RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1464
(107 letters)
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 81.4 bits (201), Expect = 9e-20
Identities = 17/82 (20%), Positives = 39/82 (47%)
Query: 20 SLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQV 79
+ L+ + I+ Q+ P++ +L+ ++ VG+ +A FL NW+++ + F +
Sbjct: 284 EKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSI 343
Query: 80 TSIVKFCTKRISNELELTQAES 101
+V T + S L + +
Sbjct: 344 AHMVMGTTNQFSTRTRLEEVKG 365
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 78.3 bits (193), Expect = 1e-18
Identities = 15/82 (18%), Positives = 38/82 (46%)
Query: 20 SLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQV 79
+ + +E + +I+ Q+ + +++ G +A DF+ NW + K F+ + +
Sbjct: 835 EKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDI 894
Query: 80 TSIVKFCTKRISNELELTQAES 101
I+ T S++ +L + +
Sbjct: 895 RMIISGTTAHFSSKDKLQEVKL 916
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 77.1 bits (190), Expect = 4e-18
Identities = 17/82 (20%), Positives = 39/82 (47%)
Query: 20 SLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQV 79
+ L+ + I+ Q+ P++ +L+ ++ VG+ +A FL NW+++ + F +
Sbjct: 767 EKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSI 826
Query: 80 TSIVKFCTKRISNELELTQAES 101
+V T + S L + +
Sbjct: 827 AHMVMGTTNQFSTRTRLEEVKG 848
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 68.5 bits (168), Expect = 4e-15
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 20 SLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQV 79
+ + I+KQD FS ++ G L + ++F G
Sbjct: 666 TDLSTVYGMVEKTE-IKKQDMISFFSSALETLPGREFIFANLDRIIRLVIRYFTGN-RTA 723
Query: 80 TSIVKFCTKRISNELELTQA 99
+ V+ I + +
Sbjct: 724 SRTVEMMIPVIGLDHPDAED 743
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 3e-04
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 22/69 (31%)
Query: 48 SQSAVGHTVALDFLYNN-------WDRIKKHFNGTQ-FQVTSIVKFCTKRISNELELT-- 97
SQ G + +D LY W+R HF T F + IV +N + LT
Sbjct: 1626 SQE-QG--MGMD-LYKTSKAAQDVWNRADNHFKDTYGFSILDIVI------NNPVNLTIH 1675
Query: 98 --QAESQAI 104
+ + I
Sbjct: 1676 FGGEKGKRI 1684
Score = 28.9 bits (64), Expect = 0.33
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 19 LSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWD------RIKKHF 72
L+ ++L Y SL+ + F V + +L N D ++ +
Sbjct: 58 AELVGKFLGY--VSSLVEPSKVGQ-FDQVLNLCLTEFEN-CYLEGN-DIHALAAKLLQEN 112
Query: 73 NGTQFQVTSIVK--FCTKRISNELELTQAES 101
+ T + ++K + ++ ++ S
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A
{Physarum polycephalum} SCOP: d.144.1.3
Length = 342
Score = 29.9 bits (66), Expect = 0.13
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 26 LEYALTESL--IRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDR 67
+E +L + AP V + + +G +ALD + NN DR
Sbjct: 161 MELVRGITLNKLTTTSAPEVLTKSTMQQLGSLMALDVIVNNSDR 204
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase,
[4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM
MD0; 1.50A {Methanosarcina barkeri}
Length = 350
Score = 29.6 bits (67), Expect = 0.14
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 19/95 (20%)
Query: 19 LSLIFRYLEYALTESLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIKKHFNGTQFQ 78
L + + + D + SL S+ L+ LY+ +++ H+ G +
Sbjct: 7 LDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEG------LERLYSAARKVRDHYFGNRVF 60
Query: 79 VTSIV----------KFCTKRISNELE---LTQAE 100
+ + FC NE+ LT E
Sbjct: 61 LNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEE 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.55
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 16/62 (25%)
Query: 19 LSLIFRYLEYALTE---------SLIRKQDAPRVFSLVSQSAVGHTVALDFLYNNWDRIK 69
LSLI+ + + SL+ KQ S+ ++ L+ +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-------PSIYLELKVKLENEYA 444
Query: 70 KH 71
H
Sbjct: 445 LH 446
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.66
Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 88 KRISNELELTQAESQ-AISLS 107
K++ L+L +S A+++
Sbjct: 23 KKLQASLKLYADDSAPALAIK 43
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster,
transferase; HET: SAM DTB; 3.40A {Escherichia coli}
SCOP: c.1.28.1
Length = 369
Score = 26.9 bits (60), Expect = 1.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 58 LDFLYNNWDRIKKHFNGTQFQVTSIV 83
LD L+ ++HF+ Q QV++++
Sbjct: 44 LDLLFEAQQVHRQHFDPRQVQVSTLL 69
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 26.9 bits (60), Expect = 1.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 64 NWDRIKKHFNGTQFQVTSI 82
WD ++F T FQ+++I
Sbjct: 222 VWDEGNEYFPPTSFQISNI 240
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding,
metallopeptidase, structural genomics, PSI-2, protein
struc initiative; 2.00A {Haemophilus influenzae} PDB:
3ic1_A
Length = 377
Score = 26.8 bits (60), Expect = 1.6
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 64 NWDRIKKHFNGTQFQVTSI 82
WD+ + F T Q+ +I
Sbjct: 219 QWDKGNEFFPPTSLQIANI 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.138 0.406
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,497,673
Number of extensions: 71408
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 17
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)