RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14635
         (162 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.9 bits (77), Expect = 0.020
 Identities = 24/120 (20%), Positives = 33/120 (27%), Gaps = 29/120 (24%)

Query: 27  GIVLRKTGLSIILSSVCKSVAFFSASL---IPIPALRVFNL-QLAILILFNMFVLLLVYP 82
               R     + LS           SL   + +P    F   QL        F  +L  P
Sbjct: 3   AYSTR----PLTLSH---------GSLEHVLLVPTASFFIASQLQ-----EQFNKILPEP 44

Query: 83  AIECWVGSAAPKDQ-SLLGEDL-MTSDEEEDEHTSSACKL--KSYSEFSCRYLARQ--HA 136
                     P     L+G+ L   S   E        ++     +EF   YL     HA
Sbjct: 45  TEGFA-ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103


>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer
          complex, cytochrome BC1 complex,
          mitochondrialtransmembrane complex; HET: M3L SUC 6PH
          UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus}
          SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X*
          1ezv_X* 3cxh_J*
          Length = 127

 Score = 25.2 bits (56), Expect = 6.2
 Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)

Query: 12 TSKNQFDSVKLNECT 26
          TSKNQF  +KLN  T
Sbjct: 74 TSKNQF-FLKLNSVT 87


>1bc4_A Ribonuclease, RC RNAse; hydrolase, phosphoric diester, cytotoxic
           protein, sialic acid binding lectin; HET: PCA; NMR {Rana
           catesbeiana} SCOP: d.5.1.1 PDB: 1km8_A 1km9_A 1m07_A
          Length = 111

 Score = 24.8 bits (54), Expect = 8.1
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 118 CKLKSYSEFSCRYLARQHARLIT 140
           C   S +   C Y +R     I 
Sbjct: 71  CTRTSITPRPCPYSSRTETNYIC 93


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0787    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,278,116
Number of extensions: 121387
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 8
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)