BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14634
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAD5|RTF1_PONAB RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo
abelii GN=RTF1 PE=2 SV=2
Length = 665
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/180 (56%), Positives = 140/180 (77%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+ +
Sbjct: 397 VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFS 456
Query: 189 EGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERD 248
G+ LPT DE+ +K I+ + Y++ ++D+E+IV+EKERF+ P NYAMKKTQL+KE+
Sbjct: 457 AGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKA 516
Query: 249 MAQSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVEEAEKAIMV 308
MA+ GD ++A +Q ++++LEERA LD+ RT IS+ISYIN RNR N+ E+EKA++
Sbjct: 517 MAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVA 576
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 338 EELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
EELNR+RLSR K+E+ H+P F + V GCFVRIGIGN+ P+YRV+E
Sbjct: 352 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 399
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 38 QIVREKERFKPTPYNYAMKKTQLMKERDMAQ 68
+IV+EKERF+ P NYAMKKTQL+KE+ MA+
Sbjct: 489 EIVKEKERFRKAPPNYAMKKTQLLKEKAMAE 519
>sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens
GN=RTF1 PE=1 SV=4
Length = 710
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/180 (56%), Positives = 140/180 (77%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+ +
Sbjct: 402 VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFS 461
Query: 189 EGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERD 248
G+ LPT DE+ +K I+ + Y++ ++D+E+IV+EKERF+ P NYAMKKTQL+KE+
Sbjct: 462 AGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKA 521
Query: 249 MAQSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVEEAEKAIMV 308
MA+ GD ++A +Q ++++LEERA LD+ RT IS+ISYIN RNR N+ E+EKA++
Sbjct: 522 MAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVA 581
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 338 EELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
EELNR+RLSR K+E+ H+P F + V GCFVRIGIGN+ P+YRV+E
Sbjct: 357 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 404
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 38 QIVREKERFKPTPYNYAMKKTQLMKERDMAQ 68
+IV+EKERF+ P NYAMKKTQL+KE+ MA+
Sbjct: 494 EIVKEKERFRKAPPNYAMKKTQLLKEKAMAE 524
>sp|A2AQ19|RTF1_MOUSE RNA polymerase-associated protein RTF1 homolog OS=Mus musculus
GN=Rtf1 PE=2 SV=1
Length = 715
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/180 (56%), Positives = 140/180 (77%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+ +
Sbjct: 407 VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFS 466
Query: 189 EGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERD 248
G+ LPT DE+ +K I+ + Y++ ++D+E+IV+EKERF+ P NYAMKKTQL+KE+
Sbjct: 467 AGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKA 526
Query: 249 MAQSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVEEAEKAIMV 308
MA+ GD ++A +Q ++++LEERA LD+ RT IS+ISYIN RNR N+ E+EKA++
Sbjct: 527 MAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVA 586
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 338 EELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
EELNR+RLSR K+E+ H+P F + V GCFVRIGIGN+ P+YRV+E
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 409
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 38 QIVREKERFKPTPYNYAMKKTQLMKERDMAQ 68
+IV+EKERF+ P NYAMKKTQL+KE+ MA+
Sbjct: 499 EIVKEKERFRKAPPNYAMKKTQLLKEKAMAE 529
>sp|Q9W261|RTF1_DROME RNA polymerase-associated protein Rtf1 OS=Drosophila melanogaster
GN=Rtf1 PE=1 SV=1
Length = 775
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 138/179 (77%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI GV ETGKIYSLG TRTN+GL+L+HG ERVFRLEFISNQEFTE+EF +W + C
Sbjct: 477 VAEIVGVVETGKIYSLGTTRTNRGLRLKHGTQERVFRLEFISNQEFTENEFNKWNEVCQQ 536
Query: 189 EGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERD 248
V +PT D + K +I+ + Y++K+EDV++IV EK RF+ P NYAMKKT LMKERD
Sbjct: 537 SHVQMPTIDLIAIKQNDIKKALNYEFKDEDVDKIVEEKNRFRNRPTNYAMKKTCLMKERD 596
Query: 249 MAQSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVEEAEKAIM 307
A +GD + A L ++ID+LE RA+ELDK R+ T++ ISYIN+RNR+KNVE+AEKAI+
Sbjct: 597 AAMLRGDYDIAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRKKNVEDAEKAIL 655
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 333 YIETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
+I T+E+LN++RLSR+KME+ V+LPIF V+ CFVRI IGNN P+YRV+E
Sbjct: 427 FITTREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNNGQKPVYRVAE 479
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 38 QIVREKERFKPTPYNYAMKKTQLMKERDMA 67
+IV EK RF+ P NYAMKKT LMKERD A
Sbjct: 569 KIVEEKNRFRNRPTNYAMKKTCLMKERDAA 598
>sp|O94667|RTF1_SCHPO RNA polymerase-associated protein C651.09c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC651.09c PE=1 SV=1
Length = 560
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 95/171 (55%)
Query: 131 EISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEG 190
++ G+ E+ K Y + T L+ HG S+RVF + +SN+ F++ +F RW Q M +
Sbjct: 265 QVKGILESRKPYRVDGVLTKVSLECFHGRSKRVFDVNVLSNEPFSDHDFQRWHHQMMEDK 324
Query: 191 VALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMA 250
+++P+K+ V+RK ++++ Y E++V I+ K+ P N A +KT+L + R A
Sbjct: 325 LSMPSKNFVQRKLNDLRDMSKYVLSEKEVSDIINRKKELSRVPSNIAAEKTRLRQRRQAA 384
Query: 251 QSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVEE 301
G+ E + +++ LEE + ++ S + ++ +N RNRR+N E
Sbjct: 385 YVAGNAELVKEIDDQLNTLEELSMGSNQNSNSAMDQLAKVNERNRRRNHTE 435
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 339 ELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRV 383
+LN IRL R + + ++ PIF V GCFVR+ IG G +YR+
Sbjct: 219 DLNAIRLGRKHVAEYMYHPIFESTVTGCFVRVKIGERDGQGVYRL 263
>sp|P53064|RTF1_YEAST RNA polymerase-associated protein RTF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RTF1 PE=1 SV=2
Length = 558
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 115/252 (45%), Gaps = 29/252 (11%)
Query: 140 KIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEV 199
K Y++GK TN+ + G +VF++ + S+ F E E+ R+ + P+ +
Sbjct: 299 KPYNMGKFYTNQYFGVTQGKDRKVFQMNYFSDGLFAEDEYQRYLRALDNSQMIKPSLHSL 358
Query: 200 ERKSKEIQNGMMYQWKEEDVEQIVREKERF--KPTPYNYAMKKTQLMKERDMAQSKGDDE 257
K+KE+ + + ++ +++VR + +F K + N ++KT L ++ A+ +++
Sbjct: 359 SNKTKEVMDFVNTPLTDKTTDEVVRHRMQFNKKLSGTNAVLEKTVLREKLQYAKETNNEK 418
Query: 258 EASILQRKIDDLEERANELDKAR---TSTISSISYINNRNRR------KNVEEAEKAIMV 308
+ + ++ + E+R + +K S I + + ++NR+ +N E +K
Sbjct: 419 DIAKYSAQLRNFEKRMSVYEKHHENDQSDIKKLGELTSKNRKLNMSNIRNAEHVKKEDSN 478
Query: 309 SCCCCCSGFS---------YRSVKSSASRKVIEYIETKEELNRIRLSRFKMEKLVHLPIF 359
+ FS Y+ ++ + K E I +E+L + ++ K EK
Sbjct: 479 NFDSKSDPFSRLKTRTKVYYQEIQKEENAKAKE-IAQQEKLQEDKDAKDKREK------- 530
Query: 360 GQIVIGCFVRIG 371
++++ F R+G
Sbjct: 531 -ELLVAQFRRLG 541
>sp|Q8CIS0|CAR11_MOUSE Caspase recruitment domain-containing protein 11 OS=Mus musculus
GN=Card11 PE=1 SV=2
Length = 1159
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 228 RFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDK----ARTST 283
+ K YN AM+ QL +E++MA + D LQ +ID L+ R N++++ R +
Sbjct: 196 KVKDDNYNLAMRYAQLSEEKNMAVMRSRD-----LQLEIDQLKHRLNKMEEECKLERNQS 250
Query: 284 ISSISYINNRNRRKNVEEAEK 304
+ + I NR R++ V E E+
Sbjct: 251 LKLKNDIENRPRKEQVLELER 271
>sp|Q9BXL7|CAR11_HUMAN Caspase recruitment domain-containing protein 11 OS=Homo sapiens
GN=CARD11 PE=1 SV=3
Length = 1154
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 228 RFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDK----ARTST 283
+ K YN AM+ QL +E++MA + D LQ +ID L+ R N++++ R +
Sbjct: 196 KVKDDNYNLAMRYAQLSEEKNMAVMRSRD-----LQLEIDQLKHRLNKMEEECKLERNQS 250
Query: 284 ISSISYINNRNRRKNVEEAEK 304
+ + I NR +++ V E E+
Sbjct: 251 LKLKNDIENRPKKEQVLELER 271
>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
Length = 3433
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 249 MAQSKGDDEEASILQRKIDDLEERANELDKARTSTI 284
M ++ G+ EEA++LQ ++DD+ +R N+L KA++++I
Sbjct: 2516 MVKALGNSEEATMLQHRLDDMNQRWNDL-KAKSASI 2550
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana
GN=NERD PE=1 SV=3
Length = 1773
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 131 EISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWK 183
++ G + + Y +GK T+ L++ + + V ++ ISNQ+FTE E R K
Sbjct: 996 QVVGTSKAPEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTEDECKRLK 1048
>sp|Q6MAN0|PKND_PARUW Serine/threonine-protein kinase PknD OS=Protochlamydia amoebophila
(strain UWE25) GN=pknD PE=3 SV=1
Length = 982
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 257 EEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVEEAEKAIMVSCCCCCSG 316
E+A + K+ LEE NE +K + + + Y+ +++ ++E+ I C
Sbjct: 575 EQAKTAENKMPLLEEALNEFEKLHGTPSAPLEYLGKALAYESINDSEEEIK------CYE 628
Query: 317 FSYR-----SVKSSASRKVIEYIETKEELNRIRLSRFKMEKLVHLPI 358
+YR + ++I + + RI RF + + HLP+
Sbjct: 629 LAYRRYPNHPILPMLQEQIISRLHEVSRMQRITTYRFTLLTVRHLPL 675
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,393,850
Number of Sequences: 539616
Number of extensions: 5840500
Number of successful extensions: 21029
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 20834
Number of HSP's gapped (non-prelim): 355
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)