Query psy14634
Match_columns 388
No_of_seqs 259 out of 337
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:44:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bze_A KIAA0252 protein; human 100.0 7E-35 2.4E-39 260.2 11.9 123 89-211 23-153 (153)
2 3u1u_A RNA polymerase-associat 100.0 3E-35 1E-39 258.0 7.9 120 90-209 10-137 (137)
3 3u1u_A RNA polymerase-associat 99.8 4.5E-21 1.5E-25 168.0 4.8 59 330-388 4-62 (137)
4 2bze_A KIAA0252 protein; human 99.8 8.5E-21 2.9E-25 169.2 5.7 61 328-388 16-76 (153)
5 1gp8_A Protein (scaffolding pr 81.3 1.9 6.4E-05 30.1 4.0 34 236-269 6-39 (40)
6 3do9_A UPF0302 protein BA_1542 73.7 3.5 0.00012 37.6 4.7 34 238-271 149-182 (188)
7 1e52_A Excinuclease ABC subuni 63.0 14 0.00047 28.0 5.3 37 236-272 22-58 (63)
8 1g6u_A Domain swapped dimer; d 58.5 27 0.00092 24.5 5.7 35 242-276 4-39 (48)
9 2lf0_A Uncharacterized protein 57.6 10 0.00035 32.3 4.1 37 240-276 19-55 (123)
10 1yzm_A FYVE-finger-containing 53.8 37 0.0013 24.8 6.0 38 239-276 10-47 (51)
11 1z0k_B FYVE-finger-containing 50.1 40 0.0014 26.1 6.0 38 239-276 28-65 (69)
12 1z0j_B FYVE-finger-containing 49.5 46 0.0016 25.0 6.1 38 239-276 17-54 (59)
13 4b6x_A AVRRPS4, avirulence pro 48.7 73 0.0025 25.5 7.5 36 241-276 39-74 (90)
14 3pxg_A Negative regulator of g 46.7 98 0.0034 30.8 10.1 67 164-230 292-365 (468)
15 3v1a_A Computational design, M 43.3 64 0.0022 23.3 5.8 35 239-273 9-43 (48)
16 1h8b_A ACT-EF34, alpha-actinin 41.1 55 0.0019 24.8 5.7 41 175-227 8-48 (75)
17 3lqv_P Splicing factor 3B subu 41.0 24 0.00081 24.5 3.1 15 209-223 18-32 (39)
18 2p4v_A Transcription elongatio 35.1 66 0.0023 27.9 5.9 45 213-263 5-49 (158)
19 2pih_A Protein YMCA; regulate 34.6 2E+02 0.0067 24.6 8.9 80 192-274 2-83 (151)
20 2wt7_B Transcription factor MA 31.3 59 0.002 26.3 4.5 62 203-271 8-69 (90)
21 3na7_A HP0958; flagellar bioge 30.6 1.6E+02 0.0055 27.1 8.1 39 333-374 174-212 (256)
22 1hlv_A CENP-B, major centromer 30.5 76 0.0026 25.4 5.2 40 171-211 73-112 (131)
23 2kkp_A Phage integrase; SAM-li 27.7 1.9E+02 0.0065 21.5 7.4 86 169-254 2-93 (117)
24 3p7i_A PHND, subunit of alkylp 27.7 72 0.0025 30.1 5.3 74 204-277 228-311 (321)
25 1x4t_A Hypothetical protein LO 27.0 1.8E+02 0.0061 23.6 6.6 42 175-228 22-70 (92)
26 3n5l_A Binding protein compone 26.3 76 0.0026 29.5 5.1 71 204-274 219-299 (310)
27 2fho_A Spliceosomal protein SF 24.1 19 0.00065 26.0 0.4 15 210-224 18-32 (47)
28 2b5u_A Colicin E3; high resolu 23.6 1.5E+02 0.005 31.0 6.9 16 210-225 287-302 (551)
29 1wle_A Seryl-tRNA synthetase; 23.2 1.2E+02 0.0042 31.2 6.3 63 192-254 39-107 (501)
30 1hbw_A Regulatory protein GAL4 22.8 25 0.00084 26.3 0.7 31 197-227 6-36 (57)
31 1u00_A HSC66, chaperone protei 22.3 3.6E+02 0.012 24.2 8.7 97 165-273 107-204 (227)
32 2bkm_A Truncated hemoglobin fr 22.2 97 0.0033 25.2 4.4 38 173-210 79-120 (128)
33 1nha_A TFIIF-alpha, transcript 20.7 1.6E+02 0.0053 23.5 5.0 49 170-230 15-66 (82)
34 3lay_A Zinc resistance-associa 20.7 1.5E+02 0.0051 26.4 5.6 19 255-273 111-129 (175)
35 2f23_A Anti-cleavage anti-GREA 20.4 1.9E+02 0.0066 24.7 6.2 38 213-257 6-43 (156)
36 2r6a_C DNAG primase, helicase 20.2 2E+02 0.0069 22.8 6.0 56 213-273 85-140 (143)
No 1
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=100.00 E-value=7e-35 Score=260.20 Aligned_cols=123 Identities=42% Similarity=0.693 Sum_probs=116.8
Q ss_pred cccccccEEEechHHHHhccc--cCccccccceeec------CCCceEEEEEEeeeecCceeecCCeeeeeEEEEeecCc
Q psy14634 89 GIEPEIVEVVYKKDLISSAMF--YGSVCDLTSWHIF------SSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNS 160 (388)
Q Consensus 89 ~~~~~i~~I~l~Rd~L~k~~~--yfe~~v~G~fvR~------g~~vYRm~eI~gV~e~~K~Y~lg~~~TnkyL~L~hG~~ 160 (388)
++-.||++|+|+|++|++||+ +|+.++.|||||+ |+++||||||+||.+++|+|+++++.||+||.|+||+.
T Consensus 23 ~~l~di~~irL~Rs~l~~~~~~P~Fe~~V~GcFVRV~ig~~~~~~~YRl~qI~gv~~~~k~Y~l~~~~T~~~L~l~~g~~ 102 (153)
T 2bze_A 23 SLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGND 102 (153)
T ss_dssp CCHHHHHHSEECHHHHHHHSSSSSCHHHHTTCEEEEESSTTSSSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESSSC
T ss_pred CCHHHhhheEEEHHHHHHHhcCCchhHheEEEEEEEEeCCCCCCccEEEEEEEeEEecCcccccCCcccceEEEEEECCc
Confidence 444589999999999999998 9999999999997 45799999999999899999999999999999999999
Q ss_pred eeeeeeeeccCCcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q psy14634 161 ERVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMM 211 (388)
Q Consensus 161 eR~f~m~~VSNspfTe~EF~Rw~~~~~~~~~~lPT~~~V~~K~~dI~k~~n 211 (388)
+|.|+|++|||||||++||++|++.|+++++++||+++|++|.++|++|+|
T Consensus 103 ~r~~~m~~vSN~~fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~i~~a~n 153 (153)
T 2bze_A 103 QRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN 153 (153)
T ss_dssp EEEECGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHHHC-
T ss_pred ceEEEeeEeeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999975
No 2
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=100.00 E-value=3e-35 Score=258.00 Aligned_cols=120 Identities=43% Similarity=0.707 Sum_probs=113.5
Q ss_pred ccccccEEEechHHHHhccc--cCccccccceeec------CCCceEEEEEEeeeecCceeecCCeeeeeEEEEeecCce
Q psy14634 90 IEPEIVEVVYKKDLISSAMF--YGSVCDLTSWHIF------SSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSE 161 (388)
Q Consensus 90 ~~~~i~~I~l~Rd~L~k~~~--yfe~~v~G~fvR~------g~~vYRm~eI~gV~e~~K~Y~lg~~~TnkyL~L~hG~~e 161 (388)
+-.||++|+|+|++|++||+ +|+..+.|||||+ |+++||||+|+||.+++++|+++++.||+||.|+||+.+
T Consensus 10 ~l~dl~~i~L~R~~l~~~~~~P~Fe~~V~GcFVRv~ig~~~~~~~Yrl~qI~gv~~~~k~Y~l~~~~T~~~L~l~~g~~~ 89 (137)
T 3u1u_A 10 LPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQ 89 (137)
T ss_dssp SHHHHHTTBCCHHHHHHHTTSTTHHHHHTTCEEEEEEEC----CEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEETTEE
T ss_pred CHHHhcceEEEHHHHHHHhcCCChhHheEEEEEEEEeCCCCCCccEEEEEEEEEEecCcccccCCceeeEEEEEEeCCcc
Confidence 44579999999999999998 8999999999997 467999999999998999999999999999999999999
Q ss_pred eeeeeeeccCCcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q psy14634 162 RVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNG 209 (388)
Q Consensus 162 R~f~m~~VSNspfTe~EF~Rw~~~~~~~~~~lPT~~~V~~K~~dI~k~ 209 (388)
+.|+|+.|||||||++||++|+++|.++++++||+++|++|.++|++|
T Consensus 90 r~~~~~~vSN~~fte~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~i~~a 137 (137)
T 3u1u_A 90 RVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA 137 (137)
T ss_dssp EEEEGGGBCSSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHTCCC
T ss_pred eEEEeeeecCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999865
No 3
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=99.82 E-value=4.5e-21 Score=167.96 Aligned_cols=59 Identities=51% Similarity=0.882 Sum_probs=52.6
Q ss_pred cccccccHhhhcceeechhhhhhhhcCCchhhhhccceEEEeecCCCCCCceEEEEecC
Q psy14634 330 VIEYIETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSENFC 388 (388)
Q Consensus 330 ~~~~~~~l~d~~~irl~R~~l~k~~~~P~F~~~v~gcfvRv~iG~~~g~~~YR~~~I~~ 388 (388)
...|+++++||++|+|+|+.|++|||+|+|+++|.||||||+||+++|+|+||||+|+|
T Consensus 4 ~~~~v~~l~dl~~i~L~R~~l~~~~~~P~Fe~~V~GcFVRv~ig~~~~~~~Yrl~qI~g 62 (137)
T 3u1u_A 4 KSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITG 62 (137)
T ss_dssp TTSBCCSHHHHHTTBCCHHHHHHHTTSTTHHHHHTTCEEEEEEEC----CEEEEEEEEE
T ss_pred CcCCCCCHHHhcceEEEHHHHHHHhcCCChhHheEEEEEEEEeCCCCCCccEEEEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999985
No 4
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=99.81 E-value=8.5e-21 Score=169.24 Aligned_cols=61 Identities=49% Similarity=0.863 Sum_probs=57.1
Q ss_pred cccccccccHhhhcceeechhhhhhhhcCCchhhhhccceEEEeecCCCCCCceEEEEecC
Q psy14634 328 RKVIEYIETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSENFC 388 (388)
Q Consensus 328 ~~~~~~~~~l~d~~~irl~R~~l~k~~~~P~F~~~v~gcfvRv~iG~~~g~~~YR~~~I~~ 388 (388)
-+...|+++++||++|||+|++|++||++|+|+++|.||||||+||+++|+|+||||+|+|
T Consensus 16 ~~~~~~v~~l~di~~irL~Rs~l~~~~~~P~Fe~~V~GcFVRV~ig~~~~~~~YRl~qI~g 76 (153)
T 2bze_A 16 PRGSHMVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITG 76 (153)
T ss_dssp CSSCSBCCCHHHHHHSEECHHHHHHHSSSSSCHHHHTTCEEEEESSTTSSSCCEEEEEEEE
T ss_pred CCCCCCcCCHHHhhheEEEHHHHHHHhcCCchhHheEEEEEEEEeCCCCCCccEEEEEEEe
Confidence 3345689999999999999999999999999999999999999999999999999999985
No 5
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=81.31 E-value=1.9 Score=30.05 Aligned_cols=34 Identities=35% Similarity=0.405 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy14634 236 YAMKKTQLMKERDMAQSKGDDEEASILQRKIDDL 269 (388)
Q Consensus 236 ~a~eK~rL~~ere~A~~~GD~eev~~L~~qL~eL 269 (388)
.+-...-|++++..|-..||.+.|..|+.||+.|
T Consensus 6 ~~d~I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 6 SAANKDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 3456678999999999999999999999999653
No 6
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=73.69 E-value=3.5 Score=37.60 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q psy14634 238 MKKTQLMKERDMAQSKGDDEEASILQRKIDDLEE 271 (388)
Q Consensus 238 ~eK~rL~~ere~A~~~GD~eev~~L~~qL~eLE~ 271 (388)
.+|.+|+.++|.|.+.||.+.-.+|.++|.-||.
T Consensus 149 ~~~~~L~~~ID~ALd~~D~e~F~~Lt~~L~~~~~ 182 (188)
T 3do9_A 149 FRRERLLKQIDEALDKQDKEAFHRLTAELKMLEG 182 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999999999886
No 7
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=63.00 E-value=14 Score=28.04 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q psy14634 236 YAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEER 272 (388)
Q Consensus 236 ~a~eK~rL~~ere~A~~~GD~eev~~L~~qL~eLE~~ 272 (388)
+.-.-..|.++...|...-|.|+|++|..+|..|+..
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3345678999999999999999999999999999874
No 8
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=58.53 E-value=27 Score=24.53 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhhh
Q psy14634 242 QLMKERDMAQSKG-DDEEASILQRKIDDLEERANEL 276 (388)
Q Consensus 242 rL~~ere~A~~~G-D~eev~~L~~qL~eLE~~~~~l 276 (388)
-|..+++..+..| ..++.+.|+.+|+.||..+..+
T Consensus 4 alkselqalkkegfspeelaaleselqalekklaal 39 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQALEKKLAAL 39 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888 8899999999999999977555
No 9
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=57.57 E-value=10 Score=32.35 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhh
Q psy14634 240 KTQLMKERDMAQSKGDDEEASILQRKIDDLEERANEL 276 (388)
Q Consensus 240 K~rL~~ere~A~~~GD~eev~~L~~qL~eLE~~~~~l 276 (388)
=..+.+.++.|..+||.+.+.++.++++.|+...+.+
T Consensus 19 LD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 19 LDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARL 55 (123)
T ss_dssp HHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999865544
No 10
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=53.84 E-value=37 Score=24.83 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhh
Q psy14634 239 KKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANEL 276 (388)
Q Consensus 239 eK~rL~~ere~A~~~GD~eev~~L~~qL~eLE~~~~~l 276 (388)
++.-++.-+..|+..|..|+|+-|+.=|.+|+.....+
T Consensus 10 Q~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~ 47 (51)
T 1yzm_A 10 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 47 (51)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44556677999999999999999999999999865433
No 11
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=50.15 E-value=40 Score=26.11 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhh
Q psy14634 239 KKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANEL 276 (388)
Q Consensus 239 eK~rL~~ere~A~~~GD~eev~~L~~qL~eLE~~~~~l 276 (388)
++.-++.-+..|+..|..|+|+-|+.=|.+|+.....+
T Consensus 28 Q~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 28 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 55666777999999999999999999999999876443
No 12
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=49.54 E-value=46 Score=25.00 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhh
Q psy14634 239 KKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANEL 276 (388)
Q Consensus 239 eK~rL~~ere~A~~~GD~eev~~L~~qL~eLE~~~~~l 276 (388)
++--++.-+..|+..|..++|+-|+.=|.+|......+
T Consensus 17 Qi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 17 QIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 44556677899999999999999999999999876544
No 13
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=48.67 E-value=73 Score=25.49 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhh
Q psy14634 241 TQLMKERDMAQSKGDDEEASILQRKIDDLEERANEL 276 (388)
Q Consensus 241 ~rL~~ere~A~~~GD~eev~~L~~qL~eLE~~~~~l 276 (388)
..|.++|+.|...+|..+++.-+.+|+.--..+.+|
T Consensus 39 ~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l 74 (90)
T 4b6x_A 39 NNLTDELQDAIDEANPAEIANTSQQLRHARADLADL 74 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHH
Confidence 368899999999999999999999998877766555
No 14
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=46.71 E-value=98 Score=30.79 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=35.1
Q ss_pred eeeeeccCCcCCHHHHH---HHHHHHHhcCCCCCCHHHHHHHHHHHHHh----hcCCCCHHHHHHHHHHHhhcC
Q psy14634 164 FRLEFISNQEFTESEFI---RWKDQCMTEGVALPTKDEVERKSKEIQNG----MMYQWKEEDVEQIVREKERFK 230 (388)
Q Consensus 164 f~m~~VSNspfTe~EF~---Rw~~~~~~~~~~lPT~~~V~~K~~dI~k~----~n~~~TeeDI~~mI~~K~~~~ 230 (388)
+.+...+|.+--...+. .....|..-.++.|+.+++..=...+... .+..++++.+..+++.-.+.-
T Consensus 292 v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred EEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 45555555543211111 13334445567788887764444433322 234578888887776655443
No 15
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=43.30 E-value=64 Score=23.26 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q psy14634 239 KKTQLMKERDMAQSKGDDEEASILQRKIDDLEERA 273 (388)
Q Consensus 239 eK~rL~~ere~A~~~GD~eev~~L~~qL~eLE~~~ 273 (388)
+.--+..=++.|+..|..++|.-|+.=|.+|+...
T Consensus 9 Q~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 9 QIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 34455666899999999999999999999998754
No 16
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=41.10 E-value=55 Score=24.85 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q psy14634 175 TESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKE 227 (388)
Q Consensus 175 Te~EF~Rw~~~~~~~~~~lPT~~~V~~K~~dI~k~~n~~~TeeDI~~mI~~K~ 227 (388)
|++|+..=-+.+ ++|-...|..++.. .+|+++|+.||++-.
T Consensus 8 ~~eel~eAFr~f-~dg~G~It~~eLr~-----------~lt~eevd~~i~~~d 48 (75)
T 1h8b_A 8 TAEQVIASFRIL-ASDKPYILAEELRR-----------ELPPDQAQYCIKRMP 48 (75)
T ss_dssp THHHHHHHHHHH-TTSCSSBCHHHHHH-----------HSCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHH-hcCCCCcCHHHHHh-----------cCCHHHHHHHHHhcC
Confidence 778888877777 89989999999977 399999999999854
No 17
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=41.00 E-value=24 Score=24.53 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=13.3
Q ss_pred hhcCCCCHHHHHHHH
Q psy14634 209 GMMYQWKEEDVEQIV 223 (388)
Q Consensus 209 ~~n~~~TeeDI~~mI 223 (388)
-.|++||++|++.|+
T Consensus 18 ~RNrpltDEeLD~mL 32 (39)
T 3lqv_P 18 ERNRPLSDEELDAMF 32 (39)
T ss_dssp HTTCCCCHHHHHHTC
T ss_pred hhcCCCCHHHHHHhC
Confidence 479999999999986
No 18
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=35.08 E-value=66 Score=27.92 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCCHHHHHHHH
Q psy14634 213 QWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQ 263 (388)
Q Consensus 213 ~~TeeDI~~mI~~K~~~~~~~~N~a~eK~rL~~ere~A~~~GD~eev~~L~ 263 (388)
.+|.+-.+++-++=..+. ..+|..+.+.++.|.+.||..+=+++.
T Consensus 5 ~lT~~g~~~L~~EL~~L~------~~~R~~i~~~i~~Ar~~GDlsENaeY~ 49 (158)
T 2p4v_A 5 LVTREGYEKLKQELNYLW------REERPEVTKKVTWAASLGDRSENADYQ 49 (158)
T ss_dssp EECHHHHHHHHHHHHHHH------HTHHHHHHHHHHHHHHHSCTTTCHHHH
T ss_pred cccHHHHHHHHHHHHHHH------hcchHHHHHHHHHHHhCCCcccchhHH
Confidence 356666655555544432 247778888899999999875544443
No 19
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=34.65 E-value=2e+02 Score=24.64 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy14634 192 ALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNY--AMKKTQLMKERDMAQSKGDDEEASILQRKIDDL 269 (388)
Q Consensus 192 ~lPT~~~V~~K~~dI~k~~n~~~TeeDI~~mI~~K~~~~~~~~N~--a~eK~rL~~ere~A~~~GD~eev~~L~~qL~eL 269 (388)
++-|...|..+..+|.+++. ..+++..+.+-+.++...+.-- .-+=..+.++++.++..|......+...++++|
T Consensus 2 ~~~~~~~I~d~A~eL~~aI~---eseeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l 78 (151)
T 2pih_A 2 TLYSKKDIVQQARNLAKMIS---ETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDAL 78 (151)
T ss_dssp CCBCHHHHHHHHHHHHHHHT---TBHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence 35577888888888888874 4577888888877776544322 223345667788888899877788888888888
Q ss_pred HHHHh
Q psy14634 270 EERAN 274 (388)
Q Consensus 270 E~~~~ 274 (388)
...+.
T Consensus 79 ~~~l~ 83 (151)
T 2pih_A 79 QEELE 83 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 20
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.31 E-value=59 Score=26.28 Aligned_cols=62 Identities=11% Similarity=0.363 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q psy14634 203 SKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEE 271 (388)
Q Consensus 203 ~~dI~k~~n~~~TeeDI~~mI~~K~~~~~~~~N~a~eK~rL~~ere~A~~~GD~eev~~L~~qL~eLE~ 271 (388)
+.+++..+ +.+|.++|..+=++++.+.-.++-....+-++.+..+.. .++..|..+++.|-.
T Consensus 8 VreLN~~L-~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE------~e~~~L~~e~~~L~~ 69 (90)
T 2wt7_B 8 VRELNRHL-RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLE------NEKTQLIQQVEQLKQ 69 (90)
T ss_dssp HHHHHTTC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 46777777 799999999998888877633322223333333332222 344445555555544
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.57 E-value=1.6e+02 Score=27.06 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=29.0
Q ss_pred ccccHhhhcceeechhhhhhhhcCCchhhhhccceEEEeecC
Q psy14634 333 YIETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGN 374 (388)
Q Consensus 333 ~~~~l~d~~~irl~R~~l~k~~~~P~F~~~v~gcfvRv~iG~ 374 (388)
|+.-|..+++||=.+.- ....|--..+..|||+.|..+.
T Consensus 174 ~~~lL~~Yerir~~~~g---~avv~v~~~~C~GC~~~lppq~ 212 (256)
T 3na7_A 174 EPKIYSFYERIRRWAKN---TSIVTIKKQACGGCFIRLNDKI 212 (256)
T ss_dssp CHHHHHHHHHHHHHHGG---GSEEECBTTBCTTTCCBCCHHH
T ss_pred CHHHHHHHHHHHHhCCC---ceEEEeeCCccCCCCeeeCHHH
Confidence 56788888888754433 4466777889999999887554
No 22
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=30.46 E-value=76 Score=25.35 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.1
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q psy14634 171 NQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMM 211 (388)
Q Consensus 171 NspfTe~EF~Rw~~~~~~~~~~lPT~~~V~~K~~dI~k~~n 211 (388)
..|-.|.....|...|...|++ ||-..|..|...|...+.
T Consensus 73 ~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g 112 (131)
T 1hlv_A 73 PYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELG 112 (131)
T ss_dssp TTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhC
Confidence 3344588999999999999997 899999999999987763
No 23
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=27.69 E-value=1.9e+02 Score=21.54 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=49.8
Q ss_pred ccCCcCCHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHhh----cCCCCHHHHHHHHHHHhhcCCCCCchhHHHHH
Q psy14634 169 ISNQEFTESE-FIRWKDQCMTEGVALPTKDEVERKSKE-IQNGM----MYQWKEEDVEQIVREKERFKPTPYNYAMKKTQ 242 (388)
Q Consensus 169 VSNspfTe~E-F~Rw~~~~~~~~~~lPT~~~V~~K~~d-I~k~~----n~~~TeeDI~~mI~~K~~~~~~~~N~a~eK~r 242 (388)
++++..|=.| ++.|...+...+.+.-|......-... |...+ =..+|..||...+..-..-+.++..+..-...
T Consensus 2 ~~~~~~t~~~~~~~~l~~~~~~~~~~~T~~~y~~~~~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~~s~~t~~~~~~~ 81 (117)
T 2kkp_A 2 IEPSKITVEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVV 81 (117)
T ss_dssp CCSCCSCHHHHHHHHHHHHTSCCCSCCCCSHHHHHHHHHHCCCCCTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHhccccCceEHHHCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455566555 477988775556666676555443332 32222 23578899999887754322233333345556
Q ss_pred HHHHHHHHHhCC
Q psy14634 243 LMKERDMAQSKG 254 (388)
Q Consensus 243 L~~ere~A~~~G 254 (388)
|..-...|...|
T Consensus 82 l~~~~~~A~~~~ 93 (117)
T 2kkp_A 82 LHEAMSQARESG 93 (117)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHCC
Confidence 666677777665
No 24
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=27.67 E-value=72 Score=30.07 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=38.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHhh--cCC-CCCch-hHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHH
Q psy14634 204 KEIQNGMMYQWKEEDVEQIVREKER--FKP-TPYNY-AMKKTQLMKERDMAQS------KGDDEEASILQRKIDDLEERA 273 (388)
Q Consensus 204 ~dI~k~~n~~~TeeDI~~mI~~K~~--~~~-~~~N~-a~eK~rL~~ere~A~~------~GD~eev~~L~~qL~eLE~~~ 273 (388)
+.|++++..-..+.+..++++.-.- |.. .+..+ .++...+.+++..++. .++.+.+++|+++|++|+.+.
T Consensus 228 ~~l~~aL~~~~~d~~~~~~l~~~g~~gf~~~~~~dy~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (321)
T 3p7i_A 228 DKIYDFFMNYGKTPEEKAVLERLGWAPFRASSDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLN 307 (321)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHTEEEEEECCGGGGHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCcCCeeeCCHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555554321 111 22222 3566667777777776 344456677777777777665
Q ss_pred hhhh
Q psy14634 274 NELD 277 (388)
Q Consensus 274 ~~l~ 277 (388)
..++
T Consensus 308 ~~~~ 311 (321)
T 3p7i_A 308 NALS 311 (321)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 25
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=26.98 E-value=1.8e+02 Score=23.64 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCH-------HHHHHHHHHHhh
Q psy14634 175 TESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKE-------EDVEQIVREKER 228 (388)
Q Consensus 175 Te~EF~Rw~~~~~~~~~~lPT~~~V~~K~~dI~k~~n~~~Te-------eDI~~mI~~K~~ 228 (388)
+=.|.++|+..+. .+|.+|+.+|+.. .|+| +||++.+++|..
T Consensus 22 ~l~~AekWR~qvi---------kEIs~Kv~~Iqn~---~L~E~~IRdLNDEINkL~rEK~~ 70 (92)
T 1x4t_A 22 ELPKAEKWRRQII---------GEISKKVAQIQNA---GLGEFRIRDLNDEINKLLREKGH 70 (92)
T ss_dssp CHHHHHHHHHHHH---------HHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---------HHHHHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999886 5899999998865 3443 678888888764
No 26
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=26.26 E-value=76 Score=29.55 Aligned_cols=71 Identities=11% Similarity=0.266 Sum_probs=39.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHhh--cCC-CCCch-hHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHH
Q psy14634 204 KEIQNGMMYQWKEEDVEQIVREKER--FKP-TPYNY-AMKKTQLMKERDMAQS------KGDDEEASILQRKIDDLEERA 273 (388)
Q Consensus 204 ~dI~k~~n~~~TeeDI~~mI~~K~~--~~~-~~~N~-a~eK~rL~~ere~A~~------~GD~eev~~L~~qL~eLE~~~ 273 (388)
+.|++++..-..+.+..++++.-.- +.+ .+..+ .++...|-+++..++. .++...+++|+++|++|+.+.
T Consensus 219 ~~l~~al~~~~~d~~~~~~l~~~g~~gf~~~~~~~y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (310)
T 3n5l_A 219 NKLRDFFFKYGANAEQKKVLADLQWSKFQASDDDQLLPIRQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRM 298 (310)
T ss_dssp HHHHHHHHHCCCSHHHHHHHHHTTEEEEEECCGGGGHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHhcCccCceeCCHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455566666654321 111 22222 3677777788887777 444456667777777776654
Q ss_pred h
Q psy14634 274 N 274 (388)
Q Consensus 274 ~ 274 (388)
.
T Consensus 299 ~ 299 (310)
T 3n5l_A 299 A 299 (310)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.15 E-value=19 Score=25.98 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=11.8
Q ss_pred hcCCCCHHHHHHHHH
Q psy14634 210 MMYQWKEEDVEQIVR 224 (388)
Q Consensus 210 ~n~~~TeeDI~~mI~ 224 (388)
.|++|||||++.|+=
T Consensus 18 rnrpltDEeLD~~LP 32 (47)
T 2fho_A 18 RNRPLSDEELDAMFP 32 (47)
T ss_dssp CCCCSCTTHHHHHSC
T ss_pred ccCCCCHHHHHHhCC
Confidence 477888888888874
No 28
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=23.64 E-value=1.5e+02 Score=31.01 Aligned_cols=16 Identities=19% Similarity=0.109 Sum_probs=10.1
Q ss_pred hcCCCCHHHHHHHHHH
Q psy14634 210 MMYQWKEEDVEQIVRE 225 (388)
Q Consensus 210 ~n~~~TeeDI~~mI~~ 225 (388)
+...+|.+++.+.+++
T Consensus 287 vs~ilt~~elkqrqee 302 (551)
T 2b5u_A 287 VSDVLSPDQVKQRQDE 302 (551)
T ss_dssp EEECCCHHHHHHHHHH
T ss_pred EeecCCHHHHHHHHHH
Confidence 4566777777666654
No 29
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.18 E-value=1.2e+02 Score=31.18 Aligned_cols=63 Identities=6% Similarity=0.038 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHH-hhcCCCC--HHHHHHHHHH---HhhcCCCCCchhHHHHHHHHHHHHHHhCC
Q psy14634 192 ALPTKDEVERKSKEIQN-GMMYQWK--EEDVEQIVRE---KERFKPTPYNYAMKKTQLMKERDMAQSKG 254 (388)
Q Consensus 192 ~lPT~~~V~~K~~dI~k-~~n~~~T--eeDI~~mI~~---K~~~~~~~~N~a~eK~rL~~ere~A~~~G 254 (388)
++.....|.+-.+.+.+ +..+.+. .++|+++++- ++.+...-.++-.++..+.+++..++..|
T Consensus 39 pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~ 107 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ 107 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45555666555555533 3344443 2345555432 33333222233345555556665555444
No 30
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.75 E-value=25 Score=26.25 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q psy14634 197 DEVERKSKEIQNGMMYQWKEEDVEQIVREKE 227 (388)
Q Consensus 197 ~~V~~K~~dI~k~~n~~~TeeDI~~mI~~K~ 227 (388)
-+|+.+..++..++.+-+-.+||+++++.+.
T Consensus 6 TeVEnRl~qLE~ll~~lfP~~d~D~ll~~~~ 36 (57)
T 1hbw_A 6 TEVESRLERLEQLFLLIFPREDLDMILKMDS 36 (57)
T ss_dssp HHHHHHHHHHHHHCSSSSSSSCCCHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHCCcccHHHHHcCCC
Confidence 5799999999999999999999999998874
No 31
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=22.26 E-value=3.6e+02 Score=24.21 Aligned_cols=97 Identities=7% Similarity=0.101 Sum_probs=51.2
Q ss_pred eeeeccCCcCCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q psy14634 165 RLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEV-ERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQL 243 (388)
Q Consensus 165 ~m~~VSNspfTe~EF~Rw~~~~~~~~~~lPT~~~V-~~K~~dI~k~~n~~~TeeDI~~mI~~K~~~~~~~~N~a~eK~rL 243 (388)
.+.+-+++.++++|.++++........ .+.. .++.+..+.+-++.| ++...|..-.. .. ..-+|..|
T Consensus 107 ~i~i~~~~~Ls~eei~~~~~~~~~~~~----~D~~~~e~~e~kn~le~~i~---~~~~~l~~~~~--~~---~~~~k~~i 174 (227)
T 1u00_A 107 SIQVKPSYGLTDSEIASMIKDSMSYAE----QDVKARMLAEQKVEAARVLE---SLHGALAADAA--LL---SAAERQVI 174 (227)
T ss_dssp EEEECCCSCCCHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHGG--GS---CHHHHHHH
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhhhc----ccHHHHHHHHHHHHHHHHHH---HHHHHHHhhhc--cC---CHHHHHHH
Confidence 444445577999999999887765432 1221 122222223323333 22233322100 11 13577778
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q psy14634 244 MKERDMAQSKGDDEEASILQRKIDDLEERA 273 (388)
Q Consensus 244 ~~ere~A~~~GD~eev~~L~~qL~eLE~~~ 273 (388)
...++.++..-+.+..+.+.+++++|+...
T Consensus 175 ~~~l~~~~~wl~~~d~~~~~~~~~~L~~~~ 204 (227)
T 1u00_A 175 DDAAAHLSEVAQGDDVDAIEQAIKNVDKQT 204 (227)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 777776664432224667777777777644
No 32
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=22.15 E-value=97 Score=25.18 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHHHHhh
Q psy14634 173 EFTESEFIRWKDQCM----TEGVALPTKDEVERKSKEIQNGM 210 (388)
Q Consensus 173 pfTe~EF~Rw~~~~~----~~~~~lPT~~~V~~K~~dI~k~~ 210 (388)
+||+++|++|+..+. ..+++.+....+......+...+
T Consensus 79 ~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~~~a~~m 120 (128)
T 2bkm_A 79 EITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHM 120 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 699999999987654 44666666777766666666544
No 33
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=20.71 E-value=1.6e+02 Score=23.51 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=30.9
Q ss_pred cCCcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHhhcC
Q psy14634 170 SNQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQ---WKEEDVEQIVREKERFK 230 (388)
Q Consensus 170 SNspfTe~EF~Rw~~~~~~~~~~lPT~~~V~~K~~dI~k~~n~~---~TeeDI~~mI~~K~~~~ 230 (388)
|.+++||+|..+|+. .++-|-.|+- .++..+- -++++++.+-+-=++.+
T Consensus 15 ~~~~iTEe~VRryL~------rkPmTT~dLl------~KFK~r~~~~~~~e~v~~~a~ILKki~ 66 (82)
T 1nha_A 15 GDVQVTEDAVRRYLT------RKPMTTKDLL------KKFQTKKTGLSSEQTVNVLAQILKRLN 66 (82)
T ss_dssp -CCCCCHHHHHHHHH------HSCBCHHHHH------HHTTSSCCSSCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHH------hCCccHHHHH------HHHHHhcccCCCHHHHHHHHHHHHHcC
Confidence 789999999999998 2455655553 3444444 56666666555444444
No 34
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.70 E-value=1.5e+02 Score=26.42 Aligned_cols=19 Identities=11% Similarity=0.401 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy14634 255 DDEEASILQRKIDDLEERA 273 (388)
Q Consensus 255 D~eev~~L~~qL~eLE~~~ 273 (388)
|.++|..|.+++.+|...+
T Consensus 111 DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 111 DTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654
No 35
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=20.42 E-value=1.9e+02 Score=24.68 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCCHH
Q psy14634 213 QWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDE 257 (388)
Q Consensus 213 ~~TeeDI~~mI~~K~~~~~~~~N~a~eK~rL~~ere~A~~~GD~e 257 (388)
.+|.+..+++-++=... ..++..+.+.++.|.+.||..
T Consensus 6 ~~T~~g~~~L~~el~~~-------~~~r~~~~~~i~~A~~~GDls 43 (156)
T 2f23_A 6 KLTKAGYERLMQQLERE-------RERLQEATKILQELMESSDDY 43 (156)
T ss_dssp EECHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCSCCS
T ss_pred ccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCch
Confidence 36776666655543221 247888889999999999874
No 36
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=20.17 E-value=2e+02 Score=22.84 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q psy14634 213 QWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERA 273 (388)
Q Consensus 213 ~~TeeDI~~mI~~K~~~~~~~~N~a~eK~rL~~ere~A~~~GD~eev~~L~~qL~eLE~~~ 273 (388)
..|.+.|+..++.=+... .--+...+..++..+...||.+++.++..+|.+|...+
T Consensus 85 ~~~~~~i~~y~~~v~~~~-----~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 85 DVSEQELEDYIRHVLNRP-----KWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp SCCHHHHHHHHHHHHTHH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 677777777665533211 11244556777888888999999998888888877643
Done!