RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14636
(447 letters)
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic
membrane protein, sensory transduction, vision,
isomerase, non-heme iron protein; 1.90A {Bos taurus}
PDB: 3fsn_A
Length = 533
Score = 310 bits (796), Expect = e-101
Identities = 138/518 (26%), Positives = 234/518 (45%), Gaps = 85/518 (16%)
Query: 4 SEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTY 63
E+ P+ V G IP W+ G L+R GPG + VG E F HLFD LLH+F G VTY
Sbjct: 20 EELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTY 79
Query: 64 QCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKP--GSDNTLVSVYPI 121
+FI++++Y++ +RIV+T FGT PDPC +IF R + F+ +DN LV++YP+
Sbjct: 80 HRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPV 139
Query: 122 QDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTL-RP 180
+ YA ++N++ +++P TL+T+ ++DL V++ T+HP +DG +N+G +
Sbjct: 140 GEDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKN 199
Query: 181 TGPRYCILQLNDAFSY---------PDLSHPPPPPPSLRFRDDIDMTS------------ 219
Y I+++ + + P + +T
Sbjct: 200 FSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKI 259
Query: 220 ---------------------------TIFHVLDKTNGS-VVHRFQADSFFYLHIINAYE 251
H+ DK + ++++ F H IN YE
Sbjct: 260 NLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYE 319
Query: 252 DTNDGIVVDICCYRNPAML-DCMYREALKNIHSTPR--YAQMFRARPLRFRLDLASPRTA 308
D ++ ++VD+CC++ + + +Y L+ + + + R+ L L +
Sbjct: 320 D-HEFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKAD 378
Query: 309 P--------------------TGKVRPSVIC---DVGCETPRMNGQHQG-RSYTYFYAIS 344
T + P V+ E P++N Q G + YTY Y +
Sbjct: 379 TGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLG 438
Query: 345 ADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHP 404
+ P L K+NV+ W + D YPSEP+FV+ P+A +ED+GV+LSV++
Sbjct: 439 L--NHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAG 496
Query: 405 TRVS-LLVLNARTMQELGRVNFTTPTPVPKCLHGWYFP 441
+ + LL+LNA+ + E+ R +P HG +
Sbjct: 497 QKPAYLLILNAKDLSEVARAEV--EINIPVTFHGLFKK 532
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid
cleavage, retinal forma oxidoreductase, dioxygenase;
HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Length = 490
Score = 299 bits (767), Expect = 4e-97
Identities = 104/481 (21%), Positives = 183/481 (38%), Gaps = 72/481 (14%)
Query: 9 PVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISS-GLVTYQCKF 67
VEG IP + G L RNGPG +G+ H FD G++ FK G V +Q KF
Sbjct: 33 YWVEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKF 92
Query: 68 IKSESYIKNHAARRIVVTG-FGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVY 126
++++ Y++ A +++ G FG++ +IF + ++ D++
Sbjct: 93 VRTQGYVEEQKAGKMIYRGVFGSQPAGGWLKTIFDL------RLKNIANTNITYWGDRLL 146
Query: 127 ALGDSNYMHRIDPATLDTLGKIDLAGDVTI-LHQTSHPL-----TTSDGETFNLGVTLRP 180
AL + HR++P+ L T+G DL G + ++HP T G+ + +++
Sbjct: 147 ALWEGGQPHRLEPSNLATIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKS 206
Query: 181 TGPRYCILQLNDA-----------FSYPDLSHP--------------------------P 203
+ L D F H
Sbjct: 207 SLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYLFGLR 266
Query: 204 PPPPSLRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICC 263
++F D ++ + G + R + F H NA+E+ N I++D C
Sbjct: 267 GAGECVQFHPDKP---AQIILVPRDGGEIK-RIPVQAGFVFHHANAFEE-NGKIILDSIC 321
Query: 264 YRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGC 323
Y + +D + + + + RF +D A V ++ C
Sbjct: 322 YNSLPQVDTDGDFR------STNFDNLDPGQLWRFTIDPA------AATVEKQLMVSRCC 369
Query: 324 ETPRMNGQHQGRSYTYFYAISADIDRDNP--GTLIKVNVQNNTCKSWSQKD-VYPSEPVF 380
E P ++ Q GR Y Y Y +A N ++KV++++ T S + EP+F
Sbjct: 370 EFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLESGTETLRSFAPHGFAGEPIF 429
Query: 381 VATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYF 440
V P ED+G LL + ++ R L++L+A+ + +P LHG +
Sbjct: 430 VPRPGGVAEDDGWLLCL-IYKADLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSWA 488
Query: 441 P 441
Sbjct: 489 Q 489
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta
propeller, abscisic acid, non iron, oxidoreductase;
3.20A {Zea mays}
Length = 529
Score = 213 bits (544), Expect = 9e-64
Identities = 97/480 (20%), Positives = 150/480 (31%), Gaps = 71/480 (14%)
Query: 13 TVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSG-LVTYQCKFIKSE 71
V G IP +IDGV RNG + HLFD G++H +I +G +Y C+F ++
Sbjct: 65 PVSGRIPPFIDGVYARNGAN-PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETA 123
Query: 72 SYIKNHAARRIVVTGFGTRFVPDP----CASIFQRIATLFKPGSDNTLV---SVYPIQDQ 124
+ A R V A + R A S T V + +
Sbjct: 124 RLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGR 183
Query: 125 VYAL---GDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLG------ 175
+ A+ ++ D L+T+G+ D G + L + GE L
Sbjct: 184 LLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKR 243
Query: 176 -----VTLRPTG----------------------PRYCILQLNDAFSYPDLSHPPPPPPS 208
RP G ++ D L
Sbjct: 244 PYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVP--DHQVVFKLQEMLRGGSP 301
Query: 209 LRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPA 268
+ + + S + F H+ NA+ED G VV I PA
Sbjct: 302 VVLDAAKTSRFGVLPK-HAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPA 360
Query: 269 MLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRM 328
+ + RLD + R+ T + V E +
Sbjct: 361 D------------SIFNESDERLESVLTEIRLDARTGRS--TRRAVLPPSQQVNLEVGMV 406
Query: 329 NGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKD-VYPSEPVFV----AT 383
N GR Y Y A+ KV++ + + + EP FV A
Sbjct: 407 NRNLLGRETRYAYLAVAE-PWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAA 465
Query: 384 PNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHE 443
+ R ED+G +L+ + LLV+NA M+ V P+ VP HG + +
Sbjct: 466 AHPRGEDDGYVLTFVHDERA-GTSELLVVNAADMRLEATVQL--PSRVPFGFHGTFITGQ 522
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 66/319 (20%), Positives = 101/319 (31%), Gaps = 95/319 (29%)
Query: 160 TSHPLTTSDGETFNLGVTLR-PTGPRYCILQLNDAFSYPDLSHPPPPPPSLRFRDDIDMT 218
++ PLT S G +L L PT + QL + F+ L P P+ F D + T
Sbjct: 5 STRPLTLSHG---SLEHVLLVPTASFFIASQLQEQFN-KIL-----PEPTEGFAADDEPT 55
Query: 219 STI-----F--HVLDKTNGSVVHRFQADSFFYLHIINAYEDT----NDGI--VVDICCYR 265
+ F +V S V +F + +E+ ND I +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQ---VLNLCLTEFENCYLEGND-IHALA------ 105
Query: 266 NPAMLDCMYREALKNIHSTPR-Y--AQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVG 322
A L L + Y A++ RP + + A R G + I
Sbjct: 106 --AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI---- 159
Query: 323 CETPRMNGQHQGRSYTYF------YAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPS 376
G QG + YF Y + D LIK + + T + +
Sbjct: 160 -----FGG--QGNTDDYFEELRDLYQTYHVLVGD----LIKFSAE--TLSELI-RTTLDA 205
Query: 377 EPVFVATPNARKEDEGVLLSVLLWSHHPTR-----------VSL-------LVLNARTMQ 418
E VF +G L++L W +P+ +S L T +
Sbjct: 206 EKVF---------TQG--LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 419 ELGRVNFTTPTPVPKCLHG 437
LG TP + L G
Sbjct: 255 LLG----FTPGELRSYLKG 269
Score = 40.8 bits (95), Expect = 0.001
Identities = 60/403 (14%), Positives = 113/403 (28%), Gaps = 123/403 (30%)
Query: 39 ESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNH-AARRIVVTGFGTRFVPDPCA 97
F++ + +H + L +K++ IKN+ AR + R
Sbjct: 89 TEFENCYLEGNDIHAL-AAKLLQENDTTLVKTKELIKNYITARIMA-----KRPFDKKSN 142
Query: 98 SIFQRIATLFKPGSDNTLVSVYPI---QDQVYALGDSN-YMHRIDPATLDTLGKIDLAGD 153
S LF+ + + I Q G+++ Y + L
Sbjct: 143 SA------LFRAVGEGN-AQLVAIFGGQ------GNTDDY--------FEELRD------ 175
Query: 154 VTILHQTSHP----LTTSDGETFNLGVTLRPTGPRYC-----ILQ-LNDAFSYPDLSHPP 203
L+QT H L ET + + + IL+ L + + PD +
Sbjct: 176 ---LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 204 PPPPSLRFRDDIDMTS-----TIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIV 258
P S I + +L T G + + + H G+V
Sbjct: 233 SIPISCPL---IGVIQLAHYVVTAKLLGFTPGELRSYLKGAT---GHS--------QGLV 278
Query: 259 VDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVI 318
+ A D + ++ F + + P + PS++
Sbjct: 279 TAVAI----AETDS-WESFFVSVRKAITVL---------FFIGVRCYEAYPNTSLPPSIL 324
Query: 319 ---CDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLI-KVNVQNNTCKSWSQKDVY 374
+ P + +IS ++ ++ + K N +
Sbjct: 325 EDSLENNEGVP-----------SPMLSIS-NLTQEQVQDYVNKTN-----------SHLP 361
Query: 375 PSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSL--LVLNAR 415
+ V ++ N V+ S P SL L L R
Sbjct: 362 AGKQVEISLVNGA--KNLVV------SGPP--QSLYGLNLTLR 394
Score = 33.5 bits (76), Expect = 0.15
Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 68/207 (32%)
Query: 1 QDNSEVDQ--P-----VQGTVEGVIPSWIDGV-------------LIRNGPGSWNV-GE- 38
+D+ E ++ P + + + +++ L+ NG + V G
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPP 383
Query: 39 ESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVP----- 93
+S L + L + K SGL Q + I + R++ F RF+P
Sbjct: 384 QSLYGL---NLTLRKAKAPSGL--DQSR-------IP-FSERKLK---FSNRFLPVASPF 427
Query: 94 ------DPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGK 147
I + + +N + IQ VY D + D L
Sbjct: 428 HSHLLVPASDLINKDLV------KNNVSFNAKDIQIPVYDTFDGS-----DLRVLSG--- 473
Query: 148 IDLAGDVT--ILHQTSH-PLTTSDGET 171
++ + I+ TT T
Sbjct: 474 -SISERIVDCIIRLPVKWETTTQFKAT 499
Score = 31.9 bits (72), Expect = 0.56
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 34/110 (30%)
Query: 338 TYFYAISADIDRDNPGTL-----------IKVNVQNNTCKSWSQKDVYPSEPVF-VATPN 385
TY ++I DI +NP L I+ N ++ + +E +F +
Sbjct: 1656 TYGFSIL-DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL-KTEKIFKEINEH 1713
Query: 386 ARK----EDEGVLLS-------VLLWSHHPTRVSLLVLNARTMQELGRVN 424
+ ++G+L + + L + ++ G +
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLME-----KAAF----EDLKSKGLIP 1754
Score = 28.9 bits (64), Expect = 4.6
Identities = 39/240 (16%), Positives = 65/240 (27%), Gaps = 85/240 (35%)
Query: 33 SWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYI----KNHAARRIVVTG-- 86
S E + S L + ++ V + + + N A+ +VV+G
Sbjct: 327 SLENNEGVPSPMLSISNL-TQEQVQD-YVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPP 383
Query: 87 -----FGTRF----VP---DPCASIF-QR---IATLFKPGSDNTLVSVYPIQDQVYALGD 130
P D F +R + F P V+ P
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP------VAS-PFH-------- 428
Query: 131 SNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLT-----TSDGETFNLGVTLRPTGPRY 185
S+ + PA+ D + K DL + + + T DG LR
Sbjct: 429 SHLL---VPAS-DLINK-DLVKNNVSFNAKD--IQIPVYDTFDGS------DLRVLSGS- 474
Query: 186 CILQLNDAFSYPDLSHPPPPPPSLRFRDDIDMTSTIF----HVLD------KTNGSVVHR 235
++ D R + +T H+LD G + HR
Sbjct: 475 ISERIVDCI----------------IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 1e-07
Identities = 40/241 (16%), Positives = 77/241 (31%), Gaps = 45/241 (18%)
Query: 209 LRFRDDIDMTSTIFHVLDKTNGSVVHRF--QADSFFYLHIINAYEDTNDGIVVDICCYRN 266
+ +D + T +F L +V +F + Y +++ + R
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----------QRQ 104
Query: 267 PAMLDCMYREALKNIHSTPR-YAQMFRARP---LRFRLDLASPRTAP---------TGKV 313
P+M+ MY E +++ + +A+ +R L+ R L R A +GK
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK- 163
Query: 314 RPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDV 373
+ + C + F+ + + P T++++
Sbjct: 164 --TWVALDVC---LSYKVQCKMDFKIFWLNLKNCNS--PETVLEM--LQKLLYQIDPN-- 212
Query: 374 YPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVL----NARTMQELG---RVNFT 426
+ S + R L LL P LLVL NA+ ++ T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 427 T 427
T
Sbjct: 272 T 272
Score = 45.2 bits (106), Expect = 4e-05
Identities = 70/476 (14%), Positives = 124/476 (26%), Gaps = 137/476 (28%)
Query: 36 VGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGT------ 89
V E++F FDC + K S L + I + R+ F T
Sbjct: 24 VFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVS-GTLRL----FWTLLSKQE 76
Query: 90 ----RFVPDPCAS----IFQRIATLFKPGS---------------DNTLVSVYPI--QDQ 124
+FV + + I T + S DN + + Y +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 125 VYALGDSNYMHRIDPATLDTL------GKIDLAGDVTILHQTSHPLTTSDGETF--NLGV 176
L + + PA + GK +A DV + D + F NL
Sbjct: 137 YLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKMDFKIFWLNLK- 190
Query: 177 TLRPTGPRYCILQLNDAF-----SYPDLSHPPPPPPSLRFRDDIDMTSTIFH-------- 223
P + L ++ S LR +
Sbjct: 191 --NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCL 247
Query: 224 -VLDKTNGSVVHRFQADSFFYLHIINAYED--------TNDGIVVDICCYRNPAMLDCMY 274
VL +V + ++F + T V D L
Sbjct: 248 LVLL----NVQNAKAWNAF----------NLSCKILLTTRFKQVTDF--------LSAAT 285
Query: 275 REALKNIHS----TPRYAQMFRARPLRFRL-DLASPRTAPTGKVRPSVICDVGCETPRMN 329
+ H TP + + L R DL PR P + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVL--TTNPRRLSIIA----ESI 337
Query: 330 GQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKE 389
+ + ++ D T+I+ ++ N + + ++ VF P
Sbjct: 338 RDGLATWDNWKH-----VNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVF---P----P 383
Query: 390 DEGVLLSVL--LWSHHPTRVSLLVLN---ARTMQELGRVNFTTPTPVPKCLHGWYF 440
+ +L +W ++V+N ++ E T + Y
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------IPSIYL 433
Score = 37.5 bits (86), Expect = 0.009
Identities = 57/364 (15%), Positives = 96/364 (26%), Gaps = 122/364 (33%)
Query: 34 WNVGE-ESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFV 92
N +F+ C KI L+T + K + ++ I +
Sbjct: 254 QNAKAWNAFN--LSC-------KI---LLTTRFKQVTD--FLSAATTTHISLDHHSMTLT 299
Query: 93 PDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAG 152
PD S+ + L P + + +P L + + G
Sbjct: 300 PDEVKSLLLKYLDC----RPQDL----PRE-----------VLTTNPRRLSIIAESIRDG 340
Query: 153 DVTI---LHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDAFSYPDLSHPPPPPPSL 209
T H LTT + N L P R + LS
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKM---------FDRLS--------- 379
Query: 210 RFRDDIDMTSTIFHVL--DKT------------NGSVVHRFQADSFFYLH---------- 245
F + + + ++ D S+V + +S +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 246 ---------IINAYE-----DTNDGIV--VD--ICCYRNPAMLDCMYREALKNIHSTPRY 287
I++ Y D++D I +D + + LKNI R
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-------IGHH--LKNIEHPERM 490
Query: 288 AQMFRARPLRFR-LDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSY-TYFYAISA 345
+FR L FR L+ K+R +N Q + Y Y
Sbjct: 491 T-LFRMVFLDFRFLE---------QKIRHDST-AWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 346 DIDR 349
+R
Sbjct: 540 KYER 543
Score = 32.1 bits (72), Expect = 0.45
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 31/100 (31%)
Query: 20 SWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYI-KNHA 78
+++ + + +WN + L L Y + YI N
Sbjct: 501 RFLEQKIRHDST-AWNASGSILNTLQQ-------------LKFY-------KPYICDNDP 539
Query: 79 AR-RIV------VTGFGTRFVPDPCASIFQRIATLFKPGS 111
R+V + + + + IA L
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLR-IA-LMAEDE 577
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.059
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 15/43 (34%)
Query: 275 REALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSV 317
++ALK + + L L + +AP ++ ++
Sbjct: 19 KQALKKLQA---------------SLKLYADDSAPALAIKATM 46
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study,
celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Length = 741
Score = 29.1 bits (66), Expect = 3.2
Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 18/122 (14%)
Query: 112 DNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGET 171
D L S + + A NY + L T + D + P
Sbjct: 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT----PQSADQPVFATPELP-------K 268
Query: 172 FNLGVTLRPTGPRYCILQLNDAFS------YPDLSHPPPPPPSLRFRDDIDMTSTIFHVL 225
G ++ G R+ ++ ++ +++ P + D + V
Sbjct: 269 RGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVG 327
Query: 226 DK 227
D+
Sbjct: 328 DQ 329
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas
campestris}
Length = 243
Score = 28.3 bits (62), Expect = 5.5
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 130 DSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRY 185
++ + RIDPA+ + IDL L + LT S + N G+ R
Sbjct: 168 LTSRIARIDPASGKVVAWIDLQA----LVPDADALTDSTNDVLN-GIAFDAEHDRL 218
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl
transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Length = 268
Score = 27.6 bits (60), Expect = 8.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 129 GDSNYMHRIDPATLDTLGKIDLAG 152
S+ + IDPAT +G ID +
Sbjct: 198 WHSSDVLEIDPATGTVVGVIDASA 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.435
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,132,912
Number of extensions: 426910
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 880
Number of HSP's successfully gapped: 18
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)