Query psy14636
Match_columns 447
No_of_seqs 131 out of 1117
Neff 7.7
Searched_HMMs 13730
Date Fri Aug 16 16:46:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14636.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14636hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ja2 b.92.1.6 (A:420-480) N 42.1 2.6 0.00019 28.5 0.1 36 406-443 7-42 (61)
2 d1qksa2 b.70.2.1 (A:136-567) C 25.5 26 0.0019 32.1 4.3 34 391-425 378-412 (432)
3 d1zaka2 g.41.2.1 (A:128-158) M 24.1 16 0.0012 21.0 1.4 14 164-177 3-17 (31)
4 d1k91a_ b.104.1.1 (A:) Calreti 20.8 19 0.0014 21.5 1.4 12 376-387 1-12 (37)
5 d1hzua2 b.70.2.1 (A:118-543) C 16.7 44 0.0032 30.0 3.7 32 393-425 375-406 (426)
6 d1pbyb_ b.69.2.2 (B:) Quinohem 16.4 1.3E+02 0.0095 24.4 6.8 60 353-425 260-319 (337)
7 d2bnga1 d.17.4.8 (A:13-144) Un 13.7 67 0.0049 23.6 3.6 28 50-77 94-121 (132)
8 d1jmxb_ b.69.2.2 (B:) Quinohem 13.2 1E+02 0.0076 25.2 5.2 61 353-428 272-332 (346)
9 d3dm8a1 d.17.4.20 (A:1-135) Un 12.3 1E+02 0.0075 22.4 4.3 25 50-74 105-129 (135)
10 d1l0qa2 b.69.2.3 (A:1-301) Sur 11.7 2.4E+02 0.017 22.2 7.1 70 338-425 2-72 (301)
No 1
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=42.12 E-value=2.6 Score=28.48 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=29.6
Q ss_pred ceEEEEEecCCcCceEEEEEeCCCCCCCCCceeeccCC
Q psy14636 406 RVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHE 443 (447)
Q Consensus 406 ~s~l~IlDA~~l~~var~~l~lP~~vP~gfHG~w~~~~ 443 (447)
-.+|+|||..++.+-|..+- |+..+-|++..|+...
T Consensus 7 ~ADlvvfDp~~i~d~~~~~~--~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATVADSATFEH--PTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTCBCCCCSSS--TTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHccCcccccc--cccccceeEEEEECCE
Confidence 36899999999987666655 9999999999998753
No 2
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=25.49 E-value=26 Score=32.07 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=24.2
Q ss_pred Ce-EEEEEEEeCCCCCceEEEEEecCCcCceEEEEE
Q psy14636 391 EG-VLLSVLLWSHHPTRVSLLVLNARTMQELGRVNF 425 (447)
Q Consensus 391 DG-~Ll~~v~d~~~~~~s~l~IlDA~~l~~var~~l 425 (447)
|| +|++.+....+. .+.++|+|++++++..+++-
T Consensus 378 DG~~v~~S~~~~~~~-~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 378 DGTEVWFSVWNGKDQ-ESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp TSSEEEEEEECCTTS-CCEEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEEecCCCC-CCcEEEEECCCceEEeEecC
Confidence 44 554445454333 37999999999999888876
No 3
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=24.07 E-value=16 Score=20.97 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=10.8
Q ss_pred eecC-CCCEEEEecc
Q psy14636 164 LTTS-DGETFNLGVT 177 (447)
Q Consensus 164 k~Dp-tge~~~~~~~ 177 (447)
++|| ||++|-..++
T Consensus 3 R~DP~TG~iYH~~f~ 17 (31)
T d1zaka2 3 RLDPVTGKIYHLKYS 17 (31)
T ss_dssp EECTTTCCEEESSSS
T ss_pred cCCCCCCcEeEEecC
Confidence 5799 9999877554
No 4
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.76 E-value=19 Score=21.49 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=10.4
Q ss_pred CccEEeeCCCCC
Q psy14636 376 SEPVFVATPNAR 387 (447)
Q Consensus 376 ~EPvFVPrp~~~ 387 (447)
|||-|||.|.++
T Consensus 1 ~eP~~IpDp~A~ 12 (37)
T d1k91a_ 1 GKPEHIPDPDAK 12 (37)
T ss_dssp CCCSEEECSSCC
T ss_pred CCccccCCCCCC
Confidence 699999999875
No 5
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.70 E-value=44 Score=29.96 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=22.9
Q ss_pred EEEEEEEeCCCCCceEEEEEecCCcCceEEEEE
Q psy14636 393 VLLSVLLWSHHPTRVSLLVLNARTMQELGRVNF 425 (447)
Q Consensus 393 ~Ll~~v~d~~~~~~s~l~IlDA~~l~~var~~l 425 (447)
+|++.+...... .+.+.|+|+++++.+.+++-
T Consensus 375 ~i~vs~~~~~~~-~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 375 EVWFSVWNGKND-SSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp EEEEEECCCTTS-CCEEEEEETTTTEEEEEECC
T ss_pred EEEEEEecCCCC-CCeEEEEECCCCeEEEEECC
Confidence 565445443333 47899999999999888765
No 6
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=16.41 E-value=1.3e+02 Score=24.38 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=36.1
Q ss_pred CcEEEEEeeCCceeEEcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCceEEEEE
Q psy14636 353 GTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNF 425 (447)
Q Consensus 353 ~~i~k~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~var~~l 425 (447)
+.|..+|+.+++...-...+..+.-..|=| |.-+|.+ -. .+ +.+.|+|+++++.+.++++
T Consensus 260 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-------dG~~l~v--~~--~~--~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 260 NVLESFDLEKNASIKRVPLPHSYYSVNVST-------DGSTVWL--GG--AL--GDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECT-------TSCEEEE--ES--BS--SEEEEEETTTCCEEEEEEC
T ss_pred ccEEEEECCCCcEEEEEcCCCCEEEEEECC-------CCCEEEE--Ee--CC--CcEEEEECCCCcEEEEEEC
Confidence 467888888887644322222121222322 3345543 22 12 4699999999999999988
No 7
>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.73 E-value=67 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.4
Q ss_pred ceEEEEEecCcEEEEEEEecchHHHHHH
Q psy14636 50 LLHRFKISSGLVTYQCKFIKSESYIKNH 77 (447)
Q Consensus 50 mv~~~~~~~G~v~y~~R~v~T~~~~~e~ 77 (447)
+++-|+|+|||+.+..-|..+..+.+.-
T Consensus 94 ~~~~~~v~dGkI~~~~~y~D~~~~~~~l 121 (132)
T d2bnga1 94 VCGVFEVDDGRITLWRDYFDVYDMFKGL 121 (132)
T ss_dssp EEEEEEEETTEEEEEEEECCHHHHHHHH
T ss_pred EEEEEEEcCCEEEEEEEEeCHHHHHHHH
Confidence 4677888899988888888887776553
No 8
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=13.17 E-value=1e+02 Score=25.21 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=37.8
Q ss_pred CcEEEEEeeCCceeEEcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCceEEEEEeCC
Q psy14636 353 GTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTP 428 (447)
Q Consensus 353 ~~i~k~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~var~~l~lP 428 (447)
+.|..+|+.+++...-...+..+.--.|-| |.-+|.+ -. .+ ..+.|+|+++++.+.++++ |
T Consensus 272 ~~v~v~d~~~~~~~~~~~~~~~~~~va~s~-------DG~~l~v--~~--~d--~~v~v~D~~t~~~i~~i~~--p 332 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKAANLDHTYYCVAFDK-------KGDKLYL--GG--TF--NDLAVFNPDTLEKVKNIKL--P 332 (346)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECS-------SSSCEEE--ES--BS--SEEEEEETTTTEEEEEEEC--S
T ss_pred CeEEEEECCCCcEEEEEcCCCCEEEEEEcC-------CCCEEEE--Ee--CC--CcEEEEECccCCEEEEEEC--C
Confidence 567888888887543222222233333433 3334443 22 12 4799999999999999998 7
No 9
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=12.30 E-value=1e+02 Score=22.43 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=18.9
Q ss_pred ceEEEEEecCcEEEEEEEecchHHH
Q psy14636 50 LLHRFKISSGLVTYQCKFIKSESYI 74 (447)
Q Consensus 50 mv~~~~~~~G~v~y~~R~v~T~~~~ 74 (447)
.+|-|+|+||++..-.-|+.|-...
T Consensus 105 ~~~~~~~~dGkI~~~~~y~D~~~~~ 129 (135)
T d3dm8a1 105 MALFTQFQNGRLTNLRMVLDTFDLV 129 (135)
T ss_dssp EEEEEEEETTEEEEEEEEECHHHHH
T ss_pred EEEEEEEECCEEEEEEEEeCHHHHH
Confidence 4677888999988777777876653
No 10
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=11.71 E-value=2.4e+02 Score=22.19 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=41.3
Q ss_pred ceEEEEecCCCCCCCCcEEEEEeeCCceeE-EcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCC
Q psy14636 338 TYFYAISADIDRDNPGTLIKVNVQNNTCKS-WSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNART 416 (447)
Q Consensus 338 ry~Y~~~~~~~~~~~~~i~k~D~~tg~~~~-w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~ 416 (447)
-|+|-+... -+.|..+|++|++... +.. + ..|.=|. -..|..+|++ .+.. + ..+.|+|..+
T Consensus 2 ~~~yV~~~~-----~~~v~v~D~~t~~~~~~i~~-g---~~p~~va----~spdG~~l~v--~~~~-~--~~i~v~d~~t 63 (301)
T d1l0qa2 2 TFAYIANSE-----SDNISVIDVTSNKVTATIPV-G---SNPMGAV----ISPDGTKVYV--ANAH-S--NDVSIIDTAT 63 (301)
T ss_dssp EEEEEEETT-----TTEEEEEETTTTEEEEEEEC-S---SSEEEEE----ECTTSSEEEE--EEGG-G--TEEEEEETTT
T ss_pred eEEEEEECC-----CCEEEEEECCCCeEEEEEEC-C---CCceEEE----EeCCCCEEEE--EECC-C--CEEEEEECCC
Confidence 478864432 2579999999998643 321 1 2343221 1224457753 2321 2 4799999998
Q ss_pred cCceEEEEE
Q psy14636 417 MQELGRVNF 425 (447)
Q Consensus 417 l~~var~~l 425 (447)
.+.+.++..
T Consensus 64 ~~~~~~~~~ 72 (301)
T d1l0qa2 64 NNVIATVPA 72 (301)
T ss_dssp TEEEEEEEC
T ss_pred Cceeeeeec
Confidence 887776655
Done!