Query psy14635
Match_columns 162
No_of_seqs 120 out of 659
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 16:45:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqp_A Probable secdf protein- 97.7 8E-05 2.7E-09 68.2 8.5 71 21-91 358-428 (741)
2 3aqp_A Probable secdf protein- 97.1 0.0012 4E-08 60.4 7.9 72 21-92 656-727 (741)
3 4dx5_A Acriflavine resistance 96.8 0.0093 3.2E-07 56.2 11.5 72 21-92 426-500 (1057)
4 3ne5_A Cation efflux system pr 96.1 0.011 3.8E-07 55.6 7.4 71 21-91 441-514 (1054)
5 2v50_A Multidrug resistance pr 95.9 0.007 2.4E-07 57.0 5.0 71 21-91 426-499 (1052)
6 4dx5_A Acriflavine resistance 95.8 0.02 6.9E-07 53.8 7.6 72 21-92 959-1033(1057)
7 2v50_A Multidrug resistance pr 95.6 0.024 8.1E-07 53.4 7.1 71 21-91 957-1030(1052)
8 3ne5_A Cation efflux system pr 95.1 0.05 1.7E-06 51.2 7.6 71 21-91 975-1048(1054)
9 1rij_A E6APN1 peptide; Trp-CAG 9.5 1.4E+02 0.0048 14.8 1.3 15 22-36 2-16 (26)
10 2jby_A M11L protein; apoptosis 7.2 1.8E+02 0.0061 20.7 1.5 22 22-43 77-98 (145)
No 1
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=97.74 E-value=8e-05 Score=68.16 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635 21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA 91 (162)
Q Consensus 21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR 91 (162)
+.++.+.+++++++.+|+.|++|++++|+.-.+.+.|.+|.|++..+++++++++..+++.|+++.+-.+|
T Consensus 358 ~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~ 428 (741)
T 3aqp_A 358 KLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADR 428 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999886654
No 2
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=97.10 E-value=0.0012 Score=60.44 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy14635 21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAA 92 (162)
Q Consensus 21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR~ 92 (162)
+.++.+.+++++.+..++.|++|++++|+.-.++..+.++.|++-.++++++..+..+++.|+++.+-++|+
T Consensus 656 ~~~eav~~a~~~~~~~il~Tsltt~~g~~~L~~~g~~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~ 727 (741)
T 3aqp_A 656 PYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRR 727 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 688999999999999999999999999999999999999999999999999999999999999998866543
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=96.81 E-value=0.0093 Score=56.16 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy14635 21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAA 92 (162)
Q Consensus 21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~---~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR~ 92 (162)
+..+.+.++.++.+.+|+.|++|++++|+.=.+.+ -+..+.|++..++++++.++..+|+.|+++.+-.++.
T Consensus 426 ~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~~~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~ 500 (1057)
T 4dx5_A 426 PPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPI 500 (1057)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 67889999999999999999999999999988887 6778999999999999999999999999999877654
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=96.13 E-value=0.011 Score=55.64 Aligned_cols=71 Identities=7% Similarity=0.046 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635 21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA 91 (162)
Q Consensus 21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~---~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR 91 (162)
+..+-+.++.++.++.++.|++|++++|+.=.+.+ -+..+.|++-.++++++.++..+|+.|+++.+-.++
T Consensus 441 ~~~~a~~~a~~~~~~~i~~s~ltt~~~f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~ 514 (1054)
T 3ne5_A 441 TRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRG 514 (1054)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHHTTGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777888999999999999999999999888877 677899999999999999999999999999986654
No 5
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=95.92 E-value=0.007 Score=57.04 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=65.3
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635 21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA 91 (162)
Q Consensus 21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~---Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR 91 (162)
+..+.+.++.++.+.+|++|++|++++|+.-.+++. +..+.|++..++++++.++..+|+.|+++++-.++
T Consensus 426 ~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~~~~~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~ 499 (1052)
T 2v50_A 426 SPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKP 499 (1052)
T ss_dssp CHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 678889999999999999999999999999999988 48899999999999999999999999999875543
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=95.80 E-value=0.02 Score=53.85 Aligned_cols=72 Identities=13% Similarity=0.032 Sum_probs=66.1
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy14635 21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAA 92 (162)
Q Consensus 21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~---~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR~ 92 (162)
+.++-+.++.++.+..|++|++|++++|+.=.+.+ .|.++.|++-.+.++++.+++.+++-|+++.+-+++.
T Consensus 959 ~~~~Ai~~a~~~~~rpil~t~ltt~~g~~pl~~~~g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~ 1033 (1057)
T 4dx5_A 959 GLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF 1033 (1057)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77889999999999999999999999999988885 8999999999999999999999999999998866543
No 7
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=95.56 E-value=0.024 Score=53.44 Aligned_cols=71 Identities=8% Similarity=0.006 Sum_probs=62.4
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635 21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA 91 (162)
Q Consensus 21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~---Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR 91 (162)
+.++.+.++.++.+..|++|++|++++|+.-.+++- +..+.|++-.+.++++..+..+++.|+++.+-+++
T Consensus 957 ~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~~~~~g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 957 GIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHTCCSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCChhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999999999999999999888877 88999999999999999999999999999875543
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=95.06 E-value=0.05 Score=51.15 Aligned_cols=71 Identities=8% Similarity=-0.069 Sum_probs=64.1
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635 21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA 91 (162)
Q Consensus 21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~---~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR 91 (162)
+..+-+.++.++.+..|++|++|++++|+.=.+.+ .+..+.|++-.+.++++.++..+++-|+++.+-.+|
T Consensus 975 ~~~~Ai~~a~~~~~rpil~t~ltti~g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~~ 1048 (1054)
T 3ne5_A 975 KLDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLH 1048 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTTT
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCChHHhccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888899999999999999999999988884 788999999999999999999999999999886544
No 9
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=9.50 E-value=1.4e+02 Score=14.85 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHhHHH
Q psy14635 22 LNECTGIVLRKTGLS 36 (162)
Q Consensus 22 ~~~ri~~~l~~~gps 36 (162)
+.|-++.-+++-|||
T Consensus 2 lqellgqwlkdggps 16 (26)
T 1rij_A 2 LQELLGQWLKDGGPS 16 (26)
T ss_dssp HHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 356677778887876
No 10
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=7.24 E-value=1.8e+02 Score=20.73 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHH
Q psy14635 22 LNECTGIVLRKTGLSIILSSVC 43 (162)
Q Consensus 22 ~~~ri~~~l~~~gpsi~~ts~t 43 (162)
+++-++-+++++.||+-+.+++
T Consensus 77 vkn~l~~~l~D~rPSVkLAtis 98 (145)
T 2jby_A 77 IKNTLTFALRDASPSVKLATLT 98 (145)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHH
Confidence 4556677788888888777764
Done!