Query psy1464
Match_columns 107
No_of_seqs 143 out of 1010
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 16:51:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjo_A Endoplasmic reticulum a 99.9 1.3E-26 4.5E-31 167.1 13.1 104 3-106 266-370 (419)
2 3se6_A Endoplasmic reticulum a 99.9 5.9E-24 2E-28 165.7 12.3 104 3-106 817-921 (967)
3 2xdt_A Endoplasmic reticulum a 99.9 5.1E-23 1.7E-27 159.6 12.9 103 3-105 749-852 (897)
4 4fke_A Aminopeptidase N; zinc 99.9 2.1E-23 7.2E-28 161.9 8.8 104 3-106 757-861 (909)
5 1z5h_A Tricorn protease intera 99.8 1.7E-19 5.7E-24 138.3 8.5 100 3-106 648-748 (780)
6 2gtq_A Aminopeptidase N; alani 91.1 0.59 2E-05 36.7 6.5 76 5-85 744-826 (867)
7 3oao_A Uncharacterized protein 87.0 2.4 8.2E-05 26.2 5.9 54 51-105 41-94 (147)
8 3kat_A Nacht, LRR and PYD doma 82.4 2.2 7.6E-05 24.9 4.1 48 50-101 11-58 (107)
9 1wgn_A UBAP1, ubiquitin associ 53.3 9.3 0.00032 20.1 2.0 45 12-64 13-57 (63)
10 4fqn_A Malcavernin; helical do 51.4 32 0.0011 19.6 4.5 78 18-106 14-91 (98)
11 2gvs_A Chemosensory protein CS 50.5 35 0.0012 19.8 4.7 52 15-75 37-93 (109)
12 1j2j_B ADP-ribosylation factor 48.7 17 0.00057 17.8 2.4 23 1-23 3-26 (45)
13 2dak_A Ubiquitin carboxyl-term 43.1 28 0.00095 17.9 3.0 42 18-67 9-50 (63)
14 3fzg_A 16S rRNA methylase; met 42.2 6.5 0.00022 25.5 0.4 39 64-105 4-42 (200)
15 2dai_A Ubadc1, ubiquitin assoc 41.8 27 0.00094 19.2 2.9 40 18-65 29-68 (83)
16 1ioj_A APOC-I; apolipoprotein, 41.1 30 0.001 17.8 2.8 19 56-74 37-55 (57)
17 1wji_A Tudor domain containing 40.2 21 0.0007 18.5 2.2 39 18-64 9-47 (63)
18 2db0_A 253AA long hypothetical 39.4 40 0.0014 22.2 3.8 81 21-101 70-164 (253)
19 2ekk_A UBA domain from E3 ubiq 39.1 24 0.00082 16.9 2.2 38 18-64 9-46 (47)
20 3vrd_A FCCA subunit, flavocyto 36.9 65 0.0022 19.6 4.5 27 79-106 147-173 (174)
21 2g3q_A Protein YBL047C; endocy 36.9 11 0.00036 17.8 0.6 10 54-63 32-41 (43)
22 3mab_A Uncharacterized protein 36.7 44 0.0015 18.8 3.3 28 79-106 58-85 (93)
23 3e8t_A Takeout 1, takeout-like 35.5 19 0.00064 23.1 1.8 26 49-74 166-191 (220)
24 2keb_A DNA polymerase subunit 34.9 23 0.00077 20.4 1.9 28 6-33 30-58 (101)
25 2dkl_A Trinucleotide repeat co 34.8 26 0.00089 19.4 2.1 41 18-66 21-61 (85)
26 1k19_A Chemosensory protein CS 34.7 69 0.0024 18.7 6.5 52 15-75 35-91 (112)
27 2plx_B Peptide inhibitor; heli 34.2 28 0.00094 14.4 1.6 12 18-29 13-24 (26)
28 1wiv_A UBP14, ubiquitin-specif 33.9 46 0.0016 17.7 3.0 39 18-64 29-67 (73)
29 1lsh_A Lipovitellin (LV-1N, LV 33.2 1.9E+02 0.0065 23.2 8.0 58 5-63 340-402 (1056)
30 2dag_A Ubiquitin carboxyl-term 32.8 33 0.0011 18.3 2.3 42 18-66 9-50 (74)
31 3vej_A Ubiquitin-like protein 32.0 46 0.0016 15.8 3.7 32 35-66 6-38 (41)
32 2dii_A TFIIH basal transcripti 31.4 59 0.002 16.9 3.4 37 5-46 17-53 (61)
33 1g1e_B SIN3A; four-helix bundl 30.7 72 0.0025 17.6 4.6 13 93-105 62-74 (89)
34 2zvk_U DNA polymerase ETA, pro 29.5 19 0.00065 15.2 0.7 9 98-106 11-19 (26)
35 1veg_A NEDD8 ultimate buster-1 29.4 67 0.0023 17.7 3.2 41 18-66 29-69 (83)
36 2czy_A Paired amphipathic heli 28.5 73 0.0025 17.0 4.8 15 90-104 40-54 (77)
37 2yy9_A Zinc finger and BTB dom 26.5 78 0.0027 18.3 3.4 48 18-65 69-119 (135)
38 2vy8_A Polymerase basic protei 26.4 33 0.0011 20.7 1.7 18 56-73 12-29 (157)
39 1vek_A UBP14, ubiquitin-specif 25.5 75 0.0026 17.3 3.0 41 18-65 29-69 (84)
40 2crn_A Ubash3A protein; compac 25.4 13 0.00045 19.4 -0.2 41 18-65 9-49 (64)
41 1bh9_B TAFII28; histone fold, 25.3 94 0.0032 17.2 4.9 47 2-50 1-48 (89)
42 1r29_A B-cell lymphoma 6 prote 24.4 1E+02 0.0035 17.3 5.1 27 18-44 77-104 (127)
43 1q87_A 39 kDa initiator bindin 24.3 52 0.0018 21.5 2.4 45 50-95 28-72 (221)
44 2kn6_A Apoptosis-associated sp 24.0 73 0.0025 20.7 3.1 39 59-101 133-171 (215)
45 2p1h_A APAF-1, apoptotic prote 24.0 95 0.0032 16.8 4.2 37 59-100 9-46 (94)
46 2vkp_A BTB/POZ domain-containi 23.8 96 0.0033 16.8 6.0 28 18-45 59-87 (109)
47 1v32_A AT5G08430, hypothetical 23.6 52 0.0018 18.8 2.1 14 51-64 38-51 (101)
48 1te4_A Conserved protein MTH18 23.5 82 0.0028 17.7 3.1 24 5-28 57-81 (131)
49 3l6g_A Betaine ABC transporter 23.3 1.6E+02 0.0054 19.1 5.1 50 18-72 204-253 (256)
50 3kor_A Possible Trp repressor; 23.1 55 0.0019 19.4 2.2 29 5-33 28-57 (119)
51 1i54_A Cytochrome C; zinc-porp 23.0 68 0.0023 17.2 2.6 19 89-107 84-102 (103)
52 2khr_A Protein MBTH; sideropho 22.6 48 0.0017 17.9 1.7 21 49-69 43-63 (74)
53 1i8o_A Cytochrome C2; electron 22.3 69 0.0024 17.9 2.5 18 90-107 97-114 (114)
54 1ayg_A Cytochrome C-552; elect 22.2 70 0.0024 16.3 2.4 16 91-106 64-79 (80)
55 1cch_A Cytochrome C551; electr 22.1 70 0.0024 16.2 2.4 16 91-106 66-81 (82)
56 2exv_A Cytochrome C-551; alpha 22.0 68 0.0023 16.3 2.3 16 92-107 67-82 (82)
57 3qml_C Protein SLS1, nucleotid 21.8 36 0.0012 23.6 1.4 24 35-58 86-109 (315)
58 1w2l_A Cytochrome oxidase subu 21.6 68 0.0023 16.9 2.3 17 91-107 83-99 (99)
59 2fcg_F Cationic, antibacterial 21.6 55 0.0019 13.9 1.4 10 97-106 10-19 (26)
60 3b84_A Zinc finger and BTB dom 21.3 1.2E+02 0.004 16.9 4.0 24 18-41 68-92 (119)
61 3dtp_E RLC, myosin regulatory 21.3 1.4E+02 0.0049 17.9 5.3 44 3-48 75-119 (196)
62 2cpw_A CBL-interacting protein 21.2 32 0.0011 17.8 0.8 40 18-64 19-58 (64)
63 1c53_A Cytochrome C553; electr 21.0 66 0.0023 16.4 2.1 24 82-106 56-79 (79)
64 1v31_A Hypothetical protein RA 20.9 56 0.0019 18.2 1.9 16 49-64 28-43 (93)
65 3r2v_A PB2 C-terminal subunit; 20.9 48 0.0016 20.9 1.7 18 57-74 12-29 (216)
66 2jd3_A STBB protein; plasmid s 20.6 1.1E+02 0.0039 18.3 3.2 49 7-57 41-92 (130)
67 3cqx_C BAG family molecular ch 20.5 60 0.0021 18.1 1.9 17 14-30 59-77 (88)
68 1uhr_A SWI/SNF related, matrix 20.2 60 0.002 18.1 1.9 14 51-64 30-43 (93)
No 1
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=167.09 Aligned_cols=104 Identities=19% Similarity=0.311 Sum_probs=98.5
Q ss_pred cHHHHHHHHHhhccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhCCCchhHHH
Q psy1464 3 YACRSRRFLIGLICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81 (107)
Q Consensus 3 ~~~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~ 81 (107)
+++||..++.||||+ ||++++++|+++++++.||+||+..++.+|++||.|++++|+|+++||+.|.++++.+.+.+++
T Consensus 266 ~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~ 345 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAH 345 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHH
Confidence 578999999999999 9999999999999887579999999999999999999999999999999999999876778999
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHhc
Q psy1464 82 IVKFCTKRISNELELTQAESQAISL 106 (107)
Q Consensus 82 ~i~~~~~~~~t~~~~~~~~~f~~~~ 106 (107)
+|..++++|+|+++++++++||++.
T Consensus 346 ~i~~~~~~~~t~~~l~e~~~Ff~~~ 370 (419)
T 3rjo_A 346 MVMGTTNQFSTRTRLEEVKGFFSSL 370 (419)
T ss_dssp HHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999864
No 2
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=99.91 E-value=5.9e-24 Score=165.68 Aligned_cols=104 Identities=18% Similarity=0.347 Sum_probs=98.6
Q ss_pred cHHHHHHHHHhhccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhCCCchhHHH
Q psy1464 3 YACRSRRFLIGLICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81 (107)
Q Consensus 3 ~~~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~ 81 (107)
+++||..++.||||+ ||++++++|+++++++.||+||+..++.+|++||.|++++|+|+++||+.|.++|+.+.+.+++
T Consensus 817 ~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~~i~~qd~~~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~~~~~~~~~~~ 896 (967)
T 3se6_A 817 SSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRM 896 (967)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHhCcCcCcHhHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 578999999999999 9999999999999886699999999999999999999999999999999999999876678999
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHhc
Q psy1464 82 IVKFCTKRISNELELTQAESQAISL 106 (107)
Q Consensus 82 ~i~~~~~~~~t~~~~~~~~~f~~~~ 106 (107)
+|..++++++|+++++++++||++.
T Consensus 897 ~i~~~~~~~~t~~~l~~~~~f~~~~ 921 (967)
T 3se6_A 897 IISGTTAHFSSKDKLQEVKLFFESL 921 (967)
T ss_dssp HHHTTTTTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHhccCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999864
No 3
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=99.90 E-value=5.1e-23 Score=159.58 Aligned_cols=103 Identities=18% Similarity=0.301 Sum_probs=97.6
Q ss_pred cHHHHHHHHHhhccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhCCCchhHHH
Q psy1464 3 YACRSRRFLIGLICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81 (107)
Q Consensus 3 ~~~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~ 81 (107)
+++||..++.||||+ ||++++++|+++++++.||+||...++.++++||.|++++|+|+++||+.|.++++++.+.+.+
T Consensus 749 ~~~ek~~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~~~~~~~~~~ 828 (897)
T 2xdt_A 749 SSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAH 828 (897)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 578999999999999 9999999999999866699999999999999999999999999999999999999866678999
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHh
Q psy1464 82 IVKFCTKRISNELELTQAESQAIS 105 (107)
Q Consensus 82 ~i~~~~~~~~t~~~~~~~~~f~~~ 105 (107)
+|..++++++|+++++++++||+.
T Consensus 829 ~i~~~~~~~~t~~~~~~~~~f~~~ 852 (897)
T 2xdt_A 829 MVMGTTNQFSTRTRLEEVKGFFSS 852 (897)
T ss_dssp HHHHTTTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHh
Confidence 999999999999999999999986
No 4
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=99.89 E-value=2.1e-23 Score=161.87 Aligned_cols=104 Identities=30% Similarity=0.544 Sum_probs=98.5
Q ss_pred cHHHHHHHHHhhccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhCCCchhHHH
Q psy1464 3 YACRSRRFLIGLICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81 (107)
Q Consensus 3 ~~~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~ 81 (107)
+++||..++.||||+ ||++++++|+++++++.||+||+..++.+|++||.|++++|+|+++||+.|.++++++.+.+.+
T Consensus 757 ~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~ 836 (909)
T 4fke_A 757 LVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSN 836 (909)
T ss_dssp SHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHH
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 468999999999999 9999999999999987799999999999999999999999999999999999999887778999
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHhc
Q psy1464 82 IVKFCTKRISNELELTQAESQAISL 106 (107)
Q Consensus 82 ~i~~~~~~~~t~~~~~~~~~f~~~~ 106 (107)
+|..++++++|+++++++++||+..
T Consensus 837 ~i~~~~~~~~t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 837 LIQGVTRRFSSEFELQQLEQFKKNN 861 (909)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999753
No 5
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=99.79 E-value=1.7e-19 Score=138.35 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=92.9
Q ss_pred cHHHHHHHHHhhccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhCCCchhHHH
Q psy1464 3 YACRSRRFLIGLICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTS 81 (107)
Q Consensus 3 ~~~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~ 81 (107)
+++||..++.||||+ ||++++++|++++++ .+++||...++.++++||.|++++|+|+++||+.|.+++++ .+.+.+
T Consensus 648 ~~~~~~~~l~al~~~~~~~~~~~~l~~~~~~-~i~~qd~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~-~~~~~~ 725 (780)
T 1z5h_A 648 RDEDRVRIISAFGKLKSNTDLSTVYGMVEKT-EIKKQDMISFFSSALETLPGREFIFANLDRIIRLVIRYFTG-NRTASR 725 (780)
T ss_dssp SHHHHHHHHHHHTTCCCHHHHHHHHHHHHTT-SSCHHHHHHHHHHHTTSHHHHHHHHHTHHHHHHHHHHHHCS-SSHHHH
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHhCC-chhHHH
Confidence 468999999999999 999999999999984 59999999999999999999999999999999999999974 568999
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHhc
Q psy1464 82 IVKFCTKRISNELELTQAESQAISL 106 (107)
Q Consensus 82 ~i~~~~~~~~t~~~~~~~~~f~~~~ 106 (107)
+|..+ ++++|++ ++++++||+..
T Consensus 726 ~i~~~-~~~~t~~-~~~~~~f~~~~ 748 (780)
T 1z5h_A 726 TVEMM-IPVIGLD-HPDAEDIVRNI 748 (780)
T ss_dssp HHHHH-HHHHHHH-CTTHHHHHHTT
T ss_pred HHHhh-hccCCHH-HHHHHHHHccC
Confidence 99999 9999999 99999999753
No 6
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=91.14 E-value=0.59 Score=36.67 Aligned_cols=76 Identities=11% Similarity=0.002 Sum_probs=52.6
Q ss_pred HHHHHHHHhhccC-cHHHHHHHHHHhhcC--CCCCcCcHHHHHHHhcCChhhHH----HHHHHHHHHHHHHHHHhCCCch
Q psy1464 5 CRSRRFLIGLICY-FLSLIFRYLEYALTE--SLIRKQDAPRVFSLVSQSAVGHT----VALDFLYNNWDRIKKHFNGTQF 77 (107)
Q Consensus 5 ~ek~~ll~AL~cs-d~~ll~~~L~~~l~~--~~ir~qd~~~~~~~v~~n~~g~~----~~w~fl~~n~~~i~~~~~~~~~ 77 (107)
.+|...+. ||+ +|.++++++.+..++ +...|+++..++.+++.||.+.. .-+.|+.+-.-.+.+. ++.
T Consensus 744 ~~k~~~~~--a~~~~~~~~~~v~~l~~~~~f~~~npn~~r~l~~~~~~n~~~fh~~~g~gy~~~~~~~~~l~~~---np~ 818 (867)
T 2gtq_A 744 MDKYFALV--GSSRRSDTLQQVRTALQHPKFSLENPNKARSLIGSFSRNVPHFHAEDGSGYRFIADKVIEIDRF---NPQ 818 (867)
T ss_dssp HHHHHHHH--HHCCSTTHHHHHHHHTTSTTCCTTCHHHHHHHHHHHHTCHHHHTCTTSHHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHH--hcCCChHHHHHHHHHhhCcCCCcCCchHHHHHHHHHhhCccccCCCCCcHHHHHHHHHHHhcCc---CHH
Confidence 45556666 788 999999999999998 44677788889999977886653 4567776655444432 233
Q ss_pred hHHHHHHH
Q psy1464 78 QVTSIVKF 85 (107)
Q Consensus 78 ~l~~~i~~ 85 (107)
.-.+++..
T Consensus 819 ~a~r~~~~ 826 (867)
T 2gtq_A 819 VAARLVQA 826 (867)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHH
Confidence 45555543
No 7
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=86.97 E-value=2.4 Score=26.18 Aligned_cols=54 Identities=15% Similarity=0.064 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhcccCCHHHHHHHHHHHHh
Q psy1464 51 AVGHTVALDFLYNNWDRIKKHFNGTQFQVTSIVKFCTKRISNELELTQAESQAIS 105 (107)
Q Consensus 51 ~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~ 105 (107)
|......|+=+.+.+..+..+.-+.......++..-+.+| |+++++++-+|.++
T Consensus 41 p~~~~~~~~~~~~k~~~~~~k~~s~~~l~~~~~~iY~~~f-T~~El~~l~~FY~s 94 (147)
T 3oao_A 41 PESKKAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNF-TESELKDLNAFYQS 94 (147)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHCC
Confidence 4444445555566665554432111122334444444555 79999999999875
No 8
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=82.43 E-value=2.2 Score=24.93 Aligned_cols=48 Identities=8% Similarity=0.143 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhcccCCHHHHHHHHH
Q psy1464 50 SAVGHTVALDFLYNNWDRIKKHFNGTQFQVTSIVKFCTKRISNELELTQAES 101 (107)
Q Consensus 50 n~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~ 101 (107)
+|.....-..|+++|...+.++.. .+..++..+.+.+-|+++++.+++
T Consensus 11 ~~~~~~~~~~fv~~hR~~Li~rv~----~V~~ILD~Ll~~VLteee~e~I~a 58 (107)
T 3kat_A 11 SPLDAPQLLHFVDQYREQLIARVT----SVEVVLDKLHGQVLSQEQYERVLA 58 (107)
T ss_dssp --------CHHHHHTHHHHHTTCC----CHHHHHHHHTTTTSCHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHHHHHHh----hHHHHHHHHHHhhCCHHHHHHHHh
Confidence 344444445799999999998875 366666666666778999988875
No 9
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.29 E-value=9.3 Score=20.07 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=21.6
Q ss_pred HhhccCcHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHH
Q psy1464 12 IGLICYFLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNN 64 (107)
Q Consensus 12 ~AL~csd~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n 64 (107)
.||+-+.++.+..+..+-++.+ -....+..-. ...+-+.||+-.|
T Consensus 13 ~~ls~se~e~V~~LvsMGFs~~-----qA~kALKat~---~NvErAaDWLFSH 57 (63)
T 1wgn_A 13 QMLSPSERQCVETVVNMGYSYE-----CVLRAMKKKG---ENIEQILDYLFAH 57 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHCCHH-----HHHHHHHHHC---SCHHHHHHHHHHH
T ss_pred HhhCcchHHHHHHHHHcCCCHH-----HHHHHHHHcC---CCHHHHHHHHHhC
Confidence 4554445555666665544432 2223333322 2344566776555
No 10
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=51.38 E-value=32 Score=19.63 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhcccCCHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQVTSIVKFCTKRISNELELT 97 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~ 97 (107)
-.++++.|+...- +. ..++++.....-+-.-..|. -+-+| -..+.+.||.. ...++..+ ..|-.+.++.
T Consensus 14 a~e~lqdYM~~L~-~~-L~~~ElqqFA~Llr~YR~G~-~I~~F----c~kLl~LyG~~---Rk~LL~gm-RpFIp~~Di~ 82 (98)
T 4fqn_A 14 ATELLQDYMLTLR-TK-LSSQEIQQFAALLHEYRNGA-SIHEF----CINLRQLYGDS---RKFLLLGL-RPFIPEKDSQ 82 (98)
T ss_dssp HHHHHHHHHHHHT-TT-SCHHHHHHHHHHHHHHHTTC-CHHHH----HHHHHHHHCGG---GGGGGGGG-GGGSCHHHHH
T ss_pred HHHHHHHHHHHHH-hh-cChHHHHHHHHHHHHHHcCC-CHHHH----HHHHHHHhchH---HHHHHhhc-cCCCChhhHH
Confidence 3456777876543 33 67777655443332111232 12233 34577778753 44444443 6677889999
Q ss_pred HHHHHHHhc
Q psy1464 98 QAESQAISL 106 (107)
Q Consensus 98 ~~~~f~~~~ 106 (107)
.++.|++++
T Consensus 83 ~FesFle~i 91 (98)
T 4fqn_A 83 HFENFLETI 91 (98)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999875
No 11
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=50.52 E-value=35 Score=19.84 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=35.5
Q ss_pred ccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHH----HHHHHHHhCCC
Q psy1464 15 ICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNN----WDRIKKHFNGT 75 (107)
Q Consensus 15 ~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n----~~~i~~~~~~~ 75 (107)
.|+ +..-+++.|..++..+--+=.+. +..+...+.+|+++| |+.|.++|.+.
T Consensus 37 pCtpegk~lK~~lpeAl~t~C~KCTek---------QK~~~~kvi~~l~~n~P~~W~~L~~KyDP~ 93 (109)
T 2gvs_A 37 NCTADGKELKSVIPDALSNECAKCNEK---------QKEGTKKVLKHLINHKPDVWAQLKAKYDPD 93 (109)
T ss_dssp TCCTTHHHHHHHTTHHHHSTTTTSCHH---------HHHHHHHHHHHHHHHCHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHhHHHHhccCCCCCHH---------HHHHHHHHHHHHHHcChHHHHHHHHHHCCC
Confidence 477 88888888887776543222222 235666777888877 88999999764
No 12
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=48.74 E-value=17 Score=17.79 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=18.0
Q ss_pred CccHHHHHHHHHhhccC-cHHHHH
Q psy1464 1 MFYACRSRRFLIGLICY-FLSLIF 23 (107)
Q Consensus 1 ~~~~~ek~~ll~AL~cs-d~~ll~ 23 (107)
.|+.+|+..+|.-|-.+ +|+-++
T Consensus 3 iF~deekSk~L~~Ll~s~~P~Dlq 26 (45)
T 1j2j_B 3 IFEDEEKSKMLARLLKSSHPEDLR 26 (45)
T ss_dssp CCCCHHHHHHHHHHHTCSCHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCChhhHH
Confidence 36778899999999888 887444
No 13
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.07 E-value=28 Score=17.86 Aligned_cols=42 Identities=10% Similarity=0.221 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDR 67 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~~ 67 (107)
++..++++.++-+ ........+....+ ..+.|.+|+.+|-+.
T Consensus 9 ~~~~v~~L~~MGF-----~~~~a~~AL~~t~~---nve~A~e~L~~~~~d 50 (63)
T 2dak_A 9 PEDCVTTIVSMGF-----SRDQALKALRATNN---SLERAVDWIFSHIDD 50 (63)
T ss_dssp CHHHHHHHHHHTC-----CHHHHHHHHHHTTS---CSHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCC-----CHHHHHHHHHHcCC---CHHHHHHHHHhCCCC
Confidence 7888888888754 33444455555433 366788999887553
No 14
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=42.18 E-value=6.5 Score=25.54 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCchhHHHHHHHhhcccCCHHHHHHHHHHHHh
Q psy1464 64 NWDRIKKHFNGTQFQVTSIVKFCTKRISNELELTQAESQAIS 105 (107)
Q Consensus 64 n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~ 105 (107)
|||.+.+++......+..++ ..+.+|.+.+..++.|...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l---~~H~STReRLp~ld~fY~~ 42 (200)
T 3fzg_A 4 NWDKLLKKYNQGQLSIEDLL---KIHSSTNERVATLNDFYTY 42 (200)
T ss_dssp CHHHHHHHHHTTSCCHHHHH---HHSHHHHTTGGGHHHHHHH
T ss_pred cHHHHHHHHHHhhhhHHHHH---hhCCCHHHHhHhHHHHHHH
Confidence 89999998876555566644 5677788888888888653
No 15
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.76 E-value=27 Score=19.16 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNW 65 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~ 65 (107)
++..+++++++-++ .......+... ..+.+.+.+|+.+|-
T Consensus 29 ~e~~i~~L~~MGF~-----~~~a~~AL~~t---~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 29 DEAALRQLTEMGFP-----ENRATKALQLN---HMSVPQAMEWLIEHA 68 (83)
T ss_dssp CHHHHHHHHHHTCC-----HHHHHHHHHHT---TSCHHHHHHHHHHGG
T ss_pred CHHHHHHHHHcCCC-----HHHHHHHHHHh---CCCHHHHHHHHHHCC
Confidence 67778888876443 23344444443 235677889988774
No 16
>1ioj_A APOC-I; apolipoprotein, amphipathic helix, lipid association, LCAT activation; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=41.13 E-value=30 Score=17.75 Aligned_cols=19 Identities=5% Similarity=0.296 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q psy1464 56 VALDFLYNNWDRIKKHFNG 74 (107)
Q Consensus 56 ~~w~fl~~n~~~i~~~~~~ 74 (107)
-.++|+.+.++.+..+++.
T Consensus 37 KtrnWfsEtfekvK~K~~~ 55 (57)
T 1ioj_A 37 KMREWFSETFQKVKEKLKI 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5789999999999998864
No 17
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.24 E-value=21 Score=18.53 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNN 64 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n 64 (107)
+++.++++.++-+ ........+....+ ..+.|.+|+.+|
T Consensus 9 ~~~~I~~L~~MGF-----~~~~a~~AL~~~~~---nve~A~e~L~~~ 47 (63)
T 1wji_A 9 DEKALKHITEMGF-----SKEASRQALMDNGN---NLEAALNVLLTS 47 (63)
T ss_dssp CHHHHHHHHTTTC-----CHHHHHHHHHHTTS---CHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC-----CHHHHHHHHHHhCC---CHHHHHHHHHHC
Confidence 6666776666543 22334444444332 355677887765
No 18
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=39.39 E-value=40 Score=22.22 Aligned_cols=81 Identities=11% Similarity=0.178 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCCCc-CcHHHHHHHhc-CChhhHHHHHHHHHHHHH----HH--------HHHhCCCchhHHHHHHHh
Q psy1464 21 LIFRYLEYALTESLIRK-QDAPRVFSLVS-QSAVGHTVALDFLYNNWD----RI--------KKHFNGTQFQVTSIVKFC 86 (107)
Q Consensus 21 ll~~~L~~~l~~~~ir~-qd~~~~~~~v~-~n~~g~~~~w~fl~~n~~----~i--------~~~~~~~~~~l~~~i~~~ 86 (107)
++++++.+.-.++.|+- |++...|..++ -+|.-.+-+..-+.+|+. ++ ......++..++.++..+
T Consensus 70 l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi 149 (253)
T 2db0_A 70 MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDF 149 (253)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHH
Confidence 45555655433333554 88888888875 578777777777777652 11 111111345677788887
Q ss_pred hcccCCHHHHHHHHH
Q psy1464 87 TKRISNELELTQAES 101 (107)
Q Consensus 87 ~~~~~t~~~~~~~~~ 101 (107)
.+-.+++.+.+++-+
T Consensus 150 ~smltskd~~Dkl~a 164 (253)
T 2db0_A 150 MSMLSSKNREDKLTA 164 (253)
T ss_dssp HHHTSCSSHHHHHHH
T ss_pred HHHhcCCChHHHHHH
Confidence 777777777666653
No 19
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.13 E-value=24 Score=16.85 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNN 64 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n 64 (107)
++..++++.++-++. ......+... + +.+.+.+|+.+|
T Consensus 9 ~~~~v~~L~~MGF~~-----~~a~~AL~~~--~--n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTR-----EHAMEALLNT--S--TMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHHCCH-----HHHHHHHHHS--C--SHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCH-----HHHHHHHHHc--C--CHHHHHHHHHcC
Confidence 677778777775532 2333344433 2 566788887654
No 20
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=36.91 E-value=65 Score=19.63 Aligned_cols=27 Identities=22% Similarity=-0.065 Sum_probs=21.1
Q ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHhc
Q psy1464 79 VTSIVKFCTKRISNELELTQAESQAISL 106 (107)
Q Consensus 79 l~~~i~~~~~~~~t~~~~~~~~~f~~~~ 106 (107)
....++.++..+ |+++++.|-+|+.++
T Consensus 147 ~~~~M~~~a~~L-sd~eI~alaaY~~S~ 173 (174)
T 3vrd_A 147 MASKLKELLKAE-GEDGLDALFAFYASQ 173 (174)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHC
T ss_pred cchhhHHHHhhC-CHHHHHHHHHHHHHc
Confidence 445677777777 578899999999886
No 21
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=36.88 E-value=11 Score=17.76 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q psy1464 54 HTVALDFLYN 63 (107)
Q Consensus 54 ~~~~w~fl~~ 63 (107)
.+.+.+|+.+
T Consensus 32 ~e~A~~~L~~ 41 (43)
T 2g3q_A 32 LEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 3455566544
No 22
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=36.72 E-value=44 Score=18.76 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=20.0
Q ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHhc
Q psy1464 79 VTSIVKFCTKRISNELELTQAESQAISL 106 (107)
Q Consensus 79 l~~~i~~~~~~~~t~~~~~~~~~f~~~~ 106 (107)
+...+...=-...++++.++++.||+++
T Consensus 58 L~gAi~G~~w~~l~~~~K~~L~~~~~~l 85 (93)
T 3mab_A 58 LEGAVQGIRWHGLDEAKKIELKKFHQSL 85 (93)
T ss_dssp HHHHHHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHCCHHHHHHHHHHHHHh
Confidence 3344444444467899999999999876
No 23
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=35.47 E-value=19 Score=23.10 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=21.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCC
Q psy1464 49 QSAVGHTVALDFLYNNWDRIKKHFNG 74 (107)
Q Consensus 49 ~n~~g~~~~w~fl~~n~~~i~~~~~~ 74 (107)
+++.-.+.+-+|+-+||+.+.+.+.+
T Consensus 166 g~~~L~~~~n~~iN~nw~~i~~e~~p 191 (220)
T 3e8t_A 166 GNKELSDTMLTFLNQNWKQVSEEFGK 191 (220)
T ss_dssp GCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 46677778889999999999887754
No 24
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=34.89 E-value=23 Score=20.40 Aligned_cols=28 Identities=14% Similarity=-0.084 Sum_probs=20.8
Q ss_pred HHHHHHHhhccC-cHHHHHHHHHHhhcCC
Q psy1464 6 RSRRFLIGLICY-FLSLIFRYLEYALTES 33 (107)
Q Consensus 6 ek~~ll~AL~cs-d~~ll~~~L~~~l~~~ 33 (107)
+-..-+.-+|+. +.+++.+++++++.-+
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 334456778888 7799999999987544
No 25
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.77 E-value=26 Score=19.37 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWD 66 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~ 66 (107)
|+..++++.++-+ ..+.....+. .+....+.|.+||.+|-+
T Consensus 21 n~~~I~qL~~MGF-----~~~~a~~AL~---~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 21 MSRLIKQLTDMGF-----PREPAEEALK---SNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHHHTC-----CHHHHHHHHH---HTTSCHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHcCC-----CHHHHHHHHH---HcCCCHHHHHHHHHHCcC
Confidence 4555666666533 2233333342 222356678888877643
No 26
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=34.66 E-value=69 Score=18.66 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=37.5
Q ss_pred ccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHH----HHHHHHHhCCC
Q psy1464 15 ICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNN----WDRIKKHFNGT 75 (107)
Q Consensus 15 ~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n----~~~i~~~~~~~ 75 (107)
.|+ +...+++.|..++..+--+=.+. +..+...+.+|+++| |+.+.++|.+.
T Consensus 35 pCtpegk~lK~~lpeAl~t~C~KCTek---------QK~~~~kvi~~l~~n~P~~W~~L~~KyDP~ 91 (112)
T 1k19_A 35 KCSPEGKELKEHLQDAIENGCKKCTEN---------QEKGAYRVIEHLIKNEIEIWRELTAKYDPT 91 (112)
T ss_dssp SSHHHHHHHHHHHHHHTTTTCTTSCSH---------HHHHHHHHHHHHHHHHSCHHHHHHHSSTTT
T ss_pred CCCHHHHHHHHHhHHHHhccCCCCCHH---------HHHHHHHHHHHHHHcChHHHHHHHHHHCCC
Confidence 488 88889999998887653333333 234666778888877 89999999764
No 27
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=34.15 E-value=28 Score=14.39 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHh
Q psy1464 18 FLSLIFRYLEYA 29 (107)
Q Consensus 18 d~~ll~~~L~~~ 29 (107)
.|++++|.|+-+
T Consensus 13 spellrrcldnc 24 (26)
T 2plx_B 13 SPELLRRCLDNC 24 (26)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHhcc
Confidence 899999988753
No 28
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.87 E-value=46 Score=17.69 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNN 64 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n 64 (107)
++..++++.++-++ .......+..-.+ ..+.+.+|+.+|
T Consensus 29 ~~~~v~~L~~MGF~-----~~~a~~AL~~t~~---nve~Ave~L~~~ 67 (73)
T 1wiv_A 29 DQSSVDTLLSFGFA-----EDVARKALKASGG---DIEKATDWVFNN 67 (73)
T ss_dssp CHHHHHHHHHHTCC-----HHHHHHHHHHTTS---CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCC-----HHHHHHHHHHhCC---CHHHHHHHHHhC
Confidence 77788887777543 2333444444332 456777887765
No 29
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=33.22 E-value=1.9e+02 Score=23.24 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=42.1
Q ss_pred HHHHHHHHhhccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhc----CChhhHHHHHHHHHH
Q psy1464 5 CRSRRFLIGLICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVS----QSAVGHTVALDFLYN 63 (107)
Q Consensus 5 ~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~----~n~~g~~~~w~fl~~ 63 (107)
..|..++.||+.+ .+.-++-+++++.+++ +...+...++.... -++...+.++++++.
T Consensus 340 ~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~~~ea~~~l~~~~~~~~Pt~e~l~~~~~l~~~ 402 (1056)
T 1lsh_A 340 DYRRWILDAVPAMATSEALLFLKRTLASEQ-LTSAEATQIVASTLSNQQATRESLSYARELLNT 402 (1056)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC
Confidence 3466799999999 9999999999988765 88877655554422 355677777777653
No 30
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.76 E-value=33 Score=18.31 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWD 66 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~ 66 (107)
++..+++++++-++ .......+....+ .+.+.+.+|+.+|-+
T Consensus 9 ~e~~v~~L~~MGF~-----~~~a~~AL~~t~n--~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 9 DESVIIQLVEMGFP-----MDACRKAVYYTGN--SGAEAAMNWVMSHMD 50 (74)
T ss_dssp CHHHHHHHHHHSCC-----HHHHHHHHHHHTS--CCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCC-----HHHHHHHHHHhCC--CCHHHHHHHHHhCCC
Confidence 78888888887543 3334444444332 246788999988754
No 31
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=31.97 E-value=46 Score=15.83 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=22.8
Q ss_pred CCcCcHHHHHHHhcCChhhHH-HHHHHHHHHHH
Q psy1464 35 IRKQDAPRVFSLVSQSAVGHT-VALDFLYNNWD 66 (107)
Q Consensus 35 ir~qd~~~~~~~v~~n~~g~~-~~w~fl~~n~~ 66 (107)
|+=.|+..++..--.++.... .+++-++..|+
T Consensus 6 VPWd~Ie~lL~~~~~d~~~a~~~~L~RLqkGWe 38 (41)
T 3vej_A 6 VPWDDIEALLKNNFENDQAAVRQVMERLQKGWS 38 (41)
T ss_dssp SCHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcChHHHHHHHHHHHHhccc
Confidence 555667777777655665554 88888998886
No 32
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=31.41 E-value=59 Score=16.87 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=25.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhhcCCCCCcCcHHHHHHH
Q psy1464 5 CRSRRFLIGLICYFLSLIFRYLEYALTESLIRKQDAPRVFSL 46 (107)
Q Consensus 5 ~ek~~ll~AL~csd~~ll~~~L~~~l~~~~ir~qd~~~~~~~ 46 (107)
++|.++|.. ||.+.+.|-+++.++ .|..+|.-.....
T Consensus 17 e~k~rlL~e----N~~L~qLyk~LV~s~-vIse~eFW~~r~~ 53 (61)
T 2dii_A 17 EEKNRMLQE----DPVLFQLYKDLVVSQ-VISAEEFWANRLN 53 (61)
T ss_dssp HHHHHHHHH----CHHHHHHHHHHHTTT-SSCHHHHHHHHCS
T ss_pred HHHHHHHHh----CHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 456666655 888888888887754 3777776554444
No 33
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=30.66 E-value=72 Score=17.61 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHh
Q psy1464 93 ELELTQAESQAIS 105 (107)
Q Consensus 93 ~~~~~~~~~f~~~ 105 (107)
.+-++++...|..
T Consensus 62 ~~V~~~V~~LF~~ 74 (89)
T 1g1e_B 62 QEVYAQVARLFKN 74 (89)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcc
Confidence 4556666666643
No 34
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=29.47 E-value=19 Score=15.22 Aligned_cols=9 Identities=33% Similarity=0.076 Sum_probs=6.4
Q ss_pred HHHHHHHhc
Q psy1464 98 QAESQAISL 106 (107)
Q Consensus 98 ~~~~f~~~~ 106 (107)
.++.||++|
T Consensus 11 TLesFFK~L 19 (26)
T 2zvk_U 11 TLESFFKPL 19 (26)
T ss_pred cHHHHhccC
Confidence 577788765
No 35
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.43 E-value=67 Score=17.68 Aligned_cols=41 Identities=10% Similarity=-0.009 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWD 66 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~ 66 (107)
+++.|++++++-++ ...+...+..-.++ .+.|.+|+..|-+
T Consensus 29 ~ee~I~~Lv~MGF~-----~~~A~~AL~~t~gd---ve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYMGFD-----TVVAEAALRVFGGN---VQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHSCC-----HHHHHHHHHHTTTC---HHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCC-----HHHHHHHHHHcCCC---HHHHHHHHHhCCC
Confidence 56777777776443 23344444443332 5677888877754
No 36
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=28.49 E-value=73 Score=17.00 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHHH
Q psy1464 90 ISNELELTQAESQAI 104 (107)
Q Consensus 90 ~~t~~~~~~~~~f~~ 104 (107)
..+++-++++...|.
T Consensus 40 ~~~~~v~~rv~~Lf~ 54 (77)
T 2czy_A 40 IDTPGVIRRVSQLFH 54 (77)
T ss_dssp SCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHc
Confidence 334444455544443
No 37
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=26.54 E-value=78 Score=18.28 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHhhcCCC-CCcCcHHHHHHHh--cCChhhHHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESL-IRKQDAPRVFSLV--SQSAVGHTVALDFLYNNW 65 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~-ir~qd~~~~~~~v--~~n~~g~~~~w~fl~~n~ 65 (107)
+++.++.+|+++.+++. +...++..++... -.=+.-.+...+|+.+|.
T Consensus 69 ~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 69 FAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTS 119 (135)
T ss_dssp GHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC---
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 67888889999988764 5556665555543 123334444445554444
No 38
>2vy8_A Polymerase basic protein 2; viral protein, transcription, mRNA capping, mitochondrion, mRNA processing; 1.2A {Influenza a virus} PDB: 2vy7_A*
Probab=26.42 E-value=33 Score=20.68 Aligned_cols=18 Identities=17% Similarity=0.661 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhC
Q psy1464 56 VALDFLYNNWDRIKKHFN 73 (107)
Q Consensus 56 ~~w~fl~~n~~~i~~~~~ 73 (107)
-.+.|+..||..+...+.
T Consensus 12 ntyqwi~~n~~t~k~q~~ 29 (157)
T 2vy8_A 12 NTYQWIIRNWETVKIQWS 29 (157)
T ss_dssp HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHh
Confidence 356788888888876553
No 39
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.52 E-value=75 Score=17.35 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNW 65 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~ 65 (107)
++..+++++++-+.. ......+....+ .+.+.|.+|+.+|-
T Consensus 29 ~e~~v~~L~~MGF~~-----~~a~~AL~~t~n--~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQ-----LHCQKAAINTSN--AGVEEAMNWLLSHM 69 (84)
T ss_dssp CHHHHHHHHHHTCCH-----HHHHHHHHHTTT--CCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCH-----HHHHHHHHHHcC--CCHHHHHHHHHhCC
Confidence 788888888875532 223333333221 35678889988774
No 40
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.41 E-value=13 Score=19.38 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNW 65 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~ 65 (107)
++..+++++++-+. .......+..-. | .+.+.+.+|+.+|-
T Consensus 9 ~e~~v~~L~~MGF~-----~~~a~~AL~~t~-n-~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 9 SPSLLEPLLAMGFP-----VHTALKALAATG-R-KTAEEALAWLHDHC 49 (64)
T ss_dssp SCSSHHHHHHTSCC-----HHHHHHHHHHHT-S-CCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCC-----HHHHHHHHHHhC-C-CCHHHHHHHHHhCC
Confidence 66667777765432 223333333322 2 36778889988774
No 41
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=25.31 E-value=94 Score=17.22 Aligned_cols=47 Identities=17% Similarity=0.079 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHhhccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCC
Q psy1464 2 FYACRSRRFLIGLICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQS 50 (107)
Q Consensus 2 ~~~~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n 50 (107)
|+.++-.++-.-=-++ +...++|+...+++.. + ++++..++.+++.-
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKrl~~~~~~~~-v-~~~v~i~v~glaKv 48 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-V-SQNVVIAMSGISKV 48 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHSSC-C-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCC-C-CccHHHHHHHHHHH
Confidence 3455555555444567 8889999999888653 4 46777777776543
No 42
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=24.43 E-value=1e+02 Score=17.33 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHhhcCCC-CCcCcHHHHH
Q psy1464 18 FLSLIFRYLEYALTESL-IRKQDAPRVF 44 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~-ir~qd~~~~~ 44 (107)
+|..++.+|+++.++.. +...++..++
T Consensus 77 ~~~~f~~ll~~~Ytg~~~~~~~~~~~ll 104 (127)
T 1r29_A 77 NPEGFNILLDFMYTSRLNLREGNIMAVM 104 (127)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred CHHHHHHHHHHHcCCCcCcCHHHHHHHH
Confidence 66777777777776653 4444444433
No 43
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1 PDB: 1q88_A 1q89_A
Probab=24.27 E-value=52 Score=21.51 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=34.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhhcccCCHHH
Q psy1464 50 SAVGHTVALDFLYNNWDRIKKHFNGTQFQVTSIVKFCTKRISNELE 95 (107)
Q Consensus 50 n~~g~~~~w~fl~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~ 95 (107)
.|......-+.+.+-|++|...-++ .+++..+|...+.+|+-++|
T Consensus 28 ~~~~~~~Fk~~vi~iW~eiv~~~~i-~~~~~~fI~~aa~~F~~~~Q 72 (221)
T 1q87_A 28 TPNEQETFRAKVDEIWFRLTQKTDG-TVMRDFLIEKAAEYFKQPEQ 72 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSSS-EEEHHHHHHHHHHHHSCTTS
T ss_pred CHHHHHHHHHHHHHHHHHHhccccc-cccHHHHHHHHHHHHhccch
Confidence 4556666677888889999887766 57888888888888876544
No 44
>2kn6_A Apoptosis-associated speck-like protein containin; multidomain modular protein structure, interdomain mobility, domain, inflammation; NMR {Homo sapiens}
Probab=23.97 E-value=73 Score=20.68 Aligned_cols=39 Identities=5% Similarity=0.126 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHhhcccCCHHHHHHHHH
Q psy1464 59 DFLYNNWDRIKKHFNGTQFQVTSIVKFCTKRISNELELTQAES 101 (107)
Q Consensus 59 ~fl~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~ 101 (107)
.|++.|...+..++. .+..++..+...+-|+++++++++
T Consensus 133 hfl~~~R~~Lv~~v~----~V~~lLD~Ll~~vit~e~~e~I~a 171 (215)
T 2kn6_A 133 HFIDQHRAALIARVT----NVEWLLDALYGKVLTDEQYQAVRA 171 (215)
T ss_dssp CCTTHHHHHHHHHHC----CHHHHHHHTTTTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc----cHHHHHHHHHHhhCCHHHHHHHHc
Confidence 478888888888873 255556665555678888888764
No 45
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.96 E-value=95 Score=16.77 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHhh-cccCCHHHHHHHH
Q psy1464 59 DFLYNNWDRIKKHFNGTQFQVTSIVKFCT-KRISNELELTQAE 100 (107)
Q Consensus 59 ~fl~~n~~~i~~~~~~~~~~l~~~i~~~~-~~~~t~~~~~~~~ 100 (107)
+.++.|+..+.+.+. ...++..+. ..+-|+++.++++
T Consensus 9 ~~L~~~r~~Lv~~l~-----v~~lld~L~~~~vlt~~~~e~I~ 46 (94)
T 2p1h_A 9 NCLLQHREALEKDIK-----TSYIMDHMISDGFLTISEEEKVR 46 (94)
T ss_dssp HHHHHTHHHHHHHCC-----HHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHhHHHHHHHCC-----HHHHHHHHHHCCCCCHHHHHHHH
Confidence 466777777777652 223333332 2244566666655
No 46
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=23.82 E-value=96 Score=16.79 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHhhcCCC-CCcCcHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESL-IRKQDAPRVFS 45 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~-ir~qd~~~~~~ 45 (107)
+|+.++.+|+++.++.. +...++..++.
T Consensus 59 ~~~~f~~~l~~iYt~~~~~~~~~~~~ll~ 87 (109)
T 2vkp_A 59 EPAAFLILLKYMYSDEIDLEADTVLATLY 87 (109)
T ss_dssp CHHHHHHHHHHHHHCCCCCCTTTHHHHHH
T ss_pred CHHHHHHHHHHHcCCCccCCHHHHHHHHH
Confidence 67777788888877653 44444444433
No 47
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=23.58 E-value=52 Score=18.77 Aligned_cols=14 Identities=0% Similarity=-0.054 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHH
Q psy1464 51 AVGHTVALDFLYNN 64 (107)
Q Consensus 51 ~~g~~~~w~fl~~n 64 (107)
+.-...+|+|+++|
T Consensus 38 ~eVvk~lW~YIK~n 51 (101)
T 1v32_A 38 YDVSDTIAKYISKE 51 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 45566789999876
No 48
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=23.54 E-value=82 Score=17.73 Aligned_cols=24 Identities=0% Similarity=-0.288 Sum_probs=11.9
Q ss_pred HHHHHHHHhhccC-cHHHHHHHHHH
Q psy1464 5 CRSRRFLIGLICY-FLSLIFRYLEY 28 (107)
Q Consensus 5 ~ek~~ll~AL~cs-d~~ll~~~L~~ 28 (107)
.-|...+.+||.. ++..+..++..
T Consensus 57 ~vR~~A~~aL~~~~~~~a~~~L~~~ 81 (131)
T 1te4_A 57 RIRGAAAWIIGNFQDERAVEPLIKL 81 (131)
T ss_dssp HHHHHHHHHHGGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445555555555 55544444443
No 49
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=23.33 E-value=1.6e+02 Score=19.12 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHF 72 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n~~~i~~~~ 72 (107)
.|+ +.++|+.. .+...++..+...+..+....++|-+|+++|=+.+.+-+
T Consensus 204 ~P~-~~~~L~~~----~l~~~~~~~l~~~v~~~~~~~~vA~~wl~~~~~~~~~W~ 253 (256)
T 3l6g_A 204 NPE-AYKVLDKF----NWTTKDMEAVMLDIQNGKTPEEAAKNWIKDHQKEVDKWF 253 (256)
T ss_dssp CHH-HHHHHHHC----CCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTHHHHHGGG
T ss_pred ChH-HHHHHHhc----cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCHHHHHHHh
Confidence 344 44455544 266666666666664444567899999999977765544
No 50
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=23.14 E-value=55 Score=19.37 Aligned_cols=29 Identities=3% Similarity=0.084 Sum_probs=22.9
Q ss_pred HHHHHHHHhhccC-cHHHHHHHHHHhhcCC
Q psy1464 5 CRSRRFLIGLICY-FLSLIFRYLEYALTES 33 (107)
Q Consensus 5 ~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~ 33 (107)
.....+..|+.+. +++.+.++|..+++++
T Consensus 28 ~~~d~L~~AIl~l~~~ee~~~fl~dL~T~~ 57 (119)
T 3kor_A 28 AALDELFDAILTLENREECYQFFDDLCTVN 57 (119)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHSCHH
T ss_pred ccHHHHHHHHHHhCCHHHHHHHHHHhCCch
Confidence 4566788999999 9888888888877543
No 51
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=23.02 E-value=68 Score=17.20 Aligned_cols=19 Identities=16% Similarity=-0.024 Sum_probs=15.8
Q ss_pred ccCCHHHHHHHHHHHHhcC
Q psy1464 89 RISNELELTQAESQAISLS 107 (107)
Q Consensus 89 ~~~t~~~~~~~~~f~~~~~ 107 (107)
.+.+++++..+-+|+.++.
T Consensus 84 ~l~~~~ei~~l~aYl~sl~ 102 (103)
T 1i54_A 84 GIKKKGERQDLVAYLKSAT 102 (103)
T ss_dssp CCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 4667999999999998864
No 52
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=22.57 E-value=48 Score=17.89 Aligned_cols=21 Identities=19% Similarity=0.648 Sum_probs=17.9
Q ss_pred CChhhHHHHHHHHHHHHHHHH
Q psy1464 49 QSAVGHTVALDFLYNNWDRIK 69 (107)
Q Consensus 49 ~n~~g~~~~w~fl~~n~~~i~ 69 (107)
..|..+..-++|+.+||..+.
T Consensus 43 ~~~~sr~~CL~yIe~~WtDmR 63 (74)
T 2khr_A 43 HGEASRAACLDYVEKNWTDLR 63 (74)
T ss_dssp ECSCCHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHhhhcCCC
Confidence 457889999999999998764
No 53
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=22.29 E-value=69 Score=17.88 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHHhcC
Q psy1464 90 ISNELELTQAESQAISLS 107 (107)
Q Consensus 90 ~~t~~~~~~~~~f~~~~~ 107 (107)
++++++++.|-+|+.+|+
T Consensus 97 l~~~~d~~~liaYL~sl~ 114 (114)
T 1i8o_A 97 LANEQQRKDVVAYLATLK 114 (114)
T ss_dssp CCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 677899999999999874
No 54
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=22.17 E-value=70 Score=16.30 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHhc
Q psy1464 91 SNELELTQAESQAISL 106 (107)
Q Consensus 91 ~t~~~~~~~~~f~~~~ 106 (107)
-|+++++.+-+|+.++
T Consensus 64 Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 64 VTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4799999999999876
No 55
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=22.08 E-value=70 Score=16.18 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHhc
Q psy1464 91 SNELELTQAESQAISL 106 (107)
Q Consensus 91 ~t~~~~~~~~~f~~~~ 106 (107)
-|+++++.+-+|+.++
T Consensus 66 ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 66 VTEEEAKILAEWVLSL 81 (82)
T ss_dssp CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4799999999999876
No 56
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=22.04 E-value=68 Score=16.29 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcC
Q psy1464 92 NELELTQAESQAISLS 107 (107)
Q Consensus 92 t~~~~~~~~~f~~~~~ 107 (107)
|+++++.+-+|+.++.
T Consensus 67 s~~ei~~l~~yl~~lk 82 (82)
T 2exv_A 67 SDDEAQTLAKWVLSQK 82 (82)
T ss_dssp CHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7899999999998763
No 57
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=21.84 E-value=36 Score=23.62 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=13.1
Q ss_pred CCcCcHHHHHHHhcCChhhHHHHH
Q psy1464 35 IRKQDAPRVFSLVSQSAVGHTVAL 58 (107)
Q Consensus 35 ir~qd~~~~~~~v~~n~~g~~~~w 58 (107)
++.+-...+..++.+||....-++
T Consensus 86 ~rE~aarII~ssLRNNP~Al~~V~ 109 (315)
T 3qml_C 86 LRELSTRVITSCLRNNPPVVEFIN 109 (315)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHH
Confidence 333434444444678887666444
No 58
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=21.58 E-value=68 Score=16.93 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHhcC
Q psy1464 91 SNELELTQAESQAISLS 107 (107)
Q Consensus 91 ~t~~~~~~~~~f~~~~~ 107 (107)
-+++++..+-+|+.++.
T Consensus 83 ls~~ei~~l~~yl~sl~ 99 (99)
T 1w2l_A 83 LSEREVAALIEFIKQQQ 99 (99)
T ss_dssp CCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 47899999999998874
No 59
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=21.57 E-value=55 Score=13.90 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=5.6
Q ss_pred HHHHHHHHhc
Q psy1464 97 TQAESQAISL 106 (107)
Q Consensus 97 ~~~~~f~~~~ 106 (107)
++++.||..+
T Consensus 10 QkIkdFf~~l 19 (26)
T 2fcg_F 10 QRIKDFLRNL 19 (26)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 4566666543
No 60
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=21.34 E-value=1.2e+02 Score=16.92 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHhhcCCC-CCcCcHH
Q psy1464 18 FLSLIFRYLEYALTESL-IRKQDAP 41 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~-ir~qd~~ 41 (107)
+|+.++.+|+++.++.. +...+..
T Consensus 68 ~~~~f~~ll~~iYtg~~~~~~~~v~ 92 (119)
T 3b84_A 68 FAEIFGLLLDFFYTGHLALTSGNRD 92 (119)
T ss_dssp GHHHHHHHHHHHHHSCCCCCTTTHH
T ss_pred CHHHHHHHHHHHcCCCCccCHHHHH
Confidence 56677777777776653 3333333
No 61
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=21.33 E-value=1.4e+02 Score=17.92 Aligned_cols=44 Identities=11% Similarity=-0.156 Sum_probs=31.4
Q ss_pred cHHHHHHHHHhhccC-cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhc
Q psy1464 3 YACRSRRFLIGLICY-FLSLIFRYLEYALTESLIRKQDAPRVFSLVS 48 (107)
Q Consensus 3 ~~~ek~~ll~AL~cs-d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~ 48 (107)
...|-..++.+||.. ....+..++... ++. |.-.+...++....
T Consensus 75 ~~~el~~~l~~lg~~~~~~~~~~l~~~~-~g~-i~~~eF~~~~~~~~ 119 (196)
T 3dtp_E 75 SKNDIRATFDSLGRLCTEQELDSMVAEA-PGP-INFTMFLTIFGDRI 119 (196)
T ss_dssp CHHHHHHHHHTTSCCCCHHHHHHHHTTS-SSC-CBHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHc-cCC-CcHHHHHHHHHHHh
Confidence 456667788888888 888888777665 443 77777777776643
No 62
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.21 E-value=32 Score=17.80 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHhhcCCCCCcCcHHHHHHHhcCChhhHHHHHHHHHHH
Q psy1464 18 FLSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNN 64 (107)
Q Consensus 18 d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~w~fl~~n 64 (107)
++..+++++++-+ ........+....+ ...+.+.+|+.+|
T Consensus 19 ~e~~i~~L~~MGF-----~~~~a~~AL~~t~~--~nve~A~ewL~~~ 58 (64)
T 2cpw_A 19 HGSALDVLLSMGF-----PRARAQKALASTGG--RSVQTACDWLFSH 58 (64)
T ss_dssp CCCHHHHHHHHTC-----CHHHHHHHHHHTTT--SCHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCC-----CHHHHHHHHHHcCC--CCHHHHHHHHHhC
Confidence 5566777776643 22334444443322 2456677777654
No 63
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=21.01 E-value=66 Score=16.40 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=17.1
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHhc
Q psy1464 82 IVKFCTKRISNELELTQAESQAISL 106 (107)
Q Consensus 82 ~i~~~~~~~~t~~~~~~~~~f~~~~ 106 (107)
.++.+...+ |+++++.+-+|+.+|
T Consensus 56 ~Mp~~~~~L-s~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 56 VMTNLVKRY-SDEEMKAMADYMSKL 79 (79)
T ss_pred chHHHHhhC-CHHHHHHHHHHHHhC
Confidence 344444444 789999999998875
No 64
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=20.94 E-value=56 Score=18.16 Aligned_cols=16 Identities=0% Similarity=-0.085 Sum_probs=12.0
Q ss_pred CChhhHHHHHHHHHHH
Q psy1464 49 QSAVGHTVALDFLYNN 64 (107)
Q Consensus 49 ~n~~g~~~~w~fl~~n 64 (107)
..+.-...+|+|+++|
T Consensus 28 sr~evvk~lW~YIK~n 43 (93)
T 1v31_A 28 TRPRIIAAIWHYVKAR 43 (93)
T ss_dssp CSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 4456677889998876
No 65
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=20.85 E-value=48 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.676 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhCC
Q psy1464 57 ALDFLYNNWDRIKKHFNG 74 (107)
Q Consensus 57 ~w~fl~~n~~~i~~~~~~ 74 (107)
.+.|+..||+.+.-.+..
T Consensus 12 tYqwiirNwe~vKiQws~ 29 (216)
T 3r2v_A 12 TYQWIIRNWEAVKIQWSQ 29 (216)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhhHhhhhhhcc
Confidence 568999999988776544
No 66
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=20.55 E-value=1.1e+02 Score=18.32 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=35.1
Q ss_pred HHHHHHhhccC--cHHHHHHHHHHhhcCCCCCcCcHHHHHHHh-cCChhhHHHH
Q psy1464 7 SRRFLIGLICY--FLSLIFRYLEYALTESLIRKQDAPRVFSLV-SQSAVGHTVA 57 (107)
Q Consensus 7 k~~ll~AL~cs--d~~ll~~~L~~~l~~~~ir~qd~~~~~~~v-~~n~~g~~~~ 57 (107)
|..++.+++-- ||.+- .+|...++++ ...+++..++.++ ...|...++.
T Consensus 41 R~allaGlAL~k~DpRLP-~LLA~~~~~~-~t~~~l~~li~s~~g~~p~~~~i~ 92 (130)
T 2jd3_A 41 RNAFISGMALHQLDPRLP-VLLTAILSEE-FSADQVVTLLSQTTGWKPSQADIR 92 (130)
T ss_dssp HHHHHHHHHHHHHCTHHH-HHHHHHCSTT-CCHHHHHHHHHHHHCCCCCTHHHH
T ss_pred HHHHHHHHHHHhcChhHH-HHHHHHhcCC-CCHHHHHHHHHHHcCCCCchhHHH
Confidence 45566666644 88877 4677777776 8899999999998 4566766655
No 67
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=20.53 E-value=60 Score=18.13 Aligned_cols=17 Identities=35% Similarity=0.229 Sum_probs=12.3
Q ss_pred hccC--cHHHHHHHHHHhh
Q psy1464 14 LICY--FLSLIFRYLEYAL 30 (107)
Q Consensus 14 L~cs--d~~ll~~~L~~~l 30 (107)
|||+ |...++|=|+-.+
T Consensus 59 i~CtlDDQKkIkkRLe~Ll 77 (88)
T 3cqx_C 59 IGCALEDQKKIKRRLETLL 77 (88)
T ss_dssp HTSCHHHHHHHHHHHHHHH
T ss_pred hcccHhhHHHHHHHHHHHH
Confidence 5888 7777877666555
No 68
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=20.20 E-value=60 Score=18.07 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHH
Q psy1464 51 AVGHTVALDFLYNN 64 (107)
Q Consensus 51 ~~g~~~~w~fl~~n 64 (107)
+.-...+|+|+++|
T Consensus 30 ~evvk~lW~YIK~n 43 (93)
T 1uhr_A 30 PVIIQALWQYIKTH 43 (93)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45566788888876
Done!