BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14643
(801 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 141/506 (27%), Positives = 239/506 (47%), Gaps = 43/506 (8%)
Query: 306 WPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIPELRN 364
+PRG+ +GGSS ++YM+ RG+ D+DR+AA+ G+ GW++D + F++ M +P N
Sbjct: 78 YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQ-QFVRKNEMVVPPADN 136
Query: 365 --------SPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPE----NYLGF 412
H T G V + + + + D L +++ QS + P+ + LG
Sbjct: 137 HNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQ--EQSEEFFFNPDMGTGHPLGI 194
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYG----VEFV- 467
S A+ NG+R SS AY+ P ++RPNL + +N+QVT+ L++S + VE+
Sbjct: 195 SWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTK-LVNSGTTNGLPAFRCVEYAE 253
Query: 468 -KNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDH 525
+ V A+KE++LSAG++ TP +L SG+G L S+ I + P VG NL DH
Sbjct: 254 QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDH 313
Query: 526 ITMAGLAFTHNTTELFNYNTMLAQAFTMMYNISKXXXXXXXXXXXXXXXFVQTKYNTDPS 585
+ + AF N+ + F+ + F N+ + PS
Sbjct: 314 LLLPA-AFFVNSNQTFDNIFRDSSEF----NVDLDQWTNTRTGPLTALIANHLAWLRLPS 368
Query: 586 YPDIEFIFAIGSLAADSGH--TVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRG 643
I F + +S H T+ +++ ++ A + + ++ L+ P +RG
Sbjct: 369 NSSIFQTFPDPAAGPNSAHWETI-----FSNQWFHPAIPRPDTGSFMSVTNALISPVARG 423
Query: 644 RILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGC 703
I L + NP PL+ Y E D++T+++ +K + + + V P
Sbjct: 424 DIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF------VIRPFD 477
Query: 704 KQYEFESDDYWACT-ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADAS 762
+ +DD + R T+ H GT M VVD +L+V G+ LR+ D S
Sbjct: 478 PRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGS 537
Query: 763 VMPILIAAHPMAPIYMIGEKCADMIK 788
++P AH PIY++G++ AD+IK
Sbjct: 538 ILPFAPNAHTQGPIYLVGKQGADLIK 563
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 7/178 (3%)
Query: 85 ITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWT 144
+++ ++ A + + ++ L+ P +RG I L + NP PL+ Y E D++T
Sbjct: 392 FSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFT 451
Query: 145 LVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACT-ARQITATVHHMSG 203
+++ +K + + + V P + +DD + R T+ H G
Sbjct: 452 MIQAVKSNLRFLSGQAWADF------VIRPFDPRLRDPTDDAAIESYIRDNANTIFHPVG 505
Query: 204 TCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
T M VVD +L+V G+ LR+ D S++P AH PIY++G++ AD+IK
Sbjct: 506 TASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIK 563
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 228/493 (46%), Gaps = 60/493 (12%)
Query: 305 RWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIPELR 363
R R K MGG S N I D D W A G GW+ + +P + ++E
Sbjct: 86 RHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLET-NEDAGP 144
Query: 364 NSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYL-GFSRIQATTR-N 421
++PHH +G V + P K A L++ + +N + G + Q R +
Sbjct: 145 DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRAD 204
Query: 422 GKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN--GKKRIVFARK 479
G R SS +YI P+ + N + + +++ D++ ++ GV+ V + G + AR
Sbjct: 205 GTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAFGHTHRLTARN 263
Query: 480 EIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTT 538
E++LS GAI+TP +LM SG+GP HL I+V D P VGE+LQDH
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH--------PEGVV 315
Query: 539 ELFNYNTMLAQAFTMMYNISKXXXXXXXXXXXXXXXFVQTKYNTDPSYPDIEFIFAIGSL 598
+ M+A++ T + I F T+ D PD+ + GS+
Sbjct: 316 QFEAKQPMVAES-TQWWEIG---------------IFTPTEDGLD--RPDL--MMHYGSV 355
Query: 599 AADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D +T+R G T +N +++ P + +SRG + L SR+ P++
Sbjct: 356 PFDM-NTLRHGYPTT-------------ENGFSLTPNVTHARSRGTVRLRSRDFRDKPMV 401
Query: 659 YGNYFQDES--DLWTLVEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFESDDYWA 715
YF D D+ +V GI+ A ++ G +L+P E ++D+
Sbjct: 402 DPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP-------GVEAQTDEELQ 454
Query: 716 CTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAP 775
R+ TV+H GT RMG ED + +D ELRV G+ LRVADASVMP + +P
Sbjct: 455 DYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNIT 514
Query: 776 IYMIGEKCADMIK 788
+ MIGE+CAD+I+
Sbjct: 515 VMMIGERCADLIR 527
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 100 KNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDES--DLWTLVEGIKMAVNLSR 157
+N +++ P + +SRG + L SR+ P++ YF D D+ +V GI+ A ++
Sbjct: 370 ENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAA 429
Query: 158 TEPFQR-IGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTV 216
G +L+P E ++D+ R+ TV+H GT RMG ED +
Sbjct: 430 QPAMAEWTGRELSP-------GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSP 482
Query: 217 VDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
+D ELRV G+ LRVADASVMP + +P + MIGE+CAD+I+
Sbjct: 483 LDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 228/493 (46%), Gaps = 60/493 (12%)
Query: 305 RWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIPELR 363
R R K MGG S N I D D W A G GW+ + +P + ++E
Sbjct: 86 RHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLET-NEDAGP 144
Query: 364 NSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYL-GFSRIQATTR-N 421
++PHH +G V + P K A L++ + +N + G + Q R +
Sbjct: 145 DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRAD 204
Query: 422 GKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN--GKKRIVFARK 479
G R SS +YI P+ + N + + +++ D++ ++ GV+ V + G + AR
Sbjct: 205 GTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAFGHTHRLTARN 263
Query: 480 EIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTT 538
E++LS GAI+TP +LM SG+GP HL I+V D P VGE+LQDH
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH--------PEGVV 315
Query: 539 ELFNYNTMLAQAFTMMYNISKXXXXXXXXXXXXXXXFVQTKYNTDPSYPDIEFIFAIGSL 598
+ M+A++ T + I F T+ D PD+ + GS+
Sbjct: 316 QFEAKQPMVAES-TQWWEIG---------------IFTPTEDGLD--RPDL--MMHYGSV 355
Query: 599 AADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D +T+R G T +N +++ P + +SRG + L SR+ P++
Sbjct: 356 PFDM-NTLRHGYPTT-------------ENGFSLTPNVTHARSRGTVRLRSRDFRDKPMV 401
Query: 659 YGNYFQDES--DLWTLVEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFESDDYWA 715
YF D D+ +V GI+ A ++ G +L+P E ++D+
Sbjct: 402 DPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP-------GVEAQTDEELQ 454
Query: 716 CTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAP 775
R+ TV+H GT RMG ED + +D ELRV G+ LRVADASVMP + +P
Sbjct: 455 DYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNIT 514
Query: 776 IYMIGEKCADMIK 788
+ MIGE+CAD+I+
Sbjct: 515 VMMIGERCADLIR 527
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 100 KNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDES--DLWTLVEGIKMAVNLSR 157
+N +++ P + +SRG + L SR+ P++ YF D D+ +V GI+ A ++
Sbjct: 370 ENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAA 429
Query: 158 TEPFQR-IGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTV 216
G +L+P E ++D+ R+ TV+H GT RMG ED +
Sbjct: 430 QPAMAEWTGRELSP-------GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSP 482
Query: 217 VDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
+D ELRV G+ LRVADASVMP + +P + MIGE+CAD+I+
Sbjct: 483 LDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 146/493 (29%), Positives = 227/493 (46%), Gaps = 60/493 (12%)
Query: 305 RWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIPELR 363
R R K MGG S N I D D W A G GW+ + +P + ++E
Sbjct: 86 RHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLET-NEDAGP 144
Query: 364 NSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYL-GFSRIQATTR-N 421
++PHH +G V + P K A L++ + +N + G + Q R +
Sbjct: 145 DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRAD 204
Query: 422 GKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN--GKKRIVFARK 479
G R SS +YI P+ + N + + +++ D++ ++ GV+ V + G + AR
Sbjct: 205 GTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAFGHTHRLTARN 263
Query: 480 EIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTT 538
E++LS GAI+TP +LM SG+GP HL I+V D P VGE+LQDH
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH--------PEGVV 315
Query: 539 ELFNYNTMLAQAFTMMYNISKXXXXXXXXXXXXXXXFVQTKYNTDPSYPDIEFIFAIGSL 598
+ M+A++ T + I F T+ D PD+ + GS+
Sbjct: 316 QFEAKQPMVAES-TQWWEIG---------------IFTPTEDGLD--RPDL--MMHYGSV 355
Query: 599 AADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D +T+R G T +N +++ P + +SRG + L SR+ P++
Sbjct: 356 PFDM-NTLRHGYPTT-------------ENGFSLTPNVTHARSRGTVRLRSRDFRDKPMV 401
Query: 659 YGNYFQDES--DLWTLVEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFESDDYWA 715
YF D D+ +V GI+ A ++ G +L+P E ++D+
Sbjct: 402 DPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP-------GVEAQTDEELQ 454
Query: 716 CTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAP 775
R+ T +H GT RMG ED + +D ELRV G+ LRVADASVMP + +P
Sbjct: 455 DYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNIT 514
Query: 776 IYMIGEKCADMIK 788
+ MIGE+CAD+I+
Sbjct: 515 VMMIGERCADLIR 527
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 100 KNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDES--DLWTLVEGIKMAVNLSR 157
+N +++ P + +SRG + L SR+ P++ YF D D+ +V GI+ A ++
Sbjct: 370 ENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAA 429
Query: 158 TEPFQR-IGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTV 216
G +L+P E ++D+ R+ T +H GT RMG ED +
Sbjct: 430 QPAMAEWTGRELSP-------GVEAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSP 482
Query: 217 VDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
+D ELRV G+ LRVADASVMP + +P + MIGE+CAD+I+
Sbjct: 483 LDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 144/514 (28%), Positives = 219/514 (42%), Gaps = 62/514 (12%)
Query: 308 RGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIEN------MTIPE 361
RGK +GGSS LNY + G +D+W G W++D + PY K + PE
Sbjct: 86 RGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPE 145
Query: 362 LRNSPHHSTTGYVPVGY-------NPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSR 414
L G +P+ + P++ + A+ K + Q I+ G +
Sbjct: 146 LEKI---GGGGPIPISHAELIDEMAPFRENLTKAW----KSMGQPLIENIYDGEMDGLTH 198
Query: 415 IQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV-KNGKKR 473
T G+R S+ V+N+PN+ I R++I+ + GV V G +
Sbjct: 199 CCDTIYRGQRSGSFLF----VKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNEL 254
Query: 474 IVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERD-LPVGENLQDHITMAGLA 532
FA +E+ILS G TP +LM SG+GP L I D VG+NL DH G+
Sbjct: 255 NFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDH---PGVP 311
Query: 533 FTHNTTELFNYNTMLAQ------AFTMMYNISKXXXXXXXXXXXXXXXFVQTKYNTDPSY 586
F + F + +L + A YN ++ + D Y
Sbjct: 312 FVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEY 371
Query: 587 PDIEFIFAIGSLAADSGHTVRRGMG-----ITDEC-YNQAYK-HLEQKNT---WTIWPML 636
+ AA+ G +G + C + A++ H T T+ L
Sbjct: 372 RKAK--------AANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDL 423
Query: 637 LLPKSR-GRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVN-LSRTEPFQRIGSK 694
+ P S G + L S +P + P + N+F ++ D+ + EGI+ + + L + E F+ +
Sbjct: 424 VRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVES 483
Query: 695 LNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIK 754
P +P +SD T H +GT R+ N D VVD +L+VHGIK
Sbjct: 484 EYPWEMP------LDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIK 536
Query: 755 NLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 788
LRVADASV+PI+ +Y +GEKCADMIK
Sbjct: 537 KLRVADASVIPIIPDCRIQNSVYAVGEKCADMIK 570
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 116 GRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL-SRTEPFQRIGSKLNPVPLP 174
G + L S +P + P + N+F ++ D+ + EGI+ + +L + E F+ + P +P
Sbjct: 431 GEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPWEMP 490
Query: 175 GCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADA 234
+SD T H +GT R+ N D VVD +L+VHGIK LRVADA
Sbjct: 491 ------LDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADA 543
Query: 235 SVMPILIAAHPMAPIYMIGEKCADMIK 261
SV+PI+ +Y +GEKCADMIK
Sbjct: 544 SVIPIIPDCRIQNSVYAVGEKCADMIK 570
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 11/241 (4%)
Query: 295 QCQAMVKQRCR-WPRGKGMGGSSVLNYMIYTRGTPRDYDRWA-AMGNPGWSYDEVYPYFL 352
+ QA R W RG+ +GGSS L+ M Y RG P D+ W A G+ W +DE+ P F
Sbjct: 79 EAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQ 138
Query: 353 KIENMTIPELRNSPHHSTTGYVPVGYNPYK-SQVVDAFLESSKYVNQSTIDYNQPENYLG 411
IE+ L H G +P+ + S + AF+E+ + ++ + +G
Sbjct: 139 AIEDHP---LGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIG 195
Query: 412 FSRIQATTRNGKRVSSYHAYI-EPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNG 470
+ R+G+RV++ A++ + VR R NL I S+V R+ + E + +E V
Sbjct: 196 VTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKL--EGNQVRSLEVVGRQ 253
Query: 471 KKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMA 529
VFA +I+L AGA+ +P +LM SG+GP + L++ + D+P +G NLQDH+ A
Sbjct: 254 GSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGA 312
Query: 530 G 530
G
Sbjct: 313 G 313
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
LPG E DD+ AR + T HH GTCRMG + D VVD LR+ + NL V
Sbjct: 439 LPGTPNSAAEMDDF---IARSVI-THHHPCGTCRMGKDPD--AVVDANLRLKALDNLFVV 492
Query: 233 DASVMPILIAAHPMAPIYMIGEKCA 257
DAS+MP L A A + I E A
Sbjct: 493 DASIMPNLTAGPIHAAVLAIAETFA 517
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 700 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 759
LPG E DD+ AR + T HH GTCRMG + D VVD LR+ + NL V
Sbjct: 439 LPGTPNSAAEMDDF---IARSVI-THHHPCGTCRMGKDPD--AVVDANLRLKALDNLFVV 492
Query: 760 DASVMPILIAAHPMAPIYMIGEKCA 784
DAS+MP L A A + I E A
Sbjct: 493 DASIMPNLTAGPIHAAVLAIAETFA 517
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 309 GKGMGGSSVLNYMIYTRGTPRDYDRW-AAMGNPGWSYDEVYPYFLKIENMTIPELR---- 363
G G+GGS+++N +TR D W GN GW++D V Y L+ E P +
Sbjct: 97 GNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAA 156
Query: 364 ----NSPHHSTTGYVPVG-------YNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
N+ H G V G Y+P ++ A +E + P G
Sbjct: 157 GHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA-VEDRGVPTKKDFGCGDPH---GV 212
Query: 413 SRIQATTRNGK-RVSSYHAYIEPVRNRPNLHISLNSQVTRVLI--DSESKKAYGVEF-VK 468
S T + R + ++ P RPNL + V +VL+ + + +A GVEF
Sbjct: 213 SMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTH 272
Query: 469 NGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGENLQDHIT 527
G V+A+ E++L+AG+ +P IL +SG+G + LE L I DLPVG NLQD T
Sbjct: 273 KGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTT 331
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 89 CYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYG-NYFQDESDLWTLVE 147
Y++ + ++ +W LLP +RG + + ++P Y YF +E DL
Sbjct: 409 AYSELFLDTAGVASFDVWD--LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAA 466
Query: 148 GIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESD-DYWACTARQITATVHHMSGTCR 206
++A N+S + Q + +PG +++D W +H GTC
Sbjct: 467 ATQLARNISNSGAMQ---TYFAGETIPG-DNLAYDADLSAWTEYIPYHFRPNYHGVGTCS 522
Query: 207 MGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWS 265
M E G VVDN RV+G++ LRV D S+ P +++H M Y + K +D I + ++
Sbjct: 523 MMPKEMGG-VVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYA 580
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 616 CYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYG-NYFQDESDLWTLVE 674
Y++ + ++ +W LLP +RG + + ++P Y YF +E DL
Sbjct: 409 AYSELFLDTAGVASFDVWD--LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAA 466
Query: 675 GIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESD-DYWACTARQITATVHHMSGTCR 733
++A N+S + Q + +PG +++D W +H GTC
Sbjct: 467 ATQLARNISNSGAMQ---TYFAGETIPG-DNLAYDADLSAWTEYIPYHFRPNYHGVGTCS 522
Query: 734 MGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWS 792
M E G VVDN RV+G++ LRV D S+ P +++H M Y + K +D I + ++
Sbjct: 523 MMPKEMGG-VVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYA 580
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 110/241 (45%), Gaps = 28/241 (11%)
Query: 309 GKGMGGSSVLNYMIYTRGTPRDYDRW-AAMGNPGWSYDEVYPYFLKIENMTIPELR---- 363
GKG+GGS+++N +TR D W G GW++D ++ Y K E P
Sbjct: 101 GKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAA 160
Query: 364 ----NSPHHSTTGYVPVGY----NPYKSQVVDAFLESSKYVNQSTIDYNQPENYL----- 410
N+ H T G V G P+ S ++ A + + S + +++L
Sbjct: 161 GHSFNATCHGTNGTVQSGARDNGQPW-SPIMKALMNTV-----SALGVPVQQDFLCGHPR 214
Query: 411 GFSRIQAT-TRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESK--KAYGVEFV 467
G S I N RV + A++ P R NL I V +VL + +A GV F
Sbjct: 215 GVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFG 274
Query: 468 KNGKKRI-VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGENLQDHI 526
N VFA+ E++L+AG+ +P IL +SG+G + L+ + DLPVG N+QD
Sbjct: 275 TNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQT 334
Query: 527 T 527
T
Sbjct: 335 T 335
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 7/181 (3%)
Query: 87 DECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYG-NYFQDESDLWTL 145
D + + + E K + +W L+P +RG + + S +P +F +E DL
Sbjct: 411 DVAFAELFMDTEGKINFDLWD--LIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQ 468
Query: 146 VEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTC 205
K+A +L+ + LPG + + W+ Q H +C
Sbjct: 469 AAASKLARDLTSQGAMKEY---FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSC 525
Query: 206 RMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWS 265
M E G VVD +V+G + LRV D S+ P +++H M Y + K AD I D ++
Sbjct: 526 SMMSRELGG-VVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 584
Query: 266 Q 266
+
Sbjct: 585 K 585
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 7/181 (3%)
Query: 614 DECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYG-NYFQDESDLWTL 672
D + + + E K + +W L+P +RG + + S +P +F +E DL
Sbjct: 411 DVAFAELFMDTEGKINFDLWD--LIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQ 468
Query: 673 VEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTC 732
K+A +L+ + LPG + + W+ Q H +C
Sbjct: 469 AAASKLARDLTSQGAMKEY---FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSC 525
Query: 733 RMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWS 792
M E G VVD +V+G + LRV D S+ P +++H M Y + K AD I D ++
Sbjct: 526 SMMSRELGG-VVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 584
Query: 793 Q 793
+
Sbjct: 585 K 585
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 121/502 (24%), Positives = 193/502 (38%), Gaps = 108/502 (21%)
Query: 308 RGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTI--PELRNS 365
RG+ +GG+S++N +Y R + + W D V + +E+ + P+ +
Sbjct: 99 RGRVLGGTSMINAGVYARANTKIFSASGIE----WDMDLVNQTYDWVEDTIVYKPDKQAW 154
Query: 366 PHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKRV 425
+ T ++ G P +D E+ + ST D NG R
Sbjct: 155 QSLTKTAFLEAGVLPDNGFSLDH--EAGTRLTGSTFD-----------------NNGTR- 194
Query: 426 SSYHAYIEPV-RNRPN-LHISLNSQVTRVLIDSESKKAYGVEFV---KNGKKRIVFARKE 480
HA E + + PN L +++++ V +++ S S + + NG F R E
Sbjct: 195 ---HASDELLNKGDPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGE 251
Query: 481 --IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNT 537
+I+SAG I +P +L+ SGVGP +L SL I V P VG+ L D+ N
Sbjct: 252 GEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN--------PRNF 303
Query: 538 TELFNYNTMLAQAFTMMYNISKXXXXXXXXXXXXXXXFVQTKYNTDP-SYPDIEFIFAIG 596
+ N + T++ S F Q +++ P S P F
Sbjct: 304 INILPPNPIEPSTVTVLGITSN---------------FYQCSFSSLPFSIPPFAFF---- 344
Query: 597 SLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLK-A 655
T N + H K + P S G I L S + ++ A
Sbjct: 345 -------------PNPTYPLPNSTFAHFVNK--------VPGPLSYGSITLNSDSDVRVA 383
Query: 656 PLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI---------GSKLNPVPLPGCKQY 706
P + NY+ + +DL V G+K L ++ + G + +PLP
Sbjct: 384 PNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDGFDILGIPLP----- 438
Query: 707 EFESDD-YWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMP 765
E ++DD + R+ A+ H G C +G V+D + RV GI LRV D S P
Sbjct: 439 ENQTDDAAFETFCREAVASYWHYHGGCLVG------EVLDGDFRVTGINALRVVDGSTFP 492
Query: 766 ILIAAHPMAPIYMIGEKCADMI 787
A+HP M+G I
Sbjct: 493 YSPASHPQGFYLMLGRYVGSKI 514
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 112 PKSRGRILLGSRNPLK-APLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI------ 164
P S G I L S + ++ AP + NY+ + +DL V G+K L ++ +
Sbjct: 366 PLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLP 425
Query: 165 ---GSKLNPVPLPGCKQYEFESDDY-WACTARQITATVHHMSGTCRMGINEDGTTVVDNE 220
G + +PLP E ++DD + R+ A+ H G C +G V+D +
Sbjct: 426 GIDGFDILGIPLP-----ENQTDDAAFETFCREAVASYWHYHGGCLVG------EVLDGD 474
Query: 221 LRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RV GI LRV D S P A+HP M+G I
Sbjct: 475 FRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKI 514
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 39/250 (15%)
Query: 312 MGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTT 371
+GG + +N +Y P D D +++G P S+ PY K+ + L ++ H ST
Sbjct: 88 VGGGTSVNGALYWY--PNDGDFSSSVGWPS-SWTNHAPYTSKLSS----RLPSTDHPSTD 140
Query: 372 G--YVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQ--PENYLGFSRIQATTRNGKRVSS 427
G Y+ +N VV L+ Y NQ+TI+ N ++ G+S NGKR
Sbjct: 141 GQRYLEQSFN-----VVSQLLKGQGY-NQATINDNPNYKDHVFGYSAFD--FLNGKRAGP 192
Query: 428 YHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVE-----FVKNGKKRIVFARKEII 482
Y++ RPN N V+ V+ + GV+ NG + + +I
Sbjct: 193 VATYLQTALARPNFTFKTNVMVSNVV--RNGSQILGVQTNDPTLGPNGFIPVT-PKGRVI 249
Query: 483 LSAGAINTPHILMHSGVGPREHLESLKIKVER-----------DLPVGENLQDHITMAGL 531
LSAGA T IL SG+GP + +++++ +LPVG N QD+ ++ L
Sbjct: 250 LSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NL 308
Query: 532 AFTHNTTELF 541
FTH + + +
Sbjct: 309 VFTHPSIDAY 318
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 214 TTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
+ VVD+ ++V G NL + DA ++P L +P + E+ A I
Sbjct: 488 SAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 534
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 741 TTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 787
+ VVD+ ++V G NL + DA ++P L +P + E+ A I
Sbjct: 488 SAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 534
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 39/250 (15%)
Query: 312 MGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTT 371
+GG + +N +Y P D D +++G P S+ PY K+ + L ++ H ST
Sbjct: 93 VGGGTSVNGALYWY--PNDGDFSSSVGWPS-SWTNHAPYTSKLSS----RLPSTDHPSTD 145
Query: 372 G--YVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQ--PENYLGFSRIQATTRNGKRVSS 427
G Y+ +N VV L+ Y NQ+TI+ N ++ G+S NGKR
Sbjct: 146 GQRYLEQSFN-----VVSQLLKGQGY-NQATINDNPNYKDHVFGYSAFD--FLNGKRAGP 197
Query: 428 YHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVE-----FVKNGKKRIVFARKEII 482
Y++ RPN N V+ V+ + GV+ NG + + +I
Sbjct: 198 VATYLQTALARPNFTFKTNVMVSNVV--RNGSQILGVQTNDPTLGPNGFIPVT-PKGRVI 254
Query: 483 LSAGAINTPHILMHSGVGPREHLESLKIKVER-----------DLPVGENLQDHITMAGL 531
LSAGA T IL SG+GP + +++++ +LPVG N QD+ ++ L
Sbjct: 255 LSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NL 313
Query: 532 AFTHNTTELF 541
FTH + + +
Sbjct: 314 VFTHPSIDAY 323
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 214 TTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
+ VVD+ ++V G NL + DA ++P L +P + E+ A I
Sbjct: 493 SAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 741 TTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 787
+ VVD+ ++V G NL + DA ++P L +P + E+ A I
Sbjct: 493 SAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 308 RGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPH 367
RG+ +GG+S++N +Y R Y W D V + +E+ +
Sbjct: 99 RGRVLGGTSIINAGVYARANTSIYSASGV----DWDMDLVNQTYEWVEDTIV-------- 146
Query: 368 HSTTGYVPVGYNPYKSQVVDAFLESSKYVNQS-TIDYNQPENYLGFSRIQATTRNGKRVS 426
Y P ++S AFLE+ + N ++D+ + +RI +T + K
Sbjct: 147 -----YKP-NSQSWQSVTKTAFLEAGVHPNHGFSLDHEEG------TRITGSTFDNK--G 192
Query: 427 SYHAYIEPVR--NRPNLHISLNSQVTRVLI-DSESKKAYGVEFV-KNGKKRIVFARK--E 480
+ HA E + N NL + +++ V +++ ++ A GV + NG F R E
Sbjct: 193 TRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGE 252
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDH 525
+I+SAG I TP +L+ SGVGP +L SL I V P VG+ L D+
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 298
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 20/170 (11%)
Query: 639 PKSRGRILLGSRNPLK-APLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI------ 691
P S G + L S + ++ +P + NY+ + +DL V G+K L T+ +
Sbjct: 365 PLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP 424
Query: 692 ---GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNEL 748
G + +PLP + D + R+ A+ H G C +G V+D +
Sbjct: 425 GVEGFNILGIPLPKDQT----DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDF 474
Query: 749 RVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGENKV 798
RV GI LRV D S P A+HP M+G I S + K+
Sbjct: 475 RVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASDLKI 524
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 20/170 (11%)
Query: 112 PKSRGRILLGSRNPLK-APLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI------ 164
P S G + L S + ++ +P + NY+ + +DL V G+K L T+ +
Sbjct: 365 PLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP 424
Query: 165 ---GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNEL 221
G + +PLP + D + R+ A+ H G C +G V+D +
Sbjct: 425 GVEGFNILGIPLPKDQT----DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDF 474
Query: 222 RVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGENKL 271
RV GI LRV D S P A+HP M+G I S + K+
Sbjct: 475 RVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASDLKI 524
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 308 RGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPH 367
RG+ +GG+S++N +Y R Y W D V + +E+ +
Sbjct: 99 RGRVLGGTSIINAGVYARANTSIYSASGV----DWDMDLVNQTYEWVEDTIV-------- 146
Query: 368 HSTTGYVPVGYNPYKSQVVDAFLESSKYVNQS-TIDYNQPENYLGFSRIQATTRNGKRVS 426
Y P ++S AFLE+ + N ++D+ + +RI +T + K
Sbjct: 147 -----YKP-NSQSWQSVTKTAFLEAGVHPNHGFSLDHEEG------TRITGSTFDNK--G 192
Query: 427 SYHAYIEPVR--NRPNLHISLNSQVTRVLI-DSESKKAYGVEFV-KNGKKRIVFARK--E 480
+ HA E + N NL + +++ V +++ ++ A GV + NG F R E
Sbjct: 193 TRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGE 252
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDH 525
+I+SAG I TP +L+ SGVGP +L SL I V P VG+ L D+
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 298
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 112 PKSRGRILLGSRNPLK-APLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI------ 164
P S G + L S + ++ +P + NY+ + +DL V G+K L T+ +
Sbjct: 365 PLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP 424
Query: 165 ---GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNEL 221
G + +PLP + D + R+ A+ H G C +G V+D +
Sbjct: 425 GVEGFNILGIPLPKDQT----DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDF 474
Query: 222 RVHGIKNLRVADASVMPILIAAHPMAPIYMIG 253
RV GI LRV D S P A+HP M+G
Sbjct: 475 RVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 639 PKSRGRILLGSRNPLK-APLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI------ 691
P S G + L S + ++ +P + NY+ + +DL V G+K L T+ +
Sbjct: 365 PLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP 424
Query: 692 ---GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNEL 748
G + +PLP + D + R+ A+ H G C +G V+D +
Sbjct: 425 GVEGFNILGIPLPKDQT----DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDF 474
Query: 749 RVHGIKNLRVADASVMPILIAAHPMAPIYMIG 780
RV GI LRV D S P A+HP M+G
Sbjct: 475 RVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 518 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 577
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 578 CEYIKQNFT 586
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 518 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 577
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 578 CEYIKQNFT 586
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 518 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 577
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 578 CEYIKQNFT 586
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 518 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 577
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 578 CEYIKQNFT 586
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 200 HMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCAD 258
H+ GT RMG +E + V+ + RV G KNL + +P A+P + K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 259 MIKDTWS 265
IK ++
Sbjct: 608 YIKQNFT 614
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 727 HMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCAD 785
H+ GT RMG +E + V+ + RV G KNL + +P A+P + K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 786 MIKDTWS 792
IK ++
Sbjct: 608 YIKQNFT 614
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V H+ GT R G +E + V+ + RV G KNL + +P A+P + K
Sbjct: 545 VLHLGGTHRXGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAXSLAIKS 604
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 605 CEYIKQNFT 613
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V H+ GT R G +E + V+ + RV G KNL + +P A+P + K
Sbjct: 545 VLHLGGTHRXGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAXSLAIKS 604
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 605 CEYIKQNFT 613
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 198 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
V ++ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLNLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 257 ADMIKDTWS 265
+ IK ++
Sbjct: 606 CEYIKQNFT 614
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 725 VHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
V ++ GT RMG +E + V+ + RV G KNL + +P A+P + K
Sbjct: 546 VLNLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 784 ADMIKDTWS 792
+ IK ++
Sbjct: 606 CEYIKQNFT 614
>pdb|2RGK|A Chain A, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|B Chain B, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|C Chain C, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|D Chain D, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|E Chain E, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|F Chain F, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
Length = 421
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 276 TPDGIRRRADSIQAEKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRW 334
PDG ++ E +P +V++R RWP + MG + Y +YT R Y+ W
Sbjct: 291 APDGADGIVYTVDWEGKP-----VVRERVRWPIVEAMGTA----YALYTVTGDRQYETW 340
>pdb|2ZBL|A Chain A, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|B Chain B, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|C Chain C, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|D Chain D, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|E Chain E, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|F Chain F, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
Length = 421
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 25/112 (22%)
Query: 260 IKDTWSQGENKLYANVTPDGIRRRADSIQAEKQPGQCQAMVKQRCRWPRGKGMGGSSVLN 319
I+D W+ PDG S+ + +P +V++R RWP + MG +
Sbjct: 286 IRDAWA-----------PDGADGFVYSVDWDGKP-----IVRERVRWPIVEAMGTA---- 325
Query: 320 YMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTT 371
Y +YT Y+ W +D Y + EN + + ++ + TT
Sbjct: 326 YALYTLTDDSQYEEWYQK-----WWDYCIKYLMDYENGSWWQELDADNKVTT 372
>pdb|3OA6|A Chain A, Human Msl3 Chromodomain Bound To Dna And H4k20me1 Peptide
pdb|3OA6|B Chain B, Human Msl3 Chromodomain Bound To Dna And H4k20me1 Peptide
Length = 110
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 309 GKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNS 365
GK G + Y+I+ G R +DRWAA + DE K+ + LR++
Sbjct: 50 GKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVARLRST 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,870,559
Number of Sequences: 62578
Number of extensions: 991589
Number of successful extensions: 2273
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2132
Number of HSP's gapped (non-prelim): 98
length of query: 801
length of database: 14,973,337
effective HSP length: 107
effective length of query: 694
effective length of database: 8,277,491
effective search space: 5744578754
effective search space used: 5744578754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)