RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14636
         (447 letters)



>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 28.1 bits (62), Expect = 2.6
 Identities = 2/35 (5%), Positives = 10/35 (28%)

Query: 285 PRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVIC 319
               + F  +   +  + A+       +    ++ 
Sbjct: 169 REQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVT 203


>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
          beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
          [TaxId: 1902]}
          Length = 216

 Score = 26.5 bits (57), Expect = 5.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 80 RRIVVTGFGTRF 91
          RR+V+TG G R 
Sbjct: 1  RRVVITGVGVRA 12


>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
          {Synechocystis sp. [TaxId: 1143]}
          Length = 250

 Score = 26.4 bits (57), Expect = 5.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 80 RRIVVTGFGTRF 91
          +R+VVTG G   
Sbjct: 2  KRVVVTGLGAIT 13


>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
           5691]}
          Length = 291

 Score = 26.5 bits (58), Expect = 6.5
 Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 16/102 (15%)

Query: 205 PPPSLRFRDDIDMTSTIFH----VLDKTNGSVVHRFQADSFFYLHIINAYE--------D 252
           P  +  F + + M S ++H    ++ K  G        +  F   I +  E         
Sbjct: 32  PVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAI 91

Query: 253 TNDGIVVDICCYRNPAML----DCMYREALKNIHSTPRYAQM 290
              G         + A      +   +  L      P +   
Sbjct: 92  EEAGHRGKFAICMDCAASETYDEKKQQYNLTFKSPEPTWVTA 133


>d1eb7a1 a.3.1.5 (A:1-164) Di-heme cytochrome c peroxidase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 164

 Score = 25.9 bits (56), Expect = 7.4
 Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 7/88 (7%)

Query: 207 PSLRFRDDIDMTSTIFHVLDKTNGSVVH-RFQADSFFYLHIINAYEDTNDGIVVDICCYR 265
                 D++  +          N   V       + F+        +   G        +
Sbjct: 57  VGTGGADNVPTSVGHGWQKGPRNSPTVFNAVFNAAQFWDGRAKDLGEQAKG------PIQ 110

Query: 266 NPAMLDCMYREALKNIHSTPRYAQMFRA 293
           N   +    +   + + S P Y   FR 
Sbjct: 111 NSVEMHSTPQLVEQTLGSIPEYVDAFRK 138


>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
          {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 26.3 bits (57), Expect = 8.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 80 RRIVVTGFGTRF 91
          RR+VVTG G   
Sbjct: 2  RRVVVTGLGMLS 13


>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
          thermophilus [TaxId: 274]}
          Length = 249

 Score = 25.8 bits (56), Expect = 9.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 80 RRIVVTGFGTRF 91
          RR+VVTG G   
Sbjct: 2  RRVVVTGLGALT 13


>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 256

 Score = 26.0 bits (56), Expect = 9.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 80 RRIVVTGFGTRF 91
           R+VVTG+G   
Sbjct: 9  NRVVVTGYGVTS 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0417    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,769,232
Number of extensions: 84134
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 18
Length of query: 447
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,199,356
Effective search space: 430568804
Effective search space used: 430568804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)