Query psy14636
Match_columns 447
No_of_seqs 131 out of 1117
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 16:46:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kvc_A Retinoid isomerohydrola 100.0 7E-115 2E-119 918.5 37.7 435 2-442 18-533 (533)
2 2biw_A Apocarotenoid-cleaving 100.0 5E-108 2E-112 858.0 39.6 406 11-442 34-490 (490)
3 3npe_A 9-CIS-epoxycarotenoid d 100.0 1E-105 5E-110 844.2 42.2 410 3-443 55-522 (529)
4 3mbr_X Glutamine cyclotransfer 59.8 24 0.00083 32.5 7.6 36 117-152 69-105 (243)
5 2mad_H Methylamine dehydrogena 34.2 1.7E+02 0.0057 28.1 9.5 79 338-425 33-115 (373)
6 3nol_A Glutamine cyclotransfer 33.8 43 0.0015 31.2 4.8 36 117-152 91-127 (262)
7 3c75_H MADH, methylamine dehyd 31.4 94 0.0032 30.9 7.2 79 338-425 85-167 (426)
8 3nok_A Glutaminyl cyclase; bet 30.9 46 0.0016 31.2 4.5 35 118-152 101-136 (268)
9 1qks_A Cytochrome CD1 nitrite 30.3 2.2E+02 0.0075 29.3 10.1 105 296-425 178-284 (567)
10 3nol_A Glutamine cyclotransfer 24.4 91 0.0031 29.0 5.3 37 118-154 177-214 (262)
11 3mbr_X Glutamine cyclotransfer 21.8 87 0.003 28.7 4.5 36 120-155 157-193 (243)
12 3ici_C Calnexin, PP90; protein 21.4 40 0.0014 21.7 1.4 15 373-387 2-16 (38)
No 1
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=7e-115 Score=918.55 Aligned_cols=435 Identities=31% Similarity=0.618 Sum_probs=365.2
Q ss_pred CCcccccceeeEEeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecCcEEEEEEEecchHHHHHHhcCC
Q psy14636 2 DNSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARR 81 (447)
Q Consensus 2 ~~~e~~~~~~~~v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G~v~y~~R~v~T~~~~~e~~~g~ 81 (447)
.++|+++|++|.|+|+||+||+|||||||||++++++.+++||||||||||+|+|+||+|+|+||||||++|++|+++|+
T Consensus 18 ~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~T~~~~~e~~agr 97 (533)
T 3kvc_A 18 TVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKR 97 (533)
T ss_dssp CCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECCCHHHHHHHHHTS
T ss_pred cccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEecCHHHHHHHHcCC
Confidence 57899999999999999999999999999999998988899999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCCCcchHHHHHHhhcCC--CCCCceeeeeecCCEEEEEecCCceEEeCCCCCceeeeeecCCCCCCCCc
Q psy14636 82 IVVTGFGTRFVPDPCASIFQRIATLFKP--GSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQ 159 (447)
Q Consensus 82 ~~~~~fg~~~~~~p~~~~~~~~~~~~~~--~~~~aNt~v~~~gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~~l~~~~~ 159 (447)
++|++||+...++||+++|+++++.+.. .++||||||++|+|+||||||+++|++|||+||||+|++||+|.|+...|
T Consensus 98 ~~~~~fg~~~~~~p~~~~~~~~~~~~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp~tLeT~G~~d~~g~l~~~~~ 177 (533)
T 3kvc_A 98 IVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVGEDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGA 177 (533)
T ss_dssp CCSCBTTBCC-------------------CCCCCCCSEEEEETTEEEEECSSSEEEEECTTTCCEEEEEEHHHHSSCSCC
T ss_pred cceeccCcccCCcchhhHHHHHHHhhccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeChHHcccccccccCCccCCCcc
Confidence 9999999998899999999998777653 67899999999999999999999999999999999999999999987889
Q ss_pred CccceecCCCCEEEEecccCCC-CCcEEEEEec---------------------------CCcCCCCcCCCC-----CCC
Q psy14636 160 TSHPLTTSDGETFNLGVTLRPT-GPRYCILQLN---------------------------DAFSYPDLSHPP-----PPP 206 (447)
Q Consensus 160 tAHpk~Dptge~~~~~~~~~~~-~~~~~~~~~p---------------------------~~~hd~~~~~~~-----~~p 206 (447)
|||||+|||||+|||++++++. .+.|.+|+++ .|+|||+ +|++ ++|
T Consensus 178 tAHPk~DptGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFa-iTeny~Vf~~~P 256 (533)
T 3kvc_A 178 TAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFG-LTPNYIVFVETP 256 (533)
T ss_dssp CSCCEECTTSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCE-ECSSEEEEEECS
T ss_pred CCCCccCCCCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeee-ecCCEEEEEeCC
Confidence 9999999999999999998764 4678887632 2899999 9998 889
Q ss_pred CeeccccC-----------------CCCCceEEEEEECCCCCe-EEEEEcCceeEEEeeeeeecCCCcEEEEEeeecC-C
Q psy14636 207 PSLRFRDD-----------------IDMTSTIFHVLDKTNGSV-VHRFQADSFFYLHIINAYEDTNDGIVVDICCYRN-P 267 (447)
Q Consensus 207 ~~~~~~~~-----------------~~~~~t~~~vipR~~~~~-v~~~~~~~~~~~H~~NAyE~~~g~Iv~D~~~~~~-~ 267 (447)
+++|+.+| .|++++||+||||++++. ++||++++||+||++||||++| +||+|+|+|++ .
T Consensus 257 ~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~~~~~~~~~~~f~fH~~NA~Ee~~-~Iv~d~~~~~~~~ 335 (533)
T 3kvc_A 257 VKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHE-FLIVDLCCWKGFE 335 (533)
T ss_dssp EEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEEEEEEEEECCEEEEEEEEEEEETT-EEEEEEEEEESSS
T ss_pred eEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCcccEEEEeCCeeEEeeeeeEEeCC-EEEEEEeeeCCch
Confidence 99886543 188999999999999875 4899999999999999999877 99999999999 7
Q ss_pred chhhhhhHHHhhccCC--CCcccccCCCceEEEEEeCCCCCCCC------------------CC--cccceeecC--C-C
Q psy14636 268 AMLDCMYREALKNIHS--TPRYAQMFRARPLRFRLDLASPRTAP------------------TG--KVRPSVICD--V-G 322 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~R~~idl~~g~~~~------------------~~--~~~~~~l~~--~-~ 322 (447)
++++.++++++++... .......+.++|+||+|||++++... .+ +++++.|++ . +
T Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~ 415 (533)
T 3kvc_A 336 FVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQA 415 (533)
T ss_dssp CGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEEECEEEECBTTEE
T ss_pred hhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCceeeeeeeeccCCccc
Confidence 7777777777754210 00112245688999999999851000 00 156788885 6 8
Q ss_pred cCCCccCC-CCCCCccceEEEEecCCCCCCCCcEEEEEeeCCceeEEcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEeC
Q psy14636 323 CETPRMNG-QHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWS 401 (447)
Q Consensus 323 ~EfP~in~-~~~gr~yry~Y~~~~~~~~~~~~~i~k~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~ 401 (447)
+|||+||+ +|.||+|||+|+++.. ...+++|+|+|++||+.+.|+++++|+|||||||||++++|||||||++|+|.
T Consensus 416 ~EfP~In~~~~~Gr~~Ry~Y~~~~~--~~~~~~l~K~D~~tg~~~~w~~~~~~~~EPiFVPrp~~~~EDDG~lLs~V~d~ 493 (533)
T 3kvc_A 416 FEFPQINYQKYGGKPYTYAYGLGLN--HFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSP 493 (533)
T ss_dssp EEEEECCHHHHTTSCCCEEEEEEEE--TTEEEEEEEEETTTCCEEEECCTTCBCCCCEEEECTTCCSTTCEEEEEEEECC
T ss_pred ccCceECHHHhCCCcccEEEEeccC--CCCCceeEEEEcCCCCEEEEeCCCccccCceeecCCCCCCCCCcEEEEEEEeC
Confidence 99999998 7999999999998765 35679999999999999999999999999999999999999999999999998
Q ss_pred CC-CCceEEEEEecCCcCceEEEEEeCCCCCCCCCceeeccC
Q psy14636 402 HH-PTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPH 442 (447)
Q Consensus 402 ~~-~~~s~l~IlDA~~l~~var~~l~lP~~vP~gfHG~w~~~ 442 (447)
.+ +++|+|+||||++|++||||+| |++||+||||+|++.
T Consensus 494 ~~~~~~s~LlILDA~~l~~vArv~l--P~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 494 GAGQKPAYLLILNAKDLSEVARAEV--EINIPVTFHGLFKKS 533 (533)
T ss_dssp STTSCSEEEEEEETTTCCEEEEEEE--SSCCCCCCEEEEEEC
T ss_pred CcCCCccEEEEEeCCCChhhEEEEe--CCCCCCCccccccCC
Confidence 75 5668999999999999999999 999999999999863
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=5.3e-108 Score=857.96 Aligned_cols=406 Identities=24% Similarity=0.417 Sum_probs=353.6
Q ss_pred eeE-EeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEE-ecCcEEEEEEEecchHHHHHHhcCCceeee-c
Q psy14636 11 QGT-VEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKI-SSGLVTYQCKFIKSESYIKNHAARRIVVTG-F 87 (447)
Q Consensus 11 ~~~-v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~-~~G~v~y~~R~v~T~~~~~e~~~g~~~~~~-f 87 (447)
.+. |+|+||+||+|||||||||++++++.+++||||||||||+|+| +||+|+|+||||||++|++|+++|+++|++ |
T Consensus 34 ~l~~V~G~IP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~G~v~y~~R~v~T~~~~~e~~ag~~~~~~~f 113 (490)
T 2biw_A 34 WVEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRTQGYVEEQKAGKMIYRGVF 113 (490)
T ss_dssp ECCCEEECCCTTCCEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSSSCCEEEEEECCCHHHHHHHHHTSCCSBCTT
T ss_pred ccceEEeCCCCCCCeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCCCEEEEEcceEeCHHHHHHHHhCCccccccc
Confidence 476 9999999999999999999999988889999999999999999 999999999999999999999999999999 9
Q ss_pred cCCCCCCCcchHHHHHHhhcCC-CCCCceeeeeecCCEEEEEecCCceEEeCCCCCceeeeeecCCCC-CCCCcCcccee
Q psy14636 88 GTRFVPDPCASIFQRIATLFKP-GSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDV-TILHQTSHPLT 165 (447)
Q Consensus 88 g~~~~~~p~~~~~~~~~~~~~~-~~~~aNt~v~~~gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~~l-~~~~~tAHpk~ 165 (447)
|+...+++|.++ +.. .+++|||||++|+||||||||++.||+|||+||||+|+++|+|.| ++..||||||+
T Consensus 114 g~~~~~~~~~~~-------~~~~~~~~aNT~v~~~~g~llAl~E~~~p~~ldp~tLeT~G~~d~~g~l~~~~~~tAHPk~ 186 (490)
T 2biw_A 114 GSQPAGGWLKTI-------FDLRLKNIANTNITYWGDRLLALWEGGQPHRLEPSNLATIGLDDLGGILAEGQPLSAHPRI 186 (490)
T ss_dssp SCCCSSTHHHHT-------TCCCBCCCCCSEEEEETTEEEEECTTSCCEEECTTTCCEEEECCTTTTSCTTCCCCSCCEE
T ss_pred ccCCCCchhhhh-------cccccCCCCEEEEEEECCEEEEEEcCCCCEecccccccEeeeeccCCcccCCcccccCceE
Confidence 987666655432 222 589999999999999999999999999999999999999999999 66789999999
Q ss_pred cCC-------CCEEEEecccCCCCCcEEEEEe--------------cC--CcCCCCcCCCC-----CCCCeeccccC---
Q psy14636 166 TSD-------GETFNLGVTLRPTGPRYCILQL--------------ND--AFSYPDLSHPP-----PPPPSLRFRDD--- 214 (447)
Q Consensus 166 Dpt-------ge~~~~~~~~~~~~~~~~~~~~--------------p~--~~hd~~~~~~~-----~~p~~~~~~~~--- 214 (447)
||. ||+++|+++.++ ...++++++ |. |+|||+ +|++ +.|+.+++.++
T Consensus 187 Dp~~~~~~gtgel~~fg~~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfa-iTeny~V~~~~P~~~~~~~~~~g 264 (490)
T 2biw_A 187 DPASTFDGGQPCYVTFSIKSSL-SSTLTLLELDPQGKLLRQKTETFPGFAFIHDFA-ITPHYAIFLQNNVTLNGLPYLFG 264 (490)
T ss_dssp ESSCTTTTTCCEEEEEEEEESS-EEEEEEEEECTTSCEEEEEEEEEESCCCCCCCE-ECSSEEEEEECCEEECCHHHHTT
T ss_pred CccccccCCCCeEEEEEecCCC-CcEEEEEEECCCCCEEeeEEEeCCCCceEeeee-ccCCEEEEEeCCeEEcHHHHhhc
Confidence 994 599999998753 234666654 22 999999 9998 89999987542
Q ss_pred ----------CCCCceEEEEEECCCCCeEEEEEcCceeEEEeeeeeecCCCcEEEEEeeecCCchhhhhhHHHhhccCCC
Q psy14636 215 ----------IDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHST 284 (447)
Q Consensus 215 ----------~~~~~t~~~vipR~~~~~v~~~~~~~~~~~H~~NAyE~~~g~Iv~D~~~~~~~~~~~~~~~~~~~~~~~~ 284 (447)
.+++++||+||||+ ++.|+||++++||+||++||||++| +||+|+|+|++..++... .++..
T Consensus 265 ~~~~~~~~~~~p~~~tr~~VipR~-~~~v~~f~~~~~f~fH~~NA~Ee~~-~Iv~d~~~~~~~~~~~~~--~~~~~---- 336 (490)
T 2biw_A 265 LRGAGECVQFHPDKPAQIILVPRD-GGEIKRIPVQAGFVFHHANAFEENG-KIILDSICYNSLPQVDTD--GDFRS---- 336 (490)
T ss_dssp SSCGGGGEEECTTSCEEEEEEETT-SCCCEEEEECCCEEEEEEEEEEETT-EEEEEEEEESCCCCCCTT--CCGGG----
T ss_pred cCCccceeEeCCCCCcEEEEEECC-CCccEEEecCCCeEEecccceecCC-eEEEEEeccCCccccccc--ccccc----
Confidence 28999999999999 7779999999999999999999977 999999999987643210 01111
Q ss_pred CcccccCCCceEEEEEeCCCCCCCCCCcccceeecCCCcCCCccCCCCCCCccceEEEEecCC--CCCCCCcEEEEEeeC
Q psy14636 285 PRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADI--DRDNPGTLIKVNVQN 362 (447)
Q Consensus 285 ~~~~~~~~~~l~R~~idl~~g~~~~~~~~~~~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~~--~~~~~~~i~k~D~~t 362 (447)
......+.++|+||+|||++++ ++++.|++.++|||+||++|.||+|||+|++..+. ....+++|+|+|++|
T Consensus 337 ~~~~~~~~~~l~R~~i~l~~g~------v~~~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l~K~D~~t 410 (490)
T 2biw_A 337 TNFDNLDPGQLWRFTIDPAAAT------VEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLES 410 (490)
T ss_dssp CCGGGSCCCEEEEEEEETTTTE------EEEEEEECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCCCCCEEEEEETTT
T ss_pred cccccCCCceEEEEEEECCCCc------eEEEeccCCcccccccChhhCCceeeeEEEEeecCCCCCCCCCeEEEEECCC
Confidence 0122345689999999999985 67888999999999999999999999999987652 345679999999999
Q ss_pred CceeEEc-CCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCc--eEEEEEeCCCCCCCCCceee
Q psy14636 363 NTCKSWS-QKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE--LGRVNFTTPTPVPKCLHGWY 439 (447)
Q Consensus 363 g~~~~w~-~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~--var~~l~lP~~vP~gfHG~w 439 (447)
|+.+.|. ++++|+|||+|||||++.+|||||||++|+|..+ ++|+|+||||++|++ |||++| |++||+||||+|
T Consensus 411 g~~~~~~~g~g~~~~EPvFVPrp~~~~EDDG~ll~~V~d~~~-~~S~l~IlDA~~~~~~pvArv~l--P~rvP~GfHG~w 487 (490)
T 2biw_A 411 GTETLRSFAPHGFAGEPIFVPRPGGVAEDDGWLLCLIYKADL-HRSELVILDAQDITAPAIATLKL--KHHIPYPLHGSW 487 (490)
T ss_dssp TEEEEEECTTTEECCCCEEEECTTCCSTTCEEEEEEEEETTT-TEEEEEEEETTCTTSCCSEEEEC--SSCCCCCCCEEE
T ss_pred CCEEEEECCCCccccCCEEecCCCCCCCCCcEEEEEEEeCCC-CceeEEEEccCCCCcCceEEEeC--CCcCCCCccccc
Confidence 9999997 7999999999999999999999999999999864 569999999999994 888888 999999999999
Q ss_pred ccC
Q psy14636 440 FPH 442 (447)
Q Consensus 440 ~~~ 442 (447)
+++
T Consensus 488 v~~ 490 (490)
T 2biw_A 488 AQT 490 (490)
T ss_dssp EEC
T ss_pred cCC
Confidence 874
No 3
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=1.4e-105 Score=844.24 Aligned_cols=410 Identities=23% Similarity=0.342 Sum_probs=345.0
Q ss_pred CcccccceeeEEeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecCcE-EEEEEEecchHHHHHHhcCC
Q psy14636 3 NSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLV-TYQCKFIKSESYIKNHAARR 81 (447)
Q Consensus 3 ~~e~~~~~~~~v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G~v-~y~~R~v~T~~~~~e~~~g~ 81 (447)
+.|+.++..|+|+|+||+||+|||||||||+.+.. ..++||||||||||+|+|+||+| +|+||||||++|++|+++|+
T Consensus 55 v~ee~~~~~l~V~G~IP~~L~Gt~~RNGpnP~f~~-~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr 133 (529)
T 3npe_A 55 VGERPPVHELPVSGRIPPFIDGVYARNGANPCFDP-VAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGR 133 (529)
T ss_dssp CCCEEEEESCCEEECCCTTCEEEEEECCBCCSSCC-SSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTS
T ss_pred ccccCCcccceEeecCCccCCceEEEecCCcCcCC-cCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCC
Confidence 46777777899999999999999999999974322 45689999999999999999999 99999999999999999999
Q ss_pred ceeee-ccCCCCCCCcchHHHHHH-----hh---cCC--CCCCceeeeeecCCEEEEEecCCceEEe--CCC-CCceeee
Q psy14636 82 IVVTG-FGTRFVPDPCASIFQRIA-----TL---FKP--GSDNTLVSVYPIQDQVYALGDSNYMHRI--DPA-TLDTLGK 147 (447)
Q Consensus 82 ~~~~~-fg~~~~~~p~~~~~~~~~-----~~---~~~--~~~~aNt~v~~~gg~llAl~E~~~p~~l--Dp~-TLeT~g~ 147 (447)
++|++ +|+.. +.+.+.|+. .. +.. .++||||||++|+||||||||++.||++ ||+ ||||+|+
T Consensus 134 ~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~ 209 (529)
T 3npe_A 134 PVFPKAIGELH----GHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGR 209 (529)
T ss_dssp CCSCCTTTTTT----SSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEE
T ss_pred ccccccccccc----ccchhhhhhhhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeee
Confidence 99976 55532 123333322 11 111 4689999999999999999999999988 995 9999999
Q ss_pred eecCCCCCCCCcCccceecC-CCCEEEEecccCCCCCcEEEEEe--------------c--CCcCCCCcCCCC-----CC
Q psy14636 148 IDLAGDVTILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCILQL--------------N--DAFSYPDLSHPP-----PP 205 (447)
Q Consensus 148 ~d~~~~l~~~~~tAHpk~Dp-tge~~~~~~~~~~~~~~~~~~~~--------------p--~~~hd~~~~~~~-----~~ 205 (447)
+||+|+|.. +||||||+|| |||+++|+|++... +.+.++++ | .|+|||+ +|++ ++
T Consensus 210 ~d~~g~l~~-~~tAHPk~Dp~TGel~~f~y~~~~~-p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFa-iTenyvVf~~~ 286 (529)
T 3npe_A 210 YDFDGQLGC-AMIAHPKLDPATGELHALSYDVIKR-PYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFA-ITENLVVVPDH 286 (529)
T ss_dssp CCGGGCCCS-CCCSCCEECTTTCCEEEEECCSSSS-CCCEEEEECTTCCBCCCEECCCSSCBCCCCCE-ECSSEEEEEEC
T ss_pred eccCCccCC-cccccCcCCCCCCcEEEEEeecCCC-CcEEEEEECCCCCEEEEEEEeCCCCceEeeEE-ecCCeEEEEeC
Confidence 999999985 7999999999 99999999987543 55666654 1 2999999 9998 89
Q ss_pred CCeeccccCC---------CCCceEEEEEECCCC--CeEEEEEcCceeEEEeeeeeecCC-CcEEEEEeeecCCchhhhh
Q psy14636 206 PPSLRFRDDI---------DMTSTIFHVLDKTNG--SVVHRFQADSFFYLHIINAYEDTN-DGIVVDICCYRNPAMLDCM 273 (447)
Q Consensus 206 p~~~~~~~~~---------~~~~t~~~vipR~~~--~~v~~~~~~~~~~~H~~NAyE~~~-g~Iv~D~~~~~~~~~~~~~ 273 (447)
|+++++.+|+ +++++||+||||+++ +.|+||++|+||+||++||||+++ |+||+|.|++.+.+.+..
T Consensus 287 Pl~~~~~~~~~g~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~- 365 (529)
T 3npe_A 287 QVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFN- 365 (529)
T ss_dssp SEEECGGGGTTTCCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCC-
T ss_pred CeEEcHHHHhCCCCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhh-
Confidence 9999988765 899999999999976 468999999999999999999853 488887777654332110
Q ss_pred hHHHhhccCCCCcccccCCCceEEEEEeCCCCCCCCCCcccceeec----CCCcCCCccCCCCCCCccceEEEEecCCCC
Q psy14636 274 YREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVIC----DVGCETPRMNGQHQGRSYTYFYAISADIDR 349 (447)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~~~~~~~~l~----~~~~EfP~in~~~~gr~yry~Y~~~~~~~~ 349 (447)
. ......++|+||+||+++|+ ++.+.|. +.++|||+||++|.||+|||+|+++.++ .
T Consensus 366 ------~------~~~~~~~~l~r~rl~l~~g~------~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~-~ 426 (529)
T 3npe_A 366 ------E------SDERLESVLTEIRLDARTGR------STRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEP-W 426 (529)
T ss_dssp ------S------SSSCCCCEEEEEEECTTTCC------EEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCS-T
T ss_pred ------c------cchhhccceEEEEEcCCCCC------EEeEEecccccCccccCceEChhHcCCccceEEEeccCC-C
Confidence 0 01234678999999999985 5556665 4899999999999999999999987654 3
Q ss_pred CCCCcEEEEEeeCCceeEEc-CCCCCCCccEEeeCCC----CCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCceEEEE
Q psy14636 350 DNPGTLIKVNVQNNTCKSWS-QKDVYPSEPVFVATPN----ARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVN 424 (447)
Q Consensus 350 ~~~~~i~k~D~~tg~~~~w~-~~~~~~~EPvFVPrp~----~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~var~~ 424 (447)
..+++|+|+|++||+.+.|. ++++|+|||||||||+ +++|||||||++|+|..++ +|+|+||||++|+++||++
T Consensus 427 ~~~~~l~K~D~~tg~~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~~~-~S~LlILDA~~l~~vArv~ 505 (529)
T 3npe_A 427 PKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAG-TSELLVVNAADMRLEATVQ 505 (529)
T ss_dssp TSCCEEEEEETTTCCEEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSSCC-CEEEEEEETTTTEEEEEEE
T ss_pred CCcceEEEEecCCCceEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECCCC-cEEEEEEeCCCCccceEEE
Confidence 46799999999999987764 8999999999999999 8999999999999998755 5999999999999999999
Q ss_pred EeCCCCCCCCCceeeccCC
Q psy14636 425 FTTPTPVPKCLHGWYFPHE 443 (447)
Q Consensus 425 l~lP~~vP~gfHG~w~~~~ 443 (447)
| |++||+||||+|++.+
T Consensus 506 L--P~rvP~GfHG~wv~~~ 522 (529)
T 3npe_A 506 L--PSRVPFGFHGTFITGQ 522 (529)
T ss_dssp E--SSCCCCCSCEEEEEHH
T ss_pred C--CCCCCCCccccccCHH
Confidence 9 9999999999999854
No 4
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=59.81 E-value=24 Score=32.53 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=29.8
Q ss_pred eeeecCCEEEEE-ecCCceEEeCCCCCceeeeeecCC
Q psy14636 117 SVYPIQDQVYAL-GDSNYMHRIDPATLDTLGKIDLAG 152 (447)
Q Consensus 117 ~v~~~gg~llAl-~E~~~p~~lDp~TLeT~g~~d~~~ 152 (447)
.+..++++||.+ |..+.-+.+|+.||+.++.+.+.+
T Consensus 69 Gi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~ 105 (243)
T 3mbr_X 69 GIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG 105 (243)
T ss_dssp EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS
T ss_pred EEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC
Confidence 356678999988 567789999999999999887754
No 5
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=34.24 E-value=1.7e+02 Score=28.10 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=44.8
Q ss_pred ceEEEEecCCCCCCCCcEEEEEeeCCceeEEcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEe-CC--C-CCceEEEEEe
Q psy14636 338 TYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLW-SH--H-PTRVSLLVLN 413 (447)
Q Consensus 338 ry~Y~~~~~~~~~~~~~i~k~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d-~~--~-~~~s~l~IlD 413 (447)
+++|.+........ ..|..+|..|++...-...+..+ +..|=| |..+|.+.-.. .. . .....+.++|
T Consensus 33 ~~~yv~~~~~~~~~-~~v~v~D~~t~~~~~~i~~g~~p-~i~~sp-------Dg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 33 RRSYINLPAHHSAI-IQQWVLDAGSGSILGHVNGGFLP-NPVAAH-------SGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CEEEEeCCcccCCc-cEEEEEECCCCeEEEEecCCCCC-CeEECC-------CCCEEEEEeccccccccCCCCCeEEEEE
Confidence 56887543111101 17899999998865333444434 555544 44566543110 00 0 1113577999
Q ss_pred cCCcCceEEEEE
Q psy14636 414 ARTMQELGRVNF 425 (447)
Q Consensus 414 A~~l~~var~~l 425 (447)
+.+++.++++.+
T Consensus 104 ~~t~~~~~~i~~ 115 (373)
T 2mad_H 104 PVTFLPIADIEL 115 (373)
T ss_pred CCCCcEEEEEEC
Confidence 999999998887
No 6
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=33.85 E-value=43 Score=31.22 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=30.0
Q ss_pred eeeecCCEEEEEe-cCCceEEeCCCCCceeeeeecCC
Q psy14636 117 SVYPIQDQVYALG-DSNYMHRIDPATLDTLGKIDLAG 152 (447)
Q Consensus 117 ~v~~~gg~llAl~-E~~~p~~lDp~TLeT~g~~d~~~ 152 (447)
.|...+++||.++ ..+.-+.+|+.||+.++.+.+.+
T Consensus 91 Git~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~ 127 (262)
T 3nol_A 91 GISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG 127 (262)
T ss_dssp EEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC
Confidence 3566799999885 57789999999999999988764
No 7
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=31.40 E-value=94 Score=30.94 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=46.0
Q ss_pred ceEEEEecCCCCCCCCcEEEEEeeCCceeEEcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCC----CCceEEEEEe
Q psy14636 338 TYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHH----PTRVSLLVLN 413 (447)
Q Consensus 338 ry~Y~~~~~~~~~~~~~i~k~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~----~~~s~l~IlD 413 (447)
+++|.+........ +.|..+|+.|++...-..-+..+ . ++..| |..+|.+.-..... +....+.|+|
T Consensus 85 ~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~vG~~P-g--ia~Sp-----Dgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 85 RRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDGGFLP-H--PVAAE-----DGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp TEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEECSSC-E--EEECT-----TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CEEEEECCCcCCCC-CeEEEEECCCCEEEEEEECCCCC-c--eEECC-----CCCEEEEEeccccccccCCCCCEEEEEE
Confidence 44776553221111 79999999999875433333434 3 33332 33455543211000 0125799999
Q ss_pred cCCcCceEEEEE
Q psy14636 414 ARTMQELGRVNF 425 (447)
Q Consensus 414 A~~l~~var~~l 425 (447)
+.+++.++++.+
T Consensus 156 ~~t~~vv~~I~v 167 (426)
T 3c75_H 156 PVTFLPIADIEL 167 (426)
T ss_dssp TTTCCEEEEEEE
T ss_pred CCCCcEEEEEEC
Confidence 999999999998
No 8
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=30.87 E-value=46 Score=31.15 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=29.5
Q ss_pred eeecCCEEEEEe-cCCceEEeCCCCCceeeeeecCC
Q psy14636 118 VYPIQDQVYALG-DSNYMHRIDPATLDTLGKIDLAG 152 (447)
Q Consensus 118 v~~~gg~llAl~-E~~~p~~lDp~TLeT~g~~d~~~ 152 (447)
+...+++||.++ ..+.-+.+|+.||+.++.+.+.+
T Consensus 101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence 566889999874 57789999999999999988754
No 9
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=30.34 E-value=2.2e+02 Score=29.25 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=55.9
Q ss_pred EEEEEeCCCCCCCCCCcccceeecCCCcCCCccCCCCCCCccceEEEEecCCCCCCCCcEEEEEee--CCceeEEcCCCC
Q psy14636 296 LRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQ--NNTCKSWSQKDV 373 (447)
Q Consensus 296 ~R~~idl~~g~~~~~~~~~~~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~~i~k~D~~--tg~~~~w~~~~~ 373 (447)
.-+.||+.+++ +..+.-.........+++ .-||+|.+.. -+.|..+|+. |++...-...+
T Consensus 178 ~V~viD~~t~~------v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~------dg~V~viD~~~~t~~~v~~i~~G- 239 (567)
T 1qks_A 178 QIALIDGSTYE------IKTVLDTGYAVHISRLSA-----SGRYLFVIGR------DGKVNMIDLWMKEPTTVAEIKIG- 239 (567)
T ss_dssp EEEEEETTTCC------EEEEEECSSCEEEEEECT-----TSCEEEEEET------TSEEEEEETTSSSCCEEEEEECC-
T ss_pred eEEEEECCCCe------EEEEEeCCCCccceEECC-----CCCEEEEEcC------CCeEEEEECCCCCCcEeEEEecC-
Confidence 45567777764 222222222223334444 3368886542 2579999996 66543221222
Q ss_pred CCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCceEEEEE
Q psy14636 374 YPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNF 425 (447)
Q Consensus 374 ~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~var~~l 425 (447)
.+|.-+.=..-..-|.-||++.-.. ...+.|+|+.+++.+.++.+
T Consensus 240 --~~P~~ia~s~~~~pDGk~l~v~n~~-----~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 240 --SEARSIETSKMEGWEDKYAIAGAYW-----PPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp --SEEEEEEECCSTTCTTTEEEEEEEE-----TTEEEEEETTTCCEEEEEEC
T ss_pred --CCCceeEEccccCCCCCEEEEEEcc-----CCeEEEEECCCCcEEEEEec
Confidence 3454433210000144587764322 24788999999998887765
No 10
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=24.42 E-value=91 Score=28.97 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=30.4
Q ss_pred eeecCCEEEEE-ecCCceEEeCCCCCceeeeeecCCCC
Q psy14636 118 VYPIQDQVYAL-GDSNYMHRIDPATLDTLGKIDLAGDV 154 (447)
Q Consensus 118 v~~~gg~llAl-~E~~~p~~lDp~TLeT~g~~d~~~~l 154 (447)
+-+.+|+|||- |+.+..+.|||.|.+-++..++.+..
T Consensus 177 Le~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~ 214 (262)
T 3nol_A 177 LEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGIL 214 (262)
T ss_dssp EEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGG
T ss_pred eEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCc
Confidence 33457898866 57889999999999999999998754
No 11
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=21.84 E-value=87 Score=28.71 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=30.2
Q ss_pred ecCCEEEEE-ecCCceEEeCCCCCceeeeeecCCCCC
Q psy14636 120 PIQDQVYAL-GDSNYMHRIDPATLDTLGKIDLAGDVT 155 (447)
Q Consensus 120 ~~gg~llAl-~E~~~p~~lDp~TLeT~g~~d~~~~l~ 155 (447)
+.+|+|||- |+++....|||.|.+-++..++.+..+
T Consensus 157 ~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~ 193 (243)
T 3mbr_X 157 WVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVP 193 (243)
T ss_dssp EETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGST
T ss_pred EeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcc
Confidence 358998865 689999999999999999999887543
No 12
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=21.43 E-value=40 Score=21.71 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=11.6
Q ss_pred CCCCccEEeeCCCCC
Q psy14636 373 VYPSEPVFVATPNAR 387 (447)
Q Consensus 373 ~~~~EPvFVPrp~~~ 387 (447)
....||-+||.|.++
T Consensus 2 ~~~dep~~IpDP~a~ 16 (38)
T 3ici_C 2 SHMDEPKFIPDPNAE 16 (38)
T ss_pred CcccccccccCCCCC
Confidence 345799999999864
Done!