Query psy14636
Match_columns 447
No_of_seqs 131 out of 1117
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:46:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3670 Lignostilbene-alpha,be 100.0 3E-109 6E-114 820.9 28.2 410 11-444 37-490 (490)
2 PLN02258 9-cis-epoxycarotenoid 100.0 1E-105 2E-110 846.7 39.0 415 3-444 122-585 (590)
3 PF03055 RPE65: Retinal pigmen 100.0 1E-106 3E-111 851.2 31.0 425 5-442 10-486 (486)
4 PLN02491 carotenoid 9,10(9',10 100.0 4E-104 9E-109 833.0 35.4 413 4-444 61-538 (545)
5 PLN02969 9-cis-epoxycarotenoid 100.0 3.4E-98 7E-103 798.2 38.6 424 4-442 69-610 (610)
6 KOG1285|consensus 100.0 9.4E-66 2E-70 535.1 29.3 428 5-444 29-577 (582)
7 KOG1285|consensus 99.7 3.6E-18 7.9E-23 179.1 4.9 242 6-253 118-405 (582)
8 COG3823 Glutamine cyclotransfe 91.7 0.41 9E-06 44.6 5.9 166 42-241 39-217 (262)
9 PF13570 PQQ_3: PQQ-like domai 60.4 10 0.00023 25.1 2.8 25 117-141 16-40 (40)
10 PF02239 Cytochrom_D1: Cytochr 45.7 81 0.0017 32.3 7.8 74 334-425 45-118 (369)
11 PRK13680 hypothetical protein; 45.0 21 0.00046 30.1 2.8 61 356-416 46-109 (117)
12 cd01262 PH_PDK1 3-Phosphoinosi 39.0 65 0.0014 26.0 4.6 35 121-155 15-50 (89)
13 PF14269 Arylsulfotran_2: Aryl 34.7 3E+02 0.0064 27.3 9.6 109 322-445 140-267 (299)
14 PF05096 Glu_cyclase_2: Glutam 32.6 76 0.0016 31.0 4.8 37 117-153 94-131 (264)
15 PF02239 Cytochrom_D1: Cytochr 30.9 79 0.0017 32.3 5.0 87 324-428 272-360 (369)
16 TIGR02276 beta_rpt_yvtn 40-res 26.9 1.3E+02 0.0029 19.3 4.1 29 122-150 3-32 (42)
17 PF14583 Pectate_lyase22: Olig 25.1 90 0.002 32.2 4.1 58 351-415 166-224 (386)
18 PRK11138 outer membrane biogen 23.1 3.4E+02 0.0074 27.5 8.1 115 45-172 262-380 (394)
19 PF05096 Glu_cyclase_2: Glutam 22.8 2E+02 0.0043 28.1 5.8 36 389-426 129-168 (264)
20 PF14839 DOR: DOR family 22.3 48 0.001 31.2 1.4 15 386-400 2-16 (216)
21 CHL00108 psbJ photosystem II p 22.3 30 0.00065 23.3 0.0 12 15-26 5-16 (40)
22 KOG4105|consensus 21.7 36 0.00078 28.5 0.4 43 133-175 23-69 (141)
No 1
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.8e-109 Score=820.88 Aligned_cols=410 Identities=28% Similarity=0.413 Sum_probs=349.4
Q ss_pred eeE-EeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecC-cEEEEEEEecchHHHHHHhcCCceeeecc
Q psy14636 11 QGT-VEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSG-LVTYQCKFIKSESYIKNHAARRIVVTGFG 88 (447)
Q Consensus 11 ~~~-v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G-~v~y~~R~v~T~~~~~e~~~g~~~~~~fg 88 (447)
.+. |+|+||++|+|||||||||++.+++...+||||||||||+|.|.|| +|+|+||||||++|++|++||+++|++++
T Consensus 37 ~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~g~~ae~~Ag~~l~~g~~ 116 (490)
T COG3670 37 DLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQGYLAENEAGKPLWGGLG 116 (490)
T ss_pred ccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeeceeehhhhcCcceecccc
Confidence 565 8999999999999999999999999999999999999999999995 99999999999999999999999999988
Q ss_pred CCCCCC-CcchHHHHHHhhcCCCCCCceeeeeecCCEEEEEecCCceEEeCCCCCceeeeeecCCCCCCCCcCccceecC
Q psy14636 89 TRFVPD-PCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTS 167 (447)
Q Consensus 89 ~~~~~~-p~~~~~~~~~~~~~~~~~~aNt~v~~~gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~~l~~~~~tAHpk~Dp 167 (447)
+...+. +..++ -...+|.|||||+.|+++|+||||+|.||+|||.||+|+|+.+|+|...+.+||||||+||
T Consensus 117 ~~~p~~~~~~~~-------~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp~tL~TlG~~~~~g~~~g~~fsAHPkvDp 189 (490)
T COG3670 117 ETQPPGVRPHSR-------TGDLKNAANTSVIMHGDELLALWEGGSPYRLDPDTLETLGKEDFGGDPLGGPFSAHPKVDP 189 (490)
T ss_pred ccCCCCcCcCcc-------ccccccCCccceEeehhHHHHHHhcCCccccChhHhhhcChhhcCCCCCCCccccCccCCC
Confidence 743221 11111 0115788999999999999999999999999999999999999999644678999999999
Q ss_pred -CCCEEEEecccCCCCCcEEEEE--------------ecC--CcCCCCcCCCC-----CCCCeecc-----cc-------
Q psy14636 168 -DGETFNLGVTLRPTGPRYCILQ--------------LND--AFSYPDLSHPP-----PPPPSLRF-----RD------- 213 (447)
Q Consensus 168 -tge~~~~~~~~~~~~~~~~~~~--------------~p~--~~hd~~~~~~~-----~~p~~~~~-----~~------- 213 (447)
|||++||+++.... .++++. +|. |+|||+ +|++ +.|+.+|. ..
T Consensus 190 ~tgel~~fg~s~~~~--~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa-~T~~y~If~~~Pv~~d~~p~ll~~~~~~~~~ 266 (490)
T COG3670 190 DTGELFNFGYSFALP--YLTYYVVDADGELRRTVDIPLPGPPMMHDFA-ITENYLIFFDLPVTFDPVPRLLGRPADGHAM 266 (490)
T ss_pred CCceEEEEEeccCCC--eeEEEEECCCCcEEEeeeeecCCCccceeee-ecCceEEEEeCcccccchhHHhcCcccccce
Confidence 99999999986542 344443 344 999999 8887 89999983 22
Q ss_pred -CCCCCceEEEEEECCCCCeEEEEEcCceeEEEeeeeeecCCCcEEEEEeeecCCchhhhhhHHHhhccCCCCcccccCC
Q psy14636 214 -DIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFR 292 (447)
Q Consensus 214 -~~~~~~t~~~vipR~~~~~v~~~~~~~~~~~H~~NAyE~~~g~Iv~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (447)
+-|+.||||+||||+++++|||||++|||+||+.||||++|+.|.+|+|++++.+... +..+.... .......+
T Consensus 267 ~~~pe~ptri~V~pR~g~~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~----~~~~~~~~-g~~~~~a~ 341 (490)
T COG3670 267 RWRPELPTRILVLPREGDSEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTL----DTLGEGPG-GDFRTLAP 341 (490)
T ss_pred eecCCCCcEEEEEccCCCCceeEEecCCeEEEEecceeecCCCcEEEEEEeeccccccc----cccccccc-ccccccCC
Confidence 1299999999999995468999999999999999999998779999999999874321 11111111 12223347
Q ss_pred CceEEEEEeCCCCCCCCCCcccceeecCCCcCCCccCCCCCCCccceEEEEecCCCCCCCCc---EEEEEeeCCceeEEc
Q psy14636 293 ARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGT---LIKVNVQNNTCKSWS 369 (447)
Q Consensus 293 ~~l~R~~idl~~g~~~~~~~~~~~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~~---i~k~D~~tg~~~~w~ 369 (447)
++|+||+|||++|+ +..+.+.+++||||+||+++.|++|||+|++...+....+++ |+|+|++||+.+.|+
T Consensus 342 ~~L~R~~lnl~tg~------v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~~tg~~~~~~ 415 (490)
T COG3670 342 PRLHRWTLNLKTGK------VAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDLETGTSQVYS 415 (490)
T ss_pred CcceEEEEccccch------hHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchhhcceeEEEeccCCcEEEEe
Confidence 99999999999996 668889999999999999999999999999876665555555 999999999999997
Q ss_pred -CCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCc--eEEEEEeCCCCCCCCCceeeccCCC
Q psy14636 370 -QKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE--LGRVNFTTPTPVPKCLHGWYFPHER 444 (447)
Q Consensus 370 -~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~--var~~l~lP~~vP~gfHG~w~~~~~ 444 (447)
++++|++||+|||||++++|||||||++|+|... ++|+|+||||+++++ |||++| |++||+||||+|++.++
T Consensus 416 ~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~-~~Sel~v~DA~~~~~epIa~l~L--p~~vP~gfHG~w~~~~~ 490 (490)
T COG3670 416 FGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDR-HASELLVFDAQRVTAEPIARLAL--PQRVPYGFHGNWVPTEE 490 (490)
T ss_pred cCCCCcccccccccCCCCCcCCCcEEEEEEEecCC-CcceEEEEecccCCCCcceEEec--ccccccccccccccccC
Confidence 8999999999999999999999999999999864 569999999999887 777777 99999999999998763
No 2
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=1.1e-105 Score=846.66 Aligned_cols=415 Identities=23% Similarity=0.361 Sum_probs=343.8
Q ss_pred CcccccceeeEEeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecCcEEEEEEEecchHHHHHHhcCCc
Q psy14636 3 NSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRI 82 (447)
Q Consensus 3 ~~e~~~~~~~~v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G~v~y~~R~v~T~~~~~e~~~g~~ 82 (447)
+.|+.....+.|+|+||+||+|||||||||+.+.+ ...+||||||||||+|+|+||+|+|+||||||++|++|+++||.
T Consensus 122 v~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p-~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~E~~agr~ 200 (590)
T PLN02258 122 VPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEP-VAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQERALGRP 200 (590)
T ss_pred ccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCC-CCCCccccCCceEEEEEECCCeEEEEeeeecchhHHHHHhcCCc
Confidence 45566666789999999999999999999976543 45689999999999999999999999999999999999999999
Q ss_pred eeee-ccCCCCC-CCcchHH--HH-HHhhcCC--CCCCceeeeeecCCEEEEEecCCceEEeCCC---CCceeeeeecCC
Q psy14636 83 VVTG-FGTRFVP-DPCASIF--QR-IATLFKP--GSDNTLVSVYPIQDQVYALGDSNYMHRIDPA---TLDTLGKIDLAG 152 (447)
Q Consensus 83 ~~~~-fg~~~~~-~p~~~~~--~~-~~~~~~~--~~~~aNt~v~~~gg~llAl~E~~~p~~lDp~---TLeT~g~~d~~~ 152 (447)
+|++ +|+.... ......+ .+ +...+.. .+++|||||++|+||||||||+|.||+||++ ||||+|++||+|
T Consensus 201 l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g 280 (590)
T PLN02258 201 VFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDG 280 (590)
T ss_pred ccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCC
Confidence 9985 7764211 0000000 11 0111211 4689999999999999999999999999654 999999999999
Q ss_pred CCCCCCcCccceecC-CCCEEEEecccCCCCCcEEEEEe--------------cC--CcCCCCcCCCC-----CCCCeec
Q psy14636 153 DVTILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCILQL--------------ND--AFSYPDLSHPP-----PPPPSLR 210 (447)
Q Consensus 153 ~l~~~~~tAHpk~Dp-tge~~~~~~~~~~~~~~~~~~~~--------------p~--~~hd~~~~~~~-----~~p~~~~ 210 (447)
+| ..+||||||+|| |||+++|+|++.. .+.+.++.+ |. |+|||+ +|++ +.|+.++
T Consensus 281 ~l-~~~ftAHPKvDP~TGel~~f~y~~~~-~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HDFa-iTenY~Vf~d~Pl~~~ 357 (590)
T PLN02258 281 QL-DSSMIAHPKVDPVTGELFALSYDVVK-KPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFA-ITENFVVIPDQQVVFK 357 (590)
T ss_pred cc-CcccccCceEcCCCCeEEEEEEeccC-CCcEEEEEECCCCCEEeeEEeeCCCCcccccee-ccCceEEEEccCceEc
Confidence 99 478999999999 9999999998643 245555443 22 999999 9998 8999998
Q ss_pred cccCC---------CCCceEEEEEECCCC--CeEEEEEcCceeEEEeeeeeecCC-CcEEEEEeeecCCchhhhhhHHHh
Q psy14636 211 FRDDI---------DMTSTIFHVLDKTNG--SVVHRFQADSFFYLHIINAYEDTN-DGIVVDICCYRNPAMLDCMYREAL 278 (447)
Q Consensus 211 ~~~~~---------~~~~t~~~vipR~~~--~~v~~~~~~~~~~~H~~NAyE~~~-g~Iv~D~~~~~~~~~~~~~~~~~~ 278 (447)
+.+|+ +++++||+||||+++ +.++||++|+||+||++||||+++ ++||+|.|++.+.... +...
T Consensus 358 ~~~~~~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~~----~~~~ 433 (590)
T PLN02258 358 LSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSI----FNES 433 (590)
T ss_pred HHHHhhCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEecccChhhh----cccc
Confidence 76654 899999999999975 468999999999999999999743 3799999998775311 1110
Q ss_pred hccCCCCcccccCCCceEEEEEeCCCCCCCCCCcccceeecC---CCcCCCccCCCCCCCccceEEEEecCCCCCCCCcE
Q psy14636 279 KNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICD---VGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTL 355 (447)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~~~~~~~~l~~---~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~~i 355 (447)
.....++|+||+|||++|+ ++++.+.+ .++|||+||++|.||+|||+|++..++ ...+++|
T Consensus 434 ---------~~~~~~~L~r~ridl~tg~------~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~-~~~~~gi 497 (590)
T PLN02258 434 ---------DESLRSVLSEIRLNLRTGE------STRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEP-WPKVSGF 497 (590)
T ss_pred ---------cccccceEEEEEEECCCCc------eeeeEeecCCCcccccceECHHHCCCccceEEEeccCC-CCCCCeE
Confidence 1233578999999999986 44555654 799999999999999999999977653 4457999
Q ss_pred EEEEeeCCceeEEc-CCCCCCCccEEeeCCCCCC-CCCeEEEEEEEeCCCCCceEEEEEecCCcCceEEEEEeCCCCCCC
Q psy14636 356 IKVNVQNNTCKSWS-QKDVYPSEPVFVATPNARK-EDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPK 433 (447)
Q Consensus 356 ~k~D~~tg~~~~w~-~~~~~~~EPvFVPrp~~~~-EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~var~~l~lP~~vP~ 433 (447)
+|+|++||+.+.|. ++++|+|||+||||+++.+ |||||||++|+|..++ +|+|+||||++|++|||++| |+|||+
T Consensus 498 vK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~EDDGylls~V~d~~~~-~SeL~IlDA~~l~~VArv~L--P~rVP~ 574 (590)
T PLN02258 498 AKVDLSTGEVKKYIYGEGRYGGEPFFVPRGSGSEAEDDGYILAFVHDEEKG-KSELQVVNAVNLELEATVKL--PSRVPY 574 (590)
T ss_pred EEEECCCCcEEEEECCCCccccCCEeccCCCCCcccCCcEEEEEEEECCCC-ceEEEEEeCCCCcccEEEEC--CCCCCC
Confidence 99999999998875 8999999999999999874 9999999999998644 69999999999999999999 999999
Q ss_pred CCceeeccCCC
Q psy14636 434 CLHGWYFPHER 444 (447)
Q Consensus 434 gfHG~w~~~~~ 444 (447)
||||+|++.++
T Consensus 575 GFHG~wv~~~~ 585 (590)
T PLN02258 575 GFHGTFISAED 585 (590)
T ss_pred cccccccCHHH
Confidence 99999998754
No 3
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=1.2e-106 Score=851.21 Aligned_cols=425 Identities=36% Similarity=0.654 Sum_probs=325.7
Q ss_pred ccccceeeEEeecCCCCCceEEEEeCCCCCc-cCCcceecccCCCCceEEEEEecCcEEEEEEEecchHHHHHHhcCCce
Q psy14636 5 EVDQPVQGTVEGVIPSWIDGVLIRNGPGSWN-VGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIV 83 (447)
Q Consensus 5 e~~~~~~~~v~G~iP~~L~Gt~~RnGP~~~~-~~~~~~~H~FDGdGmv~~~~~~~G~v~y~~R~v~T~~~~~e~~~g~~~ 83 (447)
|...+..++|+|+||+||+|||||||||+++ .++.++.||||||||||+|+|++|+|+|+||||+|++|++|+++|+.+
T Consensus 10 E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~~e~~~g~~~ 89 (486)
T PF03055_consen 10 EVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYKAEREAGRRL 89 (486)
T ss_dssp EE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHHHHHHHTSS-
T ss_pred ccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHHHHHhcCCce
Confidence 3436667999999999999999999999999 898999999999999999999999999999999999999999999999
Q ss_pred eee-ccCCCCCCCcchHHHHHHhh-c-CCCCCCceeeeeecCCEEEEEecCCceEEeCCCCCceeeeeecCCCCCCCCcC
Q psy14636 84 VTG-FGTRFVPDPCASIFQRIATL-F-KPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQT 160 (447)
Q Consensus 84 ~~~-fg~~~~~~p~~~~~~~~~~~-~-~~~~~~aNt~v~~~gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~~l~~~~~t 160 (447)
|++ ||+...++||.++| .+... . ...+|+|||||++|+|+||||||+|.||+|||+||||+|+++|++.+++..||
T Consensus 90 ~~g~~gt~~~~~~~~~~~-~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp~TLeT~g~~~~~~~l~~~~~t 168 (486)
T PF03055_consen 90 YRGEFGTVPLPDPCRNIF-RFPMPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELDPDTLETLGPFDFDGKLPGQPFT 168 (486)
T ss_dssp SC-TTTCTTCSTHHHHTC-HHTTS--GGGB-----SEEEEETTEEEEE-TTSEEEEEETTTCEEEEEEEGGGTSSTS---
T ss_pred ecccccccccCchhhhhh-hhccccccccCCCCceeeeEEECCEEEEEEcCCCCEEechhHhhhcCcccccccccCcccc
Confidence 866 88877678887753 11100 1 11789999999999999999999999999999999999999999999888999
Q ss_pred ccceecC-CCCEEEEecccCCC-CCcEEEEEecC-----------------CcCCCCcCCCC-----CCCCeeccccCC-
Q psy14636 161 SHPLTTS-DGETFNLGVTLRPT-GPRYCILQLND-----------------AFSYPDLSHPP-----PPPPSLRFRDDI- 215 (447)
Q Consensus 161 AHpk~Dp-tge~~~~~~~~~~~-~~~~~~~~~p~-----------------~~hd~~~~~~~-----~~p~~~~~~~~~- 215 (447)
||||+|| ||++|+|++++++. .+.+.+|+++. ++|||+ +|++ ++|+.+++.+++
T Consensus 169 AHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~-vT~~Y~V~~~~P~~~~~~~~~~ 247 (486)
T PF03055_consen 169 AHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFA-VTENYVVFPDNPLRFDPERLLL 247 (486)
T ss_dssp S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----E-E-SSEEEEEE-SEEE-HHHHHT
T ss_pred cCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCccccccc-ccCceEEEEECCeEECHHHHhh
Confidence 9999999 99999999987664 36777776522 899998 8988 889988765432
Q ss_pred -----------CCCceEEEEEECCCC-CeEEEEEcCceeEEEeeeeeecCCC--cEEEEEeeecCCchhhhhhHHHhhcc
Q psy14636 216 -----------DMTSTIFHVLDKTNG-SVVHRFQADSFFYLHIINAYEDTND--GIVVDICCYRNPAMLDCMYREALKNI 281 (447)
Q Consensus 216 -----------~~~~t~~~vipR~~~-~~v~~~~~~~~~~~H~~NAyE~~~g--~Iv~D~~~~~~~~~~~~~~~~~~~~~ 281 (447)
++++++|+||||+++ +.++||++++||+||++||||++|| +||+|+|+|++.+++..+.++++++.
T Consensus 248 g~~~~~~~~~~p~~~t~~~VipR~~~~~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~~~~~~~~~~~~~~~~~ 327 (486)
T PF03055_consen 248 GGSPIDCLKWDPERPTRFHVIPRDGGKSPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYDDPEFLDSFYLDNLRPD 327 (486)
T ss_dssp TCCTGGCEEE-TTS-EEEEEEETTTSCCCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEECSSS-CGCSCHHHHCC-
T ss_pred CCcccceEEECCCCCeEEEEEECcCCCceeEEEecCChhhccccceeecCCCceEEEEEEeecCCcccccccchhccccc
Confidence 899999999999998 7899999999999999999999874 99999999999888776666766532
Q ss_pred CCCCcccccCCCceEEEEEeCC--CCCCCCCCcccceeecCC-CcCCCccCCCCCCCccceEEEEecCCC---CCCCCcE
Q psy14636 282 HSTPRYAQMFRARPLRFRLDLA--SPRTAPTGKVRPSVICDV-GCETPRMNGQHQGRSYTYFYAISADID---RDNPGTL 355 (447)
Q Consensus 282 ~~~~~~~~~~~~~l~R~~idl~--~g~~~~~~~~~~~~l~~~-~~EfP~in~~~~gr~yry~Y~~~~~~~---~~~~~~i 355 (447)
. ......+.++|+||+||+. +++ +++++|++. ++|||+||+++.||+|||+|+++.... ..++++|
T Consensus 328 ~--~~~~~~~~~~l~R~~idl~~~~~~------~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~~~~~l 399 (486)
T PF03055_consen 328 G--MDFNSDSPGRLRRYRIDLDSKTGR------VSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERSPGFPFNGL 399 (486)
T ss_dssp H--HHCCCS-EEEEEEEEEETT--TCE------EEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS---EEEEE
T ss_pred c--cccccCCCceEEEEEEccccccce------eEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCCcCcCCCEE
Confidence 0 1123456799999999999 553 678899987 699999999999999999998765543 3468999
Q ss_pred EEEEeeCCceeEEc-CCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCc--eEEEEEeCCCCCC
Q psy14636 356 IKVNVQNNTCKSWS-QKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE--LGRVNFTTPTPVP 432 (447)
Q Consensus 356 ~k~D~~tg~~~~w~-~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~--var~~l~lP~~vP 432 (447)
+|+|++||+.+.|. +++++++||+|||||++.+|||||||++|+|..+ ++|+|+||||++|++ |||++| |++||
T Consensus 400 ~k~D~~tg~~~~~~~~~~~~~~EpvFVPr~~~~~EdDG~Ll~~v~~~~~-~~s~l~VlDA~~l~~GPvAr~~l--P~~vP 476 (486)
T PF03055_consen 400 VKVDLETGEVQRWSFGPGCFPGEPVFVPRPGGAEEDDGYLLSVVYDSDT-NRSELLVLDAKDLEEGPVARVEL--PHRVP 476 (486)
T ss_dssp EEEETTTTEEEEEE-TTTEEE--EEEEE-TTS-STT-EEEEEEEEETTT-TCEEEEEEETTTTCE--EEEEEE--SS---
T ss_pred EEEecccccceEEECCCCceecceEeccCCCCCCCCceEEEEEEEECCC-CccEEEEEeCCCCCcCceEEEEC--CCCCC
Confidence 99999999999998 6799999999999999999999999999999864 469999999999999 888888 99999
Q ss_pred CCCceeeccC
Q psy14636 433 KCLHGWYFPH 442 (447)
Q Consensus 433 ~gfHG~w~~~ 442 (447)
+||||+|+++
T Consensus 477 ~gfHG~w~~~ 486 (486)
T PF03055_consen 477 YGFHGSWVPE 486 (486)
T ss_dssp S-SEEEEEE-
T ss_pred CCccccccCC
Confidence 9999999874
No 4
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=4.1e-104 Score=833.00 Aligned_cols=413 Identities=21% Similarity=0.347 Sum_probs=337.2
Q ss_pred cccccceeeEEeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecCcEEEEEEEecchHHHHHHhcCCce
Q psy14636 4 SEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIV 83 (447)
Q Consensus 4 ~e~~~~~~~~v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G~v~y~~R~v~T~~~~~e~~~g~~~ 83 (447)
+|......+.|+|+||+||+|||||||||+++.+ ..++||||||||||+|+|+||+|+|+||||||++|++|+++|+.+
T Consensus 61 ~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~~-~~~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~ 139 (545)
T PLN02491 61 DETPPVKDLPVRGHLPECLNGEFVRVGPNPKFSP-VAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAK 139 (545)
T ss_pred ccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCCC-CCCCccccCCccEEEEEEcCCcEEEEeeeecccchhhhhhcCccc
Confidence 4544455688999999999999999999987544 567899999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCcchHHHHH-------HhhcC---C--CCCCceeeeeecCCEEEEEecCCceEEe---CCCCCceeeee
Q psy14636 84 VTGFGTRFVPDPCASIFQRI-------ATLFK---P--GSDNTLVSVYPIQDQVYALGDSNYMHRI---DPATLDTLGKI 148 (447)
Q Consensus 84 ~~~fg~~~~~~p~~~~~~~~-------~~~~~---~--~~~~aNt~v~~~gg~llAl~E~~~p~~l---Dp~TLeT~g~~ 148 (447)
|+.++. |.++|+.+ ...+. . .+++|||||++|+||||||||++.||+| ||.||||+|++
T Consensus 140 ~~~~~~------~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp~tLeT~G~~ 213 (545)
T PLN02491 140 FMKIGD------LKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLL 213 (545)
T ss_pred cccccc------ccccchhhhhhhhhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCCCCcceeeec
Confidence 875432 22222211 11111 0 2589999999999999999999999996 77999999999
Q ss_pred ecCCCCCCCCcCccceecC-CCCEEEEecccCCCCCcEEEE------------EecC--CcCCCCcCCCC-----CCCCe
Q psy14636 149 DLAGDVTILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCIL------------QLND--AFSYPDLSHPP-----PPPPS 208 (447)
Q Consensus 149 d~~~~l~~~~~tAHpk~Dp-tge~~~~~~~~~~~~~~~~~~------------~~p~--~~hd~~~~~~~-----~~p~~ 208 (447)
||+|.|. .+||||||+|| |||+++|+++..+....|.++ .+|. |+|||+ +|++ ++|+.
T Consensus 214 df~g~l~-~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i~l~~~~~~HDFa-iTeny~Vf~~~Pl~ 291 (545)
T PLN02491 214 DYDKRLK-HSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFA-ITENYAIFMDLPLY 291 (545)
T ss_pred ccCCccC-cccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEeecCCCceeeeeE-ecCCEEEEEECCcc
Confidence 9999996 78999999999 999999999874322233332 2333 999999 9998 89999
Q ss_pred eccccCC----------CCCceEEEEEECCCC--CeEEEEEcCceeEEEeeeeeecCCCcEEEEEeeecCCchhhhhhHH
Q psy14636 209 LRFRDDI----------DMTSTIFHVLDKTNG--SVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYRE 276 (447)
Q Consensus 209 ~~~~~~~----------~~~~t~~~vipR~~~--~~v~~~~~~~~~~~H~~NAyE~~~g~Iv~D~~~~~~~~~~~~~~~~ 276 (447)
+++.+|+ +++++||+||||+++ +.++||++|+||+||++|||||+| +||+|+|+|+++++.
T Consensus 292 ~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~~-~Ivvd~~~~~~~~~~------ 364 (545)
T PLN02491 292 FRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEED-EVVLITCRLENPDLD------ 364 (545)
T ss_pred cCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccCC-eEEEEEeccCCCccc------
Confidence 9876553 889999999999864 468999999999999999999887 999999999875321
Q ss_pred HhhccCCCCcccccCCCceEEEEEeCCCCCCCCCCcccceeecCCCcCCCccCCCCCCCccceEEEEecCCCCCCCCcEE
Q psy14636 277 ALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLI 356 (447)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~~~~~~~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~~i~ 356 (447)
........ ......++|+||||||++|+ ++++.|++.++|||+||++|.||+|||+|++..+. ...+++|+
T Consensus 365 ~~~~~~~~--~~~~~~~~l~r~ridl~tg~------~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~-~~~~~gl~ 435 (545)
T PLN02491 365 MVNGKVKE--KLENFGNELYEMRFNMKTGA------ASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDS-IAKVTGII 435 (545)
T ss_pred cccccccc--cccccCceEEEEEEECCCCc------eeeeccCCcccccCccCHHHCCCcccEEEEeccCC-ccCcCeEE
Confidence 00000000 01123578999999999985 66778888999999999999999999999987653 24579999
Q ss_pred EEEeeC----Ccee---------EE-cCCCCCCCccEEeeCCCC--CCCCCeEEEEEEEeCCCCCceEEEEEecCCcCc-
Q psy14636 357 KVNVQN----NTCK---------SW-SQKDVYPSEPVFVATPNA--RKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE- 419 (447)
Q Consensus 357 k~D~~t----g~~~---------~w-~~~~~~~~EPvFVPrp~~--~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~- 419 (447)
|+|++| |+.+ .| .++++|+|||+||||+++ .+|||||||++|+|..+ .+|+|+||||++|+.
T Consensus 436 K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~-~~S~l~VlDAk~~~~~ 514 (545)
T PLN02491 436 KFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENT-GKSSVNVIDAKTMSAD 514 (545)
T ss_pred EEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCC-CcceEEEEeCCCCCCC
Confidence 999996 4432 45 589999999999999753 58999999999999864 469999999999995
Q ss_pred -eEEEEEeCCCCCCCCCceeeccCCC
Q psy14636 420 -LGRVNFTTPTPVPKCLHGWYFPHER 444 (447)
Q Consensus 420 -var~~l~lP~~vP~gfHG~w~~~~~ 444 (447)
|||++| |+|||+||||+|++.++
T Consensus 515 pVA~v~L--P~rVP~GfHG~fv~~~~ 538 (545)
T PLN02491 515 PVAVVEL--PHRVPYGFHAFFVTEEQ 538 (545)
T ss_pred eeEEEEC--CCCCCCCccccCcCHHH
Confidence 888888 99999999999998764
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=3.4e-98 Score=798.23 Aligned_cols=424 Identities=21% Similarity=0.301 Sum_probs=335.5
Q ss_pred cccccceee-EEeecCCCCC-ceEEEEeCCCCCccCCcceecccCCCCceEEEEEecC--cEEEEEEEecchHHHHHHhc
Q psy14636 4 SEVDQPVQG-TVEGVIPSWI-DGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSG--LVTYQCKFIKSESYIKNHAA 79 (447)
Q Consensus 4 ~e~~~~~~~-~v~G~iP~~L-~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G--~v~y~~R~v~T~~~~~e~~~ 79 (447)
+|..+++++ .|+|+||+|| +|||||||||+++.++.+++||||||||||+|+|++| +|+|+||||||++|++|+++
T Consensus 69 ~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT~~~~~E~~a 148 (610)
T PLN02969 69 SETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKTEAKKEEHDP 148 (610)
T ss_pred hhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeeccHHHHHHHHh
Confidence 344367777 5999999999 9999999999998876678999999999999999998 59999999999999999999
Q ss_pred CCceee----e-ccCCCCCCCcchHHHHHHhhcCCCCCCceeeeeecCCEEEEEecCCceEEeCCCCCceeeeeec----
Q psy14636 80 RRIVVT----G-FGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDL---- 150 (447)
Q Consensus 80 g~~~~~----~-fg~~~~~~p~~~~~~~~~~~~~~~~~~aNt~v~~~gg~llAl~E~~~p~~lDp~TLeT~g~~d~---- 150 (447)
|+.++. + |++.. +++. +.+. ...+|+|||||++|||+||||||+|.||+|||+||||+|++||
T Consensus 149 g~~~~~~~~~~pfs~~~-~~~~------~~~~-~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP~TLeT~G~~d~~~~~ 220 (610)
T PLN02969 149 ETRTWRFTYRGPFSVLK-GGKR------VGNV-KVMKNVANTSVLKWGGRLLCLWEGGEPYEIDSGTLETIGRFDLAPDD 220 (610)
T ss_pred CCcceeeeeccchhccc-CCCC------cccc-cccccCCCcceeeeCCEEEEecCCCCCeEcCcCccceeecccccccc
Confidence 987653 2 22211 1111 0010 1157999999999999999999999999999999999999998
Q ss_pred -------------------------CCCCC--CCCcCccceecC-CCCEEEEecccC---CCCCcEEEEEe---------
Q psy14636 151 -------------------------AGDVT--ILHQTSHPLTTS-DGETFNLGVTLR---PTGPRYCILQL--------- 190 (447)
Q Consensus 151 -------------------------~~~l~--~~~~tAHpk~Dp-tge~~~~~~~~~---~~~~~~~~~~~--------- 190 (447)
.|.+. ...||||||+|| ||++++|+++.. ...+.+.+|++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~~~~~ 300 (610)
T PLN02969 221 DSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQR 300 (610)
T ss_pred cccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEECCCCCEecc
Confidence 33333 457999999999 999999998763 13366777765
Q ss_pred -----cC--CcCCCCcCCCC-----CCCCeecccc----------------CCCCCce-EEEEEECCCC---CeEEE---
Q psy14636 191 -----ND--AFSYPDLSHPP-----PPPPSLRFRD----------------DIDMTST-IFHVLDKTNG---SVVHR--- 235 (447)
Q Consensus 191 -----p~--~~hd~~~~~~~-----~~p~~~~~~~----------------~~~~~~t-~~~vipR~~~---~~v~~--- 235 (447)
|. |+|||+ +|++ ++|+++++.+ +.|++++ +|+||||+++ +.++|
T Consensus 301 ~~~~~p~~~~iHDfa-iTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~W~v~ 379 (610)
T PLN02969 301 KEFKLDDHLMIHDWA-FTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEKEAGGRDWRVP 379 (610)
T ss_pred eeecCCCcceeeeee-ccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEEEECcCCCcccceeeeeE
Confidence 22 899999 9998 8899888541 1288995 8999999976 46799
Q ss_pred EEcC-ceeEEEeeeeeecC--CC--cEEEEEee--ecCCchhhhhhH--HHh--hccCCCCcccccCCCceEEEEEeCC-
Q psy14636 236 FQAD-SFFYLHIINAYEDT--ND--GIVVDICC--YRNPAMLDCMYR--EAL--KNIHSTPRYAQMFRARPLRFRLDLA- 303 (447)
Q Consensus 236 ~~~~-~~~~~H~~NAyE~~--~g--~Iv~D~~~--~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~l~R~~idl~- 303 (447)
|++| +||+||++||||++ +| +||+|+|. |++..+...+.. ... ..............++|+||+||+.
T Consensus 380 ~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~idl~~ 459 (610)
T PLN02969 380 VEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKELLPHLVQVSIDLDR 459 (610)
T ss_pred EeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcccCcccccceEEEEEEeCCc
Confidence 9998 59999999999974 23 49999974 666554432221 110 0000000001123578999999997
Q ss_pred CCCCCCCCcccceeec---CCCcCCCccCCCCCCCccceEEEEecCCC-----CCCCCcEEEEEeeCCceeEEc-CCCCC
Q psy14636 304 SPRTAPTGKVRPSVIC---DVGCETPRMNGQHQGRSYTYFYAISADID-----RDNPGTLIKVNVQNNTCKSWS-QKDVY 374 (447)
Q Consensus 304 ~g~~~~~~~~~~~~l~---~~~~EfP~in~~~~gr~yry~Y~~~~~~~-----~~~~~~i~k~D~~tg~~~~w~-~~~~~ 374 (447)
++++. .++.+.|+ +.++|||+||++|.||+|||+|+++.... ...+++|+|+|++||+.+.|+ ++++|
T Consensus 460 ~g~~~---~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~~~~w~~g~~~~ 536 (610)
T PLN02969 460 TGDCR---SCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDVPDGSARSWSTGARRF 536 (610)
T ss_pred CCccc---cccceeeccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEECCCCCEEEEEeCCCCc
Confidence 56432 24567775 78999999999999999999999876432 235799999999999999998 79999
Q ss_pred CCccEEeeC---CCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCc----eEEEEEeCCCCC--CCCCceeeccC
Q psy14636 375 PSEPVFVAT---PNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE----LGRVNFTTPTPV--PKCLHGWYFPH 442 (447)
Q Consensus 375 ~~EPvFVPr---p~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~----var~~l~lP~~v--P~gfHG~w~~~ 442 (447)
+|||||||| |++.+|||||||++|+|..+ ++|+|+||||++|++ |||++| |++| |+||||+|++.
T Consensus 537 ~~EPvFVPr~~~p~~~~EDDG~Ll~~v~d~~~-~~S~LvILDAk~~~eg~~PVAri~L--P~~v~~P~GfHG~w~~~ 610 (610)
T PLN02969 537 VGEPVFVPRKSSQGGGEEDDGYVLVVEYAVSD-ERCYLVILDAKRIGERDAVVAKLEV--PKHLTFPMGFHGFWADE 610 (610)
T ss_pred ccCCEEecCCCCCCCCccCCcEEEEEEEECCC-CceEEEEEeCCCCcccCceeEEEEC--CcccCCCccccccccCC
Confidence 999999999 46889999999999999864 569999999999998 888888 9998 99999999863
No 6
>KOG1285|consensus
Probab=100.00 E-value=9.4e-66 Score=535.11 Aligned_cols=428 Identities=28% Similarity=0.454 Sum_probs=341.6
Q ss_pred ccccce-eeEEeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecCcEEEEEEEecchHHHHHHhcCCce
Q psy14636 5 EVDQPV-QGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIV 83 (447)
Q Consensus 5 e~~~~~-~~~v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G~v~y~~R~v~T~~~~~e~~~g~~~ 83 (447)
+..++. ++.+.|.||+||+|+++|||||.+..|...++|||||.+++|+++|.||+++|++||++|+.|.+.....+.+
T Consensus 29 ~~~~~~~~~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v 108 (582)
T KOG1285|consen 29 NVSIPRRECTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIV 108 (582)
T ss_pred hccCCccccccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceee
Confidence 344444 4889999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred eeeccCCC-CCCCcchHHHHHHhhcCC---CCCCceeeeeec-CCEEEEEecCCceEEeCCCCCceeeeeecCC-CCCCC
Q psy14636 84 VTGFGTRF-VPDPCASIFQRIATLFKP---GSDNTLVSVYPI-QDQVYALGDSNYMHRIDPATLDTLGKIDLAG-DVTIL 157 (447)
Q Consensus 84 ~~~fg~~~-~~~p~~~~~~~~~~~~~~---~~~~aNt~v~~~-gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~-~l~~~ 157 (447)
.++|++.+ .++||.++|+++.+.+.. .++|||+++++. |++|+|.+|....++||++||+|+..++|.+ .+...
T Consensus 109 ~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~~v~~~ 188 (582)
T KOG1285|consen 109 SGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTETPHAVKIDPGTLETTYKVRFTKTLVQEH 188 (582)
T ss_pred eccccccCCCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCCceeEEecCcccceeEeeccccceeeee
Confidence 99999988 789999999987766543 789999999999 8999999999999999999999999999998 66667
Q ss_pred CcCccceecCCCCEEE-Eecc-cCCC-CCcEEEEEecC-----------------------------CcCCCCcCCCC--
Q psy14636 158 HQTSHPLTTSDGETFN-LGVT-LRPT-GPRYCILQLND-----------------------------AFSYPDLSHPP-- 203 (447)
Q Consensus 158 ~~tAHpk~Dptge~~~-~~~~-~~~~-~~~~~~~~~p~-----------------------------~~hd~~~~~~~-- 203 (447)
.++|||+.|+.|++++ +|.. ++.. ...+.+.+.|. .+|.+. .+++
T Consensus 189 ~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G-~tenyi 267 (582)
T KOG1285|consen 189 TAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFG-DTENYI 267 (582)
T ss_pred ecccCCcccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecC-CccceE
Confidence 8999999999999999 6654 3322 22333333221 566666 5555
Q ss_pred ---CCCCeeccccCC-------------------CCCceEEEEEECCCCCeEEEEEcCceeEEEeeeeeecCCCcEEEEE
Q psy14636 204 ---PPPPSLRFRDDI-------------------DMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDI 261 (447)
Q Consensus 204 ---~~p~~~~~~~~~-------------------~~~~t~~~vipR~~~~~v~~~~~~~~~~~H~~NAyE~~~g~Iv~D~ 261 (447)
+.|+.+++.+++ ++...+++++.+++++.+-.-..+++++||++||||+++ .||.|+
T Consensus 268 ~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg-~vi~D~ 346 (582)
T KOG1285|consen 268 GRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDG-CVVPDL 346 (582)
T ss_pred eEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcceeccCcceEEEeeeecccC-ceEEEE
Confidence 777777665433 667899999999887544223334589999999999997 999999
Q ss_pred eeecCCchhhhh----hHH-----------------------------------HhhccCCC-----------------C
Q psy14636 262 CCYRNPAMLDCM----YRE-----------------------------------ALKNIHST-----------------P 285 (447)
Q Consensus 262 ~~~~~~~~~~~~----~~~-----------------------------------~~~~~~~~-----------------~ 285 (447)
|+|.+....... ..+ +++..... .
T Consensus 347 ~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~ 426 (582)
T KOG1285|consen 347 CVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFR 426 (582)
T ss_pred EEEechhhhhcccceeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccchhhc
Confidence 999886521100 001 11100000 0
Q ss_pred cccccCCCceEEEEEeCCCCCCCCCCcccceeecC-CCcCCCccCCCCCCCccceEEEEecCCCCCCCCcEEEEEeeCCc
Q psy14636 286 RYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICD-VGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNT 364 (447)
Q Consensus 286 ~~~~~~~~~l~R~~idl~~g~~~~~~~~~~~~l~~-~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~~i~k~D~~tg~ 364 (447)
........+|...++++.++. ..+..+.. .++|+++||..|.||+|||+|++..+. ...+++|+|+|+.+|+
T Consensus 427 ~~de~~~~~l~e~r~~~~tg~------~~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~-~p~~~g~vKvDl~~g~ 499 (582)
T KOG1285|consen 427 ESDELLGNRLEEIRLNLKTGL------EFPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDP-WPKVSGIVKVDLVTGE 499 (582)
T ss_pred ccccchhceeeeeeecccccc------cccceeecccccccccccceeecccceEEEEEecCC-ccCCCeEEEEEecCCc
Confidence 001122345566666666653 22333333 589999999999999999999988765 4567999999999999
Q ss_pred eeEEc-CCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCceEEEEEeCCCCCCCCCceeeccCC
Q psy14636 365 CKSWS-QKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHE 443 (447)
Q Consensus 365 ~~~w~-~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~var~~l~lP~~vP~gfHG~w~~~~ 443 (447)
.+.|. +.+++.|||+|||+|++.+|||||+|++|++... ..|+|+||||++|+++||+++ |.+||+||||.|++.+
T Consensus 500 ~~~w~~~~~~~~GEP~FVP~p~~~eEDdG~Iv~~v~~~~~-~~s~l~ildAK~l~~~ar~~v--p~rvP~gfHG~f~~~~ 576 (582)
T KOG1285|consen 500 VKKWREGGGRPGGEPIFVPRPGTLEEDDGYIVSVVHDESK-EKSFLLILDAKTLEEVARVEV--PTRVPYGFHGTFVSTT 576 (582)
T ss_pred eeeEecCCCccCCCceEecCCCCcccCCcEEEEEEEcCCC-CcccEEEEeccccceeeEEec--CCCCCCccceeEeccc
Confidence 99997 5667777999999999999999999999999876 469999999999999999999 9999999999999876
Q ss_pred C
Q psy14636 444 R 444 (447)
Q Consensus 444 ~ 444 (447)
+
T Consensus 577 ~ 577 (582)
T KOG1285|consen 577 D 577 (582)
T ss_pred c
Confidence 5
No 7
>KOG1285|consensus
Probab=99.71 E-value=3.6e-18 Score=179.08 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=172.0
Q ss_pred cccceeeEEeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecC--cEEEEEEEecchHHHHHHhcCC-c
Q psy14636 6 VDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSG--LVTYQCKFIKSESYIKNHAARR-I 82 (447)
Q Consensus 6 ~~~~~~~~v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G--~v~y~~R~v~T~~~~~e~~~g~-~ 82 (447)
.+-+-...++|.+|..++|.+.|||+|+.+.. ...+|+|||+||+|+++|+.+ +++|+.||.+| |..|...|+ .
T Consensus 118 ~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~p-v~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~--~v~~~~~gah~ 194 (582)
T KOG1285|consen 118 FPDPCKNIFSGFFPEFRNGESIRDNANPNFTP-VGGHHLYAGTETPHAVKIDPGTLETTYKVRFTKT--LVQEHTAGAHP 194 (582)
T ss_pred CCCccCcceeeeeeecccccccccCCCcceee-cCCCeeEecCCCceeEEecCcccceeEeeccccc--eeeeeecccCC
Confidence 33444456899999999999999999997532 224599999999999999999 88999999999 999998885 3
Q ss_pred eeeeccCCCC--C-CCcchHHHHHHhhcC-C--CCCCceeeeeecCCEEEEEecCCce--EEeCC-CCCce-eeeeecCC
Q psy14636 83 VVTGFGTRFV--P-DPCASIFQRIATLFK-P--GSDNTLVSVYPIQDQVYALGDSNYM--HRIDP-ATLDT-LGKIDLAG 152 (447)
Q Consensus 83 ~~~~fg~~~~--~-~p~~~~~~~~~~~~~-~--~~~~aNt~v~~~gg~llAl~E~~~p--~~lDp-~TLeT-~g~~d~~~ 152 (447)
.+...|+..- + ..+.-.+++....+. + ..+.+|+..++..++++|+.|...| ..+.. ..+|| |+.++|.+
T Consensus 195 ~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~ 274 (582)
T KOG1285|consen 195 HPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPL 274 (582)
T ss_pred cccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCc
Confidence 4444444321 0 001000122221111 1 3334777778888999998777654 44433 46899 99999999
Q ss_pred CCCCCCcCccceecC-CCCEEEEecccCCCCCcEEEEEe-------------c---CCcCCCCcCCCC-----CCCCeec
Q psy14636 153 DVTILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCILQL-------------N---DAFSYPDLSHPP-----PPPPSLR 210 (447)
Q Consensus 153 ~l~~~~~tAHpk~Dp-tge~~~~~~~~~~~~~~~~~~~~-------------p---~~~hd~~~~~~~-----~~p~~~~ 210 (447)
++. ....||||+|| +|+++...|+..+. +.+.++++ + -|.|+++ .+++ +.++..+
T Consensus 275 ~l~-~~~~a~pk~~~~~g~~~~~~yd~~~~-~~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na-~eedg~vi~D~~~~~~ 351 (582)
T KOG1285|consen 275 RLN-LSKFAHPKLDPVTGEWFADFYDWVPK-PYLIYHKFSKEGGKSVPVEIFPSFPTFHHDNA-FEEDGCVVPDLCVYFD 351 (582)
T ss_pred ccc-hhhhccCcccccccchhhhhhcccCC-CcEEEEEeccccCccCcceeccCcceEEEeee-ecccCceEEEEEEEec
Confidence 986 56899999999 99999998887653 44444443 1 1677877 6665 3444444
Q ss_pred cccCC---------CCCceEEEEEECCCC--CeEEEEEcCceeEEEeeeeeecC
Q psy14636 211 FRDDI---------DMTSTIFHVLDKTNG--SVVHRFQADSFFYLHIINAYEDT 253 (447)
Q Consensus 211 ~~~~~---------~~~~t~~~vipR~~~--~~v~~~~~~~~~~~H~~NAyE~~ 253 (447)
+..|. ..+..|+++.++.-. ..++|...+.++++|..|+||+.
T Consensus 352 ~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~ 405 (582)
T KOG1285|consen 352 LSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKK 405 (582)
T ss_pred hhhhhcccceeecccccccccccccccCCcccceEEEeccccccccchhhhccc
Confidence 44322 567889999988754 46899999999999999999963
No 8
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.41 Score=44.61 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=87.5
Q ss_pred ecccCCCCceEEEEEecCcEE-EEEEEecchHHHHHHhcCCceeeeccCCCCCCCcchHHHHHHhhcCCCCCCceeeeee
Q psy14636 42 DHLFDCSGLLHRFKISSGLVT-YQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYP 120 (447)
Q Consensus 42 ~H~FDGdGmv~~~~~~~G~v~-y~~R~v~T~~~~~e~~~g~~~~~~fg~~~~~~p~~~~~~~~~~~~~~~~~~aNt~v~~ 120 (447)
.|++|--..-+++...||+.. =..+|=++.-++-+-..|+.++. +...++ ++|+ -.+..
T Consensus 39 ~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s---~~l~~~---~~Fg--------------EGit~ 98 (262)
T COG3823 39 TYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFS---EKLAPD---TVFG--------------EGITK 98 (262)
T ss_pred eccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEE---eecCCc---cccc--------------cceee
Confidence 478888888888888887542 11222222222222233444432 111110 1111 14678
Q ss_pred cCCEEEEE-ecCCceEEeCCCCCceeeeeecCCCCCCCCcCccceecCCCCEEEEecccCCCCCcEEEEEecC---CcCC
Q psy14636 121 IQDQVYAL-GDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLND---AFSY 196 (447)
Q Consensus 121 ~gg~llAl-~E~~~p~~lDp~TLeT~g~~d~~~~l~~~~~tAHpk~Dptge~~~~~~~~~~~~~~~~~~~~p~---~~hd 196 (447)
+|+.+|+| |-.|..+..|++||+++|++.|.|.=-+. | .+++-.-++ .+...-.|+=|. .+..
T Consensus 99 ~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgL--t------~d~~~Lims-----dGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 99 LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGL--T------SDDKNLIMS-----DGSATLQFRDPKTFAELDT 165 (262)
T ss_pred ccceEEEEEeccceeEEEChHHhhhhcccccCCcceee--e------cCCcceEee-----CCceEEEecCHHHhhhcce
Confidence 99999998 56679999999999999999998762221 1 122211221 122223333332 1111
Q ss_pred CCcCCCCCCCCe-eccccCC-------CCCceEEEEEECCCCCeEEEEEcCce
Q psy14636 197 PDLSHPPPPPPS-LRFRDDI-------DMTSTIFHVLDKTNGSVVHRFQADSF 241 (447)
Q Consensus 197 ~~~~~~~~~p~~-~~~~~~~-------~~~~t~~~vipR~~~~~v~~~~~~~~ 241 (447)
+. ++.+-.|+. ++-.++. -=+.++|..|+-.+|+.+.|+++.+.
T Consensus 166 v~-VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L 217 (262)
T COG3823 166 VQ-VTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGL 217 (262)
T ss_pred EE-EEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCC
Confidence 11 222112221 1101111 12578999999999998899998753
No 9
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=60.38 E-value=10 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=19.3
Q ss_pred eeeecCCEEEEEecCCceEEeCCCC
Q psy14636 117 SVYPIQDQVYALGDSNYMHRIDPAT 141 (447)
Q Consensus 117 ~v~~~gg~llAl~E~~~p~~lDp~T 141 (447)
++...+|+||+.++.|.-+.||++|
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT-
T ss_pred CCEEECCEEEEEcCCCEEEEEeCCC
Confidence 4566799999999999999999976
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=45.72 E-value=81 Score=32.25 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=42.6
Q ss_pred CCccceEEEEecCCCCCCCCcEEEEEeeCCceeEEcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEe
Q psy14636 334 GRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLN 413 (447)
Q Consensus 334 gr~yry~Y~~~~~~~~~~~~~i~k~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlD 413 (447)
...-||+|.+..+ ..|.++|+.+++...-..- +.+|.=|. -+.|.-||++.-+. ...+.|||
T Consensus 45 s~Dgr~~yv~~rd------g~vsviD~~~~~~v~~i~~---G~~~~~i~----~s~DG~~~~v~n~~-----~~~v~v~D 106 (369)
T PF02239_consen 45 SPDGRYLYVANRD------GTVSVIDLATGKVVATIKV---GGNPRGIA----VSPDGKYVYVANYE-----PGTVSVID 106 (369)
T ss_dssp TT-SSEEEEEETT------SEEEEEETTSSSEEEEEE----SSEEEEEE----E--TTTEEEEEEEE-----TTEEEEEE
T ss_pred cCCCCEEEEEcCC------CeEEEEECCcccEEEEEec---CCCcceEE----EcCCCCEEEEEecC-----CCceeEec
Confidence 3446889986522 4799999999986332221 23444333 12355577764332 25899999
Q ss_pred cCCcCceEEEEE
Q psy14636 414 ARTMQELGRVNF 425 (447)
Q Consensus 414 A~~l~~var~~l 425 (447)
+++|+.+.++..
T Consensus 107 ~~tle~v~~I~~ 118 (369)
T PF02239_consen 107 AETLEPVKTIPT 118 (369)
T ss_dssp TTT--EEEEEE-
T ss_pred cccccceeeccc
Confidence 999998666654
No 11
>PRK13680 hypothetical protein; Provisional
Probab=44.97 E-value=21 Score=30.06 Aligned_cols=61 Identities=13% Similarity=0.283 Sum_probs=40.4
Q ss_pred EEEEeeCCceeEEcCCCCCCC--ccE-EeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCC
Q psy14636 356 IKVNVQNNTCKSWSQKDVYPS--EPV-FVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNART 416 (447)
Q Consensus 356 ~k~D~~tg~~~~w~~~~~~~~--EPv-FVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~ 416 (447)
+|=|..-.+...|..+....| -|| .|-...-..+||+|++-+...+.+....+.+++|.++
T Consensus 46 VK~DflqNRI~RW~~Dkk~LGt~~PVaWin~~~itg~~~~~~VPltVRG~k~d~~Y~V~vdC~~ 109 (117)
T PRK13680 46 VKRDYLQNRIARWADDQKQLGQADPVAWVNVQDITGKDDKWQVPLTVRGKSADIHYQVVVDCKA 109 (117)
T ss_pred HHHHHhhccccchhhhHhhcCCCCCeEEEcccccccccceEEEEEEEecccCceEEEEEEEccC
Confidence 455555556666754333333 454 3333344568999999998887777778999999874
No 12
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=39.04 E-value=65 Score=25.98 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=30.5
Q ss_pred cCCEEEEEecCCceEEeCCCCCceeeeeecCC-CCC
Q psy14636 121 IQDQVYALGDSNYMHRIDPATLDTLGKIDLAG-DVT 155 (447)
Q Consensus 121 ~gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~-~l~ 155 (447)
...|.|-|||++.-+-+||++..-.|+..+.. .|.
T Consensus 15 ~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~~~l~ 50 (89)
T cd01262 15 AKKRQLILTNGPRLIYVDPVKKVVKGEIPWSDVELR 50 (89)
T ss_pred cceeeEEEecCceEEEEcCCcCeEEeEecccccceE
Confidence 46889999999999999999999999998887 543
No 13
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=34.67 E-value=3e+02 Score=27.28 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=62.6
Q ss_pred CcCCCccCCCCCCCccceEEEEecCCCCCCCCcEEEEEeeCCceeEEc-CC-----------CCCCCccEEeeCCCCCCC
Q psy14636 322 GCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWS-QK-----------DVYPSEPVFVATPNARKE 389 (447)
Q Consensus 322 ~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~~i~k~D~~tg~~~~w~-~~-----------~~~~~EPvFVPrp~~~~E 389 (447)
+-++..||.--.-.+-. |.++.+ ..+.|+++|-.||+..-+- ++ =++..-|-|++.. +
T Consensus 140 ~~D~~HiNsV~~~~~G~--yLiS~R----~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~----~ 209 (299)
T PF14269_consen 140 PWDYFHINSVDKDDDGD--YLISSR----NTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNES----N 209 (299)
T ss_pred CCCccEeeeeeecCCcc--EEEEec----ccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccC----C
Confidence 45666666321112223 455443 3589999999999874443 44 1334556666643 5
Q ss_pred CCeEEEEEEEeCC-------CCCceEEEEEecCCcCceEEEEEeCCCCCCCCCceeeccCCCC
Q psy14636 390 DEGVLLSVLLWSH-------HPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHERK 445 (447)
Q Consensus 390 dDG~Ll~~v~d~~-------~~~~s~l~IlDA~~l~~var~~l~lP~~vP~gfHG~w~~~~~~ 445 (447)
++|.|+. +|.. ...++.++-||..+++....-.. . .-|.+|+..+....|+
T Consensus 210 ~~~~Isl--FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~--~-~~~~~~~s~~~G~~Q~ 267 (299)
T PF14269_consen 210 DDGTISL--FDNANSDFNGTEPSRGLVLELDPETMTVTLVREY--S-DHPDGFYSPSQGSAQR 267 (299)
T ss_pred CCCEEEE--EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEe--e-cCCCcccccCCCcceE
Confidence 7887775 3542 12458999999996665322222 1 1466676666555543
No 14
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=32.57 E-value=76 Score=30.96 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=30.8
Q ss_pred eeeecCCEEEEE-ecCCceEEeCCCCCceeeeeecCCC
Q psy14636 117 SVYPIQDQVYAL-GDSNYMHRIDPATLDTLGKIDLAGD 153 (447)
Q Consensus 117 ~v~~~gg~llAl-~E~~~p~~lDp~TLeT~g~~d~~~~ 153 (447)
.+..++++|+-| |-.+.-+..|+.||+.++.+.|.+.
T Consensus 94 Git~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E 131 (264)
T PF05096_consen 94 GITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE 131 (264)
T ss_dssp EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS
T ss_pred eEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCc
Confidence 366789999988 6788999999999999999988753
No 15
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=30.90 E-value=79 Score=32.32 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCCccCCCCCCCccceEEEEecCCCCCCCCcEEEEEeeCCceeE-Ec-CCCCCCCccEEeeCCCCCCCCCeEEEEEEEeC
Q psy14636 324 ETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKS-WS-QKDVYPSEPVFVATPNARKEDEGVLLSVLLWS 401 (447)
Q Consensus 324 EfP~in~~~~gr~yry~Y~~~~~~~~~~~~~i~k~D~~tg~~~~-w~-~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~ 401 (447)
-|-+.+|+ -+|+|...... .-.+.|.-+|.+|-+... .. .++.-+-.+-|= .+++=..+| +.+.
T Consensus 272 lFi~thP~-----s~~vwvd~~~~--~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~------~dG~~v~vS-~~~~ 337 (369)
T PF02239_consen 272 LFIKTHPD-----SRYVWVDTFLN--PDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN------PDGKEVWVS-VWDG 337 (369)
T ss_dssp --EE--TT------SEEEEE-TT---SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-------TTSSEEEEE-EE--
T ss_pred ceeecCCC-----CccEEeeccCC--CCCceEEEEECcCcceeEEEeccCCCcEeccEEC------CCCCEEEEE-EecC
Confidence 66677775 36888752211 115799999999986532 22 223222222232 334555566 4453
Q ss_pred CCCCceEEEEEecCCcCceEEEEEeCC
Q psy14636 402 HHPTRVSLLVLNARTMQELGRVNFTTP 428 (447)
Q Consensus 402 ~~~~~s~l~IlDA~~l~~var~~l~lP 428 (447)
+ ..|+|+|++++++++|+.+..|
T Consensus 338 --~--~~i~v~D~~Tl~~~~~i~~~tP 360 (369)
T PF02239_consen 338 --N--GAIVVYDAKTLKEKKRIPVPTP 360 (369)
T ss_dssp --T--TEEEEEETTTTEEEEEEE--SE
T ss_pred --C--CEEEEEECCCcEEEEEEEeeCC
Confidence 2 2999999999999999998555
No 16
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=26.87 E-value=1.3e+02 Score=19.26 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCEEEEEe-cCCceEEeCCCCCceeeeeec
Q psy14636 122 QDQVYALG-DSNYMHRIDPATLDTLGKIDL 150 (447)
Q Consensus 122 gg~llAl~-E~~~p~~lDp~TLeT~g~~d~ 150 (447)
+++||+.. ..+.-..||+.|++.++....
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56788765 467788899999999988766
No 17
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=25.06 E-value=90 Score=32.15 Aligned_cols=58 Identities=7% Similarity=0.056 Sum_probs=38.4
Q ss_pred CCCcEEEEEeeCCceeEEcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCc-eEEEEEecC
Q psy14636 351 NPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTR-VSLLVLNAR 415 (447)
Q Consensus 351 ~~~~i~k~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~-s~l~IlDA~ 415 (447)
+...|+++|++||+.+.-..+..+.+=++|=| .|..||++.|.+.-+.- +.++++|+.
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP-------~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP-------TDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEET-------TEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCC-------CCCCEEEEeccCCcceeceEEEEEEcC
Confidence 34789999999999987666777788999988 56677777777543332 478888864
No 18
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=23.14 E-value=3.4e+02 Score=27.54 Aligned_cols=115 Identities=10% Similarity=0.143 Sum_probs=62.7
Q ss_pred cCCCCceEEEEEecCcEEEEEEEecchHHHHHHhcCCceeeec--cCCCCCCCc--chHHHHHHhhcCCCCCCceeeeee
Q psy14636 45 FDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGF--GTRFVPDPC--ASIFQRIATLFKPGSDNTLVSVYP 120 (447)
Q Consensus 45 FDGdGmv~~~~~~~G~v~y~~R~v~T~~~~~e~~~g~~~~~~f--g~~~~~~p~--~~~~~~~~~~~~~~~~~aNt~v~~ 120 (447)
.+.+|.++++..++|+..++..+-..... ...+..+|-.- |....-++. ..+|.. .. .......+.+.
T Consensus 262 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~---~~~~~~vy~~~~~g~l~ald~~tG~~~W~~--~~---~~~~~~~sp~v 333 (394)
T PRK11138 262 LAYNGNLVALDLRSGQIVWKREYGSVNDF---AVDGGRIYLVDQNDRVYALDTRGGVELWSQ--SD---LLHRLLTAPVL 333 (394)
T ss_pred EEcCCeEEEEECCCCCEEEeecCCCccCc---EEECCEEEEEcCCCeEEEEECCCCcEEEcc--cc---cCCCcccCCEE
Confidence 36679999999999999888765221110 11233333210 110000100 001100 00 01111223445
Q ss_pred cCCEEEEEecCCceEEeCCCCCceeeeeecCCCCCCCCcCccceecCCCCEE
Q psy14636 121 IQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETF 172 (447)
Q Consensus 121 ~gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~~l~~~~~tAHpk~Dptge~~ 172 (447)
.+|+|+...+.|.-+.||+.|=+.+...+..+ ..+.+.|.+. .|.+|
T Consensus 334 ~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~----~~~~s~P~~~-~~~l~ 380 (394)
T PRK11138 334 YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS----SGFLSEPVVA-DDKLL 380 (394)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC----CcceeCCEEE-CCEEE
Confidence 78999999999999999999988888776642 2356677664 34443
No 19
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=22.81 E-value=2e+02 Score=28.07 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=21.7
Q ss_pred CCCeEEEEEEEeCC----CCCceEEEEEecCCcCceEEEEEe
Q psy14636 389 EDEGVLLSVLLWSH----HPTRVSLLVLNARTMQELGRVNFT 426 (447)
Q Consensus 389 EdDG~Ll~~v~d~~----~~~~s~l~IlDA~~l~~var~~l~ 426 (447)
+.+||=|+ +|.. .+.++.|..+|+++|+.+-++.+.
T Consensus 129 ~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 129 PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 46899888 3432 134589999999999997777763
No 20
>PF14839 DOR: DOR family
Probab=22.28 E-value=48 Score=31.25 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.3
Q ss_pred CCCCCCeEEEEEEEe
Q psy14636 386 ARKEDEGVLLSVLLW 400 (447)
Q Consensus 386 ~~~EdDG~Ll~~v~d 400 (447)
.++|||||||+=+.+
T Consensus 2 ~e~edD~WilVD~~~ 16 (216)
T PF14839_consen 2 SEEEDDEWILVDFID 16 (216)
T ss_pred CccccCCeEEEEecC
Confidence 357899999997776
No 21
>CHL00108 psbJ photosystem II protein J
Probab=22.27 E-value=30 Score=23.27 Aligned_cols=12 Identities=42% Similarity=0.988 Sum_probs=10.1
Q ss_pred eecCCCCCceEE
Q psy14636 15 EGVIPSWIDGVL 26 (447)
Q Consensus 15 ~G~iP~~L~Gt~ 26 (447)
+|+||-||-||.
T Consensus 5 tGRiPLWlVgtv 16 (40)
T CHL00108 5 TGRIPLWLIGTV 16 (40)
T ss_pred cccccEEeeeeh
Confidence 599999998875
No 22
>KOG4105|consensus
Probab=21.75 E-value=36 Score=28.48 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEeCCCCCceeeee-ecCCCCC--CCCcCccceecC-CCCEEEEe
Q psy14636 133 YMHRIDPATLDTLGKI-DLAGDVT--ILHQTSHPLTTS-DGETFNLG 175 (447)
Q Consensus 133 ~p~~lDp~TLeT~g~~-d~~~~l~--~~~~tAHpk~Dp-tge~~~~~ 175 (447)
.+..-|.+.|++.|++ +++|.-. ..-.|-|-.+|| ||-.++..
T Consensus 23 S~~LSDaENle~FGKCNN~nGHGHNY~v~vtvrGeiDp~tGMV~nla 69 (141)
T KOG4105|consen 23 SEKLSDAENLETFGKCNNSNGHGHNYVVKVTVRGEIDPTTGMVYNLA 69 (141)
T ss_pred ccccCchhhhHHhhccCCCCCCCcceEEEEEEecccCCccceeEEHH
Confidence 3455688999999998 5665310 123678888999 88777764
Done!