Query psy14631
Match_columns 308
No_of_seqs 175 out of 263
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 16:40:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14631.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14631hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u5ka2 g.45.1.2 (A:81-237) Re 37.2 6.3 0.00046 29.3 1.6 13 294-306 134-146 (157)
2 d1twfl_ g.41.9.2 (L:) RBP12 su 27.8 7.7 0.00056 26.1 0.6 17 250-266 14-30 (46)
3 d2ho2a1 b.72.1.1 (A:253-285) A 25.0 4.4 0.00032 25.9 -1.0 11 10-20 2-12 (33)
4 d2jmfa1 b.72.1.1 (A:521-553) U 18.2 14 0.001 22.6 0.3 9 10-18 2-10 (33)
5 d2cuja1 a.4.1.18 (A:8-108) Tra 18.1 33 0.0024 25.1 2.5 23 158-180 75-97 (101)
6 d1ou8a_ b.136.1.1 (A:) Stringe 15.2 22 0.0016 26.8 0.9 16 246-261 35-50 (106)
7 d1x6ma_ b.88.1.4 (A:) Glutathi 14.2 41 0.003 27.1 2.3 48 234-281 21-75 (196)
8 d1yfna1 b.136.1.1 (A:4-111) St 13.9 25 0.0019 26.6 0.9 16 246-261 37-52 (108)
9 d1pina1 b.72.1.1 (A:6-39) Mito 13.7 21 0.0016 21.5 0.3 7 11-17 2-8 (34)
10 d1g8fa2 c.26.1.5 (A:169-389) A 11.2 43 0.0031 26.9 1.6 34 75-108 2-35 (221)
No 1
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.21 E-value=6.3 Score=29.33 Aligned_cols=13 Identities=15% Similarity=0.583 Sum_probs=10.6
Q ss_pred hhHhHHhHhhhcc
Q psy14631 294 YHQSMEKYLQFHI 306 (308)
Q Consensus 294 ~~~~~~~~~~~~~ 306 (308)
..+.|..|+++|+
T Consensus 134 l~~~L~~y~~~Hl 146 (157)
T d1u5ka2 134 LWRALEKFVTVQV 146 (157)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 4577899999996
No 2
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.81 E-value=7.7 Score=26.06 Aligned_cols=17 Identities=35% Similarity=0.772 Sum_probs=14.3
Q ss_pred CcccCCceeecccccCc
Q psy14631 250 VKLEEGRIVECIHCGCR 266 (308)
Q Consensus 250 ~~l~~~~~veCv~CGCr 266 (308)
..+..+..+.|..||+|
T Consensus 14 ~~l~~~d~irCreCG~R 30 (46)
T d1twfl_ 14 LSLSRTDAVRCKDCGHR 30 (46)
T ss_dssp ECCCTTSTTCCSSSCCC
T ss_pred eEeCCCCcEEeccCCcE
Confidence 34778889999999998
No 3
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.02 E-value=4.4 Score=25.87 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=9.0
Q ss_pred CCCCchhchHH
Q psy14631 10 HLPDGWELIEP 20 (308)
Q Consensus 10 ~~p~g~e~ie~ 20 (308)
.+|+||+.|++
T Consensus 2 dLPpGW~ki~D 12 (33)
T d2ho2a1 2 DLPAGWMRVQD 12 (33)
T ss_dssp CSCTTEEEEEC
T ss_pred CCCCcceeeec
Confidence 47999998875
No 4
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=18.17 E-value=14 Score=22.63 Aligned_cols=9 Identities=56% Similarity=1.280 Sum_probs=6.2
Q ss_pred CCCCchhch
Q psy14631 10 HLPDGWELI 18 (308)
Q Consensus 10 ~~p~g~e~i 18 (308)
++|+|||..
T Consensus 2 pLP~GWe~~ 10 (33)
T d2jmfa1 2 PLPPGWEIR 10 (33)
T ss_dssp CCCTTEEEE
T ss_pred ccCCCeeEE
Confidence 578888753
No 5
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.09 E-value=33 Score=25.08 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=12.3
Q ss_pred hHhhhhhhhhhHHHHHHHHhccc
Q psy14631 158 YDLFYRRKAISRELYDYCLAENI 180 (308)
Q Consensus 158 WpIy~IhHQISRYIYDlyy~e~~ 180 (308)
-.++++....++.|||+|.+.|+
T Consensus 75 ~~~~kiD~~K~~rIydfl~~~GW 97 (101)
T d2cuja1 75 RALIKIDVNKTRKIYDFLIREGY 97 (101)
T ss_dssp HHHHTSCHHHHHHHHHHHHTTTS
T ss_pred HHHhcccHHHHHHHHHHHHHccC
Confidence 34445555555566666654444
No 6
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=15.19 E-value=22 Score=26.83 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=11.8
Q ss_pred ecccCcccCCceeecc
Q psy14631 246 RVPKVKLEEGRIVECI 261 (308)
Q Consensus 246 RVPk~~l~~~~~veCv 261 (308)
.||..-.+.|+++-=+
T Consensus 35 ~VP~~~v~dg~IvLNi 50 (106)
T d1ou8a_ 35 NVPVEYVKDGQIVLNL 50 (106)
T ss_dssp BCCGGGCBTTEEEEEC
T ss_pred cCCHHHccCCeEEEEc
Confidence 4888888888876544
No 7
>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
Probab=14.19 E-value=41 Score=27.08 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=25.9
Q ss_pred ccCCCCCc---ceEeecccCccc-CCceeecccccCccCc---CCCCCccccccc
Q psy14631 234 TRDTNFGT---SCICRVPKVKLE-EGRIVECIHCGCRGCS---GGLNQALTIVPT 281 (308)
Q Consensus 234 trdtnfgt---tCICRVPk~~l~-~~~~veCv~CGCrGc~---~g~~~~~~~~~~ 281 (308)
..+.+|.. +|.|.=-+...+ .+....=..|.|+-|- |+......+||.
T Consensus 21 ~~~~~f~GGtl~C~Cg~~~V~v~v~g~p~~~~~CHCs~CrK~tGs~f~~~~~v~~ 75 (196)
T d1x6ma_ 21 PAQPGFAGGTLHCKCSTNPVRVAVRAQTAHNHVCGCTKCWKPEGAIFSQVAVVGR 75 (196)
T ss_dssp CCCTTCCCEEEECSCSSSCCEEEECSCCEEEEEECCSSSCCCTTCSSEEEEEEEG
T ss_pred cCCCccCCCceeEeeCCEEEEEEECCCcceeEeecCccccCCcCCceeEEEEEec
Confidence 34445544 388853233322 2344444459999993 444455666664
No 8
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=13.87 E-value=25 Score=26.57 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=11.3
Q ss_pred ecccCcccCCceeecc
Q psy14631 246 RVPKVKLEEGRIVECI 261 (308)
Q Consensus 246 RVPk~~l~~~~~veCv 261 (308)
.||..-.+.|+++-=+
T Consensus 37 ~VP~~~v~dg~IvLNI 52 (108)
T d1yfna1 37 QVPMEYARDGQIVLNI 52 (108)
T ss_dssp BSCGGGCBTTEEEEEC
T ss_pred cCCHHHccCCeEEEEc
Confidence 4888878888776544
No 9
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.67 E-value=21 Score=21.49 Aligned_cols=7 Identities=71% Similarity=1.578 Sum_probs=4.6
Q ss_pred CCCchhc
Q psy14631 11 LPDGWEL 17 (308)
Q Consensus 11 ~p~g~e~ 17 (308)
+|+||+.
T Consensus 2 LP~GW~~ 8 (34)
T d1pina1 2 LPPGWEK 8 (34)
T ss_dssp CCTTEEE
T ss_pred cCCCcEE
Confidence 6777764
No 10
>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.20 E-value=43 Score=26.86 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=30.9
Q ss_pred hhcccChhhHHHhhhhccccccceeccccCCCCC
Q psy14631 75 SQLKLNPMKARERWKQNHFNSVFLFTAETEPHEG 108 (308)
Q Consensus 75 ~~~~~~~~~~~~~~k~~~~~~~~~~~ae~e~~~g 108 (308)
.++-+.|..-|+..++..+..|.-|+.-+-||-|
T Consensus 2 ~~~~~tP~e~r~~~~~~g~~~v~afqTrnp~Hr~ 35 (221)
T d1g8fa2 2 PGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRA 35 (221)
T ss_dssp TTTCCCHHHHHHHHHHTTCCCEEEEEESSCCCHH
T ss_pred ccccCCHHHHHHHHHHcCCCeEEEEecCCCCCHH
Confidence 3677899999999999999999999999999987
Done!