BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14643
(801 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 355 bits (910), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 201/514 (39%), Positives = 294/514 (57%), Gaps = 26/514 (5%)
Query: 290 EKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYP 349
E +P C + ++QRC WPRGK +GG+SVLN M+Y RG DYD WAA GNPGW+Y++V P
Sbjct: 125 EPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLP 184
Query: 350 YFLKIE-NMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPEN 408
+F K E N+ + E+ + +H+ G +PVG PY + A L++ + + S D N +N
Sbjct: 185 FFKKSEDNLDLDEV-GTEYHAKGGLLPVGKFPYNPPLSYAILKAGEELGFSVHDLNG-QN 242
Query: 409 YLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK 468
GF Q T RNG R SS A++ P R R NLHI LN+ T++LI +K GVE
Sbjct: 243 STGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTATKILIHPHTKNVLGVEVSD 302
Query: 469 N-GKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHI 526
G R + +KE++LSAGA+N+PHIL+ SGVGP++ L+ + ++ +LP VG+NL +H+
Sbjct: 303 QFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHV 362
Query: 527 TMAGLAFTHNT-TELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPS 585
T F + T N+ T M Y + + G M S G + + T+Y P
Sbjct: 363 TYFTNFFIDDADTAPLNWAT------AMEYLLFRDGLM-SGTGISDVTAKLATRYADSPE 415
Query: 586 YPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRI 645
PD++ F G A T + G +++ + I+P +L P+SRG I
Sbjct: 416 RPDLQLYF--GGYLASCARTGQVGELLSN-----------NSRSIQIFPAVLNPRSRGFI 462
Query: 646 LLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQ 705
L S +PL+ P + NY E D+ TLVEGIK + LS+T P ++ G +L+ + GC+
Sbjct: 463 GLRSADPLEPPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEA 522
Query: 706 YEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMP 765
+ F SD YW C RQ T +H +G+C+MG + D VV++ELRVHGI+ LRV D S+MP
Sbjct: 523 HAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIRGLRVMDTSIMP 582
Query: 766 ILIAAHPMAPIYMIGEKCADMIKDTWSQGENKVE 799
+ + + AP MI EK A ++K W +V+
Sbjct: 583 KVSSGNTHAPAVMIAEKGAYLLKRAWGAKVURVD 616
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 13/216 (6%)
Query: 49 VQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPM 108
+ T+Y P PD++ F G A T + G +++ + I+P
Sbjct: 406 LATRYADSPERPDLQLYF--GGYLASCARTGQVGELLSN-----------NSRSIQIFPA 452
Query: 109 LLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL 168
+L P+SRG I L S +PL+ P + NY E D+ TLVEGIK + LS+T P ++ G +L
Sbjct: 453 VLNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPLKQYGMRL 512
Query: 169 NPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKN 228
+ + GC+ + F SD YW C RQ T +H +G+C+MG + D VV++ELRVHGI+
Sbjct: 513 DKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIRG 572
Query: 229 LRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTW 264
LRV D S+MP + + + AP MI EK A ++K W
Sbjct: 573 LRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKRAW 608
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 353 bits (905), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 200/507 (39%), Positives = 287/507 (56%), Gaps = 24/507 (4%)
Query: 296 CQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIE 355
C + ++QRC WPRGK +GG+SV+N M+Y RG DYD WAA GNPGWSY +V P+F K E
Sbjct: 131 CLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSE 190
Query: 356 NMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRI 415
+ + + +H+ G +PVG PY + A L++ + + S D N +N GF
Sbjct: 191 DNLELDAVGTEYHAKGGLLPVGKFPYNPPLSYALLKAGEEMGFSVQDLNG-QNSTGFMIA 249
Query: 416 QATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN-GKKRI 474
Q T RNG R SS A++ P R R NLHI LN+ VT+VLI +K GVE G R
Sbjct: 250 QMTARNGIRYSSARAFLRPARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRK 309
Query: 475 VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAF 533
+ +KE+I+S GA+N+P IL+ SGVGP+E L+ + ++ LP VG+NL +H+ F
Sbjct: 310 ILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYFTNFF 369
Query: 534 THNT-TELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFI 592
+ T N+ T M Y + + G M S G + + T++ P+ PD++
Sbjct: 370 IDDADTAPLNWAT------AMEYLLFRDGLM-SGTGISDVTAKMATRWADRPNLPDLQLY 422
Query: 593 FAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNP 652
F G A T G E + + ++ I+P +L PKSRG I L S +P
Sbjct: 423 F--GGYLASCART-----GQVGELLSNNSRAIQ------IFPAVLNPKSRGYITLRSADP 469
Query: 653 LKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDD 712
L P ++ NY DE D+ TLVEGIK A+ LS+T P ++ G +L+ + GC+ + F SD
Sbjct: 470 LDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCESHAFASDA 529
Query: 713 YWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHP 772
YW C RQ T +H +G+C+MG + D VV++ELRVHG++ LRV D S+MP + A +
Sbjct: 530 YWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGNT 589
Query: 773 MAPIYMIGEKCADMIKDTWSQGENKVE 799
AP MI EK A ++K W +V+
Sbjct: 590 HAPAVMIAEKGAYLLKRAWGAKVURVD 616
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 124/216 (57%), Gaps = 13/216 (6%)
Query: 49 VQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPM 108
+ T++ P+ PD++ F G A T G E + + ++ I+P
Sbjct: 406 MATRWADRPNLPDLQLYF--GGYLASCART-----GQVGELLSNNSRAIQ------IFPA 452
Query: 109 LLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL 168
+L PKSRG I L S +PL P ++ NY DE D+ TLVEGIK A+ LS+T P ++ G +L
Sbjct: 453 VLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRL 512
Query: 169 NPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKN 228
+ + GC+ + F SD YW C RQ T +H +G+C+MG + D VV++ELRVHG++
Sbjct: 513 DKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRG 572
Query: 229 LRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTW 264
LRV D S+MP + A + AP MI EK A ++K W
Sbjct: 573 LRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAW 608
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 246 bits (627), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 167/493 (33%), Positives = 243/493 (49%), Gaps = 53/493 (10%)
Query: 306 WPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIP-ELRN 364
WPRGK +GGSS +N M++ RG DYD WAA P WSY +V YF +IEN+T +
Sbjct: 78 WPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIENVTAAWHFVS 137
Query: 365 SPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKR 424
TG + + V A+L +++ + N P GF T R G R
Sbjct: 138 GDDSGVTGPLHISRQRSPRSVTAAWLAAARECGFAAARPNSPRPE-GFCETVVTQRRGAR 196
Query: 425 VSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILS 484
S+ AY++P R NL + + TRV+ID + +A GVE+ +G+ RIV+AR+E++L
Sbjct: 197 FSTADAYLKPAMRRKNLRVLTGATATRVVIDGD--RAVGVEYQSDGQTRIVYARREVVLC 254
Query: 485 AGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNY 543
AGA+N+P +LM SG+G R+HL I P VG NL DH+ L F LF
Sbjct: 255 AGAVNSPQLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLVTV-LGFDVEKDSLFAA 313
Query: 544 NTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIG-----SL 598
+ Y + + G + S G E GFV+++ + PD+E IFA +L
Sbjct: 314 EK---PGQLISYLLRRRGMLTSNVG--EAYGFVRSR--PELKLPDLELIFAPAPFYDEAL 366
Query: 599 AADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
+GH V G P+L+ P+SRG+I L S +P P++
Sbjct: 367 VPPAGHGVVFG------------------------PILVAPQSRGQITLRSADPHAKPVI 402
Query: 659 YGNYFQDES--DLWTLVEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFESDDYWA 715
Y D D ++ G+++ +++ P + +GS P + E
Sbjct: 403 EPRYLSDLGGVDRAAMMAGLRICARIAQARPLRDLLGSIARPRNSTELDEATLE------ 456
Query: 716 CTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAP 775
+ T++H GTCRMG +E +VVD +LRV G+ LRVADASVMP + H AP
Sbjct: 457 LALATCSHTLYHPMGTCRMGSDE--ASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAP 514
Query: 776 IYMIGEKCADMIK 788
+IGEK AD+I+
Sbjct: 515 SVLIGEKAADLIR 527
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 42/226 (18%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIG-----SLAADSGHTVRRGMGITDECYNQAYKHLE 98
E GFV+++ + PD+E IFA +L +GH V G
Sbjct: 336 EAYGFVRSR--PELKLPDLELIFAPAPFYDEALVPPAGHGVVFG---------------- 377
Query: 99 QKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDES--DLWTLVEGIKMAVNLS 156
P+L+ P+SRG+I L S +P P++ Y D D ++ G+++ ++
Sbjct: 378 --------PILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIA 429
Query: 157 RTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTT 215
+ P + + GS P + E + T++H GTCRMG +E +
Sbjct: 430 QARPLRDLLGSIARPRNSTELDEATLE------LALATCSHTLYHPMGTCRMGSDE--AS 481
Query: 216 VVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
VVD +LRV G+ LRVADASVMP + H AP +IGEK AD+I+
Sbjct: 482 VVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIR 527
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 246 bits (627), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 167/493 (33%), Positives = 243/493 (49%), Gaps = 53/493 (10%)
Query: 306 WPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIP-ELRN 364
WPRGK +GGSS +N M++ RG DYD WAA P WSY +V YF +IEN+T +
Sbjct: 78 WPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIENVTAAWHFVS 137
Query: 365 SPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKR 424
TG + + V A+L +++ + N P GF T R G R
Sbjct: 138 GDDSGVTGPLHISRQRSPRSVTAAWLAAARECGFAAARPNSPRPE-GFCETVVTQRRGAR 196
Query: 425 VSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILS 484
S+ AY++P R NL + + TRV+ID + +A GVE+ +G+ RIV+AR+E++L
Sbjct: 197 FSTADAYLKPAMRRKNLRVLTGATATRVVIDGD--RAVGVEYQSDGQTRIVYARREVVLC 254
Query: 485 AGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNY 543
AGA+N+P +LM SG+G R+HL I P VG NL DH+ L F LF
Sbjct: 255 AGAVNSPQLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLVTV-LGFDVEKDSLFAA 313
Query: 544 NTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIG-----SL 598
+ Y + + G + S G E GFV+++ + PD+E IFA +L
Sbjct: 314 EK---PGQLISYLLRRRGMLTSNVG--EAYGFVRSR--PELKLPDLELIFAPAPFYDEAL 366
Query: 599 AADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
+GH V G P+L+ P+SRG+I L S +P P++
Sbjct: 367 VPPAGHGVVFG------------------------PILVAPQSRGQITLRSADPHAKPVI 402
Query: 659 YGNYFQDES--DLWTLVEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFESDDYWA 715
Y D D ++ G+++ +++ P + +GS P + E
Sbjct: 403 EPRYLSDLGGVDRAAMMAGLRICARIAQARPLRDLLGSIARPRNSTELDEATLE------ 456
Query: 716 CTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAP 775
+ T++H GTCRMG +E +VVD +LRV G+ LRVADASVMP + H AP
Sbjct: 457 LALATCSHTLYHPMGTCRMGSDE--ASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAP 514
Query: 776 IYMIGEKCADMIK 788
+IGEK AD+I+
Sbjct: 515 SVLIGEKAADLIR 527
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 42/226 (18%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIG-----SLAADSGHTVRRGMGITDECYNQAYKHLE 98
E GFV+++ + PD+E IFA +L +GH V G
Sbjct: 336 EAYGFVRSR--PELKLPDLELIFAPAPFYDEALVPPAGHGVVFG---------------- 377
Query: 99 QKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDES--DLWTLVEGIKMAVNLS 156
P+L+ P+SRG+I L S +P P++ Y D D ++ G+++ ++
Sbjct: 378 --------PILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIA 429
Query: 157 RTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTT 215
+ P + + GS P + E + T++H GTCRMG +E +
Sbjct: 430 QARPLRDLLGSIARPRNSTELDEATLE------LALATCSHTLYHPMGTCRMGSDE--AS 481
Query: 216 VVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
VVD +LRV G+ LRVADASVMP + H AP +IGEK AD+I+
Sbjct: 482 VVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIR 527
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 168/509 (33%), Positives = 248/509 (48%), Gaps = 56/509 (11%)
Query: 292 QPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYF 351
Q Q + ++ WPRGK +GGSS +N M+Y RG DY W G W + + F
Sbjct: 62 QTAPQQHLNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKRAFALF 121
Query: 352 LKIENMTIPELRNSPHHSTTGYVPVG----YNPYKSQVVDAFLESSKYVNQSTIDYNQPE 407
K+E+ S +H T G + V NP V A +E+ N D+N
Sbjct: 122 KKLEHNQ--RFDKSNYHGTDGELAVSDLKDLNPLSKSFVQAGMEAKISFNG---DFNGAH 176
Query: 408 NYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV 467
G Q T ++G+R SS A++ V +RPNL I + T+VL E +KA GV ++
Sbjct: 177 QE-GVGFYQVTQKHGQRWSSARAFLHDVIDRPNLDIITEAHATKVLF--EDRKAVGVSYI 233
Query: 468 KNGKKRIVFARK--EIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQD 524
+ + V E+ILS GA+NTP +LM SGVG L+ I + DLP VG+NLQD
Sbjct: 234 QKNMHQQVKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVGKNLQD 293
Query: 525 HITMAGLAFTHNTTELFNYNTMLAQAFTMMYN--ISKGGGMGSIPGGVEGIGFVQTKYNT 582
H+ + + ++ T + + + + +++ + G + S E GFV++
Sbjct: 294 HLDITLMCAANSRTPIGVAFSFIPRGLVGLFSYIFKRKGFLTS--NVAESGGFVKSSPER 351
Query: 583 DPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSR 642
D P+++F F + + D G + G G +T+ LLPKSR
Sbjct: 352 D--RPNLQFHF-LPTYLKDHGRKIAVGYG------------------YTLHICDLLPKSR 390
Query: 643 GRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL----SRTEPFQRIGSKLNPV 698
GRI L S NP+ PL+ NY D D+ T++ GIK+ + S + F+R V
Sbjct: 391 GRIGLKSANPMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHFKR-----EIV 445
Query: 699 PLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRV 758
P P SDD R T++H GTCRMG +D +VVD L+V G++N+RV
Sbjct: 446 PGPAVT-----SDDEIVADIRSRAETIYHPVGTCRMG--KDPASVVDPCLQVRGLRNIRV 498
Query: 759 ADASVMPILIAAHPMAPIYMIGEKCADMI 787
DAS+MP L+A + AP MI E A++I
Sbjct: 499 VDASIMPNLVAGNTNAPTIMIAENAAEII 527
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 110/221 (49%), Gaps = 37/221 (16%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E GFV++ D P+++F F + + D G + G G +
Sbjct: 340 ESGGFVKSSPERD--RPNLQFHF-LPTYLKDHGRKIAVGYG------------------Y 378
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL----SRTE 159
T+ LLPKSRGRI L S NP+ PL+ NY D D+ T++ GIK+ + S +
Sbjct: 379 TLHICDLLPKSRGRIGLKSANPMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAK 438
Query: 160 PFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDN 219
F+R VP P SDD R T++H GTCRMG +D +VVD
Sbjct: 439 HFKR-----EIVPGPAVT-----SDDEIVADIRSRAETIYHPVGTCRMG--KDPASVVDP 486
Query: 220 ELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
L+V G++N+RV DAS+MP L+A + AP MI E A++I
Sbjct: 487 CLQVRGLRNIRVVDASIMPNLVAGNTNAPTIMIAENAAEII 527
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 165/507 (32%), Positives = 242/507 (47%), Gaps = 52/507 (10%)
Query: 290 EKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYP 349
E QPG M + WPRG+ GGSS LN M+Y RG DY+RW G GW Y P
Sbjct: 112 EPQPG----MDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLP 167
Query: 350 YFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENY 409
YF K + EL + + G + V + AFL++++ +
Sbjct: 168 YFRKAQRH---ELGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQ 224
Query: 410 LGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN 469
GF + T GKR S+ AY+ PV +RPNL + + V+RVL E +A GVE++K+
Sbjct: 225 EGFGWMDMTVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLF--EGTRAVGVEYIKD 282
Query: 470 GKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITM 528
G++ + +E+ILS GAIN+P +LM SGVG + L L I V LP VG+NLQDH+ +
Sbjct: 283 GQRHKAYVSREVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEV 342
Query: 529 AGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPD 588
L + L + + + G G+ +E GF++++ +PD
Sbjct: 343 YVQQACTQPITLHSAQKPLRKVCIGLEWLWSYTGDGAT-AHLETGGFIRSRPGV--PHPD 399
Query: 589 IEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLG 648
I+F F + S D G + Q+ + + + S G + L
Sbjct: 400 IQFHF-LPSQVIDHG------------------RKPTQQEAYQVHVGTMRATSVGWLKLR 440
Query: 649 SRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT-------EPFQRIGSKLNPVPLP 701
S NP P+++ NY E+D VE + V LSR PF+ G +L P
Sbjct: 441 SANPRDHPVIHPNYLSTETD----VEDFRQCVRLSREIFAQEALAPFR--GKELQP---- 490
Query: 702 GCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADA 761
+SD R + +H S TC+MG + D T VVD + +V G++NLRV DA
Sbjct: 491 ---GSHVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDA 547
Query: 762 SVMPILIAAHPMAPIYMIGEKCADMIK 788
S+MP +++ + AP MI EK AD+IK
Sbjct: 548 SIMPSVVSGNLNAPTVMIAEKAADIIK 574
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 41/226 (18%)
Query: 43 VEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNT 102
+E GF++++ +PDI+F F + S D G + Q+
Sbjct: 383 LETGGFIRSRPGV--PHPDIQFHF-LPSQVIDHG------------------RKPTQQEA 421
Query: 103 WTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT---- 158
+ + + S G + L S NP P+++ NY E+D VE + V LSR
Sbjct: 422 YQVHVGTMRATSVGWLKLRSANPRDHPVIHPNYLSTETD----VEDFRQCVRLSREIFAQ 477
Query: 159 ---EPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTT 215
PF+ G +L P +SD R + +H S TC+MG + D T
Sbjct: 478 EALAPFR--GKELQP-------GSHVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTA 528
Query: 216 VVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
VVD + +V G++NLRV DAS+MP +++ + AP MI EK AD+IK
Sbjct: 529 VVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADIIK 574
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/503 (31%), Positives = 237/503 (47%), Gaps = 48/503 (9%)
Query: 306 WPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNS 365
WPRG+ GGSS LN M+Y RG DY+RW G GW Y PYF K + EL +
Sbjct: 127 WPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKAQKH---ELGAN 183
Query: 366 PHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKRV 425
+ G + V + AFL++++ + GF + T GKR
Sbjct: 184 MYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTIHQGKRW 243
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ AY+ P +RPNL + + V+RVL E +A GVE++K+G+ + +E+ILS
Sbjct: 244 STASAYLRPALSRPNLRAEVQTLVSRVLF--EGTRAVGVEYIKDGQSHKAYVSREVILSG 301
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNYN 544
GAIN+P +LM SGVG + L+ L I V LP VG+NLQDH+ + H T+ +
Sbjct: 302 GAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLE---IYIQHACTQPITLH 358
Query: 545 TM------LAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSL 598
+ + ++ + G + G GF++++ +PDI+F F + S
Sbjct: 359 SAQKPLRKVCIGLEWLWRFTGDGATAHLETG----GFIRSRPGV--PHPDIQFHF-LPSQ 411
Query: 599 AADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + Q+ + + + S G + L S NP P++
Sbjct: 412 VIDHG------------------RKPTQQEAYQVHVGTMRATSVGWLKLRSTNPQDHPMI 453
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACT 717
NY E+D+ + +K+ + E F G +L P +SD
Sbjct: 454 NPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGKELQP-------GSHVQSDKEIDAF 506
Query: 718 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIY 777
R + +H S TC+MG D T VVD + RV G++NLRV DAS+MP +++ + AP
Sbjct: 507 VRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLNAPTI 566
Query: 778 MIGEKCADMIKDTWSQGENKVEI 800
MI EK AD+IK + G+ V +
Sbjct: 567 MIAEKAADVIKGCPALGDENVPV 589
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 29/230 (12%)
Query: 43 VEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNT 102
+E GF++++ +PDI+F F + S D G + Q+
Sbjct: 386 LETGGFIRSRPGV--PHPDIQFHF-LPSQVIDHG------------------RKPTQQEA 424
Query: 103 WTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQ 162
+ + + S G + L S NP P++ NY E+D+ + +K+ + E F
Sbjct: 425 YQVHVGTMRATSVGWLKLRSTNPQDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFA 484
Query: 163 RI-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNEL 221
G +L P +SD R + +H S TC+MG D T VVD +
Sbjct: 485 PFRGKELQP-------GSHVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQT 537
Query: 222 RVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGENKL 271
RV G++NLRV DAS+MP +++ + AP MI EK AD+IK + G+ +
Sbjct: 538 RVIGVENLRVIDASIMPSVVSGNLNAPTIMIAEKAADVIKGCPALGDENV 587
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 223 bits (569), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 163/491 (33%), Positives = 233/491 (47%), Gaps = 48/491 (9%)
Query: 306 WPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNS 365
WPRG+ GGSS LN M+Y RG DY+RW G GW Y PYF K + EL S
Sbjct: 122 WPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH---ELGAS 178
Query: 366 PHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKRV 425
+ G + V + AFLE+++ + GF + T GKR
Sbjct: 179 RYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRW 238
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ AY+ P +R NL + V+RVL E +A GVE+VKNG+ +A KE+ILS
Sbjct: 239 SAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSG 296
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNYN 544
GAIN+P +LM SG+G + L+ L I V LP VG+NLQDH+ + L +
Sbjct: 297 GAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQ 356
Query: 545 TMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGH 604
L + + + K G G+ +E GF++++ +PDI+F F + S D G
Sbjct: 357 KPLRKVCIGLEWLWKFTGEGAT-AHLETGGFIRSQPGV--PHPDIQFHF-LPSQVIDHGR 412
Query: 605 TVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQ 664
Q+ + + + S G + L S NP P++ NY
Sbjct: 413 VP------------------TQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLS 454
Query: 665 DESDLWTLVEGIKMAVNLSRT-------EPFQRIGSKLNPVPLPGCKQYEFESDDYWACT 717
E+D +E ++ V L+R PF+ G +L P +SD
Sbjct: 455 TETD----IEDFRLCVKLTREIFAQEALAPFR--GKELQP-------GSHIQSDKEIDAF 501
Query: 718 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIY 777
R + +H S TC+MG D T VVD + RV G++NLRV DAS+MP +++ + AP
Sbjct: 502 VRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTI 561
Query: 778 MIGEKCADMIK 788
MI EK AD+IK
Sbjct: 562 MIAEKAADIIK 572
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT-------EPFQRIGS 166
S G + L S NP P++ NY E+D +E ++ V L+R PF+ G
Sbjct: 431 SVGWLKLRSANPQDHPVIQPNYLSTETD----IEDFRLCVKLTREIFAQEALAPFR--GK 484
Query: 167 KLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGI 226
+L P +SD R + +H S TC+MG D T VVD + RV G+
Sbjct: 485 ELQP-------GSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGV 537
Query: 227 KNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
+NLRV DAS+MP +++ + AP MI EK AD+IK
Sbjct: 538 ENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 163/503 (32%), Positives = 246/503 (48%), Gaps = 55/503 (10%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WA + G W+Y + PYF + E
Sbjct: 76 MNNRRMECGRGKGLGGSSLINGMCYLRGNALDYDNWAKIPGLEDWNYLQCLPYFKRAETR 135
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G N + A +E+ + Y Q GF
Sbjct: 136 DIGP---NDYHGGDGPVSVATPKEGNNELYGAFIRAGIEAGYPATEDVNGYQQE----GF 188
Query: 413 SRI-QATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGK 471
+ + TT NG+R S+ Y++ + RPNL ++ + T +I+ E K+A GV + + G+
Sbjct: 189 GPMDRTTTPNGRRASTARGYLDIAKQRPNL--TIETHATTDVIEFEGKRAVGVSYERKGQ 246
Query: 472 KRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAG 530
+ V AR+E++L AGAI +P IL SGVG EHLE I V +LP VGENLQDH+ M
Sbjct: 247 AQRVRARREVLLCAGAIASPQILQRSGVGNPEHLEEFDIPVVHELPGVGENLQDHLEMYI 306
Query: 531 LAFTHNTTELFN----YNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSY 586
L+ YN A + + G G+G+ E GF++T N +
Sbjct: 307 QYECKKPISLYPALKWYNQPKIGAEWLFF----GKGIGA-SNQFEAAGFIRT--NDQEEW 359
Query: 587 PDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRIL 646
P++++ F +++ + V+ H Q + ++ M SRGRI
Sbjct: 360 PNLQYHFLPIAISYNGKSAVQ--------------AHGFQAHVGSMRSM-----SRGRIR 400
Query: 647 LGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQ 705
L SR+P AP + NY + D + I++ + G +++P P Q
Sbjct: 401 LTSRDPKAAPSILFNYMSHDKDWQEFRDAIRITREIIEQPTMDEYRGREISPGP---NVQ 457
Query: 706 YEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMP 765
+ E D++ RQ T +H +G+C+MG +D VVD RVHG++ LRV DAS+MP
Sbjct: 458 SDAELDEF----VRQHAETAYHPAGSCKMGSADDAMAVVDGAGRVHGLEGLRVIDASIMP 513
Query: 766 ILIAAHPMAPIYMIGEKCADMIK 788
++ + AP MI EK AD ++
Sbjct: 514 VIATGNLNAPTIMIAEKMADKVR 536
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 30/230 (13%)
Query: 33 GGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQ 92
G G+G+ E GF++T N +P++++ F +++ + V+
Sbjct: 336 GKGIGA-SNQFEAAGFIRT--NDQEEWPNLQYHFLPIAISYNGKSAVQ------------ 380
Query: 93 AYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMA 152
H Q + ++ M SRGRI L SR+P AP + NY + D + I++
Sbjct: 381 --AHGFQAHVGSMRSM-----SRGRIRLTSRDPKAAPSILFNYMSHDKDWQEFRDAIRIT 433
Query: 153 VNLSRTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINE 211
+ G +++P P Q + E D++ RQ T +H +G+C+MG +
Sbjct: 434 REIIEQPTMDEYRGREISPGP---NVQSDAELDEF----VRQHAETAYHPAGSCKMGSAD 486
Query: 212 DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
D VVD RVHG++ LRV DAS+MP++ + AP MI EK AD ++
Sbjct: 487 DAMAVVDGAGRVHGLEGLRVIDASIMPVIATGNLNAPTIMIAEKMADKVR 536
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 161/501 (32%), Positives = 244/501 (48%), Gaps = 68/501 (13%)
Query: 306 WPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNS 365
WPRGK +GGSS +N M+Y RG DY W W + F ++E S
Sbjct: 76 WPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYRALELFKRLE--CNQRFDKS 133
Query: 366 PHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQS-TIDYN-QPENYLGFSRIQATTRNGK 423
HH G + V Y + + AF+++ N + D+N + ++ +GF Q T +NG+
Sbjct: 134 EHHGVDGELAVSDLKYINPLSKAFVQAGMEANINFNGDFNGEYQDGVGF--YQVTQKNGQ 191
Query: 424 RVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARK--EI 481
R SS A++ V +RPNL I ++ +++L E +KA GV ++K V E+
Sbjct: 192 RWSSARAFLHGVLSRPNLDIITDAHASKILF--EDRKAVGVSYIKKNMHHQVKTTSGGEV 249
Query: 482 ILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMA----------- 529
+LS GA+ TPH+LM SGVG L+ + + DLP VG+NLQDH+ +
Sbjct: 250 LLSLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEVGKNLQDHLDITLMCAANSREPI 309
Query: 530 GLAFT---HNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSY 586
G+A + + LF+Y + + + N+++ GG K + D
Sbjct: 310 GVALSFIPRGVSGLFSY--VFKREGFLTSNVAESGGF--------------VKSSPDRDR 353
Query: 587 PDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRIL 646
P+++F F + + D G + G G +T+ LLPKSRGRI
Sbjct: 354 PNLQFHF-LPTYLKDHGRKIAGGYG------------------YTLHICDLLPKSRGRIG 394
Query: 647 LGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQY 706
L S NPL+ PL+ NY D D+ T++ GIK+ + + P K VP K
Sbjct: 395 LKSANPLQPPLIDPNYLSDHEDIKTMIAGIKIGRAILQA-PSMAKHFKHEVVPGQAVK-- 451
Query: 707 EFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPI 766
+DD R+ T++H GTCRMG +D +VVD L++ G+ N+RV DAS+MP
Sbjct: 452 ---TDDEIIEDIRRRAETIYHPVGTCRMG--KDPASVVDPCLKIRGLANIRVVDASIMPH 506
Query: 767 LIAAHPMAPIYMIGEKCADMI 787
L+A + AP MI E A++I
Sbjct: 507 LVAGNTNAPTIMIAENAAEII 527
Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 29/217 (13%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E GFV++ + D P+++F F + + D G + G G +
Sbjct: 340 ESGGFVKSSPDRD--RPNLQFHF-LPTYLKDHGRKIAGGYG------------------Y 378
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR 163
T+ LLPKSRGRI L S NPL+ PL+ NY D D+ T++ GIK+ + + P
Sbjct: 379 TLHICDLLPKSRGRIGLKSANPLQPPLIDPNYLSDHEDIKTMIAGIKIGRAILQA-PSMA 437
Query: 164 IGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRV 223
K VP K +DD R+ T++H GTCRMG +D +VVD L++
Sbjct: 438 KHFKHEVVPGQAVK-----TDDEIIEDIRRRAETIYHPVGTCRMG--KDPASVVDPCLKI 490
Query: 224 HGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
G+ N+RV DAS+MP L+A + AP MI E A++I
Sbjct: 491 RGLANIRVVDASIMPHLVAGNTNAPTIMIAENAAEII 527
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 159/491 (32%), Positives = 240/491 (48%), Gaps = 43/491 (8%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N M+Y RG D+DRW +G GW+Y +V PY+ ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V P K+ + AF+E+ K + T DYN + GF ++ TT
Sbjct: 133 ---EGWRGTDGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDYNGSKQE-GFGLMEQTTW 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
G+R S+ AY+ P RPN+ + + +++I E+ +A GVE + G+ +V A +E
Sbjct: 189 RGRRWSAASAYLRPALKRPNVEL-VRCFARKIVI--ENGRATGVEIERGGRTEVVRANRE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP HL+ + I V+ D P VG+NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDHMEFYFQQVSTKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + G+G I E F+++ PDI++ F +++
Sbjct: 306 LYSWLPWFWQGVAGAQWLFFKRGLG-ISNQFESCAFLRSAPGV--KQPDIQYHFLPVAIS 362
Query: 600 ADSGHTVRRGMGITDEC-YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + G YN L KSRG + L S +P P++
Sbjct: 363 YD-GKAAAKSHGFQVHVGYN-------------------LSKSRGDVTLRSSDPKADPVI 402
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL--NPVPLPGCKQYEFESDDYWAC 716
NY D W E + V L+R E F + L P PG K +D+
Sbjct: 403 RFNYMSHPED-W---EKFRHCVRLTR-EIFGQKAFDLYRGPEIQPGEK---VRTDEEIDA 454
Query: 717 TARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPI 776
R+ + +H GTC+MG +D VVD E RV G+ LRVAD+S+ P + + AP
Sbjct: 455 FLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPS 514
Query: 777 YMIGEKCADMI 787
M GEK AD I
Sbjct: 515 IMTGEKAADHI 525
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL-- 168
L KSRG + L S +P P++ NY D W E + V L+R E F + L
Sbjct: 382 LSKSRGDVTLRSSDPKADPVIRFNYMSHPED-W---EKFRHCVRLTR-EIFGQKAFDLYR 436
Query: 169 NPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKN 228
P PG K +D+ R+ + +H GTC+MG +D VVD E RV G+
Sbjct: 437 GPEIQPGEK---VRTDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDG 493
Query: 229 LRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
LRVAD+S+ P + + AP M GEK AD I
Sbjct: 494 LRVADSSIFPHITYGNLNAPSIMTGEKAADHI 525
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 237/489 (48%), Gaps = 39/489 (7%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N M+Y RG D+DRW +G GW+Y +V PYF ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V P K+ + AF+E+ K + T DYN + GF ++ TT
Sbjct: 133 ---DGWRGTDGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDYNGSKQE-GFGLMEQTTW 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
G+R S+ AY++P RPN+ + + +++I E+ +A GVE + G+ +V A +E
Sbjct: 189 RGRRWSAASAYLKPALKRPNVQL-IRCFARKIVI--ENGRATGVEIERGGRIEVVKANRE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP HL+ L I V+ D P VG+NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHMEFYFQQISTKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + G+G I E F+++ PDI++ F ++
Sbjct: 306 LYSWLPWFWQGVAGAQWLFFKSGLG-ISNQFEACAFLRSAPGV--KQPDIQYHFLPVAIR 362
Query: 600 ADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLY 659
D YN L KSRG + L + +P P++
Sbjct: 363 YDGKAAANTHGFQVHVGYN-------------------LSKSRGSVTLRASDPKADPVIR 403
Query: 660 GNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL-NPVPLPGCKQYEFESDDYWACTA 718
NY D W E + V L+R Q+ + P PG + ++D+
Sbjct: 404 FNYMSHPED-W---EKFRHCVRLTREIFGQKAFDQYRGPEIQPGER---VQTDEEIDAFL 456
Query: 719 RQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYM 778
R+ + +H GTC+MG +D VVD E RV G+ LRVAD+S+ P + + AP M
Sbjct: 457 REHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSIM 516
Query: 779 IGEKCADMI 787
GEK AD I
Sbjct: 517 TGEKAADHI 525
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 8/151 (5%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLN- 169
L KSRG + L + +P P++ NY D W E + V L+R Q+ +
Sbjct: 382 LSKSRGSVTLRASDPKADPVIRFNYMSHPED-W---EKFRHCVRLTREIFGQKAFDQYRG 437
Query: 170 PVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNL 229
P PG + ++D+ R+ + +H GTC+MG +D VVD E RV G+ L
Sbjct: 438 PEIQPGER---VQTDEEIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGL 494
Query: 230 RVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RVAD+S+ P + + AP M GEK AD I
Sbjct: 495 RVADSSIFPHVTYGNLNAPSIMTGEKAADHI 525
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 160/489 (32%), Positives = 237/489 (48%), Gaps = 45/489 (9%)
Query: 308 RGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENMTIPELRNSP 366
RGK +GGSS +N MIY RG P DY++WA G W Y PYF ++E T + P
Sbjct: 83 RGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYAHCLPYFKRLET-TFGSKKGDP 141
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTRNGKRV 425
+ G + + P + + AF ++ T D N GF + NG+RV
Sbjct: 142 YRGHHGPIKLRRGPADNPLFQAFFDAGVEAGYNKTPDVNGFRQE-GFGPFDSQVHNGRRV 200
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ AY+ P R NL + + VT+ ++ E K GV F KNGK+ A KE+ILS
Sbjct: 201 SASRAYLHPAMKRKNLEVQTRAFVTK--LNFEGNKVTGVTFKKNGKEHTESA-KEVILSG 257
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITM-AGLAFTHNTTELFNY 543
GAIN+P +L SG+G EHL SL I+ LP VGEN +DH+ + A + +
Sbjct: 258 GAINSPQLLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHLEVYVQHACKQPVSMQPSL 317
Query: 544 NTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSG 603
N + + + + + G S EG GFV++ N D YP++ F F ++ D
Sbjct: 318 NKLKMPFIGLQWILGRKGAAAS--NHFEGGGFVRS--NDDVDYPNLMFHFLPIAVRYDG- 372
Query: 604 HTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYF 663
T Y+ + PM SRG + + S++P + P NY
Sbjct: 373 ---------TKAPAAHGYQ-------VHVGPM--YSNSRGHLKIKSKDPFEKPEFVFNYL 414
Query: 664 QDESDLWTLVEGIKMAVNLSRT---EPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQ 720
E D VE IK+A N+ + +PF G +++P P E ++D+ ++
Sbjct: 415 STEEDKREWVEAIKVARNILKQKALDPFN--GGEISPGP-------EVQTDEEIIEWVKR 465
Query: 721 ITATVHHMSGTCRMGINEDGTTVVDNE-LRVHGIKNLRVADASVMPILIAAHPMAPIYMI 779
T H S +CRMG D +VVD E +VHG++NLRV DASVMP + +P+ M+
Sbjct: 466 DGETALHPSCSCRMGPASDEMSVVDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMM 525
Query: 780 GEKCADMIK 788
E+ +D+I+
Sbjct: 526 AERASDIIR 534
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 34/222 (15%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
EG GFV++ N D YP++ F F ++ D T Y+
Sbjct: 343 EGGGFVRS--NDDVDYPNLMFHFLPIAVRYDG----------TKAPAAHGYQ-------V 383
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT---EP 160
+ PM SRG + + S++P + P NY E D VE IK+A N+ + +P
Sbjct: 384 HVGPMY--SNSRGHLKIKSKDPFEKPEFVFNYLSTEEDKREWVEAIKVARNILKQKALDP 441
Query: 161 FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNE 220
F G +++P P E ++D+ ++ T H S +CRMG D +VVD E
Sbjct: 442 FN--GGEISPGP-------EVQTDEEIIEWVKRDGETALHPSCSCRMGPASDEMSVVDPE 492
Query: 221 -LRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
+VHG++NLRV DASVMP + +P+ M+ E+ +D+I+
Sbjct: 493 TFKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAERASDIIR 534
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 242/487 (49%), Gaps = 45/487 (9%)
Query: 307 PRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSP 366
PRGK +GGSS +N M+Y RG RD+D WA G GW + +V PYF ++E+ E
Sbjct: 79 PRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADVLPYFKRMEDNDGGEDGWRG 138
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTRNGKRV 425
H G + V K+ + AF+E+ + + T DYN + GF ++ T G+R
Sbjct: 139 H---GGPLHVQRGSRKNPLYGAFVEAGRQAGFELTDDYNGSKQE-GFGPMEQTISGGRRW 194
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ AY++P R N+ + + RV+I E+++A GVE + + ++V AR+E+I++A
Sbjct: 195 SAASAYLKPALKRKNVSL-VKGFARRVII--ENQRAIGVEIEAHKQIQVVKARREVIVAA 251
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNYN 544
+IN+P ILM SG+GP EHL I V D P VG NLQDH+ L +T+ N
Sbjct: 252 SSINSPKILMLSGIGPAEHLRENGIAVVADRPGVGRNLQDHME---LYIQQESTKPITLN 308
Query: 545 TML---AQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAAD 601
++L ++A + G+G+ E FV+++ D YPDI++ F ++ D
Sbjct: 309 SVLNPFSKALIGAQWLFFKSGLGAT-NHFEAAAFVRSRAGVD--YPDIQYHFIPAAVRYD 365
Query: 602 SGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGN 661
G + G QA+ + PM KSRG + L S +P P++ N
Sbjct: 366 -GKAAAKSHGF------QAH----------VGPM--RSKSRGSVTLRSPDPKAKPVIRFN 406
Query: 662 YFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACTARQ 720
Y D I++ + F G +++P +SDD R
Sbjct: 407 YMSHPDDWTEFRHCIRLTREIFGQSAFDAFRGQEISP-------GSHVQSDDDLDVFIRD 459
Query: 721 ITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 780
+ +H GTC+MG +D T+VVD E RV G+ LRVAD+S+ P + + AP M G
Sbjct: 460 HAESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIMTG 519
Query: 781 EKCADMI 787
EK +D I
Sbjct: 520 EKASDHI 526
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E FV+++ D YPDI++ F ++ D G + G QA+
Sbjct: 337 EAAAFVRSRAGVD--YPDIQYHFIPAAVRYD-GKAAAKSHGF------QAH--------- 378
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR 163
+ PM KSRG + L S +P P++ NY D I++ + F
Sbjct: 379 -VGPMR--SKSRGSVTLRSPDPKAKPVIRFNYMSHPDDWTEFRHCIRLTREIFGQSAFDA 435
Query: 164 I-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELR 222
G +++P +SDD R + +H GTC+MG +D T+VVD E R
Sbjct: 436 FRGQEISP-------GSHVQSDDDLDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPECR 488
Query: 223 VHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
V G+ LRVAD+S+ P + + AP M GEK +D I
Sbjct: 489 VIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEKASDHI 526
>sp|A9AMZ9|BETA_BURM1 Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=betA PE=3 SV=1
Length = 566
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 236/499 (47%), Gaps = 49/499 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WA G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHQGLENWTYLDCLPYFKKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP +V+A +++ + Y Q GF
Sbjct: 135 DIGP---NDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYPRTEDLNGYQQE----GF 187
Query: 413 SRIQAT-TRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGK 471
+ T T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ +
Sbjct: 188 GPMDRTVTPKGRRASTARGYLDQAKTRPNLEIVTHALADRILFDG--KRASGVTYLRGNE 245
Query: 472 KRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAG 530
+ AR+E+++ +GAI +P +L SGVGP L+ L I + DLP VG+NLQDH+ M
Sbjct: 246 RATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYI 305
Query: 531 LAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIE 590
L+ Q + + G G+G+ E GF++T+ + DP +P+I+
Sbjct: 306 QYECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQ 362
Query: 591 FIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSR 650
+ F + I N H Q + + + SRGR+ L SR
Sbjct: 363 YHFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSR 403
Query: 651 NPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFE 709
+P P + NY + D + I+ + R R G +LNP + +
Sbjct: 404 DPNAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNP-------GADLK 456
Query: 710 SDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIA 769
SD R T H S +C+MG D VVDNE RVHG++ LRV DAS+MPI+
Sbjct: 457 SDKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGLEGLRVVDASIMPIITT 514
Query: 770 AHPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 515 GNLNAPTIMIAEKIADKIR 533
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNP-- 451
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
+ +SD R T H S +C+MG D VVDNE RVHG++ LRV
Sbjct: 452 -----GADLKSDKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGLEGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 210 bits (534), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 163/498 (32%), Positives = 232/498 (46%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WA G W+Y + PYF K E
Sbjct: 75 MNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGLEDWAYLDCLPYFRKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ R RPNL I ++ R+L K+A GV F+ +
Sbjct: 191 DRT--VTPRGRRASTARGYLDQARARPNLEIVTHALADRILF--SGKRATGVTFLHGSAR 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP E L L I V DLP VG NLQDH+ M
Sbjct: 247 VTAHARREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 FECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLKSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP + +S
Sbjct: 405 PHAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRFRGRELNP-------GADLKS 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D+ R T H S +C+MG D VVDNE RVHGI LRV DAS+MPI+
Sbjct: 458 DNELDTFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGIDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADRIR 533
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLKSRDPHAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRFRGRELNP-- 451
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
+ +SD+ R T H S +C+MG D VVDNE RVHGI LRV
Sbjct: 452 -----GADLKSDNELDTFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGIDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADRIR 533
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 209 bits (533), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 242/492 (49%), Gaps = 45/492 (9%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N M+Y RG D++RW +G GW+Y +V PY+ ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V P K+ + AF+E+ K + T DYN + GF ++ TT
Sbjct: 133 ---EGWRGTDGPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDYNGSKQE-GFGLMEQTTW 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
G+R S+ AY+ P RPN+ + + +++I E+ +A GVE + G+ +V A +E
Sbjct: 189 RGRRWSAASAYLRPALKRPNVEL-IRCFARKIVI--ENGRATGVEIERGGRIEVVKANRE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP HL+ + I V+ D P VG+NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNLQDHMEFYFQQVSTKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + G+G I E F+++ PDI++ F +++
Sbjct: 306 LYSWLPWFWQGVAGAQWLFFKRGLG-ISNQFESCAFLRSAPGV--KQPDIQYHFLPVAIS 362
Query: 600 ADSGHTVRRGMGITDEC-YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + G YN L KSRG + L S +P P++
Sbjct: 363 YD-GKAAAKSHGFQVHVGYN-------------------LSKSRGNVSLRSSDPKADPVI 402
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL--NPVPLPGCK-QYEFESDDYWA 715
NY D W E + V L+R E F + L P PG K Q + E D +
Sbjct: 403 RFNYMSHPED-W---EKFRHCVRLTR-EIFGQKAFDLYRGPEIQPGEKVQTDEEIDGF-- 455
Query: 716 CTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAP 775
R+ + +H GTC+MG +D VVD E RV G+ LRVAD+S+ P + + AP
Sbjct: 456 --LREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAP 513
Query: 776 IYMIGEKCADMI 787
M GEK AD I
Sbjct: 514 SIMTGEKSADHI 525
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL-- 168
L KSRG + L S +P P++ NY D W E + V L+R E F + L
Sbjct: 382 LSKSRGNVSLRSSDPKADPVIRFNYMSHPED-W---EKFRHCVRLTR-EIFGQKAFDLYR 436
Query: 169 NPVPLPGCK-QYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIK 227
P PG K Q + E D + R+ + +H GTC+MG +D VVD E RV G+
Sbjct: 437 GPEIQPGEKVQTDEEIDGF----LREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVD 492
Query: 228 NLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
LRVAD+S+ P + + AP M GEK AD I
Sbjct: 493 GLRVADSSIFPHITYGNLNAPSIMTGEKSADHI 525
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 209 bits (532), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 158/490 (32%), Positives = 241/490 (49%), Gaps = 41/490 (8%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N M+Y RG D++RW +G GW+Y +V PYF ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V + + + AF+E+ K ++T DYN + GF ++ T
Sbjct: 133 ---EGWRGTDGPLHVQRGGFTNPLFQAFVEAGKQAGFETTEDYNGSKQE-GFGLMEQTIF 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
G+R S+ +AY++P R N+ I + R++I E +A GVE +NG+ +V A +E
Sbjct: 189 GGRRWSAANAYLKPALKRDNVKI-VYGLAQRIVI--EDGRATGVEIERNGRIEVVKANRE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP +HL+ + I V+ D P VG NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDHMEFYFQQVSTKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + GG+G+ E F+++ PDI++ F +++
Sbjct: 306 LYSWLPWFWQGVAGAQWLLSRGGLGA-SNQFEACAFLRSAPGL--KQPDIQYHFLPVAIS 362
Query: 600 ADSGHTVRRGMGITDEC-YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + G YN L KSRG + L S +P P+L
Sbjct: 363 YD-GKAAAKSHGFQVHVGYN-------------------LSKSRGSVSLRSADPKADPVL 402
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYE-FESDDYWACT 717
NY D W E + V L+R E F + S + P + E +SD+
Sbjct: 403 RFNYMSHAED-W---EKFRHCVRLTR-EIFGQ--SAFHDYRGPEIQPGEGVQSDEEIDAF 455
Query: 718 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIY 777
R+ + +H GTCRMG +D VVD + RV GI LRVAD+S+ P + + P
Sbjct: 456 LREHLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTYGNLNGPSI 515
Query: 778 MIGEKCADMI 787
M GEK AD I
Sbjct: 516 MTGEKAADHI 525
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 75/151 (49%), Gaps = 8/151 (5%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNP 170
L KSRG + L S +P P+L NY D W E + V L+R E F + S +
Sbjct: 382 LSKSRGSVSLRSADPKADPVLRFNYMSHAED-W---EKFRHCVRLTR-EIFGQ--SAFHD 434
Query: 171 VPLPGCKQYE-FESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNL 229
P + E +SD+ R+ + +H GTCRMG +D VVD + RV GI L
Sbjct: 435 YRGPEIQPGEGVQSDEEIDAFLREHLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGL 494
Query: 230 RVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RVAD+S+ P + + P M GEK AD I
Sbjct: 495 RVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 151/490 (30%), Positives = 239/490 (48%), Gaps = 41/490 (8%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N M+Y RG D++RW +G GW+Y +V PYF ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V ++ + AF+E+ K ++T DYN + GF ++ TT
Sbjct: 133 ---EGWRGTDGPLHVRRGDARNPLFHAFIEAGKQAGFEATEDYNGGKQE-GFGLMEQTTW 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
G+R S+ AY++P RPN+ + + +V+I E+ +A GVE + GK IV A E
Sbjct: 189 MGRRWSAATAYLKPALKRPNVEL-IRCFARKVVI--ENGRATGVEIERGGKIEIVKANSE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP +HL+ + I+V+ D P VG NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGQHLQEMGIEVKIDRPGVGANLQDHMEFYFQQTSLKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + G+G+ E F+++ PDI++ F +++
Sbjct: 306 LYSWLPWYMQGIVGAQWMFFKSGLGT-SNQFEACAFLRSAPGV--KQPDIQYHFLPVAIS 362
Query: 600 ADSGHTVRRGMGITDEC-YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + G YN L KSRG + L S +P P++
Sbjct: 363 YD-GKAAAKSHGFQAHVGYN-------------------LSKSRGAVTLRSSDPKADPVI 402
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACT 717
NY D +++ + + F G ++ P P + ++DD
Sbjct: 403 RFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDYRGPEIQPGP-------DVQTDDQIDAF 455
Query: 718 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIY 777
R+ + +H GTC+MG +D VVD + RV G++ LRVAD+S+ P L + P
Sbjct: 456 LREHLESAYHPCGTCKMGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGNLNGPSI 515
Query: 778 MIGEKCADMI 787
M GEK AD I
Sbjct: 516 MTGEKAADHI 525
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLN 169
L KSRG + L S +P P++ NY D +++ + + F G ++
Sbjct: 382 LSKSRGAVTLRSSDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDYRGPEIQ 441
Query: 170 PVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNL 229
P P + ++DD R+ + +H GTC+MG +D VVD + RV G++ L
Sbjct: 442 PGP-------DVQTDDQIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPDTRVIGVEGL 494
Query: 230 RVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RVAD+S+ P L + P M GEK AD I
Sbjct: 495 RVADSSIFPSLTYGNLNGPSIMTGEKAADHI 525
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 151/490 (30%), Positives = 238/490 (48%), Gaps = 41/490 (8%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N M+Y RG D++RW +G GW+Y +V PYF ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVLPYFKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V + + + AF+E+ K ++T DYN + GF ++ T
Sbjct: 133 ---EGWRGTDGPLHVQRGGFTNPLFRAFVEAGKQAGFETTEDYNGSKQE-GFGLMEQTIF 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
+G+R S+ +AY++P R N+ I + R++I E +A GVE + GK +V A +E
Sbjct: 189 SGRRWSAANAYLKPALKRKNVEI-IYGFAQRIVI--EDGRATGVEIERGGKIEVVKANRE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP EHL+ + I+V+ D P VG NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGEHLKEMGIEVKADRPGVGANLQDHMEFYFQQVSTKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + GG+G+ E F+++ PDI++ F +++
Sbjct: 306 LYSWLPWFWQGVAGAQWLLSKGGLGA-SNQFEACAFLRSAPGL--KQPDIQYHFLPVAIS 362
Query: 600 ADSGHTVRRGMGITDEC-YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + G YN L KSRG + L S +P P+L
Sbjct: 363 YD-GKAAAKSHGFQVHVGYN-------------------LSKSRGSVTLRSPDPKADPVL 402
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACT 717
NY D +++ L F G+++ P +SD+
Sbjct: 403 RFNYMSHAEDWEKFRHCVRLTRELFGQAAFDDYRGAEIQP-------GESVQSDEEIDAF 455
Query: 718 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIY 777
R+ + +H GTC+MG +D VVD + RV G++ LRVAD+S+ P + + P
Sbjct: 456 LREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYGNLNGPSI 515
Query: 778 MIGEKCADMI 787
M GEK AD I
Sbjct: 516 MTGEKAADHI 525
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLN 169
L KSRG + L S +P P+L NY D +++ L F G+++
Sbjct: 382 LSKSRGSVTLRSPDPKADPVLRFNYMSHAEDWEKFRHCVRLTRELFGQAAFDDYRGAEIQ 441
Query: 170 PVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNL 229
P +SD+ R+ + +H GTC+MG +D VVD + RV G++ L
Sbjct: 442 P-------GESVQSDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEAL 494
Query: 230 RVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RVAD+S+ P + + P M GEK AD I
Sbjct: 495 RVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q63KK7|BETA_BURPS Choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243)
GN=betA PE=3 SV=1
Length = 565
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 162/498 (32%), Positives = 231/498 (46%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WA W+Y + PYF K E
Sbjct: 75 MNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKALEDWAYLDCLPYFRKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ R RPNL I ++ R+L K+A GV F+ +
Sbjct: 191 DRT--VTPRGRRASTARGYLDQARARPNLEIVTHALADRILF--SGKRATGVTFLHGSAR 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP E L L I V DLP VG NLQDH+ M
Sbjct: 247 VTAHARREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 FECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLKSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP + +S
Sbjct: 405 PHAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRFRGRELNP-------GADLKS 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D+ R T H S +C+MG D VVDNE RVHGI LRV DAS+MPI+
Sbjct: 458 DNELDTFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGIDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADRIR 533
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLKSRDPHAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRFRGRELNP-- 451
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
+ +SD+ R T H S +C+MG D VVDNE RVHGI LRV
Sbjct: 452 -----GADLKSDNELDTFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGIDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADRIR 533
>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA
PE=3 SV=1
Length = 565
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 166/508 (32%), Positives = 259/508 (50%), Gaps = 65/508 (12%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG D+D WA + G W+Y + PYF K E
Sbjct: 74 MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTYLDCLPYFRKAETR 133
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 134 DIGP---NDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAG-YPRTEDLNGYQQEGFGPM 189
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEF-VKNGK 471
R T+NG+R S+ Y++ + RPNL I ++ RVL D K+A GV + V + +
Sbjct: 190 DR--TVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLFDG--KRAIGVTYLVGDSE 245
Query: 472 KRI-VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMA 529
+R+ ARKE+I+S+GAI +P +L SGVGPR LESL I V DLP VGENLQDH+
Sbjct: 246 ERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLE-- 303
Query: 530 GLAFTHNTTELFN-YNTML-----AQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTD 583
L + T+ + Y ++L A M+N G G+G+ E GF++T+ +
Sbjct: 304 -LYLQYACTQPVSLYPSLLWWNQPAIGAEWMFN---GTGIGA-SNQFEAGGFIRTR--PE 356
Query: 584 PSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRG 643
+P+I++ F ++ + + V+ +H Q + + + +RG
Sbjct: 357 FKWPNIQYHFLPVAINYNGSNGVK--------------EHGFQAHMGS-----MRSPARG 397
Query: 644 RILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNPVPL 700
RI + S++P + P + NY E D +GI++ + +P++ G +++P
Sbjct: 398 RIQVKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYR--GREISP--- 452
Query: 701 PGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVAD 760
+ ++D+ R+ T H S +C+MG D VVD E RVHG+K LRV D
Sbjct: 453 ----GADVQTDEQLDKFIREHAETAFHPSCSCKMGT--DDMAVVDGEGRVHGMKGLRVVD 506
Query: 761 ASVMPILIAAHPMAPIYMIGEKCADMIK 788
AS+MP++I + A MI EK +D I+
Sbjct: 507 ASIMPLIITGNLNATTIMIAEKISDKIR 534
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 14/151 (9%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNP 170
+RGRI + S++P + P + NY E D +GI++ + +P++ G +++P
Sbjct: 395 ARGRIQVKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYR--GREISP 452
Query: 171 VPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLR 230
+ ++D+ R+ T H S +C+MG D VVD E RVHG+K LR
Sbjct: 453 -------GADVQTDEQLDKFIREHAETAFHPSCSCKMGT--DDMAVVDGEGRVHGMKGLR 503
Query: 231 VADASVMPILIAAHPMAPIYMIGEKCADMIK 261
V DAS+MP++I + A MI EK +D I+
Sbjct: 504 VVDASIMPLIITGNLNATTIMIAEKISDKIR 534
>sp|Q13NG7|BETA_BURXL Choline dehydrogenase OS=Burkholderia xenovorans (strain LB400)
GN=betA PE=3 SV=1
Length = 561
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 162/499 (32%), Positives = 238/499 (47%), Gaps = 49/499 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WAA G W+Y + PYF K E
Sbjct: 75 MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDGWAAHAGLENWTYLDCLPYFRKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP + +V+A +++ Y Q GF
Sbjct: 135 DIGA---NAYHGGDGPVHVTTSKPGNNPLFAAMVEAGVQAGFPRTDDLNGYQQE----GF 187
Query: 413 SRIQAT-TRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGK 471
+ T T NG+R S+ Y++ + RPNL I ++ RVL K+A GV ++ +G
Sbjct: 188 GPMDRTVTANGRRASTARGYLDRAKARPNLTIVTHAVTDRVLF--SGKRAVGVSYLHHGN 245
Query: 472 KRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAG 530
AR+E+++ +GAI +P +L SGVG L L + + DLP VGENLQDH+ M
Sbjct: 246 VLNAQARREVLVCSGAIASPQLLQRSGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYI 305
Query: 531 LAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIE 590
L+ Q + + G G+G+ E GF++T+ + DP +P+I+
Sbjct: 306 QYECKEPVSLYPALQWWNQPAIGLEWMLNGTGIGA-SNQFEAGGFIRTR-DDDP-WPNIQ 362
Query: 591 FIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSR 650
+ F ++ + + +R H Q + + + SRGR+ L SR
Sbjct: 363 YHFLPVAINYNGSNAIR--------------MHGFQAHVGS-----MRSPSRGRVKLTSR 403
Query: 651 NPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFE 709
+P P + NY D D +GI++ + R R G +LNP E
Sbjct: 404 DPNAHPGILFNYMADPLDWREFRDGIRITREIMRQPALDRYRGRELNP-------GAELT 456
Query: 710 SDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIA 769
+D+ R T H S +C+MG D VVDNE RVHG++ LRV DAS+MP +
Sbjct: 457 TDEQLDSFVRMRAETAFHPSCSCKMGY--DDMAVVDNEGRVHGMQGLRVVDASIMPRITT 514
Query: 770 AHPMAPIYMIGEKCADMIK 788
+ AP M+ EK AD I+
Sbjct: 515 GNLNAPTIMLAEKIADRIR 533
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 103/219 (47%), Gaps = 31/219 (14%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E GF++T+ + DP +P+I++ F ++ + + +R H Q +
Sbjct: 345 EAGGFIRTR-DDDP-WPNIQYHFLPVAINYNGSNAIR--------------MHGFQAHVG 388
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR 163
+ + SRGR+ L SR+P P + NY D D +GI++ + R R
Sbjct: 389 S-----MRSPSRGRVKLTSRDPNAHPGILFNYMADPLDWREFRDGIRITREIMRQPALDR 443
Query: 164 I-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELR 222
G +LNP E +D+ R T H S +C+MG D VVDNE R
Sbjct: 444 YRGRELNP-------GAELTTDEQLDSFVRMRAETAFHPSCSCKMGY--DDMAVVDNEGR 494
Query: 223 VHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
VHG++ LRV DAS+MP + + AP M+ EK AD I+
Sbjct: 495 VHGMQGLRVVDASIMPRITTGNLNAPTIMLAEKIADRIR 533
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 162/502 (32%), Positives = 252/502 (50%), Gaps = 53/502 (10%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG D+D WA + G W+Y + PYF K E
Sbjct: 74 MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLQDWTYLDCLPYFRKAETR 133
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 134 DIGP---NDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAG-YPRTEDLNGYQQEGFGPM 189
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEF-VKNGK 471
R + T+NG+R S+ Y++ + RPNL I ++ RVL D K+A GV + V + +
Sbjct: 190 DR--SVTKNGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLFDG--KRAVGVTYLVGDSE 245
Query: 472 KRI-VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMA 529
+R+ ARKE+I+S+GAI +P +L SGVGPR LESL I V DLP VGENLQDH+ +
Sbjct: 246 ERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY 305
Query: 530 GLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDI 589
L+ Q + KG G+G+ E GF++T+ + +P+I
Sbjct: 306 LQYACTQPVSLYPSLLWWNQPAIGAEWMFKGTGIGA-SNQFEAGGFIRTR--PEFKWPNI 362
Query: 590 EFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGS 649
++ F ++ + + V+ +H Q + + + +RGRI S
Sbjct: 363 QYHFLPVAINYNGSNGVK--------------EHGFQAHMGS-----MRSPARGRIQAKS 403
Query: 650 RNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNPVPLPGCKQY 706
++P + P + NY E D +GI++ + +P++ G +++P
Sbjct: 404 KDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYR--GREISP-------GA 454
Query: 707 EFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPI 766
+ ++D+ R+ T H S +C+MG D VVD E RVHG+K LRV DAS+MP+
Sbjct: 455 DVQTDEQLDKFIREHAETAFHPSCSCKMGT--DDMAVVDGEGRVHGMKGLRVVDASIMPL 512
Query: 767 LIAAHPMAPIYMIGEKCADMIK 788
+I + A MI EK +D I+
Sbjct: 513 IITGNLNATTIMIAEKISDKIR 534
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNP 170
+RGRI S++P + P + NY E D +GI++ + +P++ G +++P
Sbjct: 395 ARGRIQAKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYR--GREISP 452
Query: 171 VPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLR 230
+ ++D+ R+ T H S +C+MG D VVD E RVHG+K LR
Sbjct: 453 -------GADVQTDEQLDKFIREHAETAFHPSCSCKMGT--DDMAVVDGEGRVHGMKGLR 503
Query: 231 VADASVMPILIAAHPMAPIYMIGEKCADMIK 261
V DAS+MP++I + A MI EK +D I+
Sbjct: 504 VVDASIMPLIITGNLNATTIMIAEKISDKIR 534
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 236/498 (47%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H +G V V G NP +VDA +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ ++
Sbjct: 191 DRT--VTPKGRRASTARGYLDQAKARPNLEIVTHALADRILFDG--KRASGVTYLRGSER 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP L++L I V DLP VG+NLQDH+ M
Sbjct: 247 ATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 YECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP CK +
Sbjct: 405 PNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPG--ADCK-----T 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D R T H S +C+MG D VVD E RVHG+ LRV DAS+MPI+
Sbjct: 458 DKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADKIR 533
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGA 453
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
CK +D R T H S +C+MG D VVD E RVHG+ LRV
Sbjct: 454 --DCK-----TDKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 162/498 (32%), Positives = 231/498 (46%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WA G W+Y + PYF K E
Sbjct: 75 MNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGLEDWAYLDCLPYFRKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ R RPNL I ++ R+L K+A GV F+ +
Sbjct: 191 DRT--VTPRGRRASTARGYLDQARARPNLEIVTHALADRILF--SGKRATGVTFLHGSAR 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP E L L I V DLP VG NLQDH+ M
Sbjct: 247 VTAHARREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 FECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + S GR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSCGRVKLKSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP + +S
Sbjct: 405 PHAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRFRGRELNP-------GADLKS 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D+ R T H S +C+MG D VVDNE RVHGI LRV DAS+MPI+
Sbjct: 458 DNELDTFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGIDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADRIR 533
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
S GR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SCGRVKLKSRDPHAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRFRGRELNP-- 451
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
+ +SD+ R T H S +C+MG D VVDNE RVHGI LRV
Sbjct: 452 -----GADLKSDNELDTFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGIDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADRIR 533
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 161/498 (32%), Positives = 235/498 (47%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H +G V V G NP +VDA +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ ++
Sbjct: 191 DR--TVTPKGRRASTARGYLDQAKVRPNLEIVTHALADRILFDG--KRASGVTYLRGSER 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP L+ L I V DLP VG+NLQDH+ M
Sbjct: 247 ATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 YECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP CK S
Sbjct: 405 PNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPG--ADCK-----S 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D R T H S +C+MG D VVD E RVHG+ LRV DAS+MPI+
Sbjct: 458 DKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADKIR 533
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGA 453
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
CK SD R T H S +C+MG D VVD E RVHG+ LRV
Sbjct: 454 --DCK-----SDKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 161/498 (32%), Positives = 235/498 (47%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H +G V V G NP +VDA +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ ++
Sbjct: 191 DR--TVTPKGRRASTARGYLDQAKVRPNLEIVTHALADRILFDG--KRASGVTYLRGSER 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP L+ L I V DLP VG+NLQDH+ M
Sbjct: 247 ATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 YECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP CK S
Sbjct: 405 PNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPG--ADCK-----S 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D R T H S +C+MG D VVD E RVHG+ LRV DAS+MPI+
Sbjct: 458 DKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADKIR 533
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGA 453
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
CK SD R T H S +C+MG D VVD E RVHG+ LRV
Sbjct: 454 --DCK-----SDKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 161/498 (32%), Positives = 235/498 (47%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H +G V V G NP +VDA +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ ++
Sbjct: 191 DR--TVTPKGRRASTARGYLDQAKVRPNLEIVTHALADRILFDG--KRASGVTYLRGSER 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP L+ L I V DLP VG+NLQDH+ M
Sbjct: 247 ATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 YECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP CK S
Sbjct: 405 PNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPG--ADCK-----S 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D R T H S +C+MG D VVD E RVHG+ LRV DAS+MPI+
Sbjct: 458 DKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADKIR 533
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGA 453
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
CK SD R T H S +C+MG D VVD E RVHG+ LRV
Sbjct: 454 --DCK-----SDKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 206 bits (525), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 233/498 (46%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP +VDA +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGNGPVSVTTSKPGVNPLFEAMVDAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ ++
Sbjct: 191 DR--TVTPKGRRASTARGYLDQAKVRPNLEIVTHALADRILFDG--KRASGVTYLRGSER 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP L+ L I V DLP VG+NLQDH+ M
Sbjct: 247 ATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ D +P+I++
Sbjct: 307 YECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR--DDDLWPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP CK S
Sbjct: 405 PNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPG--ADCK-----S 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D R T H S +C+MG D VVD E RVHG++ LRV DAS+MPI+
Sbjct: 458 DKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLEGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADKIR 533
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGA 453
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
CK SD R T H S +C+MG D VVD E RVHG++ LRV
Sbjct: 454 --DCK-----SDKELDAFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLEGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 206 bits (525), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 229/498 (45%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEDWTYLDCLPYFRKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ R RPNL I ++ R+L K+A GV F+ +
Sbjct: 191 DRT--VTPRGRRASTARGYLDQARARPNLEIVTHALADRILF--SGKRATGVTFLHGSAR 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP E L L I V DLP VG NLQDH+ M
Sbjct: 247 VTAHARREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ D +P+I++
Sbjct: 307 FECKEPVSLYPALKWWNQPKIGLDWMINGTGLGA-SNHFEAGGFIRTR--DDDLWPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLKSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R G +LNP + +S
Sbjct: 405 PNAHPSILFNYMAEALDWREFRDAIRATREIMHQPALDRFRGRELNP-------GADLKS 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D+ R T H S +C+MG D VVDNE RVHGI LRV DAS+MPI+
Sbjct: 458 DNELDAFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGIDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADKIR 533
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R G +LNP
Sbjct: 394 SRGRVKLKSRDPNAHPSILFNYMAEALDWREFRDAIRATREIMHQPALDRFRGRELNP-- 451
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
+ +SD+ R T H S +C+MG D VVDNE RVHGI LRV
Sbjct: 452 -----GADLKSDNELDAFVRARAETAFHPSCSCKMGY--DDMAVVDNEGRVHGIDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 206 bits (524), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 160/489 (32%), Positives = 234/489 (47%), Gaps = 45/489 (9%)
Query: 308 RGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENMTIPELRNSP 366
RGK +GGSS +N MIY RG P DY++WA G W Y PYF ++E T ++
Sbjct: 83 RGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMDSWDYAHCLPYFKRLEK-TFGATKDDQ 141
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTRNGKRV 425
G + + P + + AF ++ T D N GF + NG+RV
Sbjct: 142 FRGHHGPIKLRRGPADNPLFQAFFDAGVEAGYNKTPDVNGFRQE-GFGPFDSQVHNGRRV 200
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ AY+ P R NL + + VT+ ++ E K GV F KNG++ V A KE+ILS
Sbjct: 201 SASRAYLHPAMKRKNLEVQTRAFVTK--LNFEGNKVTGVTFKKNGREHTVNA-KEVILSG 257
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITM-AGLAFTHNTTELFNY 543
GAIN+P +L SG+G EHL SL I+ LP VGEN +DH+ + A + +
Sbjct: 258 GAINSPQLLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHLEVYVQHACKEPVSMQPSL 317
Query: 544 NTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSG 603
N + + + + G S EG GFV++ N D YP++ F F ++ D
Sbjct: 318 NKLKMPFIGLQWIFGRKGAAAS--NHFEGGGFVRS--NEDVDYPNLMFHFLPIAVRYDG- 372
Query: 604 HTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYF 663
T Y+ + PM SRG + + S++P P NY
Sbjct: 373 ---------TKAPAAHGYQ-------VHVGPM--YSNSRGHLKIKSKDPFVKPDFVFNYL 414
Query: 664 QDESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQ 720
E D VE IK+A N+ +P+ G +++P P E ++D+ ++
Sbjct: 415 STEEDKREWVEAIKVARNILGQKALDPYN--GGEISPGP-------EVQTDEEIIEWVKR 465
Query: 721 ITATVHHMSGTCRMGINEDGTTVVDNE-LRVHGIKNLRVADASVMPILIAAHPMAPIYMI 779
T H S +CRMG D +VVD E +VHG++NLRV DASVMP + +P+ M+
Sbjct: 466 DGETALHPSCSCRMGPASDEMSVVDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMM 525
Query: 780 GEKCADMIK 788
EK AD+I+
Sbjct: 526 AEKAADIIR 534
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 34/222 (15%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
EG GFV++ N D YP++ F F ++ D T Y+
Sbjct: 343 EGGGFVRS--NEDVDYPNLMFHFLPIAVRYDG----------TKAPAAHGYQ-------V 383
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEP 160
+ PM SRG + + S++P P NY E D VE IK+A N+ +P
Sbjct: 384 HVGPMY--SNSRGHLKIKSKDPFVKPDFVFNYLSTEEDKREWVEAIKVARNILGQKALDP 441
Query: 161 FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNE 220
+ G +++P P E ++D+ ++ T H S +CRMG D +VVD E
Sbjct: 442 YN--GGEISPGP-------EVQTDEEIIEWVKRDGETALHPSCSCRMGPASDEMSVVDPE 492
Query: 221 -LRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
+VHG++NLRV DASVMP + +P+ M+ EK AD+I+
Sbjct: 493 TFKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAEKAADIIR 534
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 154/490 (31%), Positives = 237/490 (48%), Gaps = 41/490 (8%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N ++Y RG D++RW +G GW+Y +V PYF ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V P + + AF+++ + T DYN + GF ++ T
Sbjct: 133 ---EGWRGTDGPLHVQRGPVSNPLFHAFIQAGAQAGFELTDDYNGSKQE-GFGLMEQTIH 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
NG+R S+ +AY++P R N+ + +N +V+I E+ +A GVE + G+ V A +E
Sbjct: 189 NGRRWSAANAYLKPALKRGNVTL-VNGFARKVII--ENGRAVGVEIERRGRVETVKANRE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP HL+ + I+V+ D P VG NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDHMEFYFQQVSTKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + GG+G+ E F+++ PDI++ F +++
Sbjct: 306 LYSWLPWFWQGVAGAQWLLSKGGLGA-SNQFEACAFLRSAPGL--KQPDIQYHFLPVAIS 362
Query: 600 ADSGHTVRRGMGITDEC-YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + G YN L KSRG + L S +P P++
Sbjct: 363 YD-GKAAAKSHGFQAHVGYN-------------------LSKSRGNVTLRSADPHDDPVI 402
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL-NPVPLPGCKQYEFESDDYWACT 717
NY D W E + V L+R Q+ P PG E+D+
Sbjct: 403 RFNYMSHPED-W---EKFRHCVRLTREIFGQKAFDDFRGPEIQPG---ENIETDEQIDAF 455
Query: 718 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIY 777
R+ + +H GTCRMG D VVD E RV G++ LRVAD+S+ P + + P
Sbjct: 456 LREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSI 515
Query: 778 MIGEKCADMI 787
M GEK AD I
Sbjct: 516 MTGEKAADHI 525
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL-N 169
L KSRG + L S +P P++ NY D W E + V L+R Q+
Sbjct: 382 LSKSRGNVTLRSADPHDDPVIRFNYMSHPED-W---EKFRHCVRLTREIFGQKAFDDFRG 437
Query: 170 PVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNL 229
P PG E+D+ R+ + +H GTCRMG D VVD E RV G++ L
Sbjct: 438 PEIQPG---ENIETDEQIDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGL 494
Query: 230 RVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RVAD+S+ P + + P M GEK AD I
Sbjct: 495 RVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q0B711|BETA_BURCM Choline dehydrogenase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=betA PE=3 SV=1
Length = 566
Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 235/498 (47%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP +VDA +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGNGPVSVTTSKPGANPLFEAMVDAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ ++
Sbjct: 191 DRT--VTPKGRRASTARGYLDQAKGRPNLEIVTHALADRILFDG--KRASGVTYLRGSER 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP L+ L I + DLP VG+NLQDH+ M
Sbjct: 247 ASAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 YECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP CK S
Sbjct: 405 PNAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPG--ADCK-----S 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D R T H S +C+MG D VVD E RVHG++ LRV DAS+MPI+
Sbjct: 458 DKELDTFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLEGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADKIR 533
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGA 453
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
CK SD R T H S +C+MG D VVD E RVHG++ LRV
Sbjct: 454 --DCK-----SDKELDTFVRARAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLEGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 158/492 (32%), Positives = 245/492 (49%), Gaps = 54/492 (10%)
Query: 308 RGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPH 367
+G+ +GG S +N ++TRG P D+DRWAA G GWS+ +V YF++ E + +
Sbjct: 80 QGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQKYFIRSEGNAV---FSGTW 136
Query: 368 HSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYL---GFSRIQATTRNGKR 424
H T G + V + AF++S + + + YN N G Q T RN +R
Sbjct: 137 HGTNGPLGVSNLAEPNPTSRAFVQSCQEMG---LPYNPDFNGASQEGAGIYQMTIRNNRR 193
Query: 425 VSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILS 484
S+ Y+ P R NL + + V +++ + +A GV+++ NG A +EI+++
Sbjct: 194 CSTAVGYLRPALGRKNLTVVTRALVLKIVFN--GTRATGVQYIANGTLNTAEASQEIVVT 251
Query: 485 AGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNY 543
AGAI TP ++M SGVGP HL I V +DLP VGENLQDH + +A Y
Sbjct: 252 AGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDHFGVDIVAELKTDESFDKY 311
Query: 544 NTMLAQAFT-MMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPS--YPDIEFIFAIGSLAA 600
+ + + Y + + G + S VEG F + +DPS PD++F F + A
Sbjct: 312 RKLHWMLWAGLEYTMFRSGPVAS--NVVEGGAF----WYSDPSSGVPDLQFHF-LAEAGA 364
Query: 601 DSGHT-VRRGM-GITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
++G T V +G GIT Y +L PKSRG + L S +P P++
Sbjct: 365 EAGVTSVPKGASGITLNSY------------------VLRPKSRGTVRLRSADPRVNPMV 406
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSK--LNPVPLPGCKQYEFESDDYWAC 716
N+ D +DL T EG++++ + ++ K P + Y DY
Sbjct: 407 DPNFLGDPADLETSAEGVRLSYEMFSQPSLEKHIRKTCFFSGKQPTMQMYR----DY--- 459
Query: 717 TARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPI 776
AR+ T +H + TC+MG D +VVD L+VHG++ +R+ D+SVMP L+ ++ A
Sbjct: 460 -AREHGRTSYHPTCTCKMG--RDDMSVVDPRLKVHGLEGIRICDSSVMPSLLGSNTNAAT 516
Query: 777 YMIGEKCADMIK 788
MI E+ AD I+
Sbjct: 517 IMISERAADFIQ 528
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 111/225 (49%), Gaps = 39/225 (17%)
Query: 43 VEGIGFVQTKYNTDPS--YPDIEFIFAIGSLAADSGHT-VRRGM-GITDECYNQAYKHLE 98
VEG F + +DPS PD++F F + A++G T V +G GIT Y
Sbjct: 337 VEGGAF----WYSDPSSGVPDLQFHF-LAEAGAEAGVTSVPKGASGITLNSY-------- 383
Query: 99 QKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT 158
+L PKSRG + L S +P P++ N+ D +DL T EG++++ +
Sbjct: 384 ----------VLRPKSRGTVRLRSADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQ 433
Query: 159 EPFQRIGSK--LNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTV 216
++ K P + Y DY AR+ T +H + TC+MG D +V
Sbjct: 434 PSLEKHIRKTCFFSGKQPTMQMYR----DY----AREHGRTSYHPTCTCKMG--RDDMSV 483
Query: 217 VDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
VD L+VHG++ +R+ D+SVMP L+ ++ A MI E+ AD I+
Sbjct: 484 VDPRLKVHGLEGIRICDSSVMPSLLGSNTNAATIMISERAADFIQ 528
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 206 bits (523), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 235/498 (47%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP +VDA +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGDGPVSVTTSKPGVNPLFEAMVDAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ ++
Sbjct: 191 DR--TVTPKGRRASTARGYLDQAKGRPNLEIVTHALADRILFDG--KRASGVTYLRGSER 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP L+ L I + DLP VG+NLQDH+ M
Sbjct: 247 ANAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 YECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP CK S
Sbjct: 405 PNAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPG--ADCK-----S 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D R T H S +C+MG D VVD E RVHG++ LRV DAS+MPI+
Sbjct: 458 DKELDTFVRSRAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLEGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADKIR 533
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGA 453
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
CK SD R T H S +C+MG D VVD E RVHG++ LRV
Sbjct: 454 --DCK-----SDKELDTFVRSRAETAFHPSCSCKMGY--DDMAVVDEEGRVHGLEGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADKIR 533
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 161/502 (32%), Positives = 250/502 (49%), Gaps = 53/502 (10%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG D+D WA + G W+Y + PYF K E
Sbjct: 74 MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTYLDCLPYFRKAETR 133
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 134 DIGP---NDYHGGDGPVSVATPKAGNNPLFHAMVEAGVQAG-YPRTEDLNGYQQEGFGPM 189
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEF-VKNGK 471
R + T+NG+R S+ Y++ + RPNL I ++ RVL D K+A GV + V + +
Sbjct: 190 DR--SVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLFDG--KRAVGVTYLVGDSE 245
Query: 472 KRI-VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMA 529
+R+ ARKE+I+S+GAI +P +L SGVGPR LESL I V DLP VGENLQDH+ +
Sbjct: 246 ERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY 305
Query: 530 GLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDI 589
L+ Q + G G+G+ E GF++T+ + +P+I
Sbjct: 306 LQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGA-SNQFEAGGFIRTR--PEFKWPNI 362
Query: 590 EFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGS 649
++ F ++ + + V+ +H Q + + + +RGRI S
Sbjct: 363 QYHFLPVAINYNGSNGVK--------------EHGFQAHMGS-----MRSPARGRIQAKS 403
Query: 650 RNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNPVPLPGCKQY 706
++P + P + NY E D +GI++ + +P++ G +++P
Sbjct: 404 KDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYR--GREISP-------GA 454
Query: 707 EFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPI 766
++D+ R+ T H S +C+MG D VVD E RVHG+K LRV DAS+MP+
Sbjct: 455 HVQTDEELDKFIREHAETAFHPSCSCKMGT--DDMAVVDGEGRVHGMKGLRVVDASIMPL 512
Query: 767 LIAAHPMAPIYMIGEKCADMIK 788
+I + A MI EK +D I+
Sbjct: 513 IITGNLNATTIMIAEKISDKIR 534
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNP 170
+RGRI S++P + P + NY E D +GI++ + +P++ G +++P
Sbjct: 395 ARGRIQAKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYR--GREISP 452
Query: 171 VPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLR 230
++D+ R+ T H S +C+MG D VVD E RVHG+K LR
Sbjct: 453 -------GAHVQTDEELDKFIREHAETAFHPSCSCKMGT--DDMAVVDGEGRVHGMKGLR 503
Query: 231 VADASVMPILIAAHPMAPIYMIGEKCADMIK 261
V DAS+MP++I + A MI EK +D I+
Sbjct: 504 VVDASIMPLIITGNLNATTIMIAEKISDKIR 534
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 236/498 (47%), Gaps = 49/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WAA G W+Y + PYF K E
Sbjct: 75 MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDGWAAHAGLENWTYLDCLPYFRKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP + +V+A +++ Y Q GF
Sbjct: 135 ---DAGANAYHGGDGPVHVTTSKPGNNPLFAAMVEAGVQAGFPRTDDLNGYQQE----GF 187
Query: 413 SRIQAT-TRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGK 471
+ T T NG+R S+ Y++ + RPNL I ++ RVL K+A GV ++ +G
Sbjct: 188 GPMDRTVTANGRRASTARGYLDRAKTRPNLTIVTHAVTDRVLF--SGKRAVGVAYLHHGN 245
Query: 472 KRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAG 530
AR+E+++ +GAI +P +L SGVG L L + + DLP VGENLQDH+ M
Sbjct: 246 AVNAQARREVLVCSGAIASPQLLQRSGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYI 305
Query: 531 LAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIE 590
L+ Q + + KG G+G+ E GF++T+ D +P+I+
Sbjct: 306 QYECKEPISLYPALQWWNQPAIGLEWMLKGTGIGA-SNQFEAGGFIRTR--DDDLWPNIQ 362
Query: 591 FIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSR 650
+ F ++ + + ++ H Q + + + SRGR+ L SR
Sbjct: 363 YHFLPVAINYNGSNAIK--------------MHGFQAHVGS-----MRSPSRGRVKLTSR 403
Query: 651 NPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFE 709
+P P + NY D D +GI++ + R R G +LNP E
Sbjct: 404 DPNAHPSILFNYMADPLDWREFRDGIRITREIMRQPALDRYRGRELNP-------GAELT 456
Query: 710 SDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIA 769
+D+ R T H S +C+MG D VVDNE RVHG++ LRV DAS+MP +
Sbjct: 457 TDEQLDTFVRMRAETAFHPSCSCKMGY--DDMAVVDNEGRVHGMEALRVVDASIMPRITT 514
Query: 770 AHPMAPIYMIGEKCADMI 787
+ AP M+ EK AD I
Sbjct: 515 GNLNAPTIMLAEKIADRI 532
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 106/230 (46%), Gaps = 32/230 (13%)
Query: 32 KGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYN 91
KG G+G+ E GF++T+ D +P+I++ F ++ + + ++
Sbjct: 334 KGTGIGA-SNQFEAGGFIRTR--DDDLWPNIQYHFLPVAINYNGSNAIK----------- 379
Query: 92 QAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKM 151
H Q + + + SRGR+ L SR+P P + NY D D +GI++
Sbjct: 380 ---MHGFQAHVGS-----MRSPSRGRVKLTSRDPNAHPSILFNYMADPLDWREFRDGIRI 431
Query: 152 AVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGIN 210
+ R R G +LNP E +D+ R T H S +C+MG
Sbjct: 432 TREIMRQPALDRYRGRELNP-------GAELTTDEQLDTFVRMRAETAFHPSCSCKMGY- 483
Query: 211 EDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
D VVDNE RVHG++ LRV DAS+MP + + AP M+ EK AD I
Sbjct: 484 -DDMAVVDNEGRVHGMEALRVVDASIMPRITTGNLNAPTIMLAEKIADRI 532
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/498 (31%), Positives = 234/498 (46%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD W+ G W+Y + PYF K E
Sbjct: 75 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHQGLERWTYLDCLPYFRKAETR 134
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
+ + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 135 DVGP---NDYHGGDGPVSVTTSKPGANPLFEAMVEAGVQAG-YPRTDDLNGYQQEGFGPM 190
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + RPNL I ++ R+L D K+A GV +++ ++
Sbjct: 191 DRT--VTPKGRRASTARGYLDQAKTRPNLEIVTHALADRILFDG--KRASGVAYLRGSER 246
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
AR+E+++ +GAI +P +L SGVGP L+ L I + DLP VG+NLQDH+ M
Sbjct: 247 ATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQ 306
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + + G G+G+ E GF++T+ + DP +P+I++
Sbjct: 307 YECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGA-SNHFEAGGFIRTR-DDDP-WPNIQY 363
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F + I N H Q + + + SRGR+ L SR+
Sbjct: 364 HFLP--------------VAINYNGSNAIEMHGFQAHVGS-----MRSPSRGRVKLRSRD 404
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P P + NY + D + I+ + R R G +LNP + S
Sbjct: 405 PNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNP-------GADCRS 457
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D R T H S +C+MG D VVD+E RVHG+ LRV DAS+MPI+
Sbjct: 458 DKELDTFVRARAETAFHPSCSCKMGY--DDMAVVDDEGRVHGLDGLRVVDASIMPIITTG 515
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP MI EK AD I+
Sbjct: 516 NLNAPTIMIAEKIADRIR 533
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGR+ L SR+P P + NY + D + I+ + R R G +LNP
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNP-- 451
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
+ SD R T H S +C+MG D VVD+E RVHG+ LRV
Sbjct: 452 -----GADCRSDKELDTFVRARAETAFHPSCSCKMGY--DDMAVVDDEGRVHGLDGLRVV 504
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIK 261
DAS+MPI+ + AP MI EK AD I+
Sbjct: 505 DASIMPIITTGNLNAPTIMIAEKIADRIR 533
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 154/490 (31%), Positives = 240/490 (48%), Gaps = 41/490 (8%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N M+Y RG D++RW +G GW+Y +V PYF ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V + + + AF+E+ K ++T DYN + GF ++ T
Sbjct: 133 ---EGWRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTEDYNGSKQE-GFGLMEQTIF 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
G+R S+ +AY++P R N+ I + R++I E+ +A GVE + G+ +V A +E
Sbjct: 189 AGRRWSAANAYLKPALKRDNVGI-VYGLARRIVI--ENGRATGVEIERGGRTEVVKANRE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP +HL+ + I+V+ D P VG NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPAKHLKEMGIEVKADRPGVGANLQDHMEFYFQQVSTKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + GG+G+ E F+++ PDI++ F +++
Sbjct: 306 LYSWLPWFWQGVAGAQWLLSKGGLGA-SNQFEACAFLRSAPGL--KQPDIQYHFLPVAIS 362
Query: 600 ADSGHTVRRGMGITDEC-YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + G YN L KSRG + L S +P P+L
Sbjct: 363 YD-GKAAAKSHGFQVHVGYN-------------------LSKSRGSVTLRSPDPKADPVL 402
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFESDDYWACT 717
NY D W E + V L+R Q+ + P PG +SD+
Sbjct: 403 RFNYMSHPED-W---EKFRHCVRLTREIFGQKAFDAYRGPEIQPGEG---VQSDEQIDSF 455
Query: 718 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIY 777
R+ + +H GTC+MG +D VVD + RV G+ LRVAD+S+ P + + P
Sbjct: 456 LREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSI 515
Query: 778 MIGEKCADMI 787
M GEK AD I
Sbjct: 516 MTGEKAADHI 525
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR-IGSKLN 169
L KSRG + L S +P P+L NY D W E + V L+R Q+ +
Sbjct: 382 LSKSRGSVTLRSPDPKADPVLRFNYMSHPED-W---EKFRHCVRLTREIFGQKAFDAYRG 437
Query: 170 PVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNL 229
P PG +SD+ R+ + +H GTC+MG +D VVD + RV G+ L
Sbjct: 438 PEIQPGEG---VQSDEQIDSFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGL 494
Query: 230 RVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RVAD+S+ P + + P M GEK AD I
Sbjct: 495 RVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 158/502 (31%), Positives = 246/502 (49%), Gaps = 53/502 (10%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WA + G W+Y + PYF K E
Sbjct: 74 MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDNWAKLPGLENWTYLDCLPYFRKAETR 133
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 134 DIGP---NDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAG-YPRTDDLNGYQQEGFGPM 189
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T+NG+R S+ Y++ + R L I ++ +VL E K+A GV ++ +
Sbjct: 190 DR--TVTKNGRRASTARGYLDTAKKRSTLTIVTHALTDKVLF--EGKRAVGVRYLIGAAE 245
Query: 473 RIV--FARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMA 529
V ARKE+++ +GAI +P +L SGVGP + LESL I V DLP VGENLQDH+ +
Sbjct: 246 ERVEARARKEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLELY 305
Query: 530 GLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDI 589
L+ Q + G G+G+ E GF++++ D +P+I
Sbjct: 306 LQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGA-SNQFEAGGFIRSRPEFD--WPNI 362
Query: 590 EFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGS 649
++ F ++ + + V+ +H Q + + + SRGR+ L S
Sbjct: 363 QYHFLPVAINYNGSNGVK--------------EHGFQAHMGS-----MRSPSRGRVQLKS 403
Query: 650 RNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT---EPFQRIGSKLNPVPLPGCKQY 706
+NP P + NY E D +GI++ + + +P++ G +++P
Sbjct: 404 KNPRDYPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPYR--GREISP-------GI 454
Query: 707 EFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPI 766
+ ++D+ R+ T H S +C+MG +E VVD E RVHG++ LRV DAS+MPI
Sbjct: 455 DVQTDEQLDKFIREHAETAFHPSCSCKMGTDE--MAVVDGEGRVHGMQGLRVVDASIMPI 512
Query: 767 LIAAHPMAPIYMIGEKCADMIK 788
+ + AP MI EK AD I+
Sbjct: 513 ITTGNLNAPTIMIAEKIADKIR 534
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 14/151 (9%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT---EPFQRIGSKLNP 170
SRGR+ L S+NP P + NY E D +GI++ + + +P++ G +++P
Sbjct: 395 SRGRVQLKSKNPRDYPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPYR--GREISP 452
Query: 171 VPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLR 230
+ ++D+ R+ T H S +C+MG +E VVD E RVHG++ LR
Sbjct: 453 -------GIDVQTDEQLDKFIREHAETAFHPSCSCKMGTDE--MAVVDGEGRVHGMQGLR 503
Query: 231 VADASVMPILIAAHPMAPIYMIGEKCADMIK 261
V DAS+MPI+ + AP MI EK AD I+
Sbjct: 504 VVDASIMPIITTGNLNAPTIMIAEKIADKIR 534
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 237/484 (48%), Gaps = 39/484 (8%)
Query: 307 PRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSP 366
PRGK +GGSS +N M+Y RG RDYD W+ G GW+Y +V PYF ++EN + +
Sbjct: 78 PRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYADVLPYFKRMENSSGGQ---EG 134
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTRNGKRV 425
T G + + + + AF+E+ + T DYN E GF ++ T NG+R
Sbjct: 135 WRGTNGPLYIQRGKRDNPLFHAFVEAGHEAGFEVTEDYNG-EKQEGFGPMEQTIHNGRRW 193
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ +AY++P RPN + L + R ++ E K+A GVE + AR+E+I++A
Sbjct: 194 SAANAYLKPALKRPN--VKLVKGLARKIV-LEGKRAVGVEIEAGRSFSTIRARREVIIAA 250
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNYN 544
+IN+P +LM SG+GP L+ I+V D P VG+NLQDH+ + L++
Sbjct: 251 SSINSPKLLMLSGIGPAAQLKEHGIEVVADRPGVGQNLQDHLEVYIQQECTQPITLYSKL 310
Query: 545 TMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGH 604
+ ++A + G G+ E F+++K + YPDI++ F ++ D G
Sbjct: 311 NLFSKAKIGAEWLFFKTGDGAT-NHFESAAFLRSKAGVE--YPDIQYHFLPVAIRYD-GK 366
Query: 605 TVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQ 664
+ G QA+ + PM KSRG + L S NP + P++ NY
Sbjct: 367 AAAQSHGF------QAH----------VGPM--RSKSRGSVTLRSANPREKPVIKFNYMS 408
Query: 665 DESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACTARQITA 723
E D +++ + F G+++ P +SDD ++
Sbjct: 409 HEDDWADFRHCVRLTREIFGQAAFNPYRGAEIQP-------GAHVQSDDEIDNFIKEHVE 461
Query: 724 TVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
+ H GTC+MG +D VVD E RV G++ LRVAD+S+ P + + P M+GEK
Sbjct: 462 SAFHPCGTCKMGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKA 521
Query: 784 ADMI 787
+D I
Sbjct: 522 SDHI 525
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E F+++K + YPDI++ F ++ D G + G QA+
Sbjct: 336 ESAAFLRSKAGVE--YPDIQYHFLPVAIRYD-GKAAAQSHGF------QAH--------- 377
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR 163
+ PM KSRG + L S NP + P++ NY E D +++ + F
Sbjct: 378 -VGPMR--SKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFNP 434
Query: 164 I-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELR 222
G+++ P +SDD ++ + H GTC+MG +D VVD E R
Sbjct: 435 YRGAEIQP-------GAHVQSDDEIDNFIKEHVESAFHPCGTCKMGAVDDPMAVVDAECR 487
Query: 223 VHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
V G++ LRVAD+S+ P + + P M+GEK +D I
Sbjct: 488 VIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 159/503 (31%), Positives = 246/503 (48%), Gaps = 55/503 (10%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WA + G W+Y + PYF K E
Sbjct: 74 MNGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWTYLDCLPYFRKAETR 133
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP +V+A +++ + Y Q GF
Sbjct: 134 DIGP---NDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQE----GF 186
Query: 413 SRIQAT-TRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGK 471
+ T T G+R S+ Y++ + R L I ++ ++L E K+A GV +++
Sbjct: 187 GPMDRTVTPKGRRASTARGYLDTAKKRSTLTIVTHALTDKILF--EGKRAVGVSYLQGST 244
Query: 472 KRIV--FARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITM 528
+ V ARKE+I+S+GAI +P +L SGVGPR LESL I V DLP VGENLQDH+ +
Sbjct: 245 EERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLEL 304
Query: 529 AGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPD 588
L+ Q + G G+G+ E GF++T+ + +P+
Sbjct: 305 YLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGA-SNQFEAGGFIRTREEFE--WPN 361
Query: 589 IEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLG 648
I++ F ++ + + V+ +H Q + + + SRGR+ L
Sbjct: 362 IQYHFLPVAINYNGSNGVK--------------EHGFQAHMGS-----MRSPSRGRVQLK 402
Query: 649 SRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT---EPFQRIGSKLNPVPLPGCKQ 705
S++P + P + NY E D +GI++ + + +PF+ G +++P
Sbjct: 403 SKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFR--GREISP-------G 453
Query: 706 YEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMP 765
E ++D+ R+ T H S +C+MG D VVD + RVHG++ LRV DAS+MP
Sbjct: 454 IEVQTDEQLDKFVREHAETAFHPSCSCKMGT--DDMAVVDGQGRVHGMQGLRVVDASIMP 511
Query: 766 ILIAAHPMAPIYMIGEKCADMIK 788
I+ + AP M+ EK AD I+
Sbjct: 512 IITTGNLNAPTIMMAEKIADKIR 534
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 14/151 (9%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRT---EPFQRIGSKLNP 170
SRGR+ L S++P + P + NY E D +GI++ + + +PF+ G +++P
Sbjct: 395 SRGRVQLKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFR--GREISP 452
Query: 171 VPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLR 230
E ++D+ R+ T H S +C+MG D VVD + RVHG++ LR
Sbjct: 453 -------GIEVQTDEQLDKFVREHAETAFHPSCSCKMGT--DDMAVVDGQGRVHGMQGLR 503
Query: 231 VADASVMPILIAAHPMAPIYMIGEKCADMIK 261
V DAS+MPI+ + AP M+ EK AD I+
Sbjct: 504 VVDASIMPIITTGNLNAPTIMMAEKIADKIR 534
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 202 bits (514), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 239/491 (48%), Gaps = 43/491 (8%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+R PRGK +GGSS +N M+Y RG D++RW +G GW+Y +V PYF ++E+ E
Sbjct: 73 RRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGGE 132
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTR 420
T G + V + + + AF+E+ K ++T DYN + GF ++ T
Sbjct: 133 ---EGWRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTDDYNGSKQE-GFGLMEQTIF 188
Query: 421 NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKE 480
+G+R S+ +AY++P R N+ + + +++I E +A GVE + GK +V A +E
Sbjct: 189 SGRRWSAANAYLKPALKRKNVGM-VYGLARKIVI--EDGRATGVEIERGGKVEVVKATRE 245
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTE 539
+I+SA + N+P +LM SG+GP +HL + I V+ D P VG NLQDH+ +
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGQHLNDMGIAVKADRPGVGANLQDHMEFYFQQVSTKPVS 305
Query: 540 LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLA 599
L+++ Q + GG+G+ E F+++ PDI++ F +++
Sbjct: 306 LYSWLPWFWQGVAGAQWLLSKGGLGA-SNQFEACAFLRSAPGL--KQPDIQYHFLPVAIS 362
Query: 600 ADSGHTVRRGMGITDEC-YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLL 658
D G + G YN L KSRG + L S +P P+L
Sbjct: 363 YD-GKAAAKSHGFQVHVGYN-------------------LSKSRGSVTLRSPDPKAEPVL 402
Query: 659 YGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIG--SKLNPVPLPGCKQYEFESDDYWAC 716
NY D W E + V L+R E F + + P PG +SD+
Sbjct: 403 RFNYMSHPED-W---EKFRHCVRLTR-EIFGQTAFDAYRGPEIQPGEG---VQSDEQIDA 454
Query: 717 TARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPI 776
R+ + +H GTC+MG +D VVD + RV G+ LRVAD+S+ P + + P
Sbjct: 455 FLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPS 514
Query: 777 YMIGEKCADMI 787
M GEK AD I
Sbjct: 515 IMTGEKAADHI 525
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 10/152 (6%)
Query: 111 LPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIG--SKL 168
L KSRG + L S +P P+L NY D W E + V L+R E F + +
Sbjct: 382 LSKSRGSVTLRSPDPKAEPVLRFNYMSHPED-W---EKFRHCVRLTR-EIFGQTAFDAYR 436
Query: 169 NPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKN 228
P PG +SD+ R+ + +H GTC+MG +D VVD + RV G+
Sbjct: 437 GPEIQPGEG---VQSDEQIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDG 493
Query: 229 LRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
LRVAD+S+ P + + P M GEK AD I
Sbjct: 494 LRVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/486 (31%), Positives = 238/486 (48%), Gaps = 43/486 (8%)
Query: 307 PRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSP 366
PRGK +GGSS +N M+Y RG D+D W+ G GW+Y +V PYF ++EN +
Sbjct: 78 PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMEN---SQGGQEG 134
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTRNGKRV 425
T G + V + + AF+E+ + T DYN E GF ++ T NG+R
Sbjct: 135 WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNG-EKQEGFGPMEQTIHNGRRW 193
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ +AY++P RPN+ + VL E K+A GVE + AR+E+I++A
Sbjct: 194 SAANAYLKPALKRPNVKLVKGFARKIVL---EGKRAVGVEIEAGRTFSTIRARREVIIAA 250
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNYN 544
+IN+P +LM SG+GP HL+ I + D P VG+NLQDH+ + L++
Sbjct: 251 SSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYSKL 310
Query: 545 TMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGH 604
+ ++A + + G G+ E FV++K + YPDI++ F ++ D G
Sbjct: 311 NLFSKARIGVEWLLFKTGDGAT-NHFESAAFVRSKAGVE--YPDIQYHFLPVAIRYD-GK 366
Query: 605 TVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQ 664
+ G QA+ + PM KSRG + L S NP + P++ NY
Sbjct: 367 AAAQSHGF------QAH----------VGPM--RSKSRGSVTLRSANPREKPVIKFNYMS 408
Query: 665 DESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQI 721
E D +++ + + +P++ G+++ P ++DD R+
Sbjct: 409 HEDDWADFRHCVRLTREIFGQAAFDPYR--GAEIQP-------GAHVQTDDEIDNFIREH 459
Query: 722 TATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGE 781
+ H GTC+MG +D VVD E RV G++ LRVAD+S+ P + + P M+GE
Sbjct: 460 VESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGE 519
Query: 782 KCADMI 787
K +D I
Sbjct: 520 KASDHI 525
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 33/220 (15%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E FV++K + YPDI++ F ++ D G + G QA+
Sbjct: 336 ESAAFVRSKAGVE--YPDIQYHFLPVAIRYD-GKAAAQSHGF------QAH--------- 377
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEP 160
+ PM KSRG + L S NP + P++ NY E D +++ + + +P
Sbjct: 378 -VGPMR--SKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDP 434
Query: 161 FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNE 220
++ G+++ P ++DD R+ + H GTC+MG +D VVD E
Sbjct: 435 YR--GAEIQP-------GAHVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPE 485
Query: 221 LRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RV G++ LRVAD+S+ P + + P M+GEK +D I
Sbjct: 486 CRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/486 (31%), Positives = 238/486 (48%), Gaps = 43/486 (8%)
Query: 307 PRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSP 366
PRGK +GGSS +N M+Y RG D+D W+ G GW+Y +V PYF ++EN +
Sbjct: 78 PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMEN---SQGGQEG 134
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTRNGKRV 425
T G + V + + AF+E+ + T DYN E GF ++ T NG+R
Sbjct: 135 WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNG-EKQEGFGPMEQTIHNGRRW 193
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ +AY++P RPN+ + VL E K+A GVE + AR+E+I++A
Sbjct: 194 SAANAYLKPALKRPNVKLVKGFARKIVL---EGKRAVGVEIEAGRTFSTIRARREVIIAA 250
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNYN 544
+IN+P +LM SG+GP HL+ I + D P VG+NLQDH+ + L++
Sbjct: 251 SSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYSKL 310
Query: 545 TMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGH 604
+ ++A + + G G+ E FV++K + YPDI++ F ++ D G
Sbjct: 311 NLFSKARIGVEWLLFKTGDGAT-NHFESAAFVRSKAGVE--YPDIQYHFLPVAIRYD-GK 366
Query: 605 TVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQ 664
+ G QA+ + PM KSRG + L S NP + P++ NY
Sbjct: 367 AAAQSHGF------QAH----------VGPM--RSKSRGSVTLRSANPREKPVIKFNYMS 408
Query: 665 DESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQI 721
E D +++ + + +P++ G+++ P ++DD R+
Sbjct: 409 HEDDWADFRHCVRLTREIFGQAAFDPYR--GAEIQP-------GAHVQTDDEIDNFIREH 459
Query: 722 TATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGE 781
+ H GTC+MG +D VVD E RV G++ LRVAD+S+ P + + P M+GE
Sbjct: 460 VESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGE 519
Query: 782 KCADMI 787
K +D I
Sbjct: 520 KASDHI 525
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 33/220 (15%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E FV++K + YPDI++ F ++ D G + G QA+
Sbjct: 336 ESAAFVRSKAGVE--YPDIQYHFLPVAIRYD-GKAAAQSHGF------QAH--------- 377
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEP 160
+ PM KSRG + L S NP + P++ NY E D +++ + + +P
Sbjct: 378 -VGPMR--SKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDP 434
Query: 161 FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNE 220
++ G+++ P ++DD R+ + H GTC+MG +D VVD E
Sbjct: 435 YR--GAEIQP-------GAHVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPE 485
Query: 221 LRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RV G++ LRVAD+S+ P + + P M+GEK +D I
Sbjct: 486 CRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/486 (31%), Positives = 238/486 (48%), Gaps = 43/486 (8%)
Query: 307 PRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSP 366
PRGK +GGSS +N M+Y RG D+D W+ G GW+Y +V PYF ++EN +
Sbjct: 78 PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMEN---SQGGQEG 134
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYNQPENYLGFSRIQATTRNGKRV 425
T G + V + + AF+E+ + T DYN E GF ++ T NG+R
Sbjct: 135 WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNG-EKQEGFGPMEQTIHNGRRW 193
Query: 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
S+ +AY++P RPN+ + VL E K+A GVE + AR+E+I++A
Sbjct: 194 SAANAYLKPALKRPNVKLVKGFARKIVL---EGKRAVGVEIEAGRTFSTIRARREVIIAA 250
Query: 486 GAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNYN 544
+IN+P +LM SG+GP HL+ I + D P VG+NLQDH+ + L++
Sbjct: 251 SSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYSEL 310
Query: 545 TMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGH 604
+ ++A + + G G+ E FV++K + YPDI++ F ++ D G
Sbjct: 311 NLFSKARIGVEWLLFKTGDGAT-NHFESAAFVRSKAGVE--YPDIQYHFLPVAIRYD-GK 366
Query: 605 TVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQ 664
+ G QA+ + PM KSRG + L S NP + P++ NY
Sbjct: 367 AAAQSHGF------QAH----------VGPM--RSKSRGSVTLRSANPREKPVIKFNYMS 408
Query: 665 DESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQI 721
E D +++ + + +P++ G+++ P ++DD R+
Sbjct: 409 HEDDWADFRHCVRLTREIFGQAAFDPYR--GAEIQP-------GAHVQTDDEIDNFIREH 459
Query: 722 TATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGE 781
+ H GTC+MG +D VVD E RV G++ LRVAD+S+ P + + P M+GE
Sbjct: 460 VESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGE 519
Query: 782 KCADMI 787
K +D I
Sbjct: 520 KASDHI 525
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 33/220 (15%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E FV++K + YPDI++ F ++ D G + G QA+
Sbjct: 336 ESAAFVRSKAGVE--YPDIQYHFLPVAIRYD-GKAAAQSHGF------QAH--------- 377
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEP 160
+ PM KSRG + L S NP + P++ NY E D +++ + + +P
Sbjct: 378 -VGPMR--SKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDP 434
Query: 161 FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNE 220
++ G+++ P ++DD R+ + H GTC+MG +D VVD E
Sbjct: 435 YR--GAEIQP-------GAHVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPE 485
Query: 221 LRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RV G++ LRVAD+S+ P + + P M+GEK +D I
Sbjct: 486 CRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/485 (30%), Positives = 234/485 (48%), Gaps = 41/485 (8%)
Query: 307 PRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSP 366
PRGK +GGSS +N M+Y RG D+D W+ G GW+Y +V PYF ++EN +
Sbjct: 78 PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMEN---SQGGQEG 134
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKRVS 426
T G + V + + AF+E+ D E GF ++ T NG+R S
Sbjct: 135 WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVADDYNGEKQEGFGPMEQTIHNGRRWS 194
Query: 427 SYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAG 486
+ +AY++P RPN+ + VL E K+A GVE + AR+E+I++A
Sbjct: 195 AANAYLKPALKRPNVKLVKGFARKIVL---EGKRAVGVEIEAGRTFSTIRARREVIIAAS 251
Query: 487 AINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNYNT 545
+IN+P +LM SG+GP HL+ I + D P VG+NLQDH+ + L++
Sbjct: 252 SINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYSELN 311
Query: 546 MLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHT 605
+ ++A + + G G+ E FV++K + YPDI++ F ++ D G
Sbjct: 312 LFSKARIGVEWLLFKTGDGAT-NHFESAAFVRSKAGVE--YPDIQYHFLPVAIRYD-GKA 367
Query: 606 VRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQD 665
+ G QA+ + PM KSRG + L S NP + P++ NY
Sbjct: 368 AAQSHGF------QAH----------VGPM--RSKSRGSVTLRSANPREKPVIKFNYMSH 409
Query: 666 ESDLWTLVEGIKMAVNL---SRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQIT 722
E D +++ + + +P++ G+++ P ++DD R+
Sbjct: 410 EDDWADFRHCVRLTREIFGQAAFDPYR--GAEIQP-------GAHVQTDDEIDNFIREHV 460
Query: 723 ATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEK 782
+ H GTC+MG +D VVD E RV G++ LRVAD+S+ P + + P M+GEK
Sbjct: 461 ESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEK 520
Query: 783 CADMI 787
+D I
Sbjct: 521 ASDHI 525
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 33/220 (15%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E FV++K + YPDI++ F ++ D G + G QA+
Sbjct: 336 ESAAFVRSKAGVE--YPDIQYHFLPVAIRYD-GKAAAQSHGF------QAH--------- 377
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNL---SRTEP 160
+ PM KSRG + L S NP + P++ NY E D +++ + + +P
Sbjct: 378 -VGPMR--SKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDP 434
Query: 161 FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNE 220
++ G+++ P ++DD R+ + H GTC+MG +D VVD E
Sbjct: 435 YR--GAEIQP-------GAHVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPE 485
Query: 221 LRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
RV G++ LRVAD+S+ P + + P M+GEK +D I
Sbjct: 486 CRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 158/501 (31%), Positives = 236/501 (47%), Gaps = 49/501 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWA-AMGNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG D+D WA A G W+Y + PYF K E+
Sbjct: 74 MNNRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYHDCLPYFRKAESR 133
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP +V+A +++ Y ++ Q E +
Sbjct: 134 DIGP---NDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAG-YPRTDDLNGYQQEGFGPM 189
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ R RPNL I ++ R+L D K+A GV ++
Sbjct: 190 DR--TVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILFD--GKRASGVSYLIGNAN 245
Query: 473 RI--VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMA 529
AR+E++L AGAI +P IL SGVGP L L I + +LP VG+NLQDH+ M
Sbjct: 246 DATEARARREVLLCAGAIASPQILQRSGVGPAALLRELDIALVHELPGVGQNLQDHLEMY 305
Query: 530 GLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDI 589
L+ +L Q + G G+G+ E GF++T+ + ++P+I
Sbjct: 306 LQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIGA-SNQFEAGGFIRTR--PEFAWPNI 362
Query: 590 EFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGS 649
+F F + I N +H Q + + + SRGRI L S
Sbjct: 363 QFHFLP--------------VAINYNGSNAVNEHGFQAHVGS-----MRSPSRGRIQLKS 403
Query: 650 RNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEF 708
++P + P + NY E D + I++ + G +++P +
Sbjct: 404 KDPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREISP-------GIDC 456
Query: 709 ESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILI 768
+SD R+ T H S +C+MG ED VVD + RVHG++ LRV DAS+MP +I
Sbjct: 457 QSDAELDAFIREHAETAFHPSCSCKMG--EDDMAVVDGQGRVHGVQGLRVVDASIMPEII 514
Query: 769 AAHPMAPIYMIGEKCADMIKD 789
+ A M+ EK AD I+D
Sbjct: 515 TGNLNATTIMMAEKIADRIRD 535
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 114 SRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVP 172
SRGRI L S++P + P + NY E D + I++ + G +++P
Sbjct: 395 SRGRIQLKSKDPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREISP-- 452
Query: 173 LPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVA 232
+ +SD R+ T H S +C+MG ED VVD + RVHG++ LRV
Sbjct: 453 -----GIDCQSDAELDAFIREHAETAFHPSCSCKMG--EDDMAVVDGQGRVHGVQGLRVV 505
Query: 233 DASVMPILIAAHPMAPIYMIGEKCADMIKD 262
DAS+MP +I + A M+ EK AD I+D
Sbjct: 506 DASIMPEIITGNLNATTIMMAEKIADRIRD 535
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 157/498 (31%), Positives = 236/498 (47%), Gaps = 47/498 (9%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENM 357
M +R RGKG+GGSS++N M Y RG DYD WA G W Y PYF K E
Sbjct: 76 MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDHWAKQPGLEEWDYLSCLPYFKKSETR 135
Query: 358 TIPELRNSPHHSTTGYVPV-----GYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGF 412
I + +H G V V G NP ++A ++ Y ++ Q E +
Sbjct: 136 DIGP---NDYHGGDGPVSVTTPKAGNNPLYRTFIEAGKQAG-YPETEDVNGYQQEGFGPM 191
Query: 413 SRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKK 472
R T G+R S+ Y++ + R NL I + VT V I+ E K+A GV + + G+
Sbjct: 192 DRF--VTPKGRRASTARGYLDTAKQRSNLTIETRA-VTDV-IEFEGKRAVGVRYEQKGQP 247
Query: 473 RIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGL 531
+ AR+E++L GAI +P IL SGVG E L+ L I V +LP VGENLQDH+ M
Sbjct: 248 KQARARREVLLCGGAIASPQILQRSGVGNPEWLKELGIPVVHELPGVGENLQDHLEMYIQ 307
Query: 532 AFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEF 591
L+ Q + KG G+G+ E GF++++ D +P++++
Sbjct: 308 YECKEPISLYPALKWYNQPKIGAEWLFKGTGVGA-SNQFESCGFIRSR--DDEEWPNLQY 364
Query: 592 IFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRN 651
F +++ + V+ H Q + + + +SRGRI L S++
Sbjct: 365 HFLPIAISYNGKSAVQ--------------AHGFQAHVGS-----MRSESRGRIRLTSKD 405
Query: 652 PLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFES 710
P AP + NY E D + I++ + F R G +++P P + +S
Sbjct: 406 PHAAPSILFNYMAKEKDWEEFRDAIRLTREIIAQPAFDRYRGREISPGP-------DVQS 458
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D+ +Q T +H G+CRMG E V D + RVHG++ LRV DAS+ P++
Sbjct: 459 DEELDNFVKQHAETAYHPCGSCRMG--EGDMAVTDAQGRVHGLEGLRVVDASLFPVIPTG 516
Query: 771 HPMAPIYMIGEKCADMIK 788
+ AP M+ EK AD I+
Sbjct: 517 NLNAPTIMLAEKIADRIR 534
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 32 KGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYN 91
KG G+G+ E GF++++ D +P++++ F +++ + V+
Sbjct: 335 KGTGVGA-SNQFESCGFIRSR--DDEEWPNLQYHFLPIAISYNGKSAVQ----------- 380
Query: 92 QAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKM 151
H Q + + + +SRGRI L S++P AP + NY E D + I++
Sbjct: 381 ---AHGFQAHVGS-----MRSESRGRIRLTSKDPHAAPSILFNYMAKEKDWEEFRDAIRL 432
Query: 152 AVNLSRTEPFQRI-GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGIN 210
+ F R G +++P P + +SD+ +Q T +H G+CRMG
Sbjct: 433 TREIIAQPAFDRYRGREISPGP-------DVQSDEELDNFVKQHAETAYHPCGSCRMG-- 483
Query: 211 EDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
E V D + RVHG++ LRV DAS+ P++ + AP M+ EK AD I+
Sbjct: 484 EGDMAVTDAQGRVHGLEGLRVVDASLFPVIPTGNLNAPTIMLAEKIADRIR 534
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,482,435
Number of Sequences: 539616
Number of extensions: 13891135
Number of successful extensions: 29571
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 28218
Number of HSP's gapped (non-prelim): 447
length of query: 801
length of database: 191,569,459
effective HSP length: 126
effective length of query: 675
effective length of database: 123,577,843
effective search space: 83415044025
effective search space used: 83415044025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)