
||++||+|+|++|.|||||+||||
T Consensus 32 --------------------ae~~~~~~~~~~E~lwpIfqlhHQ------------------------------------ 55 (145)
T KOG3404|consen 32 --------------------AETEPHEGKRKTESLWPIFQLHHQ------------------------------------ 55 (145)
T ss_pred --------------------hhcCcccCCCcchhhhhHHHHhhh------------------------------------
Confidence 899999999999999999999998
Q ss_pred hhhhhhhhHHHHHHHHhcccccHHHHHHhhhhchhhhhHHHhhhhhhHHHHHHHhhcCcccchhhccccccccccCCCCC
Q psy14631 161 FYRRKAISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQGYENLCCLRCIQTRDTNFG 240 (308)
Q Consensus 161 y~IhHQISRYIYDlyy~e~~ydrKLISKwkk~s~ELYewcLkekyAD~nLIAKWkk~gy~~gye~LCClrCIqtrdtnfg 240 (308)
+||||||+| |+|++||+ |||+|||+++|||++|||||+|+ |||+||||||||++|+|||
T Consensus 56 ------rsRYiYdly-----ykR~~IS~------eLY~~~l~~~yaD~~LiakWkk~----GYE~LCClRCIq~~dsn~G 114 (145)
T KOG3404|consen 56 ------RSRYIYDLY-----YKRKAISR------ELYDYCLKEKYADKNLIAKWKKQ----GYENLCCLRCIQTRDSNFG 114 (145)
T ss_pred ------hhhhHHHHH-----HHHHHHHH------HHHHHHHHcccchHHHHHHHhhc----CccceeeeeeccccccCCC
Confidence 999999999 59999999 99999999999999999999999 9999999999999999999
Q ss_pred cceEeecccCcccCCceeecccccCccCcCC
Q psy14631 241 TSCICRVPKVKLEEGRIVECIHCGCRGCSGG 271 (308)
Q Consensus 241 ttCICRVPk~~l~~~~~veCv~CGCrGc~~g 271 (308)
|+||||||+++|+++++++|+||||+||||+
T Consensus 115 t~CICRVPk~~ld~~~~~~C~hCGCrGCs~~ 145 (145)
T KOG3404|consen 115 TTCICRVPKSKLDVERIVECVHCGCRGCSGY 145 (145)
T ss_pred ceEEEeCChhhcChhheeeeeccCcCCCCCC
Confidence 9999999999999999999999999999985
No 2
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=100.00 E-value=5.4e-71 Score=468.04 Aligned_cols=144 Identities=72% Similarity=1.293 Sum_probs=139.9
Q ss_pred CCCCCCC-CCCCCCchhchHHHHHHHHHHHhccCCCcccchhHHHHHHHhhhcchhhhhhhhhhccchhhHHHHhhhccc
Q psy14631 1 MPKVRRT-RKHLPDGWELIEPTLEELEQKMREGRTIPFKENLTELLSEQLFVDMKFFEITEISYKNHFTKILLFCSQLKL 79 (308)
Q Consensus 1 mpkvr~~-~k~~p~g~e~ie~tl~e~~~kmre~~~~~~~~~~~~~~~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (308)
|||||+. +++||+|||+|||||+||++|||+
T Consensus 1 MPkir~~~~k~pP~G~~~Ie~tL~e~~~kmr~------------------------------------------------ 32 (145)
T PF01125_consen 1 MPKIRTSRKKPPPEGFEKIEPTLEEFEQKMRE------------------------------------------------ 32 (145)
T ss_pred CCCcccCCCCCCCCchHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 9999964 499999999999999999999999
Q ss_pred ChhhHHHhhhhccccccceeccccCCCCCCcCcccccceeeeeccccccCCCCCCccchhHHHHHHHhhhhhcccchhhH
Q psy14631 80 NPMKARERWKQNHFNSVFLFTAETEPHEGKRKVEALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYD 159 (308)
Q Consensus 80 ~~~~~~~~~k~~~~~~~~~~~ae~e~~~gkrk~e~lwpif~i~hq~~~~~~~~~~kIepTL~e~~~kmreaenrSEyLWp 159 (308)
||+++|+|||++|+||||||||||
T Consensus 33 ---------------------ae~~~~~~k~k~e~lWpI~rI~hq----------------------------------- 56 (145)
T PF01125_consen 33 ---------------------AENEPHEGKRKNESLWPIFRIHHQ----------------------------------- 56 (145)
T ss_pred ---------------------HhhCCCcCCCCCccccceeeecch-----------------------------------
Confidence 899999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHhcccccHHHHHHhhhhchhhhhHHHhhhhhhHHHHHHHhhcCcccchhhccccccccccCCCC
Q psy14631 160 LFYRRKAISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQGYENLCCLRCIQTRDTNF 239 (308)
Q Consensus 160 Iy~IhHQISRYIYDlyy~e~~ydrKLISKwkk~s~ELYewcLkekyAD~nLIAKWkk~gy~~gye~LCClrCIqtrdtnf 239 (308)
+||||||+| |++++||| |||+|||+++|||++|||||+|+ |||+|||++|||++|+||
T Consensus 57 -------rSRYIydly-----Yk~k~ISk------eLY~~ll~~~yaD~~LIaKWKk~----GYE~LCCl~Ciq~~~~n~ 114 (145)
T PF01125_consen 57 -------RSRYIYDLY-----YKRKAISK------ELYDWLLKEKYADANLIAKWKKP----GYEKLCCLRCIQTRDTNF 114 (145)
T ss_pred -------hhhHHHHHH-----HHhhhccH------HHHHHHHHcCCcCHHHHHHhccc----cHHHHHHHHHhccccccC
Confidence 999999999 58999998 99999999999999999999999 999999999999999999
Q ss_pred CcceEeecccCcccCCceeecccccCccCcC
Q psy14631 240 GTSCICRVPKVKLEEGRIVECIHCGCRGCSG 270 (308)
Q Consensus 240 gttCICRVPk~~l~~~~~veCv~CGCrGc~~ 270 (308)
|+|||||||+++++++.+++|+||||+||||
T Consensus 115 g~tCICRVP~~~l~~~~~~~c~~CGC~GCaS 145 (145)
T PF01125_consen 115 GTTCICRVPKAKLEEKQFVECVHCGCRGCAS 145 (145)
T ss_pred CCceEEeCcHHHhccCcccccCCCCCCCCCC
Confidence 9999999999999999999999999999997
No 3
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=100.00 E-value=5.2e-59 Score=393.33 Aligned_cols=145 Identities=43% Similarity=0.874 Sum_probs=130.8
Q ss_pred CCCCCCCC-CCCCCchhchHHHHHHHHHHHhccCCCcccchhHHHHHHHhhhcchhhhhhhhhhccchhhHHHHhhhccc
Q psy14631 1 MPKVRRTR-KHLPDGWELIEPTLEELEQKMREGRTIPFKENLTELLSEQLFVDMKFFEITEISYKNHFTKILLFCSQLKL 79 (308)
Q Consensus 1 mpkvr~~~-k~~p~g~e~ie~tl~e~~~kmre~~~~~~~~~~~~~~~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (308)
||+|+++| |++|||||.|+|||+++|.+||+
T Consensus 1 MPRi~t~rskp~PdgFeki~ptL~~fe~~mRq------------------------------------------------ 32 (146)
T COG5132 1 MPRIPTNRSKPAPDGFEKIRPTLEKFEAEMRQ------------------------------------------------ 32 (146)
T ss_pred CCcCccCCCCCCCcchhhhcchHHHHHHHHHH------------------------------------------------
Confidence 99999888 67799999999999999999999
Q ss_pred ChhhHHHhhhhccccccceeccccCCCCCCcCcccccceeeeeccccccCCCCCCccchhHHHHHHHhhhhhcccchhhH
Q psy14631 80 NPMKARERWKQNHFNSVFLFTAETEPHEGKRKVEALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYD 159 (308)
Q Consensus 80 ~~~~~~~~~k~~~~~~~~~~~ae~e~~~gkrk~e~lwpif~i~hq~~~~~~~~~~kIepTL~e~~~kmreaenrSEyLWp 159 (308)
||+.|..+. ++|.+||
T Consensus 33 ---------------------aen~~~~~s-------------------------------------------k~E~lwp 48 (146)
T COG5132 33 ---------------------AENAPLAPS-------------------------------------------KPENLWP 48 (146)
T ss_pred ---------------------HhcCCCCCC-------------------------------------------ChHHhhH
Confidence 677766432 3345555
Q ss_pred hhhhhhhhhHHHHHHHHhcccccHHHHHHhhhhchhhhhHHHhhhhhhHHHHHHHhhcCcccchhhccccccccccCCCC
Q psy14631 160 LFYRRKAISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQGYENLCCLRCIQTRDTNF 239 (308)
Q Consensus 160 Iy~IhHQISRYIYDlyy~e~~ydrKLISKwkk~s~ELYewcLkekyAD~nLIAKWkk~gy~~gye~LCClrCIqtrdtnf 239 (308)
|||+|||+|||||++| |+|++||+ +||+||++++|||.+|||||+|+ |||+||||||||+.+++|
T Consensus 49 IfQLHHQRSRYIY~Ly-----yKR~aISt------~LY~wL~k~~yaD~~LiakW~k~----GYEkLCCLRCIQ~~esk~ 113 (146)
T COG5132 49 IFQLHHQRSRYIYNLY-----YKRGAIST------KLYGWLSKNRYADHELIAKWDKV----GYEKLCCLRCIQPIESKH 113 (146)
T ss_pred HHHHHHhhhHHHHHHH-----hhhhhHHH------HHHHHHHHhcccchhHhhhhccc----chhhhhhHhhcCcccccC
Confidence 5555556999999999 59999999 99999999999999999999999 999999999999999999
Q ss_pred CcceEeecccCcccCCceeecccccCccCcCCC
Q psy14631 240 GTSCICRVPKVKLEEGRIVECIHCGCRGCSGGL 272 (308)
Q Consensus 240 gttCICRVPk~~l~~~~~veCv~CGCrGc~~g~ 272 (308)
|++||||||+++|++...+.|+||||+||||.|
T Consensus 114 GstCICRVP~~~ld~~qr~kC~hCGCrGCas~d 146 (146)
T COG5132 114 GSTCICRVPQRNLDVSQRLKCDHCGCRGCASYD 146 (146)
T ss_pred CCEEEEeCchhhcCHHHhccccccCCCcccCCC
Confidence 999999999999999999999999999999965
No 4
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=99.21 E-value=6.8e-12 Score=107.70 Aligned_cols=43 Identities=74% Similarity=1.242 Sum_probs=40.7
Q ss_pred cchhhHhhhhhhhhhHHHHHHHHhcccccHHHHHHhhhhchhh
Q psy14631 154 SRYIYDLFYRRKAISRELYDYCLAENIADKNLIAKWKKQGYEL 196 (308)
Q Consensus 154 SEyLWpIy~IhHQISRYIYDlyy~e~~ydrKLISKwkk~s~EL 196 (308)
|||||++||++++|||+||||++++||+|++||+||||+|||-
T Consensus 58 SRYIydlyYk~k~ISkeLY~~ll~~~yaD~~LIaKWKk~GYE~ 100 (145)
T PF01125_consen 58 SRYIYDLYYKRKAISKELYDWLLKEKYADANLIAKWKKPGYEK 100 (145)
T ss_pred hhHHHHHHHHhhhccHHHHHHHHHcCCcCHHHHHHhccccHHH
Confidence 0699999999999999999999999999999999999999994
No 5
>KOG3404|consensus
Probab=99.13 E-value=3.4e-11 Score=103.36 Aligned_cols=42 Identities=88% Similarity=1.487 Sum_probs=40.0
Q ss_pred cchhhHhhhhhhhhhHHHHHHHHhcccccHHHHHHhhhhchh
Q psy14631 154 SRYIYDLFYRRKAISRELYDYCLAENIADKNLIAKWKKQGYE 195 (308)
Q Consensus 154 SEyLWpIy~IhHQISRYIYDlyy~e~~ydrKLISKwkk~s~E 195 (308)
|||+|++||++.+|||+||||+++++|+|++||+||||+|||
T Consensus 57 sRYiYdlyykR~~IS~eLY~~~l~~~yaD~~LiakWkk~GYE 98 (145)
T KOG3404|consen 57 SRYIYDLYYKRKAISRELYDYCLKEKYADKNLIAKWKKQGYE 98 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHhhcCcc
Confidence 049999999999999999999999999999999999999998
No 6
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=98.44 E-value=1.2e-07 Score=81.56 Aligned_cols=56 Identities=57% Similarity=1.110 Sum_probs=54.1
Q ss_pred cccceeeeeccccccCCCCCCccchhHHHHHHHhhhhhcccchhhHhhhhhhhhhHHHHHHHHhcccccHHHHHHhhhhc
Q psy14631 114 ALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYDLFYRRKAISRELYDYCLAENIADKNLIAKWKKQG 193 (308)
Q Consensus 114 ~lwpif~i~hq~~~~~~~~~~kIepTL~e~~~kmreaenrSEyLWpIy~IhHQISRYIYDlyy~e~~ydrKLISKwkk~s 193 (308)
.|||||++||| +|||+|++||++.+||..||+|..+++|+|.+||++|+|.|
T Consensus 45 ~lwpIfQLHHQ----------------------------RSRYIY~LyyKR~aISt~LY~wL~k~~yaD~~LiakW~k~G 96 (146)
T COG5132 45 NLWPIFQLHHQ----------------------------RSRYIYNLYYKRGAISTKLYGWLSKNRYADHELIAKWDKVG 96 (146)
T ss_pred HhhHHHHHHHh----------------------------hhHHHHHHHhhhhhHHHHHHHHHHHhcccchhHhhhhcccc
Confidence 79999999999 99999999999999999999999999999999999999999
Q ss_pred hhhh
Q psy14631 194 YELY 197 (308)
Q Consensus 194 ~ELY 197 (308)
||-.
T Consensus 97 YEkL 100 (146)
T COG5132 97 YEKL 100 (146)
T ss_pred hhhh
Confidence 9843
No 7
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=33.24 E-value=19 Score=24.47 Aligned_cols=15 Identities=40% Similarity=0.948 Sum_probs=11.7
Q ss_pred ccCCceeecccccCc
Q psy14631 252 LEEGRIVECIHCGCR 266 (308)
Q Consensus 252 l~~~~~veCv~CGCr 266 (308)
++.+..+.|.+||+|
T Consensus 12 ~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 12 LKPGDPIRCPECGHR 26 (32)
T ss_dssp BSTSSTSSBSSSS-S
T ss_pred cCCCCcEECCcCCCe
Confidence 666778999999987
No 8
>KOG0143|consensus
Probab=29.30 E-value=64 Score=30.62 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=37.7
Q ss_pred CCCCCCCchhchHHHHHHHHHHHhccCCCcccchhHHHHHHHhhhcch
Q psy14631 7 TRKHLPDGWELIEPTLEELEQKMREGRTIPFKENLTELLSEQLFVDMK 54 (308)
Q Consensus 7 ~~k~~p~g~e~ie~tl~e~~~kmre~~~~~~~~~~~~~~~e~~~~d~~ 54 (308)
..+..|++...+.++++|+-++|++ ..+.|.++|+|.|-++..
T Consensus 122 ~~~~wp~~p~~~re~~~eY~~~~~~-----L~~~l~~~l~eslgl~~~ 164 (322)
T KOG0143|consen 122 DPNLWPEGPPEFRETMEEYAKEVME-----LSEKLLRLLSESLGLEPE 164 (322)
T ss_pred CcccCccccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCChH
Confidence 4567899999999999999999998 688999999999988863
No 9
>KOG2752|consensus
Probab=27.30 E-value=38 Score=33.79 Aligned_cols=43 Identities=37% Similarity=0.875 Sum_probs=31.3
Q ss_pred CCC-CcceEeecccCc---ccCCceeeccccc----CccCcCCCCCcccccc
Q psy14631 237 TNF-GTSCICRVPKVK---LEEGRIVECIHCG----CRGCSGGLNQALTIVP 280 (308)
Q Consensus 237 tnf-gttCICRVPk~~---l~~~~~veCv~CG----CrGc~~g~~~~~~~~~ 280 (308)
+|| |.-|+|-+|-.+ .++|...+|+-|- |-||.-- ...++-+|
T Consensus 124 hNfqG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~-~~~~~~yp 174 (345)
T KOG2752|consen 124 HNFQGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQA-KTFLEDYP 174 (345)
T ss_pred hhhcceeEEecCCCCCccccccceeeeEEeccchhcccccCcc-cchhhccc
Confidence 455 889999888776 4556789999999 9999643 33444445
No 10
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.52 E-value=3.9e+02 Score=26.16 Aligned_cols=44 Identities=2% Similarity=-0.066 Sum_probs=29.6
Q ss_pred ccchhHHHHHHHhhhhhcccchhhHhhhhhhhhhHHHHHHHHhcccccHHHHHHh
Q psy14631 135 KYGSTLLVICNFIVSAHQKSRYIYDLFYRRKAISRELYDYCLAENIADKNLIAKW 189 (308)
Q Consensus 135 kIepTL~e~~~kmreaenrSEyLWpIy~IhHQISRYIYDlyy~e~~ydrKLISKw 189 (308)
..+-++.++.+.+.+.- + ..-|.+.||+|.|+.+.-+-..++..
T Consensus 20 ~~~~~~~el~~~~~~~g------~-----~~~r~~qi~~w~y~~~~~~~~~m~~l 63 (368)
T PRK14456 20 IRNLRRQELTELLARLG------E-----PAWRAAQLHQWLFSHRALSFEEMTTL 63 (368)
T ss_pred cccCCHHHHHHHHHHcC------C-----CchHHHHHHHHHHHcCCCCHHHhccc
Confidence 35667788877776532 1 23377889999988877666666553
No 11
>PF02066 Metallothio_11: Metallothionein family 11; InterPro: IPR000869 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium, nickel, etc. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects, e.g. low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Fungi-IV (family 11) MTs are proteins of about 55-56 residues, with 9 conserved cysteines. Its members are recognised by the sequence pattern C-X-K-C-x-C-x(2)-C-K-C. The taxonomic range of the members extends to ascomycotina. The protein contains a number of unusual histidine and phenylalanine residues conserved in the N-terminal part of the sequence. This fragment does not contain any Cys. The protein binds to copper ions.; GO: 0005507 copper ion binding
Probab=22.77 E-value=44 Score=25.69 Aligned_cols=33 Identities=27% Similarity=0.801 Sum_probs=20.3
Q ss_pred CCCCcceEeecccCcccCCceeecccccCccCc
Q psy14631 237 TNFGTSCICRVPKVKLEEGRIVECIHCGCRGCS 269 (308)
Q Consensus 237 tnfgttCICRVPk~~l~~~~~veCv~CGCrGc~ 269 (308)
+|.-.+|-|--|.++-.--..-.|..|||..|-
T Consensus 22 h~LVNnCCCSs~~~~~~mp~sCaC~KC~CktCK 54 (55)
T PF02066_consen 22 HNLVNNCCCSSPTSESNMPASCACTKCGCKTCK 54 (55)
T ss_pred hhhhhhhccCCCccCCCCCCceeeccccccccc
Confidence 344456666666544333334578899999883
No 12
>PRK00420 hypothetical protein; Validated
Probab=22.62 E-value=42 Score=28.37 Aligned_cols=25 Identities=32% Similarity=0.756 Sum_probs=17.6
Q ss_pred Ccce-EeecccCcccCCceeecccccC
Q psy14631 240 GTSC-ICRVPKVKLEEGRIVECIHCGC 265 (308)
Q Consensus 240 gttC-ICRVPk~~l~~~~~veCv~CGC 265 (308)
+.+| .|..|--.+..| .+.|+.||=
T Consensus 23 ~~~CP~Cg~pLf~lk~g-~~~Cp~Cg~ 48 (112)
T PRK00420 23 SKHCPVCGLPLFELKDG-EVVCPVHGK 48 (112)
T ss_pred cCCCCCCCCcceecCCC-ceECCCCCC
Confidence 3566 788888777555 578888864
No 13
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=22.62 E-value=38 Score=24.06 Aligned_cols=24 Identities=29% Similarity=0.904 Sum_probs=16.9
Q ss_pred Ccce-EeecccCcccCCceeeccccc
Q psy14631 240 GTSC-ICRVPKVKLEEGRIVECIHCG 264 (308)
Q Consensus 240 gttC-ICRVPk~~l~~~~~veCv~CG 264 (308)
+.+| .|.+|--....| .+-|+.|+
T Consensus 17 ~~~Cp~C~~PL~~~k~g-~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMRDKDG-KIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEEecCC-CEECCCCC
Confidence 4556 678888775555 47899885
No 14
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=20.74 E-value=1.4e+02 Score=31.16 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=39.8
Q ss_pred CCccchhHHH---HHHHhhhhhcc-----cchhhHhhhhhh-hhhHHHHHHHHhcccccHHHHHH
Q psy14631 133 KGKYGSTLLV---ICNFIVSAHQK-----SRYIYDLFYRRK-AISRELYDYCLAENIADKNLIAK 188 (308)
Q Consensus 133 ~~kIepTL~e---~~~kmreaenr-----SEyLWpIy~IhH-QISRYIYDlyy~e~~ydrKLISK 188 (308)
.|.|++|+.. |..++-+.-.. ++.+|.+|+..- +-.-|.|+++-+.||.+++.|+|
T Consensus 67 ~g~i~d~~~~rd~~~~~lM~~ltP~PS~v~~~F~~~y~~~p~~ATdyFY~ls~~~nYIr~~~Iak 131 (493)
T PRK05270 67 NGLIEDTQTERDILDAQLMDLLTPRPSEVNRRFWEKYQKSPEAATDYFYQLSKANNYIKTDAIAK 131 (493)
T ss_pred cCCCCCchhhHHHHHhHHhccCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCcHhHHHHHh
Confidence 5667666654 44444333321 488999998754 34578999999999999999998
No 15
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=20.31 E-value=1.4e+02 Score=31.08 Aligned_cols=91 Identities=16% Similarity=0.331 Sum_probs=57.5
Q ss_pred CCccchhH---HHHHHHhhhhhcc-----cchhhHhhhhhh-hhhHHHHHHHHhcccccHHHHHHhhhhchhhhhHHHhh
Q psy14631 133 KGKYGSTL---LVICNFIVSAHQK-----SRYIYDLFYRRK-AISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAE 203 (308)
Q Consensus 133 ~~kIepTL---~e~~~kmreaenr-----SEyLWpIy~IhH-QISRYIYDlyy~e~~ydrKLISKwkk~s~ELYewcLke 203 (308)
.|.|+++. +-|..++-+.-.. ++.+|.+|+..- +-..|.|++.-+.||.+.+.|+| .+. |-..-
T Consensus 64 ~g~i~d~~~~rd~~~~~lM~~ltP~PS~v~~~F~~~y~~~p~~ATdyFY~ls~~~nYIr~~~Iak------Ni~-~~~~t 136 (489)
T TIGR01239 64 NGRMEADTTQRDILEAKLMDLITPRPSEVNRKFWETYASYPEQATKYFYQYSKRVYYVKTDAIAK------NIH-YTVPT 136 (489)
T ss_pred cCCCCCcchhHHHHHhHHhccCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCcchHHHHhh------Ccc-cccCC
Confidence 46666655 2344444443321 488999996554 46789999999999999999998 221 32222
Q ss_pred hhh-------------hHHHHHHHhhcCcccchhhcccccccc
Q psy14631 204 NIA-------------DKNLIAKWKKQGYVQGYENLCCLRCIQ 233 (308)
Q Consensus 204 kyA-------------D~nLIAKWkk~gy~~gye~LCClrCIq 233 (308)
.|. |+.=||+=+... ..+|. =|+-|+.
T Consensus 137 ~YG~leITINLSKPEKDPK~IAaAk~~~-~s~YP--kC~LC~E 176 (489)
T TIGR01239 137 EYGDLEITINLSKPEKDPKAIAAAKEAK-QSSYP--ACQLCME 176 (489)
T ss_pred CccceEEEEecCCCCCCHHHHHHHhhCc-cCCCC--ccchhcc
Confidence 332 556677665443 23666 5888885
No 16
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.28 E-value=45 Score=22.54 Aligned_cols=20 Identities=55% Similarity=0.974 Sum_probs=15.1
Q ss_pred ecccCccc-CCceeecccccC
Q psy14631 246 RVPKVKLE-EGRIVECIHCGC 265 (308)
Q Consensus 246 RVPk~~l~-~~~~veCv~CGC 265 (308)
+||.+++. .|+.+.|.+|+-
T Consensus 13 ~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 13 RVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EcCHHHcccCCcEEECCCCCc
Confidence 57777754 478899999974
No 17
>KOG0677|consensus
Probab=20.16 E-value=69 Score=31.98 Aligned_cols=94 Identities=27% Similarity=0.376 Sum_probs=59.2
Q ss_pred cchhhhhhhhhhccchhhHHHHhhhcccChhhHHHhh-----hhccccccceec--------------cccCCCCCCcCc
Q psy14631 52 DMKFFEITEISYKNHFTKILLFCSQLKLNPMKARERW-----KQNHFNSVFLFT--------------AETEPHEGKRKV 112 (308)
Q Consensus 52 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----k~~~~~~~~~~~--------------ae~e~~~gkrk~ 112 (308)
|-.|+|--.|.-+|- |||| ..-|+||.|+||.- .+-.|++|+... .--++.+|-.-.
T Consensus 88 DytF~ekl~idp~~~--KiLL--TePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi 163 (389)
T KOG0677|consen 88 DYTFGEKLKIDPTNC--KILL--TEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHI 163 (389)
T ss_pred HhhhhhhccCCCccC--eEEe--eCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEE
Confidence 555665555555554 7776 46789999999974 456788888651 122455665555
Q ss_pred ccccceeeeeccccccCCCCCCccchhHHHHHHHhhhhhcccchhhHhhhhhhhhhHHHHHHHHhcccc
Q psy14631 113 EALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYDLFYRRKAISRELYDYCLAENIA 181 (308)
Q Consensus 113 e~lwpif~i~hq~~~~~~~~~~kIepTL~e~~~kmreaenrSEyLWpIy~IhHQISRYIYDlyy~e~~y 181 (308)
-+...-|-++|- -.+|.-| -..+.||+-++.+..||+
T Consensus 164 ~PVye~~~l~HL-------------------trRldvA-------------GRdiTryLi~LLl~rGYa 200 (389)
T KOG0677|consen 164 VPVYEGFVLPHL-------------------TRRLDVA-------------GRDITRYLIKLLLRRGYA 200 (389)
T ss_pred eeeecceehhhh-------------------hhhcccc-------------chhHHHHHHHHHHhhccc
Confidence 555566677776 1122111 224788999988888875
Done!