RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14634
         (388 letters)



>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein
           RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
          Length = 132

 Score =  106 bits (266), Expect = 1e-28
 Identities = 49/82 (59%), Positives = 64/82 (78%)

Query: 129 IGEISGVCETGKIYSLGKTRTNKGLKLRHGNSERVFRLEFISNQEFTESEFIRWKDQCMT 188
           + EI+GV ET K+Y LG TRTNKGL+LRHGN +RVFRLEF+SNQEFTESEF++WK+   +
Sbjct: 50  VAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFS 109

Query: 189 EGVALPTKDEVERKSKEIQNGM 210
            G+ LPT DE+ +K   I+  +
Sbjct: 110 AGMQLPTLDEINKKELSIKEAL 131



 Score = 72.9 bits (179), Expect = 2e-16
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 334 IETKEELNRIRLSRFKMEKLVHLPIFGQIVIGCFVRIGIGNNTGIPLYRVSE 385
           +   EELNR+RLSR K+E+  H+P F + V GCFVRIGIGN+   P+YRV+E
Sbjct: 1   VSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE 52


>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 26.6 bits (58), Expect = 1.5
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 308 VSCCCCCSGFSYRSVKSSASRKVIE---YIETKEELNRIRLSRFK 349
           VS C  C GF  RS++ +           I  K   NR +  R +
Sbjct: 16  VSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ 60


>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 269

 Score = 27.5 bits (60), Expect = 2.4
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 248 DMAQSKGDDEEASILQRKIDDLEER----ANELDKARTSTISSISYINNRNRRKNVEEAE 303
           D        E+  + ++K+ ++E       NE+D     +     +I+     + V   +
Sbjct: 3   DSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPS-LDFQFISQYRLTQGVIPPD 61

Query: 304 KAIMVSCCCCCSG 316
                 C C   G
Sbjct: 62  PNFQSGCNCSSLG 74


>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus
           subtilis [TaxId: 1423]}
          Length = 109

 Score = 25.8 bits (56), Expect = 4.7
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 242 QLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTS 282
           +++   +  +      +  IL +K   ++E    +D+   S
Sbjct: 67  EMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS 107


>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 124

 Score = 25.7 bits (56), Expect = 5.3
 Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 23/125 (18%)

Query: 197 DEVERKSKEIQNGMMYQWKEEDVEQIVREKERF----KPTPYNYAMKKTQLMKERDMAQS 252
           +E+ R  +       ++ K    E     KE+          +    +  L K       
Sbjct: 4   NEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAF--- 60

Query: 253 KGDDEEASILQRKIDDLEERANELDKARTSTISSI----SYINNR---------NRRKNV 299
              + + +  Q +++ +   A EL++       ++      I ++          RR+ +
Sbjct: 61  ---ESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL 117

Query: 300 EEAEK 304
           E  EK
Sbjct: 118 ERMEK 122


>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 106

 Score = 25.5 bits (56), Expect = 5.8
 Identities = 17/110 (15%), Positives = 45/110 (40%), Gaps = 22/110 (20%)

Query: 175 TESEFIRWKDQCMTEGVALPTKDEVERKSKEIQNGMMY-QWKEEDVEQIVREKERFKPTP 233
            +  F RW +  + +G +  T++E++  + E++N +   +W  ED+++ +          
Sbjct: 18  AQGLFQRWTE--LLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETIS--------- 66

Query: 234 YNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERANELDKARTST 283
                     + E +  +   D  E SI +  I    +   ++    +++
Sbjct: 67  ----------IVEANPRKFNLDATELSIRKAFITSTRQIVRDMKDQMSAS 106


>d1f35a_ b.94.1.1 (A:) Olfactory marker protein {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 162

 Score = 25.3 bits (55), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)

Query: 160 SERVFRLEFISNQEFTESEFIRWK 183
           +E V+RL+FI  Q+     F  W 
Sbjct: 48  AESVYRLDFIQQQKLQ---FDHWN 68


>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus
           anthracis, Dlp-1 [TaxId: 1392]}
          Length = 142

 Score = 25.0 bits (54), Expect = 9.9
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 19/119 (15%)

Query: 163 VFRLEFISNQEFTESEFIRWKDQC--------MTEGVALPTKDEVERKSKEIQNGMMYQW 214
           V   +F +  E  E  +                  G  + T  E    S  IQ     + 
Sbjct: 27  VKGPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISS-IQEAAYGET 85

Query: 215 KEEDVEQIVREKERFKPTPYNYAMKKTQLMKERDMAQSKGDDEEASILQRKIDDLEERA 273
            E  VE I++          +Y M   +L K  ++AQ+  D+  + +L     +LE+ A
Sbjct: 86  AEGMVEAIMK----------DYEMMLVELKKGMEIAQNSDDEMTSDLLLGIYTELEKHA 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,459,888
Number of extensions: 68531
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 26
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)