RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14635
         (162 letters)



>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 124

 Score = 24.7 bits (53), Expect = 4.6
 Identities = 7/48 (14%), Positives = 17/48 (35%)

Query: 98  LLGEDLMTSDEEEDEHTSSACKLKSYSEFSCRYLARQHARLITRPGVK 145
           L+G  +  +D   +  +++    K     +   L     ++   P V 
Sbjct: 66  LIGMSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVA 113


>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
           putative coronavirus nsp2) {Transmissible
           gastroenteritis virus [TaxId: 11149]}
          Length = 299

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 7   TFAKYTSKNQFDSVKLNECTGIVLRKTGLSI--ILSSVCKSVAFFSASLI 54
           ++  +   N F  +   +   ++  KTG S+  +L S+ +    F    I
Sbjct: 228 SYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVRLNKGFGGRTI 277


>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
           (Rana catesbeiana) [TaxId: 8400]}
          Length = 111

 Score = 24.0 bits (52), Expect = 6.1
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 118 CKLKSYSEFSCRYLARQHARLIT 140
           C   S +   C Y +R     I 
Sbjct: 71  CTRTSITPRPCPYSSRTETNYIC 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 540,310
Number of extensions: 21033
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 4
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.2 bits)