RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14631
(308 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 5e-05
Identities = 60/337 (17%), Positives = 97/337 (28%), Gaps = 108/337 (32%)
Query: 9 KHLPDGWELIEPTLEELEQKMREGRTIPFKENLTELLSEQL-FVDMKFFEITEISYKNHF 67
K LP EPT E E T EL+ + L +V E S F
Sbjct: 39 KILP------EPT-EGFAAD-DEPTTPA------ELVGKFLGYVSSL----VEPSKVGQF 80
Query: 68 TKILLFCSQLKLNPMKARERWKQNHFNSVFL-------FTAETEPHEGKRKVEALWPIFK 120
++L L L F + +L A+ + + K
Sbjct: 81 DQVL----NLCLT-----------EFENCYLEGNDIHALAAKLLQENDT-TLVKTKELIK 124
Query: 121 IHHQKSEKGEMPKGKYGSTLLVICNFIVSAHQKSRYIYDLF--------YRRKAIS--RE 170
+ + P K ++ L + + + + +F Y R+
Sbjct: 125 NYITARIMAKRPFDKKSNSAL-----FRAVGEGNAQLVAIFGGQGNTDDY----FEELRD 175
Query: 171 LYD-YCLAENIADKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQGYENLCCL 229
LY Y + D LI K L + L D + + QG L L
Sbjct: 176 LYQTY--HVLVGD--LI---KFSAETLSE--LIRTTLDAEKV-------FTQGLNILEWL 219
Query: 230 RCIQTR-DTNFGTSC-----------------ICRVPKVKLEEGRIVECIHCGCRGCSGG 271
D ++ S ++ + G + + G G S G
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL--LGFTPGELRSYL-KGATGHSQG 276
Query: 272 LNQALTIVPTLAENEEIETSALYHQSMEKYLQ--FHI 306
L A+ I AE + E+ + S+ K + F I
Sbjct: 277 LVTAVAI----AETDSWES---FFVSVRKAITVLFFI 306
Score = 35.4 bits (81), Expect = 0.022
Identities = 43/250 (17%), Positives = 68/250 (27%), Gaps = 99/250 (39%)
Query: 135 KYGSTLLVICNFIVSAHQKSRYIYDLFYRRKAISRELYDYCLAENIADKNLIAK--WKKQ 192
YG ++L I V + + I+ + K I RE Y + E I D L + +K+
Sbjct: 1656 TYGFSILDI----VINNPVNLTIHFGGEKGKRI-RENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 193 GYELYDYC------------------LAENIADKNLIAKWKKQGYVQ------G-----Y 223
Y A K +G + G Y
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKA---AFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 224 ENLCC----------LRCIQTRDTNFGTSCICRVPKVKLEEGR----------------- 256
L + + R G + VP+ E GR
Sbjct: 1768 AALASLADVMSIESLVEVVFYR----GMTMQVAVPRD--ELGRSNYGMIAINPGRVAASF 1821
Query: 257 -------IVECI--HCG---------CRG----CSGGLNQAL-TIVPTLAENEE--IETS 291
+VE + G +G L +AL T+ L + I+
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL-RALDTVTNVLNFIKLQKIDII 1880
Query: 292 ALYHQ-SMEK 300
L S+E+
Sbjct: 1881 ELQKSLSLEE 1890
Score = 29.2 bits (65), Expect = 1.9
Identities = 29/179 (16%), Positives = 49/179 (27%), Gaps = 75/179 (41%)
Query: 4 VRRTRKHLPDGWELIE---------------P-TLEELEQKMREGRT--------IPFKE 39
V +T HLP G + +E P +L L +R+ + IPF E
Sbjct: 353 VNKTNSHLPAG-KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 40 NLTELLSEQLFVDMKFFEITEISYKNHFTKILLFCSQLKLNPMKARERWKQNHFNSVFLF 99
+L +F + P F+S L
Sbjct: 412 -------RKLKFSNRFLPVAS--------------------P-----------FHSHLLV 433
Query: 100 TAETEPHEGKRKVEALW-------PIFKIHHQKSEKGEMPKGKYGSTLLVICNFIVSAH 151
A ++ K + P++ + G + GS I + I+
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVY--D---TFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 28.5 bits (63), Expect = 3.5
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 15/60 (25%)
Query: 7 TRKHLPDGWELIEPTLEELEQKMREGRTIPFKE-----NLTE-------LLSEQLFVDMK 54
+ + DG E +E+ + F+ + T+ L+ + F D+K
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTS---YTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Score = 28.5 bits (63), Expect = 3.7
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 56 FEITEISYKNHFTKILLFCSQLKLNPMKARERWKQNHFNSVFLFTAETEPHEGKRKVEAL 115
F I +I N + F + K + R ++N+ +F ET +GK K E
Sbjct: 1659 FSILDIVINNPVNLTIHFGGE------KGK-RIRENYSAMIF----ETIV-DGKLKTE-- 1704
Query: 116 WPIFKIHHQKSEKG--EMPKGKYGST 139
IFK ++ S KG +T
Sbjct: 1705 -KIFKEINEHSTSYTFRSEKGLLSAT 1729
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 32/168 (19%)
Query: 122 HHQKSEKGEMPKGKYGSTLLVIC-NFIVSAHQKSRYIYDLFYRRKAISRELYDYCLAENI 180
HH E GE + +Y L V F+ + + + D + +S+E D+ +
Sbjct: 5 HHMDFETGEH-QYQYKDILSVFEDAFV--DNFDCKDVQD--MPKSILSKEEIDHIIMSKD 59
Query: 181 ADKN---LIAKWKKQGYELYDYCLAENIADKN---LIAKWKKQGYVQGYENLCCLRCIQT 234
A L + E+ E + N L++ K + Q ++ I+
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTE-QRQ--PSMMTRMYIEQ 115
Query: 235 RDTNFGTS------CICRVPKV--------KLEEGRIVECIHCGCRGC 268
RD + + + R+ +L + V I G G
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LID-GVLGS 161
Score = 29.8 bits (66), Expect = 1.4
Identities = 18/201 (8%), Positives = 47/201 (23%), Gaps = 65/201 (32%)
Query: 27 QKMREGRTIPFKENLTELLSEQLF---VDMKFFEITEISYKNHFTKILLFCSQLKLNPMK 83
LT + L +D + ++ + ++ + ++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR--DGL 341
Query: 84 AR-ERWKQ---NHFNSVFLFTAETEPHEGKRKVEALWPIFKIHHQKSEKGEMPKGKYGST 139
A + WK + ++ + + L P E
Sbjct: 342 ATWDNWKHVNCDKLTTII-----------ESSLNVLEP-----------AEY-------- 371
Query: 140 LLVICNFIVSAHQKSRYIYDLFYRRKAISRELYDYCLAENIADKNLIAKWKKQGYELYDY 199
R ++D ++ +I L W
Sbjct: 372 ---------------RKMFDRL----SVFPP--S----AHIPTILLSLIWFDVIKSDVMV 406
Query: 200 CLAENIADKNLIAKWKKQGYV 220
+ + + +L+ K K+ +
Sbjct: 407 VVNK-LHKYSLVEKQPKESTI 426
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 32.9 bits (75), Expect = 0.13
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 148 VSAHQKSRYIYDLFYRRKAISRELYD------------YCLAENIADKNLIAKWKKQGYE 195
+AHQ R + + I+ ++ + + ++ DK K ++ +
Sbjct: 122 FAAHQPHRSLEN------QIASDMLATGADVMLSGGLRHWIPKSTNDKGETYKQLEKLTQ 175
Query: 196 LYDYCLAENIADKNLIAKWKKQGY 219
Y ++ D+NL+ + +K GY
Sbjct: 176 GDVYLKSKRKDDRNLLTEAEKDGY 199
Score = 27.9 bits (62), Expect = 4.4
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 182 DKNLIAKWKKQGYEL 196
D+NL+ + +K GY+L
Sbjct: 187 DRNLLTEAEKDGYQL 201
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 32.1 bits (73), Expect = 0.21
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 34/104 (32%)
Query: 148 VSAHQKSRYIYDLFYRRKAISRELYDYCLAENIA-------------------------- 181
+ AH SR Y + + +I
Sbjct: 159 LVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAG 218
Query: 182 ---DKNLIAKWKKQGYELYDYCLAENIADKNLIAKWKKQGYVQG 222
K L + + +GY+ L + A N + + +Q + G
Sbjct: 219 EWQGKTLREQAQARGYQ-----LVSDAASLNSVTEANQQKPLLG 257
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 31.7 bits (72), Expect = 0.33
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 19/62 (30%)
Query: 148 VSAHQKSRYIYDLFYRRKAISRELYD-------------YCLAENIADKNLIAKWKKQGY 194
+AH + R I+R+ + A+ L+ + GY
Sbjct: 176 FAAHVEDRGNQT------EIARQYIEETQPDVILGGQRRDFEADASNGGTLVDAARDNGY 229
Query: 195 EL 196
+
Sbjct: 230 TI 231
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 29.6 bits (67), Expect = 1.4
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 17/60 (28%)
Query: 149 SAHQKSRYIYDLFYRRKAISRELY----DYCL-------AENIADKNLIAKWKKQGYELY 197
AH +R + + I+ ++ D+ + K+++A K + +
Sbjct: 142 YAHALNRGLEE------EIAMDMTESDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTIN 195
Score = 27.3 bits (61), Expect = 8.0
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 207 DKNLIAKWKKQGYV 220
K+++A K +
Sbjct: 180 KKDVLAILKGNQFT 193
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 28.9 bits (65), Expect = 2.6
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 148 VSAHQKSRYIYDLFYRRKAISRELY----DYCL---AENIADKNLIAKWKKQGYEL 196
H +SR Y+ AI+ ++ D L + + L++++ +GY+
Sbjct: 115 FLTHNESRKNYE------AIAADMLKSDADVILGGGRKYF-SEALVSQFSAKGYQH 163
>1lsg_A Hen egg white lysozyme; fibrinogen, hybrid protein; 2.40A {Gallus
gallus} SCOP: d.2.1.2
Length = 144
Score = 26.6 bits (58), Expect = 6.2
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 213 KWKKQGYVQGYENLCCLRCIQTRDTNFGTSCICRVPKVKLEEG 255
W G G NLC + C ++ S C V G
Sbjct: 63 WWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNG 105
>2vb1_A Lysozyme C; antimicrobial, triclinic HEWL, atomic resolution,
allergen, hydrolase, glycosidase, bacteriolytic enzyme;
HET: EDO; 0.65A {Gallus gallus} SCOP: d.2.1.2 PDB:
194l_A 1aki_A 1azf_A 1b0d_A* 1b2k_A 1bgi_A 1bhz_A 1bvk_C
1bvx_A 1bwh_A 1bwi_A 1bwj_A 1c08_C 1c10_A 1dpw_A 1dpx_A
1dqj_C 1e8l_A 1f0w_A 1f10_A ...
Length = 129
Score = 26.2 bits (57), Expect = 7.5
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 213 KWKKQGYVQGYENLCCLRCIQTRDTNFGTSCICRVPKVKLEEG 255
W G G NLC + C ++ S C V G
Sbjct: 62 WWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNG 104
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 27.3 bits (59), Expect = 9.0
Identities = 9/61 (14%), Positives = 12/61 (19%)
Query: 214 WKKQGYVQGYENLCCLRCIQTRDTNFGTSCICRVPKVKLEEGRIVECIHCGCRGCSGGLN 273
+ LR + +C C C CR S G
Sbjct: 438 LRHTSLGPLEAKRQNLRRALDQYLMEFNACRCGPCFNNGVPILEGTSCRCQCRLGSLGAA 497
Query: 274 Q 274
Sbjct: 498 C 498
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,798,213
Number of extensions: 281262
Number of successful extensions: 874
Number of sequences better than 10.0: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 35
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)