RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14631
(308 letters)
>gnl|CDD|216312 pfam01125, G10, G10 protein.
Length = 145
Score = 192 bits (489), Expect = 1e-61
Identities = 86/170 (50%), Positives = 97/170 (57%), Gaps = 57/170 (33%)
Query: 101 AETEPHEGKRKVEALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYDL 160
AE EPHEGKRK E LWPIF+IHHQ+S RY+YDL
Sbjct: 33 AENEPHEGKRKKELLWPIFRIHHQRS----------------------------RYVYDL 64
Query: 161 FYRRKAISRELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYV 220
+Y+RKAISRELYD+ L E AD NLIAKWKK GYE
Sbjct: 65 YYKRKAISRELYDWLLKEKYADANLIAKWKKPGYE------------------------- 99
Query: 221 QGYENLCCLRCIQTRDTNFGTSCICRVPKVKLEEGRIVECIHCGCRGCSG 270
LCCLRCIQT +TNFG +CICRVPK KLEE R V+C+HCGCRGC+
Sbjct: 100 ----KLCCLRCIQTGETNFGGTCICRVPKAKLEEKRFVQCVHCGCRGCAS 145
Score = 45.4 bits (108), Expect = 4e-06
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 1 MPKVRRTR-KHLPDGWELIEPTLEELEQKMREGRTIPFKEN 40
MP++R +R K P+G++ IEPTL+E E KMR+ P +
Sbjct: 1 MPRIRTSRTKKPPEGFDKIEPTLDEFEAKMRDAENEPHEGK 41
>gnl|CDD|227461 COG5132, BUD31, Cell cycle control protein, G10 family
[Transcription / Cell division and chromosome
partitioning].
Length = 146
Score = 138 bits (350), Expect = 8e-41
Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 57/160 (35%)
Query: 111 KVEALWPIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYDLFYRRKAISRE 170
K E LWPIF++HHQ+S RYIY+L+Y+R AIS +
Sbjct: 42 KPENLWPIFQLHHQRS----------------------------RYIYNLYYKRGAISTK 73
Query: 171 LYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQGYENLCCLR 230
LY + AD LIAKW K GYE LCCLR
Sbjct: 74 LYGWLSKNRYADHELIAKWDKVGYE-----------------------------KLCCLR 104
Query: 231 CIQTRDTNFGTSCICRVPKVKLEEGRIVECIHCGCRGCSG 270
CIQ ++ G++CICRVP+ L+ + ++C HCGCRGC+
Sbjct: 105 CIQPIESKHGSTCICRVPQRNLDVSQRLKCDHCGCRGCAS 144
Score = 38.4 bits (89), Expect = 0.001
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 1 MPKVRRTR-KHLPDGWELIEPTLEELEQKMREGRTIPFKENLTELLSE 47
MP++ R K PDG+E I PTLE+ E +MR+ P + E L
Sbjct: 1 MPRIPTNRSKPAPDGFEKIRPTLEKFEAEMRQAENAPLAPSKPENLWP 48
>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional.
Length = 681
Score = 29.4 bits (66), Expect = 2.7
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 2 PKV-RRTRKHLPDGWELIEPTLEELEQKMREGRTIPFKENLTELLSEQLFVDMKFFEITE 60
P+V R +H G E +EL++KMR +++ELLS L +DM++ + E
Sbjct: 512 PQVFARYARHYQSG----EAMPDELQEKMRNASLFNKGYDMSELLSAAL-LDMRWHCLEE 566
Query: 61 ISYKNH---FTKILLFCSQLKLNPMKARERWKQNHFNSVF 97
F L L L + R R ++F +F
Sbjct: 567 NEAMQDVDDFELRALVAENLDLPAVPPRYR--SSYFAHIF 604
>gnl|CDD|240340 PTZ00270, PTZ00270, variable surface protein Vir32; Provisional.
Length = 333
Score = 28.7 bits (64), Expect = 3.8
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 169 RELYDYCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQGYENLC 227
+ELYDYC+ K ++ + E+Y Y + DK ++ K K EN+C
Sbjct: 150 KELYDYCVNYETL-KGIVPFYDTNCREIYTY-----LKDKAVLYKEFKTHCSSTDENMC 202
>gnl|CDD|178628 PLN03079, PLN03079, Uncharacterized protein At4g33100; Provisional.
Length = 91
Score = 26.8 bits (59), Expect = 4.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 169 RELYDYCLAENIADKNLIAKWKKQG----YELYDYCLAENIADKNL 210
R Y C ++K + +W K+ + Y CL+E++ DK+L
Sbjct: 22 RTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEHLEDKHL 67
>gnl|CDD|149443 pfam08379, Bact_transglu_N, Bacterial transglutaminase-like
N-terminal region. This region is found towards the
N-terminus of various archaeal and bacterial
hypothetical proteins. Some of these are annotated as
being transglutaminase-like proteins, and in fact
contain a transglutaminase-like superfamily domain
(pfam01841).
Length = 82
Score = 26.7 bits (60), Expect = 5.1
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 65 NHFTKILLFCSQLKLNPMKARERWKQNHF-NSVFLFTAETEPHE 107
++L + L + P A ++ F N V F+ + EPH+
Sbjct: 30 GPGQRVLSW--SLTIEPAPAELTEYRDAFGNRVTRFSFD-EPHD 70
>gnl|CDD|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide
transport and metabolism].
Length = 554
Score = 28.4 bits (64), Expect = 5.2
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 155 RYIYD----LFYRRKAISRELY--DYCLAENIADKNLIAKWKKQGYELYDYCLA 202
+ +YD + + + I++E+Y D A K + ++KQG++ C+A
Sbjct: 433 KRLYDVEDPIEEKIEKIAKEIYGADGVEFSPKA-KEQLKTFEKQGFDNLPICMA 485
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 28.1 bits (62), Expect = 5.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 239 FGTSCICRVPKVKLEEGRIVECIHCGCRGCS--GGLNQALTIVPTLAENEEI 288
G CI +P+ K+ G++ + + G S G + AL V +A E I
Sbjct: 97 LGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPI 148
>gnl|CDD|226314 COG3791, COG3791, Uncharacterized conserved protein [Function
unknown].
Length = 133
Score = 27.0 bits (60), Expect = 7.4
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 236 DTNFGTSCICRVPKVKLE-EGRIVECIHCGCRGC---SGGLNQALTIVPTLAENEEIETS 291
G C+C V+ E EG C C C SG A +VP A
Sbjct: 2 SMIEG-GCLCG--AVRFEVEGDPGHVSACHCSDCRKASGAAFAAYAVVPRDALRGTRGLP 58
Query: 292 ALY 294
Y
Sbjct: 59 TYY 61
>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous
L-alpha-amino acid receptor GPRC6A which is a
broad-spectrum amino acid-sensing receptor. This family
includes the ligand-binding domain of the promiscuous
L-alpha-amino acid receptor GPRC6A which is a
broad-spectrum amino acid-sensing receptor, and its fish
homolog, the 5.24 chemoreceptor. GPRC6A is a member of
the family C of G-protein-coupled receptors that
transduce extracellular signals into G-protein
activation and ultimately into cellular responses.
Length = 403
Score = 27.9 bits (62), Expect = 7.6
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 27 QKMREGRTIPFKENLTELLSEQLFVDMKFFEITEISYKNHFTKILLFC--SQLKLNPMKA 84
Q G I FKE L LS+ ++ +I +N I++F + L KA
Sbjct: 195 QAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKA 254
Query: 85 RER 87
ER
Sbjct: 255 IER 257
>gnl|CDD|213371 cd12837, EcCorA-like_u1, uncharacterized subgroup of the
Escherichia coli Mg2+ transporter CorA_like subfamily.
A uncharacterized subgroup of the Escherichia coli
CorA-Salmonella typhimurium ZntB_like family
(EcCorA_ZntB-like) family of the MIT superfamily of
essential membrane proteins involved in transporting
divalent cations (uptake or efflux) across membranes.
The EcCorA_ZntB-like family includes the Mg2+
transporters Escherichia coli and Salmonella typhimurium
CorAs, which can also transport Co2+, and Ni2+.
Structures of the intracellular domain of
EcCorA_ZntB-like family members, Vibrio parahaemolyticus
and Salmonella typhimurium ZntB, form funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each monomer,
and the large opening of the funnel from the N-terminal
cytoplasmic domains. The GMN signature motif of the MIT
superfamily occurs just after TM1, mutation within this
motif is known to abolish Mg2+ transport through
Salmonella typhimurium CorA. Natural variants such as
GVN and GIN, such as occur in some ZntB family proteins,
may be associated with the transport of different
divalent cations, such as zinc and cadmium. The
functional diversity of MIT transporters may also be due
to minor structural differences regulating gating,
substrate selection, and transport.
Length = 298
Score = 27.5 bits (62), Expect = 8.1
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 274 QALTI-VPTLAENEEIETSA-LY 294
L I +PT E EIE S+ LY
Sbjct: 18 ALLGIAIPTREEMSEIEASSRLY 40
>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional.
Length = 448
Score = 27.7 bits (62), Expect = 9.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 16 ELIEPTLEELEQKMREGRTIPFKENLTELLSEQLF--VDMKFFE 57
+LIEP LE+L +++ E + E+ ++LS LF F
Sbjct: 404 DLIEPQLEKLREEIAE-----YAESEEDVLSYALFPQQAKDFLG 442
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 27.5 bits (62), Expect = 10.0
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 155 RYIYD----LFYRRKAISRELY---DYCLAENIADKNLIAKWKKQGYELYDYCLA 202
+++YD L + + I++++Y L+ K +A+++KQG+ C+A
Sbjct: 419 KFLYDLEDPLEDKIETIAKKIYGADGVELSPKAKKK--LARYEKQGFGNLPVCMA 471
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,596,101
Number of extensions: 1459124
Number of successful extensions: 1409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1404
Number of HSP's successfully gapped: 29
Length of query: 308
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 211
Effective length of database: 6,635,264
Effective search space: 1400040704
Effective search space used: 1400040704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)