RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14634
(388 letters)
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3,
transcription elongation, structural genomics, struc
genomics consortium, SGC; 1.80A {Homo sapiens} PDB:
2db9_A
Length = 137
Score = 104 bits (262), Expect = 1e-27
Identities = 49/80 (61%), Positives = 63/80 (78%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+ +
Sbjct: 57 VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFS 116
Query: 189 EGVALPTKDEVERKSKEIQN 208
G+ LPT DE+ +K I+
Sbjct: 117 AGMQLPTLDEINKKELSIKE 136
Score = 65.7 bits (160), Expect = 3e-13
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 332 EYIETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
+ + EELNR+RLSR K+E+ H+P F + V GCFVRIGIGN+ P+YRV+E
Sbjct: 6 QPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 59
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription,
elongation, PAF1 complex, histone H3 methylation, H2B
ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens}
SCOP: b.34.21.1
Length = 153
Score = 102 bits (256), Expect = 2e-26
Identities = 49/80 (61%), Positives = 63/80 (78%)
Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
+ EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+ +
Sbjct: 71 VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFS 130
Query: 189 EGVALPTKDEVERKSKEIQN 208
G+ LPT DE+ +K I+
Sbjct: 131 AGMQLPTLDEINKKELSIKE 150
Score = 66.9 bits (163), Expect = 1e-13
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 315 SGFSYRSVKSSASRKVIEYIETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGN 374
S + S + + EELNR+RLSR K+E+ H+P F + V GCFVRIGIGN
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGN 62
Query: 375 NTGIPLYRVSE 385
+ P+YRV+E
Sbjct: 63 HNSKPVYRVAE 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 35/267 (13%), Positives = 81/267 (30%), Gaps = 69/267 (25%)
Query: 93 EIVEVVYKKDLISSAMFYGSVCDLTSWHIFSSHPQEIGEISGVCETGKIYSLGKTRTNKG 152
+I+ V ++ + + V D+ I S +EI I K +
Sbjct: 20 DILSV-FEDAFVDNFDCK-DVQDMPK-SILSK--EEIDHIIMS----------KDAVSGT 64
Query: 153 LKL----RHGNSERVFRLEFISNQEFTESEFI--RWKDQCMTEGVALPTKDEVERKSKEI 206
L+L E V + F+ +F+ K + ++ T+ +E++ +
Sbjct: 65 LRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQ--RQPSMMTRMYIEQRDRLY 120
Query: 207 QNGMMYQ----WKEEDVEQIVREK-ERFKPTPYN--YAMK---KTQLMKE--RD------ 248
+ ++ + + ++ R+ +P + KT + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 249 ---------MAQSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRK-- 297
+ + +LQ+ + ++ ++ I I RR
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 298 ------------NVEEAE--KAIMVSC 310
NV+ A+ A +SC
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSC 266
Score = 37.9 bits (87), Expect = 0.006
Identities = 56/485 (11%), Positives = 118/485 (24%), Gaps = 200/485 (41%)
Query: 4 GFYLENWST--------LETFVFQKSK-----QIFPMGGLFLIPSAFQIVREKE------ 44
F + T ++ Q+ + Q+F + + R +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---------KYNVSRLQPYLKLRQ 142
Query: 45 ---RFKPTPYN--YAMK---KTQLMKE--RDMAQSKIGESQPFR---------------- 78
+P + KT + + K+ F+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 79 ----------DGNLSSLPRAGIEPEI-VEVV--YKKDLISSAMFYGS------VCDLTSW 119
D N +S ++ + + + L+ S + V + +W
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 120 HIFSSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESE- 178
+ F + C+ L TR + + L+ S T E
Sbjct: 260 NAF-----NLS-----CKI-----LLTTRFKQVTDFLSAATTTHISLDHHS-MTLTPDEV 303
Query: 179 ---FIRWKDQCMTEGVALP-----------------TKDEVER----------------- 201
+++ D + LP +D +
Sbjct: 304 KSLLLKYLDCRPQD---LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 202 ------KSKEIQNGMMYQ-------------------W---KEEDVEQIVREKERFKPTP 233
+ E + M+ W + DV +V +
Sbjct: 361 SSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-------- 410
Query: 234 YNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNR 293
+ + + + + + SI ++ + NE R S +++
Sbjct: 411 ----------LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-------SIVDHY 453
Query: 294 NRRKNVEEAEKAIMVSCCCCCSGFSYRSVKSSASR--KVIEYIETKEELNRIRLS-RFKM 350
N K + + + Y S K IE+ E + L RF
Sbjct: 454 NIPKTFDSDDLIPP-----YLDQYFY----SHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 351 EKLVH 355
+K+ H
Sbjct: 505 QKIRH 509
Score = 35.6 bits (81), Expect = 0.034
Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 41/165 (24%)
Query: 204 KEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQ 263
K++Q+ +E+++ I+ K+ T + T L K+ +M Q ++ +L+
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGT---LRLFWTLLSKQEEMVQKFVEE----VLR 88
Query: 264 RKIDDLEERANELDKARTSTISSISYINNRNRRKNVEEAEKAIMVSCCCCCSGFSYRSVK 323
L + ++ + YI R+R N + F+ +V
Sbjct: 89 INYKFLMSPIKTEQRQP--SMMTRMYIEQRDRLYNDNQV--------------FAKYNV- 131
Query: 324 SSASRKVIEYIETKEELNRIR--LSRFKMEKLVHLPIFGQIVIGC 366
SR + ++R L + K V + G V+G
Sbjct: 132 ---SR--------LQPYLKLRQALLELRPAKNVLI--DG--VLGS 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 60/398 (15%), Positives = 103/398 (25%), Gaps = 179/398 (44%)
Query: 56 KKTQLMKERDMAQS----KIGESQPFRDGNLSSLPRA-------------G---IE---P 92
T L+K +++ ++ +I +PF + S+L RA G +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 93 EIVEV--VYK---KDLISSA---------------MFYGSVCDLTSW------------- 119
E+ ++ Y DLI + + ++ W
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 120 -HIFSSHPQEIGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFR-----LEFI---- 169
I S P IG I Y + T K L G + + +
Sbjct: 232 LSIPISCPL-IGVIQLAH-----YVV----TAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 170 ------SNQEFTE--SEFIRW------KDQCMTEGVALPTKDEVERKSKEIQNGMMYQWK 215
S + F + I + +LP + S E G
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSILEDSLENNEG------ 333
Query: 216 EEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANE 275
P+P M +E +Q ++ + N
Sbjct: 334 --------------VPSP---------------MLSISNLTQEQ--VQDYVN----KTNS 358
Query: 276 LDKARTSTISSISYINNRNRRKNVEEAEKAIMVSCCCCCSGF---------SYRSVKSSA 326
+ IS +N + V SG + R K+ +
Sbjct: 359 -HLPAGKQV-EISLVN--GAKNLV--------------VSGPPQSLYGLNLTLRKAKAPS 400
Query: 327 ----SRKVIEYIETKEELNRIRLS-RFKMEKLVHLPIF 359
SR I + E K ++ S RF LP+
Sbjct: 401 GLDQSR--IPFSERK-----LKFSNRF-------LPVA 424
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.001
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 25/95 (26%)
Query: 176 ESEFIR-WKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPY 234
E E IR W+++ L D + ++ +W+ E+ ++ E +
Sbjct: 83 EPESIRKWREEQRKR---LQELDAASKVMEQ-------EWR----EKAKKDLEEW----- 123
Query: 235 NYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDL 269
+ Q+ K + + ++A Q D+
Sbjct: 124 -NQRQSEQVEKNKINNR---IADKAFYQQPD-ADI 153
Score = 35.1 bits (80), Expect = 0.018
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 28/92 (30%)
Query: 215 KEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERAN 274
++ E I + +E + + ++E D A + E ++ +++ +R +
Sbjct: 80 LTQEPESIRKWREEQR-----------KRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 275 E-LDKARTSTISSISYINNRNRRKNVEEAEKA 305
E ++K + NNR A+KA
Sbjct: 129 EQVEKNKI---------NNR-------IADKA 144
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.10
Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 21/146 (14%)
Query: 151 KGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGM 210
+ +R + R I+ Q +R K Q M + R +
Sbjct: 827 RMYVVR--KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYH 884
Query: 211 MYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASI--------L 262
++ R M K +L K + A+S ++ I L
Sbjct: 885 RTLKAIVYLQCCYRRM-----------MAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
Query: 263 QRKIDDLEERANELDKARTSTISSIS 288
QRKID+ + L + + + S
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYS 959
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 31.1 bits (69), Expect = 0.74
Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 17/144 (11%)
Query: 156 RHGNSERVFRLEFISNQEFTESEFIRWKDQC---MTEGVALPTKDEVERKSKEIQNGMMY 212
R G ++ ++E ++ E K E + S ++ + M
Sbjct: 452 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQR 511
Query: 213 QWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQS-----------KGDDEEASI 261
+ ++ ++ +E K + QL+KE++ + +G +E+ I
Sbjct: 512 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 571
Query: 262 LQRKIDDLEERANELDKARTSTIS 285
++ +I DL+ ++ + + TIS
Sbjct: 572 MKNEIQDLQT---KMRRRKACTIS 592
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 30.6 bits (70), Expect = 0.94
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKA 279
++ KE+D A + E+A+ L+ L E+ + K+
Sbjct: 405 EVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS 442
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 29.9 bits (68), Expect = 1.5
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVEE 301
++ KE+D A + E+A+ L+ L E+ + K+ V
Sbjct: 405 EVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE--------KQGQENSEVTV 456
Query: 302 AEKAIMVS 309
+ A++VS
Sbjct: 457 DDIAMVVS 464
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 27.2 bits (60), Expect = 5.5
Identities = 5/43 (11%), Positives = 15/43 (34%)
Query: 236 YAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDK 278
++ ++ + A + L + D LE ++ +
Sbjct: 97 EQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNRR 139
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 27.6 bits (61), Expect = 5.7
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 234 YNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDK 278
++ Q ++ + A + L + D LE ++ +
Sbjct: 122 GQEQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNRR 166
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 28.4 bits (63), Expect = 5.7
Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 193 LPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKE 246
P ER W DV ++ E P N + KE
Sbjct: 85 SPIVGIAERIKNRDP---KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKE 135
>4dv8_A Lethal factor; endopeptidase, zinc dependent, hydrolase; HET: 0LX;
1.63A {Bacillus anthracis} PDB: 1yqy_A* 2l0r_A
Length = 526
Score = 28.0 bits (61), Expect = 6.2
Identities = 12/116 (10%), Positives = 42/116 (36%)
Query: 167 EFISNQEFTESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREK 226
E + + S+F+ +++ + + + +D + + KE+ N + E+
Sbjct: 67 ELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFL 126
Query: 227 ERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTS 282
++ K Y + + + + + +R I +++ ++ +
Sbjct: 127 KKLKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLY 182
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 28.0 bits (63), Expect = 6.4
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 207 QNGMMYQWKEEDVEQ 221
QN WK E V+
Sbjct: 386 QNAARLGWKAEKVDA 400
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 7.1
Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 192 ALPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQ 251
E++ + E++ KEE+++ + E N K +L Q
Sbjct: 1072 LHEQIAELQAQIAELKA--QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 252 SKGDDEEASI--LQRKIDDLEERANELDKARTSTISSISYINNRNRRKNVEEAEK 304
+ E+A+ +++ DL E L T+ + + ++ +K
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 27.5 bits (61), Expect = 8.9
Identities = 29/177 (16%), Positives = 70/177 (39%), Gaps = 30/177 (16%)
Query: 196 KDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYA-------MKKTQLMKERD 248
K + K K++++ + E+ ++ +E++ + + K L K ++
Sbjct: 978 KVTADGKIKKMEDDI--LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Query: 249 MAQSKGDDEEASI---------LQRKIDDLEERANELDKARTSTISSISYINNRNRRKNV 299
+S + E + L++ LE +++L + + I+ + + +K
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK-- 1093
Query: 300 EEAEKAIMVSCCCCCSGFSYRSVKSSASRKVIE----YIETKEELNRIRLSRFKMEK 352
E E ++ S K++A +K+ E + +E+L + +R K EK
Sbjct: 1094 -EEELQAALA-----RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 28.0 bits (62), Expect = 7.2
Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 193 LPTKDEVERKSKEIQNGMMYQWKEEDVEQIVREKERFKPTPYNYAMKKTQLMKE 246
P ER W DV ++ E P N + KE
Sbjct: 85 SPIVGIAERIKNRDP---KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKE 135
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 27.6 bits (62), Expect = 8.4
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 207 QNGMMYQWKEEDVEQIVRE 225
QN M QW ++ + ++
Sbjct: 394 QNSMRLQWTHQETDMKLQN 412
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 27.3 bits (60), Expect = 8.5
Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 197 DEVERKSKEIQNGMMYQWKEEDVEQIVREKERF----KPTPYNYAMKKTQLMKERDMAQS 252
+E+ R + ++ K E KE+ + + L K
Sbjct: 4 NEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAF--- 60
Query: 253 KGDDEEASILQRKIDDLEERANELDKARTSTISSI 287
+ + + Q +++ + A EL++ ++
Sbjct: 61 ---ESDLAAHQDRVEQIAAIAQELNELDYHDAVNV 92
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 27.6 bits (62), Expect = 9.4
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 207 QNGMMYQWKEEDVEQ 221
QN W E+V+
Sbjct: 386 QNSERLSWTAEEVDS 400
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.387
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,863,071
Number of extensions: 344379
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 45
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.8 bits)