BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy14634
MENGFYLENWSTLETFVFQKSKQIFPMGGLFLIPSAFQIVREKERFKPTPYNYAMKKTQL
MKERDMAQSKIGESQPFRDGNLSSLPRAGIEPEIVEVVYKKDLISSAMFYGSVCDLTSWH
IFSSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFI
RWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKK
TQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVE
EAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEYIETKEELNRIRLSRFKMEKLVHLPIFG
QIVIGCFVRIGIGNNTGIPLYRVSENFC

High Scoring Gene Products

Symbol, full name Information P value
Rtf1 protein from Drosophila melanogaster 3.4e-49
RTF1
RNA polymerase-associated protein RTF1 homolog
protein from Homo sapiens 7.7e-48
RTF1
RNA polymerase-associated protein RTF1 homolog
protein from Pongo abelii 7.7e-48
RTF1
Uncharacterized protein
protein from Canis lupus familiaris 8.3e-48
Rtf1
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
protein from Mus musculus 8.5e-48
F1SSV6
Uncharacterized protein
protein from Sus scrofa 2.6e-47
RTF1
Uncharacterized protein
protein from Bos taurus 3.3e-47
I3LJZ5
Uncharacterized protein
protein from Sus scrofa 3.4e-47
rtf1
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
gene_product from Danio rerio 5.3e-47
RTF1
RNA polymerase-associated protein RTF1 homolog
protein from Homo sapiens 2.5e-42
F25B3.6 gene from Caenorhabditis elegans 4.9e-28
CG31702 protein from Drosophila melanogaster 4.6e-18
CG31703 protein from Drosophila melanogaster 6.1e-18
VIP5
vernalization independence 5
protein from Arabidopsis thaliana 1.6e-09
DDB_G0286523 gene from Dictyostelium discoideum 2.0e-08
CG12498 protein from Drosophila melanogaster 8.3e-08
RTF1
Subunit of RNAPII-associated chromatin remodeling Paf1 complex
gene from Saccharomyces cerevisiae 4.7e-05

The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy14634
        (388 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0034722 - symbol:Rtf1 "Rtf1" species:7227 "Drosoph...   497  3.4e-49   2
UNIPROTKB|Q92541 - symbol:RTF1 "RNA polymerase-associated...   500  7.7e-48   1
UNIPROTKB|Q5RAD5 - symbol:RTF1 "RNA polymerase-associated...   500  7.7e-48   1
UNIPROTKB|E2RPD2 - symbol:RTF1 "Uncharacterized protein" ...   500  8.3e-48   1
MGI|MGI:1309480 - symbol:Rtf1 "Rtf1, Paf1/RNA polymerase ...   500  8.5e-48   1
UNIPROTKB|D4A6Z3 - symbol:Rtf1 "Protein Rtf1" species:101...   499  1.1e-47   1
UNIPROTKB|F1NY87 - symbol:RTF1 "Uncharacterized protein" ...   495  2.6e-47   1
UNIPROTKB|Q5ZKE3 - symbol:RTF1 "Uncharacterized protein" ...   495  2.6e-47   1
UNIPROTKB|F1SSV6 - symbol:RTF1 "Uncharacterized protein" ...   495  2.6e-47   1
UNIPROTKB|F1N6E9 - symbol:RTF1 "Uncharacterized protein" ...   495  3.3e-47   1
UNIPROTKB|I3LJZ5 - symbol:RTF1 "Uncharacterized protein" ...   495  3.4e-47   1
ZFIN|ZDB-GENE-030131-6778 - symbol:rtf1 "Rtf1, Paf1/RNA p...   495  5.3e-47   1
UNIPROTKB|H0YKX1 - symbol:RTF1 "RNA polymerase-associated...   448  2.5e-42   1
WB|WBGene00009103 - symbol:F25B3.6 species:6239 "Caenorha...   320  4.9e-28   1
FB|FBgn0051702 - symbol:CG31702 species:7227 "Drosophila ...   240  4.6e-18   1
FB|FBgn0051703 - symbol:CG31703 species:7227 "Drosophila ...   239  6.1e-18   1
POMBASE|SPBC651.09c - symbol:SPBC651.09c "RNA polymerase ...   215  8.1e-15   1
TAIR|locus:2205996 - symbol:VIP5 "vernalization independe...   169  1.6e-09   1
ASPGD|ASPL0000075787 - symbol:rtfA species:162425 "Emeric...   162  8.9e-09   1
DICTYBASE|DDB_G0286523 - symbol:DDB_G0286523 species:4468...   159  2.0e-08   1
FB|FBgn0040356 - symbol:CG12498 species:7227 "Drosophila ...   146  8.3e-08   1
SGD|S000003213 - symbol:RTF1 "Subunit of RNAPII-associate...   128  4.7e-05   1


>FB|FBgn0034722 [details] [associations]
            symbol:Rtf1 "Rtf1" species:7227 "Drosophila melanogaster"
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0035327 "transcriptionally active chromatin"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0051571 "positive regulation of
            histone H3-K4 methylation" evidence=IMP] [GO:0045747 "positive
            regulation of Notch signaling pathway" evidence=IGI]
            InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
            SMART:SM00719 EMBL:AE013599 GO:GO:0005634 GO:GO:0045893
            GO:GO:0005654 GO:GO:0003677 GO:GO:0007219 GO:GO:0006352
            GO:GO:0045747 GO:GO:0035327 GO:GO:0042800 GO:GO:0051571
            RefSeq:NP_611665.1 UniGene:Dm.734 HSSP:Q96BX6
            ProteinModelPortal:Q9W261 SMR:Q9W261 IntAct:Q9W261
            MINT:MINT-1547542 STRING:Q9W261 PaxDb:Q9W261 PRIDE:Q9W261
            EnsemblMetazoa:FBtr0071820 GeneID:37554 KEGG:dme:Dmel_CG10955
            UCSC:CG10955-RA CTD:23168 FlyBase:FBgn0034722 eggNOG:COG5296
            GeneTree:ENSGT00390000012493 InParanoid:Q9W261 KO:K15178
            OMA:PTNYAMK OrthoDB:EOG45QFVK PhylomeDB:Q9W261 ChiTaRS:RTF1
            GenomeRNAi:37554 NextBio:804255 Bgee:Q9W261 GermOnline:CG10955
            Uniprot:Q9W261
        Length = 775

 Score = 497 (180.0 bits), Expect = 3.4e-49, Sum P(2) = 3.4e-49
 Identities = 99/179 (55%), Positives = 126/179 (70%)

Query:   129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
             + EI GV ETGKIYSLG TRTN+GL+L+HG  ERVFRLEFISNQEFTE+EF +W + C  
Sbjct:   477 VAEIVGVVETGKIYSLGTTRTNRGLRLKHGTQERVFRLEFISNQEFTENEFNKWNEVCQQ 536

Query:   189 EGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERD 248
               V +PT D +  K  +I+  + Y++K+EDV++IV EK RF+  P NYAMKKT LMKERD
Sbjct:   537 SHVQMPTIDLIAIKQNDIKKALNYEFKDEDVDKIVEEKNRFRNRPTNYAMKKTCLMKERD 596

Query:   249 MAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEEAEKAIM 307
              A  +GD + A  L ++ID+LE RA+ELDK R+ T             KNVE+AEKAI+
Sbjct:   597 AAMLRGDYDIAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRKKNVEDAEKAIL 655

 Score = 193 (73.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 55/168 (32%), Positives = 83/168 (49%)

Query:   224 REKERFKPTPYNYAMKKTQ----LMKERDMAQSKGDDEEASILQRKI-DDLEERANELDK 278
             R KER K    N    K      L+K +   ++K ++EEA  +  K  DD +E  + +  
Sbjct:   312 RSKERKKNVEANKTDDKRSNAMALLKAKREGKAKREEEEAKRMAEKDRDDDKEELDSVSG 371

Query:   279 ARTSTXXXXXXXXXXXX-XKNVEEAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEYIETK 337
              +++                + +E EK          S  S  S     + +   +I T+
Sbjct:   372 CKSAVKLKASEIYSDDSGSSDWDEEEKPAGKRSRSNSSKASSESEDEEKAPQRPVFITTR 431

Query:   338 EELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
             E+LN++RLSR+KME+ V+LPIF   V+ CFVRI IGNN   P+YRV+E
Sbjct:   432 EDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNNGQKPVYRVAE 479

 Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query:   158 GNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEE 217
             G+ E   RL  +S +E  E+E  +  +Q   E   + T+ E+ERK K  + G   Q K +
Sbjct:   166 GDDEDRRRLNGLSEKE-RETEIYKRIEQ--RE--IMRTRWEIERKLKLARRGEKNQEKSK 220

Query:   218 DV-EQIVREKER 228
             +  E+  ++KE+
Sbjct:   221 NKGERAKKKKEK 232

 Score = 42 (19.8 bits), Expect = 3.4e-49, Sum P(2) = 3.4e-49
 Identities = 23/124 (18%), Positives = 48/124 (38%)

Query:    14 ETFVFQKSKQIFPMGGLFLIPSAFQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKIGE 73
             ET ++++ +Q   M   + I    ++ R  E+ +    N   +  +  ++R+    K  E
Sbjct:   183 ETEIYKRIEQREIMRTRWEIERKLKLARRGEKNQEKSKNKGERAKKKKEKREKKARKARE 242

Query:    74 SQPFRDGNLSSLPRAGIEPEIVEVVYKKDLISSAMFYGSVCDLTSWHIFSSHPQEIGEIS 133
             +Q       S+     +EP+    V     +S+          TS  + S  P +    +
Sbjct:   243 AQAPLPTQASTSTLLDVEPKPSNEVRSASPLSTPALNRDAAS-TSAAVASIMPDDAASSA 301

Query:   134 GVCE 137
             GV +
Sbjct:   302 GVSD 305


>UNIPROTKB|Q92541 [details] [associations]
            symbol:RTF1 "RNA polymerase-associated protein RTF1
            homolog" species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0016055 "Wnt receptor
            signaling pathway" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
            methylation" evidence=IEA] [GO:0080182 "histone H3-K4
            trimethylation" evidence=IEA] [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0016593 "Cdc73/Paf1 complex"
            evidence=IDA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0019827 "stem cell
            maintenance" evidence=IDA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0001711 "endodermal cell fate commitment" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR004343
            InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360 SMART:SM00719
            GO:GO:0005730 GO:GO:0016055 GO:GO:0045944 GO:GO:0006352
            GO:GO:0000122 GO:GO:0003697 GO:GO:0019827 GO:GO:0051571
            GO:GO:0032968 GO:GO:0080182 GO:GO:0016593 GO:GO:0001711
            EMBL:AC087721 CTD:23168 eggNOG:COG5296 KO:K15178 ChiTaRS:RTF1
            EMBL:D87440 EMBL:BC015052 IPI:IPI00303832 RefSeq:NP_055953.3
            UniGene:Hs.511096 PDB:2BZE PDB:2DB9 PDB:3U1U PDBsum:2BZE
            PDBsum:2DB9 PDBsum:3U1U ProteinModelPortal:Q92541 SMR:Q92541
            IntAct:Q92541 STRING:Q92541 PhosphoSite:Q92541 DMDM:118595726
            PaxDb:Q92541 PRIDE:Q92541 Ensembl:ENST00000389629 GeneID:23168
            KEGG:hsa:23168 UCSC:uc001zny.3 GeneCards:GC15P041709
            H-InvDB:HIX0012153 HGNC:HGNC:28996 HPA:HPA006714 MIM:611633
            neXtProt:NX_Q92541 PharmGKB:PA134961778 HOGENOM:HOG000231764
            HOVERGEN:HBG057331 InParanoid:Q92541 OMA:CKPTMVS OrthoDB:EOG4X97GV
            EvolutionaryTrace:Q92541 GenomeRNAi:23168 NextBio:44567
            PMAP-CutDB:Q92541 Bgee:Q92541 CleanEx:HS_RTF1 Genevestigator:Q92541
            GermOnline:ENSG00000137815 Uniprot:Q92541
        Length = 710

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/186 (50%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++
Sbjct:   395 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMK 454

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   455 WKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 514

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   515 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 574

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   575 SEKALV 580

 Score = 182 (69.1 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 70/271 (25%), Positives = 120/271 (44%)

Query:   123 SSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEF--ISNQEFTESEFI 180
             SS P+E GE+S         S     +++  +   G  E +   E      ++ TE E  
Sbjct:   147 SSAPEE-GEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKE-- 203

Query:   181 RWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKK 240
               ++Q +   +    K EV ++  EI+  +    K+E  E+  +++E  +       +++
Sbjct:   204 --REQELFNRIE---KREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQ-IQE 257

Query:   241 TQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXX------XXXXXX 294
             +Q+       +SK D++    L +K   +EE   E +K +  T                 
Sbjct:   258 SQVTSHNKERRSKRDEK----LDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYS 313

Query:   295 XXKNVEEAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEYIETKEELNRIRLSRFKMEKLV 354
               +  EE +K+   S     +  S    +        + +   EELNR+RLSR K+E+  
Sbjct:   314 DDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWC 373

Query:   355 HLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
             H+P F + V GCFVRIGIGN+   P+YRV+E
Sbjct:   374 HMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 404


>UNIPROTKB|Q5RAD5 [details] [associations]
            symbol:RTF1 "RNA polymerase-associated protein RTF1
            homolog" species:9601 "Pongo abelii" [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001711 "endodermal cell fate commitment"
            evidence=ISS] [GO:0003697 "single-stranded DNA binding"
            evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
            [GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
            PROSITE:PS51360 SMART:SM00719 GO:GO:0016055 GO:GO:0045944
            GO:GO:0006352 GO:GO:0000122 GO:GO:0016570 GO:GO:0003697
            GO:GO:0019827 GO:GO:0032968 GO:GO:0016593 GO:GO:0001711 HSSP:Q96BX6
            HOVERGEN:HBG057331 EMBL:CR859083 UniGene:Pab.3521 PRIDE:Q5RAD5
            InParanoid:Q5RAD5 Uniprot:Q5RAD5
        Length = 665

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/186 (50%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++
Sbjct:   390 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMK 449

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   450 WKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 509

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   510 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 569

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   570 SEKALV 575

 Score = 181 (68.8 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 70/271 (25%), Positives = 120/271 (44%)

Query:   123 SSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEF--ISNQEFTESEFI 180
             SS P+E GE+S         S     +++  +   G  E +   E      ++ TE E  
Sbjct:   142 SSAPEE-GEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKE-- 198

Query:   181 RWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKK 240
               ++Q +   +    K EV ++  EI+  +    K+E  E+  +++E  +       +++
Sbjct:   199 --REQELFNRIE---KREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQ-IQE 252

Query:   241 TQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXX------XXXXXX 294
             +Q+       +SK D++    L +K   +EE   E +K +  T                 
Sbjct:   253 SQVTSHNKERRSKRDEK----LDKKSQAMEELKAEREKRKNRTVELLAKKQPLKTSEVYS 308

Query:   295 XXKNVEEAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEYIETKEELNRIRLSRFKMEKLV 354
               +  EE +K+   S     +  S    +        + +   EELNR+RLSR K+E+  
Sbjct:   309 DDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWC 368

Query:   355 HLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
             H+P F + V GCFVRIGIGN+   P+YRV+E
Sbjct:   369 HMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 399


>UNIPROTKB|E2RPD2 [details] [associations]
            symbol:RTF1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0080182 "histone H3-K4 trimethylation"
            evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
            methylation" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0032968 "positive regulation of transcription elongation from
            RNA polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
            maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
            cell fate commitment" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
            PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
            GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
            GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
            GO:GO:0001711 CTD:23168 GeneTree:ENSGT00390000012493 KO:K15178
            OMA:CKPTMVS EMBL:AAEX03016077 EMBL:AAEX03016074 EMBL:AAEX03016075
            EMBL:AAEX03016076 RefSeq:XP_544630.2 Ensembl:ENSCAFT00000015168
            GeneID:487506 KEGG:cfa:487506 NextBio:20861089 Uniprot:E2RPD2
        Length = 714

 Score = 500 (181.1 bits), Expect = 8.3e-48, P = 8.3e-48
 Identities = 93/186 (50%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++
Sbjct:   399 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMK 458

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   459 WKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 518

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   519 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 578

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   579 SEKALV 584

 Score = 185 (70.2 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 71/271 (26%), Positives = 120/271 (44%)

Query:   123 SSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEF--ISNQEFTESEFI 180
             SS P+E GE+S         S     +++  +   G  E +   E      ++ TE E  
Sbjct:   151 SSAPEE-GEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKE-- 207

Query:   181 RWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKK 240
               ++Q +   +    K EV +K  EI+  +    K+E  E+  +++E  +       +++
Sbjct:   208 --REQELFNRIE---KREVLKKRFEIRKKLKTAKKKEKKEKKKKQEEEQEKKKLTQ-IQE 261

Query:   241 TQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXX------XXXXXX 294
             +Q+       +SK D++    L +K   +EE   E +K +  T                 
Sbjct:   262 SQVTSHNKERRSKRDEK----LDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYS 317

Query:   295 XXKNVEEAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEYIETKEELNRIRLSRFKMEKLV 354
               +  EE +K+   S     +  S    +        + +   EELNR+RLSR K+E+  
Sbjct:   318 DDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWC 377

Query:   355 HLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
             H+P F + V GCFVRIGIGN+   P+YRV+E
Sbjct:   378 HMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 408


>MGI|MGI:1309480 [details] [associations]
            symbol:Rtf1 "Rtf1, Paf1/RNA polymerase II complex component,
            homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IMP] [GO:0001711 "endodermal cell fate
            commitment" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] [GO:0016570 "histone modification" evidence=IEA]
            [GO:0016593 "Cdc73/Paf1 complex" evidence=ISO] [GO:0019827 "stem
            cell maintenance" evidence=ISO;IMP] [GO:0032968 "positive
            regulation of transcription elongation from RNA polymerase II
            promoter" evidence=ISO] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0051571 "positive regulation of histone H3-K4 methylation"
            evidence=IMP] [GO:0080182 "histone H3-K4 trimethylation"
            evidence=IMP] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
            PROSITE:PS51360 SMART:SM00719 MGI:MGI:1309480 GO:GO:0005730
            GO:GO:0016055 GO:GO:0045944 GO:GO:0006352 GO:GO:0000122
            GO:GO:0003697 GO:GO:0019827 GO:GO:0051571 GO:GO:0032968
            GO:GO:0080182 GO:GO:0016593 GO:GO:0001711 EMBL:AL844536 CTD:23168
            eggNOG:COG5296 GeneTree:ENSGT00390000012493 KO:K15178 ChiTaRS:RTF1
            HOGENOM:HOG000231764 HOVERGEN:HBG057331 OMA:CKPTMVS
            OrthoDB:EOG4X97GV EMBL:BC117848 EMBL:BC117849 IPI:IPI00757677
            RefSeq:NP_084388.2 UniGene:Mm.33437 ProteinModelPortal:A2AQ19
            SMR:A2AQ19 STRING:A2AQ19 PhosphoSite:A2AQ19 PaxDb:A2AQ19
            PRIDE:A2AQ19 Ensembl:ENSMUST00000028767 GeneID:76246 KEGG:mmu:76246
            UCSC:uc008lue.2 InParanoid:Q08EC5 NextBio:344845 Bgee:A2AQ19
            Genevestigator:A2AQ19 Uniprot:A2AQ19
        Length = 715

 Score = 500 (181.1 bits), Expect = 8.5e-48, P = 8.5e-48
 Identities = 93/186 (50%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++
Sbjct:   400 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMK 459

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   460 WKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 519

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   520 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 579

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   580 SEKALV 585

 Score = 180 (68.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 71/271 (26%), Positives = 121/271 (44%)

Query:   123 SSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEF--ISNQEFTESEFI 180
             SS P+E GE+S    +    S     +++  +   G  E +   E      ++ TE E  
Sbjct:   152 SSAPEE-GEVSDSESSSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKE-- 208

Query:   181 RWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKK 240
               ++Q +   +    K EV ++  EI+  +    K+E  E+  +++E  +       +++
Sbjct:   209 --REQELFNRIE---KREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQ-IQE 262

Query:   241 TQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVE 300
             +Q+       +SK D++    L +K   +EE   E +K +  T             +   
Sbjct:   263 SQVTSHNKERRSKRDEK----LDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYS 318

Query:   301 EAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEY------IETKEELNRIRLSRFKMEKLV 354
             + E+          S  S R+  S    +  E       +   EELNR+RLSR K+E+  
Sbjct:   319 DDEEEEDDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWC 378

Query:   355 HLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
             H+P F + V GCFVRIGIGN+   P+YRV+E
Sbjct:   379 HMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 409


>UNIPROTKB|D4A6Z3 [details] [associations]
            symbol:Rtf1 "Protein Rtf1" species:10116 "Rattus
            norvegicus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IEA] [GO:0001711 "endodermal
            cell fate commitment" evidence=IEA] [GO:0003697 "single-stranded
            DNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA] [GO:0019827 "stem
            cell maintenance" evidence=IEA] [GO:0032968 "positive regulation of
            transcription elongation from RNA polymerase II promoter"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0051571
            "positive regulation of histone H3-K4 methylation" evidence=IEA]
            [GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
            InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
            SMART:SM00719 GO:GO:0005634 GO:GO:0003677 GO:GO:0006352
            GO:GO:0016570 IPI:IPI00947915 Ensembl:ENSRNOT00000066905
            RGD:1310654 ArrayExpress:D4A6Z3 Uniprot:D4A6Z3
        Length = 715

 Score = 499 (180.7 bits), Expect = 1.1e-47, P = 1.1e-47
 Identities = 93/186 (50%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++
Sbjct:   400 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMK 459

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   460 WKEAMFSAGMQLPTLDEINKKEFSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 519

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   520 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 579

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   580 SEKALV 585

 Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:   196 KDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGD 255
             K EV ++  EI+  +    K+E  E+  +++E  +       ++++Q+       +SK D
Sbjct:   219 KREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQ-IQESQVTSHNKERRSKRD 277

Query:   256 DEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEEAEKAIMVSCCCCCS 315
             ++    L +K   +EE   E +K +  T             +   + E+          S
Sbjct:   278 EK----LDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEDDDKSSEKS 333

Query:   316 GFSYRSVKSSASRKVIEY------IETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVR 369
               S R+  S    +  E       +   EELNR+RLSR K+E+  H+P F + V GCFVR
Sbjct:   334 DRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVR 393

Query:   370 IGIGNNTGIPLYRVSE 385
             IGIGN+   P+YRV+E
Sbjct:   394 IGIGNHNSKPVYRVAE 409


>UNIPROTKB|F1NY87 [details] [associations]
            symbol:RTF1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0001711
            "endodermal cell fate commitment" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
            [GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
            methylation" evidence=IEA] [GO:0080182 "histone H3-K4
            trimethylation" evidence=IEA] InterPro:IPR004343 InterPro:IPR018144
            Pfam:PF03126 PROSITE:PS51360 SMART:SM00719 GO:GO:0005730
            GO:GO:0045944 GO:GO:0006352 GO:GO:0000122 GO:GO:0003697
            GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
            GeneTree:ENSGT00390000012493 OMA:CKPTMVS EMBL:AADN02033532
            EMBL:AC145946 IPI:IPI00591962 Ensembl:ENSGALT00000013996
            ArrayExpress:F1NY87 Uniprot:F1NY87
        Length = 701

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHG+ +RVFRLEF+SNQEFTESEF++
Sbjct:   386 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMK 445

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   446 WKEAMFSAGMQLPTLDEINKKEVSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 505

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   506 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 565

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   566 SEKALV 571

 Score = 184 (69.8 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:   196 KDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGD 255
             K EV ++  EI+  +    K+E  E+  +++E  +       ++++Q+       +SK D
Sbjct:   205 KREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQ-IQESQVTSHNKERRSKRD 263

Query:   256 DEEASILQRKIDDLEERANELDKARTSTXXXXX------XXXXXXXXKNVEEAEKAIMVS 309
             ++    L +K   +EE   E +K +  T                   +  EE +K+   S
Sbjct:   264 EK----LDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKS 319

Query:   310 CCCCCSGFSYRSVKSSASRKVIEYIETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVR 369
                  S  S    +        + +   EELNR+RLSR K+E+  H+P F + V GCFVR
Sbjct:   320 DRSSRSSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVR 379

Query:   370 IGIGNNTGIPLYRVSE 385
             IGIGN+   P+YRV+E
Sbjct:   380 IGIGNHNSKPVYRVAE 395


>UNIPROTKB|Q5ZKE3 [details] [associations]
            symbol:RTF1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0001711
            "endodermal cell fate commitment" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
            [GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
            methylation" evidence=IEA] [GO:0080182 "histone H3-K4
            trimethylation" evidence=IEA] InterPro:IPR004343 InterPro:IPR018144
            Pfam:PF03126 PROSITE:PS51360 SMART:SM00719 GO:GO:0005730
            GO:GO:0045944 GO:GO:0006352 GO:GO:0000122 GO:GO:0003697
            GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
            eggNOG:COG5296 GeneTree:ENSGT00390000012493 HOGENOM:HOG000231764
            HOVERGEN:HBG057331 OrthoDB:EOG4X97GV EMBL:AADN02033532
            EMBL:AC145946 EMBL:AJ720141 IPI:IPI00820846 UniGene:Gga.22583
            STRING:Q5ZKE3 Ensembl:ENSGALT00000013997 InParanoid:Q5ZKE3
            Uniprot:Q5ZKE3
        Length = 585

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHG+ +RVFRLEF+SNQEFTESEF++
Sbjct:   355 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMK 414

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   415 WKEAMFSAGMQLPTLDEINKKEVSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 474

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   475 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 534

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   535 SEKALV 540

 Score = 184 (69.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:   196 KDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGD 255
             K EV ++  EI+  +    K+E  E+  +++E  +       ++++Q+       +SK D
Sbjct:   174 KREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQ-IQESQVTSHNKERRSKRD 232

Query:   256 DEEASILQRKIDDLEERANELDKARTSTXXXXX------XXXXXXXXKNVEEAEKAIMVS 309
             ++    L +K   +EE   E +K +  T                   +  EE +K+   S
Sbjct:   233 EK----LDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKS 288

Query:   310 CCCCCSGFSYRSVKSSASRKVIEYIETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVR 369
                  S  S    +        + +   EELNR+RLSR K+E+  H+P F + V GCFVR
Sbjct:   289 DRSSRSSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVR 348

Query:   370 IGIGNNTGIPLYRVSE 385
             IGIGN+   P+YRV+E
Sbjct:   349 IGIGNHNSKPVYRVAE 364


>UNIPROTKB|F1SSV6 [details] [associations]
            symbol:RTF1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0016570 "histone modification" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
            PROSITE:PS51360 SMART:SM00719 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006352 GO:GO:0016570 GeneTree:ENSGT00390000012493
            EMBL:CU467734 EMBL:AEMK01175632 EMBL:CU633572
            Ensembl:ENSSSCT00000005246 Uniprot:F1SSV6
        Length = 701

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHG+ +RVFRLEF+SNQEFTESEF++
Sbjct:   386 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMK 445

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   446 WKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 505

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   506 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 565

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   566 SEKALV 571

 Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 61/229 (26%), Positives = 110/229 (48%)

Query:   158 GNSERVFRLEFISNQEFTESEFIRW-KDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKE 216
             G+ E   RLE ++ +E  +  F R  K + + +   +  K +  +K KE +     Q +E
Sbjct:   179 GDEEDRARLEQMTEKEREQELFNRIEKREVLKKRFEIRKKLKTAKK-KEKKEKKKKQEEE 237

Query:   217 EDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANEL 276
             ++ +++ + +E  + + +N    + +  K +   Q++G   E  I ++K    +++  EL
Sbjct:   238 QEKKKLTQIQES-QVSFHNKPSPEKKKRKNKKKFQAQG---ELKIKRQK---KKKKKTEL 290

Query:   277 DKARTSTXXXXXXXXXXXXXKNVEEAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEYIET 336
                +                ++ + +EK+   S     S       K     K  + +  
Sbjct:   291 LAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRT---SSSDEEEEKEEIPPKS-QPVSL 346

Query:   337 KEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
              EELNR+RLSR K+E+  H+P F + V GCFVRIGIGN+   P+YRV+E
Sbjct:   347 PEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 395


>UNIPROTKB|F1N6E9 [details] [associations]
            symbol:RTF1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
            [GO:0051571 "positive regulation of histone H3-K4 methylation"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
            maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
            cell fate commitment" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
            PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
            GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
            GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
            GO:GO:0001711 CTD:23168 GeneTree:ENSGT00390000012493 KO:K15178
            OMA:CKPTMVS EMBL:DAAA02028563 IPI:IPI00721589 RefSeq:NP_001179414.1
            UniGene:Bt.10050 PRIDE:F1N6E9 Ensembl:ENSBTAT00000002191
            GeneID:518260 KEGG:bta:518260 NextBio:20872617 Uniprot:F1N6E9
        Length = 714

 Score = 495 (179.3 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHG+ +RVFRLEF+SNQEFTESEF++
Sbjct:   399 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMK 458

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   459 WKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 518

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   519 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 578

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   579 SEKALV 584

 Score = 186 (70.5 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 72/271 (26%), Positives = 120/271 (44%)

Query:   123 SSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEF--ISNQEFTESEFI 180
             SS P+E GE+S         S     +++  +   G  E +   E      ++ TE E  
Sbjct:   151 SSAPEE-GEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKE-- 207

Query:   181 RWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKK 240
               ++Q +   +    K EV +K  EI+  +    K+E  E+  +++E  +       +++
Sbjct:   208 --REQELFNRIE---KREVLKKRFEIRKKLKTAKKKEKKEKKKKQEEEQEKKKLTQ-IQE 261

Query:   241 TQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVE 300
             +Q+       +SK D++    L +K   +EE   E +K +  T             +   
Sbjct:   262 SQVTSHNKERRSKRDEK----LDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYS 317

Query:   301 EAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEY------IETKEELNRIRLSRFKMEKLV 354
             + E+          S  S R+  S    +  E       +   EELNR+RLSR K+E+  
Sbjct:   318 DDEEEEEDDKSSEKSDRSSRTTSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWC 377

Query:   355 HLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
             H+P F + V GCFVRIGIGN+   P+YRV+E
Sbjct:   378 HMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 408


>UNIPROTKB|I3LJZ5 [details] [associations]
            symbol:RTF1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
            [GO:0051571 "positive regulation of histone H3-K4 methylation"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
            maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
            cell fate commitment" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
            PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
            GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
            GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
            GO:GO:0001711 GeneTree:ENSGT00390000012493 OMA:CKPTMVS
            EMBL:CU467734 EMBL:AEMK01175632 EMBL:CU633572
            Ensembl:ENSSSCT00000031282 Uniprot:I3LJZ5
        Length = 715

 Score = 495 (179.3 bits), Expect = 3.4e-47, P = 3.4e-47
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             +S P   + EI+GV ET K+Y LG TRTNKGL+LRHG+ +RVFRLEF+SNQEFTESEF++
Sbjct:   400 NSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMK 459

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+   + G+ LPT DE+ +K   I+  + Y++ ++D+E+IV+EKERF+  P NYAMKKT
Sbjct:   460 WKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKT 519

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  +Q ++++LEERA  LD+ RT                N+ E
Sbjct:   520 QLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVE 579

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   580 SEKALV 585

 Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 61/229 (26%), Positives = 110/229 (48%)

Query:   158 GNSERVFRLEFISNQEFTESEFIRW-KDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKE 216
             G+ E   RLE ++ +E  +  F R  K + + +   +  K +  +K KE +     Q +E
Sbjct:   193 GDEEDRARLEQMTEKEREQELFNRIEKREVLKKRFEIRKKLKTAKK-KEKKEKKKKQEEE 251

Query:   217 EDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANEL 276
             ++ +++ + +E  + + +N    + +  K +   Q++G   E  I ++K    +++  EL
Sbjct:   252 QEKKKLTQIQES-QVSFHNKPSPEKKKRKNKKKFQAQG---ELKIKRQK---KKKKKTEL 304

Query:   277 DKARTSTXXXXXXXXXXXXXKNVEEAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEYIET 336
                +                ++ + +EK+   S     S       K     K  + +  
Sbjct:   305 LAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRT---SSSDEEEEKEEIPPKS-QPVSL 360

Query:   337 KEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
              EELNR+RLSR K+E+  H+P F + V GCFVRIGIGN+   P+YRV+E
Sbjct:   361 PEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 409


>ZFIN|ZDB-GENE-030131-6778 [details] [associations]
            symbol:rtf1 "Rtf1, Paf1/RNA polymerase II complex
            component, homolog (S. cerevisiae)" species:7955 "Danio rerio"
            [GO:0016570 "histone modification" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0014032 "neural crest cell development"
            evidence=IGI;IMP] [GO:0001756 "somitogenesis" evidence=IGI;IMP]
            [GO:0036342 "post-anal tail morphogenesis" evidence=IGI]
            [GO:0043473 "pigmentation" evidence=IMP] [GO:0007507 "heart
            development" evidence=IMP] InterPro:IPR004343 InterPro:IPR018144
            Pfam:PF03126 PROSITE:PS51360 SMART:SM00719
            ZFIN:ZDB-GENE-030131-6778 GO:GO:0005634 GO:GO:0007507 GO:GO:0003677
            GO:GO:0006352 GO:GO:0001756 GO:GO:0016570 GO:GO:0014032
            GO:GO:0043473 GO:GO:0036342 GeneTree:ENSGT00390000012493
            EMBL:BX284673 IPI:IPI00488636 Ensembl:ENSDART00000015417
            ArrayExpress:F1QFQ9 Bgee:F1QFQ9 Uniprot:F1QFQ9
        Length = 739

 Score = 495 (179.3 bits), Expect = 5.3e-47, P = 5.3e-47
 Identities = 94/186 (50%), Positives = 129/186 (69%)

Query:   123 SSHP-QEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIR 181
             S+ P   + EI  V ET KIY LG TRTNKGL+LRHGN  RVFRLEF+SNQEFTESEF++
Sbjct:   419 SNKPVYRVAEIIDVVETAKIYQLGSTRTNKGLQLRHGNDTRVFRLEFVSNQEFTESEFMK 478

Query:   182 WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKT 241
             WK+  M  G+ LPT DE+ +K + I+  + Y++ ++D+E IV+EK+RF+  P NYAMKKT
Sbjct:   479 WKEAMMIAGMQLPTLDEINKKEQSIKEAVNYKFNDKDIEDIVKEKDRFRKAPPNYAMKKT 538

Query:   242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTXXXXXXXXXXXXXKNVEE 301
             QL+KE+ MA+  GD ++A  LQ ++++LEERA  LD+ RT                N+ E
Sbjct:   539 QLLKEKAMAEESGDGDKAKTLQDQLNELEERAEALDRQRTKNISAISYINQRNRSWNIVE 598

Query:   302 AEKAIM 307
             +EKA++
Sbjct:   599 SEKALV 604

 Score = 192 (72.6 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 60/230 (26%), Positives = 108/230 (46%)

Query:   158 GNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEE 217
             G+ E   RLE ++ +E  +  F R     + +   L  + E+++K K  +     + K++
Sbjct:   209 GDEEDRARLEQMTEKEREQELFNR-----IEKREVLKRRFEIKQKLKTAKKKEKEEKKKK 263

Query:   218 DVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANELD 277
               E+  +EK +    P    +      KER + + +  D+++  ++    + E+R N   
Sbjct:   264 QEEE--QEKRKQSQVPDTQVVMSHN--KERRIKRDEKLDKKSQAMEELKAEREKRKNRTA 319

Query:   278 K--ARTSTXXXXXXXXXXXXXKNVEEAEKAIMVSCCCCCSGFSYRSVKSSASRKVIEYIE 335
             +  A+                +  ++ + ++        S F     K  A  K  + + 
Sbjct:   320 ELLAKRQPLKTSEVYSDDEEEEEDDDDKSSVKSDRSSRSSSFDEEEEKEEAPPKS-QPVS 378

Query:   336 TKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
               +ELNRIRLSR K+E+  H+P F + V GCFVRIGIGN++  P+YRV+E
Sbjct:   379 LPDELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSNKPVYRVAE 428


>UNIPROTKB|H0YKX1 [details] [associations]
            symbol:RTF1 "RNA polymerase-associated protein RTF1
            homolog" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006352
            "DNA-dependent transcription, initiation" evidence=IEA] [GO:0016570
            "histone modification" evidence=IEA] InterPro:IPR004343
            Pfam:PF03126 PROSITE:PS51360 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006352 GO:GO:0016570 EMBL:AC087721 ChiTaRS:RTF1
            HGNC:HGNC:28996 Ensembl:ENST00000560447 Uniprot:H0YKX1
        Length = 171

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 82/162 (50%), Positives = 117/162 (72%)

Query:   147 TRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEI 206
             TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+   + G+ LPT DE+ +K   I
Sbjct:     3 TRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSI 62

Query:   207 QNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKI 266
             +  + Y++ ++D+E+IV+EKERF+  P NYAMKKTQL+KE+ MA+  GD ++A  +Q ++
Sbjct:    63 KEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQL 122

Query:   267 DDLEERANELDKARTSTXXXXXXXXXXXXXKNVEEAEKAIMV 308
             ++LEERA  LD+ RT                N+ E+EKA++V
Sbjct:   123 NELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVV 164

 Score = 113 (44.8 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 22/36 (61%), Positives = 30/36 (83%)

Query:    38 QIVREKERFKPTPYNYAMKKTQLMKERDMAQSKIGE 73
             +IV+EKERF+  P NYAMKKTQL+KE+ MA+  +G+
Sbjct:    77 EIVKEKERFRKAPPNYAMKKTQLLKEKAMAED-LGD 111


>WB|WBGene00009103 [details] [associations]
            symbol:F25B3.6 species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] [GO:0016570 "histone modification" evidence=IEA]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0061199
            "striated muscle contraction involved in embryonic body
            morphogenesis" evidence=IMP] InterPro:IPR004343 InterPro:IPR018144
            Pfam:PF03126 PROSITE:PS51360 SMART:SM00719 GO:GO:0005634
            GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0002119 GO:GO:0003677 GO:GO:0040011 GO:GO:0006352
            GO:GO:0016570 GO:GO:0040035 GO:GO:0061199
            GeneTree:ENSGT00390000012493 KO:K15178 OMA:PTNYAMK EMBL:Z81101
            EMBL:Z70752 PIR:T21325 RefSeq:NP_505473.1 ProteinModelPortal:G5EBY0
            SMR:G5EBY0 IntAct:G5EBY0 EnsemblMetazoa:F25B3.6 GeneID:179345
            KEGG:cel:CELE_F25B3.6 CTD:179345 WormBase:F25B3.6 NextBio:905006
            Uniprot:G5EBY0
        Length = 613

 Score = 320 (117.7 bits), Expect = 4.9e-28, P = 4.9e-28
 Identities = 69/206 (33%), Positives = 122/206 (59%)

Query:    79 DGNLSSLPRAGIEPEIVEVVYKKDLISSAMFYGSVCDLTSWHIFSSHPQ-EIGEISGVCE 137
             DG LS L RA +    + ++       S +  G    L    +  S  +  I +I GV E
Sbjct:   253 DG-LSELRRARLSRHKLSLMIHAPFFDSTVV-GCYVRLGQGQMSGSGSKYRIWKIVGVEE 310

Query:   138 TGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKD 197
             + K+Y L   +TNK +K ++G SER FR++F+SN +F + EF  W   C   G  LPT D
Sbjct:   311 SNKVYELEGKKTNKIIKCQNGGSERPFRMQFVSNADFEQIEFDEWLLACKRHG-NLPTVD 369

Query:   198 EVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDE 257
              +++K ++I+  + +++ +++V+ +++EK +++  P N+AM K    K++++AQ +GD  
Sbjct:   370 IMDKKKQDIEKAINHKYSDKEVDLMIKEKSKYQTVPRNFAMTKANWSKQKELAQQRGDIR 429

Query:   258 EASILQRKIDDLEERANELDKARTST 283
             EA  +Q KID++E +A+EL+K R+ +
Sbjct:   430 EAEQIQTKIDEIERQADELEKERSKS 455


>FB|FBgn0051702 [details] [associations]
            symbol:CG31702 species:7227 "Drosophila melanogaster"
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0016570 "histone modification" evidence=IEA]
            InterPro:IPR004343 Pfam:PF03126 PROSITE:PS51360 GO:GO:0005634
            EMBL:AE014134 GO:GO:0003677 GO:GO:0006352 GO:GO:0016570
            GeneTree:ENSGT00390000012493 KO:K15178 OrthoDB:EOG4HX3GB
            EMBL:BT120025 RefSeq:NP_724373.1 UniGene:Dm.21503 SMR:Q8IME8
            EnsemblMetazoa:FBtr0085934 GeneID:318904 KEGG:dme:Dmel_CG31702
            UCSC:CG31702-RA FlyBase:FBgn0051702 InParanoid:Q8IME8 OMA:IMERDMA
            GenomeRNAi:318904 NextBio:846500 Uniprot:Q8IME8
        Length = 441

 Score = 240 (89.5 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 60/208 (28%), Positives = 111/208 (53%)

Query:    73 ESQPFRDGNLSSLPRAGIEPEIVEVVYKKDLISSAMFYGSVCDLTSWHIFSSHPQEIGEI 132
             ES+  R  NL  L RA ++   ++ +  K + + A+  GS   +    ++S     I E 
Sbjct:    94 ESEE-RVSNLEQLSRAVLKRNDIKNLLGKPIFAEAVI-GSFVRINVGKVYS-----IYET 146

Query:   133 SGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVA 192
               + +  K Y +   RTN  L LR G+ +R  R++ +SNQ  T+ EF+ W +  +     
Sbjct:   147 IALHQDSKDYRVDGKRTNLTLVLRCGSEKRYSRIDVVSNQPITQKEFLLWLETNLRNRCT 206

Query:   193 LPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQS 252
             LPT +++ +K  +++N   Y + E DVE+++++K+       N A +K  L+ ERDMA  
Sbjct:   207 LPTLNDIAKKQVQVKNACKYSYTETDVEKLIQDKKE-AGIKQNAAYRKISLIIERDMAAG 265

Query:   253 KGDDEEASILQRKIDDLEERAN-ELDKA 279
               D E+  +L++KI +++E    +++K+
Sbjct:   266 MNDVEKVQVLEKKILEIDEEPRPQIEKS 293


>FB|FBgn0051703 [details] [associations]
            symbol:CG31703 species:7227 "Drosophila melanogaster"
            [GO:0016570 "histone modification" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
            initiation" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR004343 Pfam:PF03126 PROSITE:PS51360 GO:GO:0005634
            EMBL:AE014134 GO:GO:0003677 GO:GO:0006352 GO:GO:0016570
            eggNOG:COG5296 GeneTree:ENSGT00390000012493 KO:K15178
            RefSeq:NP_724376.1 ProteinModelPortal:Q8IME7 SMR:Q8IME7
            PRIDE:Q8IME7 EnsemblMetazoa:FBtr0085946 GeneID:318905
            KEGG:dme:Dmel_CG31703 UCSC:CG31703-RA FlyBase:FBgn0051703
            InParanoid:Q8IME7 OrthoDB:EOG4HX3GB PhylomeDB:Q8IME7
            GenomeRNAi:318905 NextBio:846505 Uniprot:Q8IME7
        Length = 439

 Score = 239 (89.2 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 61/207 (29%), Positives = 110/207 (53%)

Query:    73 ESQPFRDGNLSSLPRAGIEPEIVEVVYKKDLISSAMFYGSVCDLTSWHIFSSHPQEIGEI 132
             ES+  R  NL  L RA ++   ++ +  K + + A+  GS   L    ++S     I E 
Sbjct:    94 ESEE-RVSNLEQLSRAVLKRNDIKNLLGKPIFAEAVI-GSFVRLNVGKVYS-----IYET 146

Query:   133 SGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVA 192
               + +  K Y +   RTN  L LR G+ +R  R++ +SNQ  T+ EF+ W +  +     
Sbjct:   147 IALHQDSKDYRVDGKRTNLILVLRCGSEKRYSRIDVVSNQPITQKEFLLWLETNLRNRCT 206

Query:   193 LPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQS 252
             LPT +++ +K  +++N   Y + E DVE+++++K+       N A +K  L+ ERDMA  
Sbjct:   207 LPTLNDIAKKQVQVKNACKYSYTETDVEKLIQDKKE-AGIKQNAAYRKISLIIERDMAAG 265

Query:   253 KGDDEEASILQRKIDDLEERAN-ELDK 278
               D E+  +L++KI +++E    +++K
Sbjct:   266 MNDVEKVQVLEKKILEIDEEPRPQIEK 292


>POMBASE|SPBC651.09c [details] [associations]
            symbol:SPBC651.09c "RNA polymerase II associated Paf1
            complex (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0006352 "DNA-dependent transcription, initiation"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006368 "transcription elongation
            from RNA polymerase II promoter" evidence=ISO] [GO:0016571 "histone
            methylation" evidence=ISO] [GO:0016574 "histone ubiquitination"
            evidence=ISO] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISO]
            InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
            SMART:SM00719 PomBase:SPBC651.09c GO:GO:0006355 GO:GO:0003677
            EMBL:CU329671 GO:GO:0006352 GO:GO:0006368 GO:GO:0016574
            GO:GO:0016593 GO:GO:0016571 HSSP:Q96BX6 eggNOG:COG5296 KO:K15178
            PIR:T40608 RefSeq:NP_595507.1 ProteinModelPortal:O94667
            STRING:O94667 EnsemblFungi:SPBC651.09c.1 GeneID:2541123
            KEGG:spo:SPBC651.09c OMA:MDDDIIG OrthoDB:EOG4WWVTN NextBio:20802236
            Uniprot:O94667
        Length = 560

 Score = 215 (80.7 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 43/141 (30%), Positives = 79/141 (56%)

Query:   131 EISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEG 190
             ++ G+ E+ K Y +    T   L+  HG S+RVF +  +SN+ F++ +F RW  Q M + 
Sbjct:   265 QVKGILESRKPYRVDGVLTKVSLECFHGRSKRVFDVNVLSNEPFSDHDFQRWHHQMMEDK 324

Query:   191 VALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMA 250
             +++P+K+ V+RK  ++++   Y   E++V  I+  K+     P N A +KT+L + R  A
Sbjct:   325 LSMPSKNFVQRKLNDLRDMSKYVLSEKEVSDIINRKKELSRVPSNIAAEKTRLRQRRQAA 384

Query:   251 QSKGDDEEASILQRKIDDLEE 271
                G+ E    +  +++ LEE
Sbjct:   385 YVAGNAELVKEIDDQLNTLEE 405


>TAIR|locus:2205996 [details] [associations]
            symbol:VIP5 "vernalization independence 5" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0016570 "histone
            modification" evidence=IEA] [GO:0009910 "negative regulation of
            flower development" evidence=IMP] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=RCA;IMP] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0030244
            "cellulose biosynthetic process" evidence=RCA] [GO:0030422
            "production of siRNA involved in RNA interference" evidence=RCA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=RCA] [GO:0043687 "post-translational protein
            modification" evidence=RCA] [GO:0048193 "Golgi vesicle transport"
            evidence=RCA] [GO:0048573 "photoperiodism, flowering" evidence=RCA]
            [GO:0051276 "chromosome organization" evidence=RCA]
            InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
            SMART:SM00719 EMBL:CP002684 GO:GO:0005634 GO:GO:0045893
            GO:GO:0003677 GO:GO:0006352 GO:GO:0016570 EMBL:AC018908
            GO:GO:0009910 KO:K15178 OMA:YPLEGKY IPI:IPI00529121 PIR:A96636
            RefSeq:NP_176299.1 UniGene:At.36545 ProteinModelPortal:Q9C950
            SMR:Q9C950 STRING:Q9C950 PRIDE:Q9C950 EnsemblPlants:AT1G61040.1
            GeneID:842395 KEGG:ath:AT1G61040 TAIR:At1g61040 InParanoid:Q9C950
            PhylomeDB:Q9C950 ProtClustDB:CLSN2681831 Genevestigator:Q9C950
            Uniprot:Q9C950
        Length = 643

 Score = 169 (64.5 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 57/194 (29%), Positives = 90/194 (46%)

Query:   140 KIYSLGKTRTNKGLKLRHGNSERVFR--LEFISNQEFTESEFIRW-KDQCMTEGVALPTK 196
             K Y L    T+K L +  GN     R  +  IS+    E E+ +W ++   T G  +PTK
Sbjct:   323 KTYKLENKTTHKYLNVVWGNETSAARWQMAMISDGHPLEEEYRQWIREVERTNG-RMPTK 381

Query:   197 DEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDD 256
              ++  K + IQ    + +  E V+Q+++EK+     P N A +K +L KE ++AQSK D+
Sbjct:   382 QDISEKKEAIQRTNSFVYSAETVKQMLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDE 441

Query:   257 EEASILQRKIDDLEERANE--LDKARTSTXXXXXXXXXXXXXKNVEEAEKAIMVSCCCCC 314
                  ++ KI  L+   N+  +DK +                KN  E  K+I  S     
Sbjct:   442 AGVERIKSKIKQLDASRNKKGVDK-KALKLAEMNKKNRAENFKNASEV-KSITASLKAGE 499

Query:   315 SG---FSYRSVKSS 325
             +G   FS R  +SS
Sbjct:   500 AGYDPFSRRWTRSS 513


>ASPGD|ASPL0000075787 [details] [associations]
            symbol:rtfA species:162425 "Emericella nidulans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006352 "DNA-dependent
            transcription, initiation" evidence=IEA] [GO:0016570 "histone
            modification" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
            evidence=IEA] [GO:0035327 "transcriptionally active chromatin"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001076
            "RNA polymerase II transcription factor binding transcription
            factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0010913 "regulation of sterigmatocystin biosynthetic process"
            evidence=IMP] [GO:1900376 "regulation of secondary metabolite
            biosynthetic process" evidence=IMP] [GO:0043935 "sexual sporulation
            resulting in formation of a cellular spore" evidence=IMP]
            [GO:0030448 "hyphal growth" evidence=IMP] [GO:0043936 "asexual
            sporulation resulting in formation of a cellular spore"
            evidence=IMP] [GO:0090262 "regulation of transcription-coupled
            nucleotide-excision repair" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:2001160 "regulation of
            histone H3-K79 methylation" evidence=IEA] [GO:0032968 "positive
            regulation of transcription elongation from RNA polymerase II
            promoter" evidence=IEA] [GO:0001015 "snoRNA transcription from an
            RNA polymerase II promoter" evidence=IEA] [GO:0051569 "regulation
            of histone H3-K4 methylation" evidence=IEA] [GO:2001173 "regulation
            of histone H2B conserved C-terminal lysine ubiquitination"
            evidence=IEA] [GO:0070911 "global genome nucleotide-excision
            repair" evidence=IEA] [GO:0034402 "recruitment of 3'-end processing
            factors to RNA polymerase II holoenzyme complex" evidence=IEA]
            [GO:0031938 "regulation of chromatin silencing at telomere"
            evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
            [GO:2001209 "positive regulation of transcription elongation from
            RNA polymerase I promoter" evidence=IEA] [GO:2001165 "positive
            regulation of phosphorylation of RNA polymerase II C-terminal
            domain serine 2 residues" evidence=IEA] InterPro:IPR004343
            Pfam:PF03126 PROSITE:PS51360 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006352 GO:GO:0016570 GO:GO:0003746 EMBL:BN001303
            EMBL:AACD01000078 eggNOG:COG5296 KO:K15178 OMA:YPLEGKY
            RefSeq:XP_662174.1 ProteinModelPortal:Q5B4G0 STRING:Q5B4G0
            EnsemblFungi:CADANIAT00005867 GeneID:2872371 KEGG:ani:AN4570.2
            HOGENOM:HOG000184951 OrthoDB:EOG4Q5CZ2 Uniprot:Q5B4G0
        Length = 600

 Score = 162 (62.1 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 43/140 (30%), Positives = 73/140 (52%)

Query:   139 GKIYSL----GKT-RTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVAL 193
             GK Y+L    G+T  T++   L HG + R F     S+  FTE+EF RW+     E   +
Sbjct:   325 GKKYALEGANGRTFTTDQYAVLAHGKTTRAFPFVACSDSPFTEAEFNRWRQVMAVEDCKM 384

Query:   194 PTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSK 253
             PTK ++ +K  +I   + +Q+  E++ + +R K+    T   +  K+  + K+  +AQ  
Sbjct:   385 PTKSQLAKKVMDINRLINHQFTPEELNEKLR-KQGLLDTKTTF-FKRVDIEKKLKIAQEL 442

Query:   254 GDDEEASILQRKIDDLEERA 273
             GDD+E   LQ ++ +L   A
Sbjct:   443 GDDDEVGRLQVELANLGSSA 462


>DICTYBASE|DDB_G0286523 [details] [associations]
            symbol:DDB_G0286523 species:44689 "Dictyostelium
            discoideum" [GO:0016570 "histone modification" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR004343 Pfam:PF03126 PROSITE:PS51360
            dictyBase:DDB_G0286523 GO:GO:0005634 GO:GO:0003677 GO:GO:0006352
            GO:GO:0016570 EMBL:AAFI02000087 eggNOG:COG5296 KO:K15178
            RefSeq:XP_637691.1 ProteinModelPortal:Q54LP1
            EnsemblProtists:DDB0218834 GeneID:8625657 KEGG:ddi:DDB_G0286523
            InParanoid:Q54LP1 OMA:PMDMEIS Uniprot:Q54LP1
        Length = 627

 Score = 159 (61.0 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 41/155 (26%), Positives = 76/155 (49%)

Query:   129 IGEISGVCETG-KIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCM 187
             I EI  +  TG K Y +    T+K L L +  S + F +E +SN   T +E  +W    +
Sbjct:   310 IAEIVEI-RTGHKQYKVENKETDKLLVLSYAGSTKEFGIENVSNNAITPAEHEKWISDMV 368

Query:   188 TEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKER 247
                  LPT +E++ K  +I+    Y +  ED+E+   ++ ++  TP N A++K + +  R
Sbjct:   369 RAKQVLPTPEEIDMKIGDIKKAQDYTYTNEDIEKRASDRSKYLKTPVNIAIEKAKSIALR 428

Query:   248 DMAQSKGDDEEASILQRKIDDLEERANELDKARTS 282
             +    +   +E   +  KI++L + A  + +   S
Sbjct:   429 ETLDPQS--QEYRTICEKIEELTKLAISIKEENVS 461


>FB|FBgn0040356 [details] [associations]
            symbol:CG12498 species:7227 "Drosophila melanogaster"
            [GO:0016570 "histone modification" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
            InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
            SMART:SM00719 GO:GO:0005634 GO:GO:0003677 EMBL:AE014298
            GO:GO:0006352 GO:GO:0016570 GeneTree:ENSGT00390000012493 KO:K15178
            EMBL:AL138971 EMBL:BT031073 RefSeq:NP_570030.1 UniGene:Dm.26439
            SMR:Q9V3X3 IntAct:Q9V3X3 MINT:MINT-1024782
            EnsemblMetazoa:FBtr0070489 GeneID:31272 KEGG:dme:Dmel_CG12498
            UCSC:CG12498-RA FlyBase:FBgn0040356 InParanoid:Q9V3X3 OMA:HELNDIS
            OrthoDB:EOG42FR0Q GenomeRNAi:31272 NextBio:772788 Uniprot:Q9V3X3
        Length = 261

 Score = 146 (56.5 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 28/87 (32%), Positives = 47/87 (54%)

Query:   129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
             I E+ G+CE    Y + +  TN  L+LR+ + E    +  +SN  FT+ EF  W+D C+ 
Sbjct:   100 IAEVLGICELDFGYKVEQIPTNVALRLRYDDLEMQHEINDVSNLNFTQEEFELWRDNCVN 159

Query:   189 EGVALPTKDEVERKSKEIQNGMMYQWK 215
             + ++ PT   + RK  E+ N +  + K
Sbjct:   160 QAISPPTTHILTRKKVELYNALQLEAK 186


>SGD|S000003213 [details] [associations]
            symbol:RTF1 "Subunit of RNAPII-associated chromatin
            remodeling Paf1 complex" species:4932 "Saccharomyces cerevisiae"
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016593 "Cdc73/Paf1
            complex" evidence=IPI] [GO:2001165 "positive regulation of
            phosphorylation of RNA polymerase II C-terminal domain serine 2
            residues" evidence=IMP] [GO:0034402 "recruitment of 3'-end
            processing factors to RNA polymerase II holoenzyme complex"
            evidence=IMP] [GO:0070911 "global genome nucleotide-excision
            repair" evidence=IMP] [GO:0090262 "regulation of
            transcription-coupled nucleotide-excision repair" evidence=IGI]
            [GO:0051569 "regulation of histone H3-K4 methylation" evidence=IMP]
            [GO:0035327 "transcriptionally active chromatin" evidence=IDA]
            [GO:2001173 "regulation of histone H2B conserved C-terminal lysine
            ubiquitination" evidence=IDA;IMP] [GO:2001163 "regulation of
            phosphorylation of RNA polymerase II C-terminal domain serine 2
            residues" evidence=IMP] [GO:0006368 "transcription elongation from
            RNA polymerase II promoter" evidence=IGI;IMP] [GO:2001209 "positive
            regulation of transcription elongation from RNA polymerase I
            promoter" evidence=IDA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0031126 "snoRNA 3'-end processing" evidence=IMP] [GO:0001015
            "snoRNA transcription from an RNA polymerase II promoter"
            evidence=IMP] [GO:0031938 "regulation of chromatin silencing at
            telomere" evidence=IMP] [GO:2001160 "regulation of histone H3-K79
            methylation" evidence=IMP] [GO:2001166 "regulation of histone H2B
            ubiquitination" evidence=IMP] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0001076 "RNA polymerase II transcription factor
            binding transcription factor activity" evidence=IPI] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IGI] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IMP]
            [GO:0031124 "mRNA 3'-end processing" evidence=IMP] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
            initiation" evidence=IEA] [GO:0016570 "histone modification"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
            SMART:SM00719 SGD:S000003213 EMBL:BK006941 GO:GO:0003677
            GO:GO:0006352 GO:GO:0003723 GO:GO:0070911 GO:GO:0000122
            GO:GO:0016570 GO:GO:0006368 EMBL:Z49149 GO:GO:0035327 GO:GO:0001076
            GO:GO:0031938 GO:GO:0032968 GO:GO:0051569 GO:GO:0016593
            GO:GO:2001165 GO:GO:2001209 GO:GO:0034402 GO:GO:2001173
            GO:GO:0090262 GO:GO:0031126 GO:GO:0001015 eggNOG:COG5296
            GeneTree:ENSGT00390000012493 KO:K15178 OrthoDB:EOG4WWVTN
            EMBL:U86702 EMBL:Z72766 EMBL:Z72767 PIR:S53936 RefSeq:NP_011270.1
            ProteinModelPortal:P53064 SMR:P53064 DIP:DIP-4065N IntAct:P53064
            MINT:MINT-502955 STRING:P53064 PaxDb:P53064 PeptideAtlas:P53064
            EnsemblFungi:YGL244W GeneID:852607 KEGG:sce:YGL244W CYGD:YGL244w
            HOGENOM:HOG000065976 OMA:YPLEGKY NextBio:971796
            Genevestigator:P53064 GermOnline:YGL244W GO:GO:2001160
            Uniprot:P53064
        Length = 558

 Score = 128 (50.1 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 30/141 (21%), Positives = 72/141 (51%)

Query:   140 KIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEV 199
             K Y++GK  TN+   +  G   +VF++ + S+  F E E+ R+        +  P+   +
Sbjct:   299 KPYNMGKFYTNQYFGVTQGKDRKVFQMNYFSDGLFAEDEYQRYLRALDNSQMIKPSLHSL 358

Query:   200 ERKSKEIQNGMMYQWKEEDVEQIVREKERF--KPTPYNYAMKKTQLMKERDMAQSKGDDE 257
               K+KE+ + +     ++  +++VR + +F  K +  N  ++KT L ++   A+   +++
Sbjct:   359 SNKTKEVMDFVNTPLTDKTTDEVVRHRMQFNKKLSGTNAVLEKTVLREKLQYAKETNNEK 418

Query:   258 EASILQRKIDDLEERANELDK 278
             + +    ++ + E+R +  +K
Sbjct:   419 DIAKYSAQLRNFEKRMSVYEK 439


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      388       375   0.00088  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  22
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  243 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.27u 0.11s 37.38t   Elapsed:  00:00:02
  Total cpu time:  37.27u 0.11s 37.38t   Elapsed:  00:00:02
  Start:  Thu Aug 15 12:00:34 2013   End:  Thu Aug 15 12:00:36 2013

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