BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14634
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BZE|A Chain A, Nmr Structure Of Human Rtf1 Plus3 Domain
Length = 153
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 64/82 (78%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+ +
Sbjct: 71 VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFS 130
Query: 189 EGVALPTKDEVERKSKEIQNGM 210
G+ LPT DE+ +K I+ +
Sbjct: 131 AGMQLPTLDEINKKELSIKEAL 152
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 334 IETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
+ EELNR+RLSR K+E+ H+P F + V GCFVRIGIGN+ P+YRV+E
Sbjct: 22 VSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 73
>pdb|2DB9|A Chain A, Solution Structure Of The Plus-3 Domain Of Human Kiaa0252
Protein
Length = 149
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 63/79 (79%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+ +
Sbjct: 63 VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFS 122
Query: 189 EGVALPTKDEVERKSKEIQ 207
G+ LPT DE+ +K I+
Sbjct: 123 AGMQLPTLDEINKKELSIK 141
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 334 IETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
+ EELNR+RLSR K+E+ H+P F + V GCFVRIGIGN+ P+YRV+E
Sbjct: 14 VSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 65
>pdb|3U1U|A Chain A, Crystal Structure Of Rna Polymerase-Associated Protein
Rtf1 Homolog Plus-3 Domain
pdb|3U1U|B Chain B, Crystal Structure Of Rna Polymerase-Associated Protein
Rtf1 Homolog Plus-3 Domain
Length = 137
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 61/79 (77%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF +WK+ +
Sbjct: 57 VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFXKWKEAXFS 116
Query: 189 EGVALPTKDEVERKSKEIQ 207
G LPT DE+ +K I+
Sbjct: 117 AGXQLPTLDEINKKELSIK 135
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 334 IETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
+ EELNR+RLSR K+E+ H P F + V GCFVRIGIGN+ P+YRV+E
Sbjct: 8 VSLPEELNRVRLSRHKLERWCHXPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 59
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 12 TLETFVFQKSKQIFPMGGLFLIPSAFQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKI 71
T FVF + GGL+ + + F +R+ E+FK Y + +LM+ D ++
Sbjct: 319 TSSRFVFGTDISVDSKGGLWFMSNGFPPIRKSEKFK-----YDFPRYRLMRIMDTQEAIA 373
Query: 72 GES 74
G +
Sbjct: 374 GTA 376
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 231 PTPYNYAMKKTQLMKERDMAQSKGDDEEASIL 262
PTPY+ ++K L+K + M + GDDEE + L
Sbjct: 457 PTPYD--LRKKILIKNKKMHKGTGDDEELAGL 486
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 300 EEAEKAIMVSCCCCCSGFSYRSVK-------SSASRKVIEYIETKEELNRI-RLSRFKME 351
EEA K VS C C GF YR+ K ++A + + E++ I R F+ E
Sbjct: 124 EEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE 183
Query: 352 KLV 354
K++
Sbjct: 184 KIL 186
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 300 EEAEKAIMVSCCCCCSGFSYRSVK-------SSASRKVIEYIETKEELNRI-RLSRFKME 351
EEA K VS C C GF YR+ K ++A + + E++ I R F+ E
Sbjct: 124 EEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE 183
Query: 352 KLV 354
K++
Sbjct: 184 KIL 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,680,830
Number of Sequences: 62578
Number of extensions: 419155
Number of successful extensions: 947
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 18
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)