BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1464
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 21 LIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVT 80
L+ RYL Y L LIRKQDA + ++ + +G +A DF+ +NW ++ + + G F +
Sbjct: 819 LLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFS 878
Query: 81 SIVKFCTKRISNELELTQAE 100
++++ T+R S+E EL Q E
Sbjct: 879 NLIQGVTRRFSSEFELQQLE 898
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 21 LIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVT 80
L+ RYL Y L LIRKQDA + ++ + +G +A DF+ +NW ++ + + G F +
Sbjct: 775 LLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFS 834
Query: 81 SIVKFCTKRISNELELTQAE 100
++++ T+R S+E EL Q E
Sbjct: 835 NLIQGVTRRFSSEFELQQLE 854
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 21 LIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVT 80
L+ RYL Y L LIRKQDA + ++ + +G +A DF+ +NW ++ + + G F +
Sbjct: 776 LLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFS 835
Query: 81 SIVKFCTKRISNELELTQAE 100
++++ T+R S+E EL Q E
Sbjct: 836 NLIQGVTRRFSSEFELQQLE 855
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 21 LIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVT 80
L+ RYL Y L LIRKQDA + ++ + +G +A DF+ +NW ++ + + G F +
Sbjct: 775 LLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFS 834
Query: 81 SIVKFCTKRISNELELTQAE 100
++++ T+R S+E EL Q E
Sbjct: 835 NLIQGVTRRFSSEFELQQLE 854
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 19 LSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQ 78
L ++ RYL Y L LIRKQDA ++ + +G + DF+ +NW ++ + G F
Sbjct: 774 LWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFS 833
Query: 79 VTSIVKFCTKRISNELELTQAE 100
+++++ T+R S E EL Q E
Sbjct: 834 FSNLIQAVTRRFSTEYELQQLE 855
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 26 LEYALTESL----IRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81
L++ L ES I+ Q+ P++ +L+ ++ VG+ +A FL NW+++ + F +
Sbjct: 778 LQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAH 837
Query: 82 IVKFCTKRISNELELTQAE 100
+V T + S L + +
Sbjct: 838 MVMGTTNQFSTRTRLEEVK 856
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 26 LEYALTESL----IRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81
L++ L ES I+ Q+ P++ +L+ ++ VG+ +A FL NW+++ + F +
Sbjct: 769 LQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAH 828
Query: 82 IVKFCTKRISNELELTQAE 100
+V T + S L + +
Sbjct: 829 MVMGTTNQFSTRTRLEEVK 847
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 26 LEYALTESL----IRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81
L++ L ES I+ Q+ P++ +L+ ++ VG+ +A FL NW+++ + F +
Sbjct: 820 LQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAH 879
Query: 82 IVKFCTKRISNELELTQAE 100
+V T + S L + +
Sbjct: 880 MVMGTTNQFSTRTRLEEVK 898
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 26 LEYALTESL----IRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81
L++ L ES I+ Q+ P++ +L+ ++ VG+ +A FL NW+++ + F +
Sbjct: 286 LQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAH 345
Query: 82 IVKFCTKRISNELELTQAE 100
+V T + S L + +
Sbjct: 346 MVMGTTNQFSTRTRLEEVK 364
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/79 (18%), Positives = 38/79 (48%)
Query: 22 IFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81
+ + +E + +I+ Q+ + +++ G +A DF+ NW + K F+ + +
Sbjct: 837 LLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRM 896
Query: 82 IVKFCTKRISNELELTQAE 100
I+ T S++ +L + +
Sbjct: 897 IISGTTAHFSSKDKLQEVK 915
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/79 (18%), Positives = 38/79 (48%)
Query: 22 IFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81
+ + +E + +I+ Q+ + +++ G +A DF+ NW + K F+ + +
Sbjct: 837 LLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRM 896
Query: 82 IVKFCTKRISNELELTQAE 100
I+ T S++ +L + +
Sbjct: 897 IISGTTAHFSSKDKLQEVK 915
>pdb|1CJA|A Chain A, Actin-Fragmin Kinase, Catalytic Domain From Physarum
Polycephalum
pdb|1CJA|B Chain B, Actin-Fragmin Kinase, Catalytic Domain From Physarum
Polycephalum
Length = 342
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 20 SLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRI 68
+++ L +T + + AP V + + +G +ALD + NN DR+
Sbjct: 157 NILLMELVRGITLNKLTTTSAPEVLTKSTMQQLGSLMALDVIVNNSDRL 205
>pdb|4HYC|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In P2 Space Group
pdb|4HYC|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In P2 Space Group
pdb|4HYC|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In P2 Space Group
pdb|4HYC|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In P2 Space Group
pdb|4HYC|E Chain E, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In P2 Space Group
pdb|4HYC|F Chain F, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In P2 Space Group
pdb|4HYC|G Chain G, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In P2 Space Group
pdb|4HYC|H Chain H, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In P2 Space Group
pdb|4HYD|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In C2221 Space Group
pdb|4HYD|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In C2221 Space Group
pdb|4HYD|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In C2221 Space Group
pdb|4HYD|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In C2221 Space Group
pdb|4HYG|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In C222 Space Group
pdb|4HYG|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In C222 Space Group
pdb|4HYG|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In C222 Space Group
pdb|4HYG|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
Protease In C222 Space Group
Length = 301
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 7 SRRFLIGLICYFLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNW 65
RRF+ I + L + F Y+ AL+ + A +L+ AV AL +LY W
Sbjct: 69 GRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAV---TALLYLYPEW 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,564,688
Number of Sequences: 62578
Number of extensions: 78562
Number of successful extensions: 231
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 14
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)