Query psy14631
Match_columns 308
No_of_seqs 175 out of 263
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 16:40:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pei_A PEPC22; transferase, nu 41.7 6.2 0.00021 25.5 0.2 17 182-198 6-22 (26)
2 2kpz_A E3 ubiquitin-protein li 41.6 6.3 0.00022 26.9 0.3 17 1-17 3-19 (49)
3 3o70_A PHD finger protein 13; 33.9 16 0.00055 26.5 1.4 33 235-270 14-49 (68)
4 3fwb_B Nuclear mRNA export pro 27.9 86 0.003 22.7 4.4 42 166-216 13-54 (55)
5 2i5u_A DNAD domain protein; st 25.8 1.1E+02 0.0036 22.4 4.7 21 197-218 49-74 (83)
6 2vnf_A ING 4, P29ING4, inhibit 24.0 18 0.00061 25.5 0.2 27 236-266 6-32 (60)
7 3fwc_B Nuclear mRNA export pro 23.3 1E+02 0.0034 23.8 4.3 43 165-216 42-84 (85)
8 3o7a_A PHD finger protein 13 v 23.0 27 0.00092 23.6 0.9 24 240-266 4-27 (52)
9 3nrw_A Phage integrase/site-sp 22.3 72 0.0025 22.9 3.2 36 182-217 72-107 (117)
10 2lv9_A Histone-lysine N-methyl 21.9 27 0.00092 26.6 0.8 29 240-271 28-59 (98)
No 1
>1pei_A PEPC22; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=41.73 E-value=6.2 Score=25.52 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=13.3
Q ss_pred cHHHHHHhhhhchhhhh
Q psy14631 182 DKNLIAKWKKQGYELYD 198 (308)
Q Consensus 182 drKLISKwkk~s~ELYe 198 (308)
...+|+||+..|+||-+
T Consensus 6 ~~eliskWe~kSre~I~ 22 (26)
T 1pei_A 6 SIDLIQKWEEKSREFIG 22 (26)
T ss_dssp HHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34689999999998743
No 2
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=41.64 E-value=6.3 Score=26.95 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCchhc
Q psy14631 1 MPKVRRTRKHLPDGWEL 17 (308)
Q Consensus 1 mpkvr~~~k~~p~g~e~ 17 (308)
|++-+.....+|+|||.
T Consensus 3 m~~~~~~~~~LP~gWe~ 19 (49)
T 2kpz_A 3 MGPSEIEQGFLPKGWEV 19 (49)
T ss_dssp ---------CCCTTEEE
T ss_pred CccccccCCCCCCCcEE
Confidence 66666777889999985
No 3
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=33.86 E-value=16 Score=26.46 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=22.9
Q ss_pred cCCCCCcceEeecccCcccCCceeecccccCc---cCcC
Q psy14631 235 RDTNFGTSCICRVPKVKLEEGRIVECIHCGCR---GCSG 270 (308)
Q Consensus 235 rdtnfgttCICRVPk~~l~~~~~veCv~CGCr---Gc~~ 270 (308)
.+.+.+..|||+.|.. .+..|+|-.|.-. .|.+
T Consensus 14 ~~~~~~~~CiC~~~~~---~~~MIqCd~C~~WfH~~Cvg 49 (68)
T 3o70_A 14 LYFQGLVTCFCMKPFA---GRPMIECNECHTWIHLSCAK 49 (68)
T ss_dssp CTTTTCCCSTTCCCCT---TCCEEECTTTCCEEETTTTT
T ss_pred CCCCCceEeECCCcCC---CCCEEECCCCCccccccccC
Confidence 3445678899998864 3468999988643 4554
No 4
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=27.85 E-value=86 Score=22.67 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHhcccccHHHHHHhhhhchhhhhHHHhhhhhhHHHHHHHhh
Q psy14631 166 AISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKK 216 (308)
Q Consensus 166 QISRYIYDlyy~e~~ydrKLISKwkk~s~ELYewcLkekyAD~nLIAKWkk 216 (308)
.+|.+||+-|+.|-+|.--+=+| +...|+-.++ +.-|.||.+
T Consensus 13 sLs~eLy~AFihE~lY~~~lesk----Ad~f~~~~lk-----k~~~~kw~~ 54 (55)
T 3fwb_B 13 TMTRELYDAFLHERLYLIYMDSR----AELKRNSTLK-----KKFFEKWQA 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----HHHHHHhhc
Confidence 46667777776666665544444 3344444444 445667754
No 5
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=25.80 E-value=1.1e+02 Score=22.36 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=14.0
Q ss_pred hhHHHhhh-----hhhHHHHHHHhhcC
Q psy14631 197 YDYCLAEN-----IADKNLIAKWKKQG 218 (308)
Q Consensus 197 YewcLkek-----yAD~nLIAKWkk~g 218 (308)
+++++.++ |+|+=|. .|++.|
T Consensus 49 ~~~av~~~~~~~~Yi~~IL~-~W~~~g 74 (83)
T 2i5u_A 49 IEIAIDANARNYNYINAILK-DWEQRG 74 (83)
T ss_dssp HHHHHHHTCCSHHHHHHHHH-HHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHH-HHHHcC
Confidence 67776655 7776664 488874
No 6
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=23.98 E-value=18 Score=25.48 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=19.5
Q ss_pred CCCCCcceEeecccCcccCCceeecccccCc
Q psy14631 236 DTNFGTSCICRVPKVKLEEGRIVECIHCGCR 266 (308)
Q Consensus 236 dtnfgttCICRVPk~~l~~~~~veCv~CGCr 266 (308)
|.+-.+.|+|+-|.. |..+.|-.|.|.
T Consensus 6 d~~e~~~C~C~~~~~----g~mi~CD~cdC~ 32 (60)
T 2vnf_A 6 DPNEPTYCLCHQVSY----GEMIGCDNPDCS 32 (60)
T ss_dssp ---CCEETTTTEECC----SEEEECSCTTCS
T ss_pred CCCCCCEEECCCcCC----CCEEEeCCCCCC
Confidence 556778899988753 779999998774
No 7
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=23.29 E-value=1e+02 Score=23.80 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHhcccccHHHHHHhhhhchhhhhHHHhhhhhhHHHHHHHhh
Q psy14631 165 KAISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKK 216 (308)
Q Consensus 165 HQISRYIYDlyy~e~~ydrKLISKwkk~s~ELYewcLkekyAD~nLIAKWkk 216 (308)
.-+|++||+=|+.|-+|.--+=+| +...|+-.++ +.-|.||++
T Consensus 42 ~sLs~eLy~AFihE~lY~~~lesk----Ad~f~~~~lk-----k~~~~kw~~ 84 (85)
T 3fwc_B 42 DTMTRELYDAFLHERLYLIYMDSR----AELKRNSTLK-----KKFFEKWQA 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----HHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----HHHHHHhhc
Confidence 456777888777777665555555 4455555555 455777764
No 8
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=22.97 E-value=27 Score=23.59 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=18.1
Q ss_pred CcceEeecccCcccCCceeecccccCc
Q psy14631 240 GTSCICRVPKVKLEEGRIVECIHCGCR 266 (308)
Q Consensus 240 gttCICRVPk~~l~~~~~veCv~CGCr 266 (308)
.+.|||+.|.. .+..|+|-.|.-.
T Consensus 4 ~~~C~C~~~~~---~~~MI~Cd~C~~W 27 (52)
T 3o7a_A 4 LVTCFCMKPFA---GRPMIECNECHTW 27 (52)
T ss_dssp CBCSTTCCBCT---TCCEEECTTTCCE
T ss_pred CeEEEeCCcCC---CCCEEEcCCCCcc
Confidence 46799998764 4578999987643
No 9
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=22.26 E-value=72 Score=22.90 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=25.4
Q ss_pred cHHHHHHhhhhchhhhhHHHhhhhhhHHHHHHHhhc
Q psy14631 182 DKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQ 217 (308)
Q Consensus 182 drKLISKwkk~s~ELYewcLkekyAD~nLIAKWkk~ 217 (308)
...-|++--..-+.+|.|++++|+++.|..+.-+.|
T Consensus 72 s~~Ti~~~ls~lr~f~~~l~~~g~i~~nP~~~v~~p 107 (117)
T 3nrw_A 72 SPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHVP 107 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSCTTSGGGCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHccCC
Confidence 344455544445679999999999999887765544
No 10
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=21.93 E-value=27 Score=26.61 Aligned_cols=29 Identities=31% Similarity=0.735 Sum_probs=21.0
Q ss_pred CcceEeecccCcccCCceeecccccCc---cCcCC
Q psy14631 240 GTSCICRVPKVKLEEGRIVECIHCGCR---GCSGG 271 (308)
Q Consensus 240 gttCICRVPk~~l~~~~~veCv~CGCr---Gc~~g 271 (308)
.+.|||+++.. .|..|.|-.|... .|.+.
T Consensus 28 ~vrCiC~~~~~---~~~mi~Cd~C~~w~H~~C~~~ 59 (98)
T 2lv9_A 28 VTRCICGFTHD---DGYMICCDKCSVWQHIDCMGI 59 (98)
T ss_dssp BCCCTTSCCSC---SSCEEEBTTTCBEEETTTTTC
T ss_pred CEEeECCCccC---CCcEEEcCCCCCcCcCcCCCC
Confidence 36799998863 5789999988754 46543
Done!