BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14635
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
Query: 1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
MFL+ +F + S ++ E TG LR+TG S+ L+SV +AFF A+L+PIPALR
Sbjct: 498 MFLLGHSFTETRS-----NIPFKERTGDCLRRTGTSVALTSVNNMIAFFMAALVPIPALR 552
Query: 61 VFNLQLAILILFNMFVLLLVYPAI 84
F+LQ A++++FN + LL++PAI
Sbjct: 553 AFSLQAAVVVVFNFAMALLIFPAI 576
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
+FL+ F++ T +N+ + + TG L++TG S+ L+S+ AFF A+LIPIPALR
Sbjct: 515 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 571
Query: 61 VFNLQLAILILFNMFVLLLVYPAI 84
F+LQ A++++FN ++LL++PAI
Sbjct: 572 AFSLQAAVVVVFNFAMVLLIFPAI 595
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
+FL+ F++ T +N+ + + TG L++TG S+ L+S+ AFF A+LIPIPALR
Sbjct: 501 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 557
Query: 61 VFNLQLAILILFNMFVLLLVYPAI 84
F+LQ A++++FN ++LL++PAI
Sbjct: 558 AFSLQAAVVVVFNFAMVLLIFPAI 581
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
+FL+ F++ T +N+ + + TG L++TG S+ L+S+ AFF A+LIPIPALR
Sbjct: 515 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 571
Query: 61 VFNLQLAILILFNMFVLLLVYPAI 84
F+LQ A++++FN ++LL++PAI
Sbjct: 572 AFSLQAAVVVVFNFAMVLLIFPAI 595
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
+FL+ F K ++ EC LR TG S+ L+SV VAFF A+L+PIPALR
Sbjct: 471 IFLLAHAFTKAPPDTPLPE-RMGEC----LRSTGTSVALTSVNNMVAFFMAALVPIPALR 525
Query: 61 VFNLQLAILILFNMFVLLLVYPAI 84
F+LQ AI++ N ++LV+PAI
Sbjct: 526 AFSLQAAIVVGCNFAAVMLVFPAI 549
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 22 LNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVY 81
L E G L++TG S++L+S+ AF A+L+PIPALR F+LQ AI++ ++LV+
Sbjct: 487 LQERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALRAFSLQAAIVVGCTFVAVMLVF 546
Query: 82 PAI 84
PAI
Sbjct: 547 PAI 549
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
Query: 1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
+F++T +A+ + Q T ++L+K G SI+ S+ + +FF+A+ IP+PAL+
Sbjct: 506 IFMLTAAYAESNRREQ---------TKLILKKVGPSILFSACSTAGSFFAAAFIPVPALK 556
Query: 61 VFNLQLAILILFNMFVLLLVYPAI 84
VF LQ AI++ N+ LLV+PA+
Sbjct: 557 VFCLQAAIVMCSNLAAALLVFPAM 580
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 15 NQFDSVKL---NECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILIL 71
N D VKL + I++R+TG+SI+ +S+ ++F + +L+PIPALR F Q +IL+
Sbjct: 741 NYRDVVKLAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLT 800
Query: 72 FNMFVLLLVYPAI 84
FN +L +YPAI
Sbjct: 801 FNFIAILTIYPAI 813
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
+F++ +T Y + L++ G VL + S+ LSS ++VAFF L +PA+
Sbjct: 702 IFILVQT---YQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVPAVH 758
Query: 61 VFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLMTSDEEEDEHTSSACKL 120
F+L + +L + + I C+V SLLG D+ +E C +
Sbjct: 759 TFSLFAGMAVLIDFLL------QITCFV--------SLLGLDI---KRQEKNRLDVVCCV 801
Query: 121 KSYSEF-------SC--RYLARQHARLITRPGVKMIVVFGFIGVLIASVS 161
+ + SC R+ +A L+ + ++ IV+ F+GVL S++
Sbjct: 802 QGAEDGAGVQASESCLFRFFKNSYAPLLLKDWMRPIVIAVFVGVLSFSIA 851
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
+F++ +T Y + L++ G +L + ++ LSS ++ AFF +L +PA+
Sbjct: 702 IFILVQT---YQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGALSSMPAVH 758
Query: 61 VFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLMTSDEEEDEHTSSACKL 120
F+L + +L + + I C+V SLLG D+ +E H C +
Sbjct: 759 TFSLFAGMAVLIDFLL------QITCFV--------SLLGLDI---KRQEKNHLDILCCV 801
Query: 121 KSYSE---------FSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVS 161
+ + + R+ A L+ + ++ IVV F+GVL SV+
Sbjct: 802 RGADDGQGSHASESYLFRFFKNYFAPLLLKDWLRPIVVAVFVGVLSFSVA 851
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 11 YTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILI 70
Y + L++ G VL + S+ LSS ++VAFF +L +PA+ F+L A L
Sbjct: 709 YQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSL-FAGLA 767
Query: 71 LFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLMTSDEEEDEHTSSACKLKSYSEF---- 126
+F F+L I C+V SLLG D+ +E C ++ +
Sbjct: 768 VFIDFLL-----QITCFV--------SLLGLDI---KRQEKNRLDIFCCVRGAEDGTSVQ 811
Query: 127 ---SC--RYLARQHARLITRPGVKMIVVFGFIGVLIASVS 161
SC R+ ++ L+ + ++ IV+ F+GVL S++
Sbjct: 812 ASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIA 851
>sp|Q8CIP5|DISP2_MOUSE Protein dispatched homolog 2 OS=Mus musculus GN=Disp2 PE=2 SV=1
Length = 1345
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 13 SKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILF 72
S+ Q S + G + G +++S + S AF+ + L +PA+R F L + +L
Sbjct: 524 SRGQVPSGGMPHRVGRTMHHFGYLLLVSGLTTSAAFYGSYLSRLPAVRCFALFMGTAVLV 583
Query: 73 NMFVLLLVYPA 83
+M + LL PA
Sbjct: 584 HMGLTLLWLPA 594
>sp|A7MBM2|DISP2_HUMAN Protein dispatched homolog 2 OS=Homo sapiens GN=DISP2 PE=2 SV=2
Length = 1401
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 13 SKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILF 72
SK+Q S L + G + G +++S + S AF+++ L +PA+R L + +L
Sbjct: 569 SKSQLPSGGLAQRVGRTMHHFGYLLLVSGLTTSAAFYASYLSRLPAVRCLALFMGTAVLV 628
Query: 73 NMFVLLLVYPA 83
++ + L+ PA
Sbjct: 629 HLALTLVWLPA 639
>sp|Q6R5J2|DISP1_DANRE Protein dispatched homolog 1 OS=Danio rerio GN=disp1 PE=2 SV=1
Length = 1464
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 10 KYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAIL 69
YT ++ +S +L+E I L+ LS+ ++S + AF++ + I A+R F +
Sbjct: 564 NYTKFDKPNS-ELSETVSITLQHAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTA 622
Query: 70 ILFNMFVLLLVYPAI 84
IL N +++ PA+
Sbjct: 623 ILVNYILMVTWLPAV 637
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2
Length = 1359
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 27 GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 84
G L + S++L S+ +++ FF +L P+PA+R F L + ++ + + + + A+
Sbjct: 737 GRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVAL 794
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1
SV=1
Length = 1331
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 27 GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 84
G L S++L S+ +++ FF +L P+PA+R F L + I+ + + + + A+
Sbjct: 737 GRTLGSVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAIILDFLLQMTAFVAL 794
>sp|Q96F81|DISP1_HUMAN Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=2 SV=3
Length = 1524
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 16 QFD--SVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFN 73
+FD + +E I L+ LS+ ++S + AF++ + I A+R F + IL N
Sbjct: 585 KFDKPHAETSETVSITLQHAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVN 644
Query: 74 MFVLLLVYPAI 84
+++ PA+
Sbjct: 645 YVLMVTWLPAV 655
>sp|Q3TDN0|DISP1_MOUSE Protein dispatched homolog 1 OS=Mus musculus GN=Disp1 PE=1 SV=2
Length = 1521
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 16 QFDS--VKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFN 73
+FD + +E + L+ LS+ ++S + AF++ + I A+R F + IL N
Sbjct: 584 KFDKPRAETSEAVSVTLQHAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVN 643
Query: 74 MFVLLLVYPAI 84
+++ PA+
Sbjct: 644 YVLMVTWLPAV 654
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1
Length = 1333
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 27 GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 84
G L S++L S+ +++ FF +L +PA+R F L + I+F+ + + + A+
Sbjct: 737 GRTLGSVAPSMLLCSLSEAICFFLGALTSMPAVRTFALTSGLAIIFDFLLQMTAFVAL 794
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans
GN=ncr-1 PE=1 SV=2
Length = 1383
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 2 FLITKTFAK------YTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP 55
F++ K +A+ Y S +Q E G+V+ T ++ SS+ + +FF
Sbjct: 714 FMVVKYYAQQRVSMPYMSPDQ-----CPEIVGMVMAGTMPAMFSSSLGCAFSFFIGGFTD 768
Query: 56 IPALRVFNLQLAILILFNMFVLLLVYPAIECW 87
+PA+R F L + +L ++ + ++ A+ W
Sbjct: 769 LPAIRTFCLYAGLAVLIDVVLHCTIFLALFVW 800
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1
Length = 1170
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 36 SIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 84
SI++S +C++ F A+ + +PA+ F + + ++FN + L Y +I
Sbjct: 666 SILMSLLCQTGCFLIAAFVTMPAVHNFAIYSTVSVIFNGVLQLTAYVSI 714
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,527,846
Number of Sequences: 539616
Number of extensions: 1746821
Number of successful extensions: 5897
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5863
Number of HSP's gapped (non-prelim): 36
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)