Query psy14643
Match_columns 801
No_of_seqs 450 out of 3233
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 16:56:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 1E-100 3E-105 839.4 41.7 531 255-795 56-620 (623)
2 TIGR01810 betA choline dehydro 100.0 1.1E-80 2.5E-85 717.4 48.2 489 260-791 4-530 (532)
3 PRK02106 choline dehydrogenase 100.0 1.8E-80 3.9E-85 719.5 46.9 490 257-791 6-535 (560)
4 COG2303 BetA Choline dehydroge 100.0 1.7E-72 3.7E-77 642.8 33.7 490 256-790 7-536 (542)
5 PLN02785 Protein HOTHEAD 100.0 2.4E-68 5.2E-73 611.6 37.3 498 229-796 32-585 (587)
6 KOG1238|consensus 100.0 1.2E-51 2.5E-56 453.5 15.1 260 2-267 359-619 (623)
7 TIGR02462 pyranose_ox pyranose 100.0 2.6E-49 5.6E-54 444.6 29.3 415 306-791 111-543 (544)
8 PF00732 GMC_oxred_N: GMC oxid 100.0 7.6E-48 1.6E-52 413.2 11.7 261 258-527 2-296 (296)
9 TIGR01810 betA choline dehydro 100.0 2.8E-34 6.1E-39 331.6 16.5 211 25-264 320-530 (532)
10 PF05199 GMC_oxred_C: GMC oxid 100.0 1.6E-34 3.4E-39 275.3 8.3 143 112-256 1-144 (144)
11 PRK02106 choline dehydrogenase 100.0 3E-33 6.5E-38 324.8 17.9 209 25-264 327-535 (560)
12 PF05199 GMC_oxred_C: GMC oxid 100.0 4.4E-32 9.5E-37 258.4 13.8 143 639-783 1-144 (144)
13 PLN02785 Protein HOTHEAD 100.0 5.5E-32 1.2E-36 311.2 8.8 151 104-264 416-580 (587)
14 COG2303 BetA Choline dehydroge 100.0 4.4E-29 9.6E-34 285.7 8.1 204 26-263 332-536 (542)
15 TIGR02462 pyranose_ox pyranose 99.7 7.8E-18 1.7E-22 190.4 6.5 135 107-264 409-543 (544)
16 PRK12835 3-ketosteroid-delta-1 96.7 0.0036 7.9E-08 73.4 8.1 64 431-495 218-282 (584)
17 PRK12837 3-ketosteroid-delta-1 96.5 0.006 1.3E-07 70.6 8.3 64 430-495 178-242 (513)
18 PRK07843 3-ketosteroid-delta-1 96.2 0.011 2.3E-07 69.2 8.1 62 434-497 216-277 (557)
19 PRK12844 3-ketosteroid-delta-1 96.1 0.016 3.6E-07 67.6 8.4 60 434-495 216-275 (557)
20 TIGR01813 flavo_cyto_c flavocy 95.8 0.044 9.4E-07 62.3 10.5 58 432-491 136-194 (439)
21 PF01266 DAO: FAD dependent ox 95.5 0.027 5.8E-07 61.6 7.0 57 435-499 156-212 (358)
22 PRK06481 fumarate reductase fl 95.5 0.1 2.3E-06 60.3 12.1 57 436-495 200-258 (506)
23 PRK07121 hypothetical protein; 95.4 0.035 7.7E-07 64.0 7.9 61 434-495 185-245 (492)
24 PRK12845 3-ketosteroid-delta-1 95.2 0.041 8.8E-07 64.3 7.5 56 436-493 227-282 (564)
25 PRK06134 putative FAD-binding 94.7 0.079 1.7E-06 62.3 7.9 60 434-495 225-284 (581)
26 PRK12839 hypothetical protein; 94.6 0.071 1.5E-06 62.4 7.4 57 436-493 224-280 (572)
27 PRK12843 putative FAD-binding 94.5 0.084 1.8E-06 62.1 7.8 60 434-495 229-288 (578)
28 PF00890 FAD_binding_2: FAD bi 94.4 0.069 1.5E-06 60.2 6.3 56 436-495 151-208 (417)
29 PRK11101 glpA sn-glycerol-3-ph 94.1 0.33 7.2E-06 56.7 11.3 59 437-499 160-220 (546)
30 PRK08274 tricarballylate dehyd 94.0 0.11 2.4E-06 59.5 7.1 64 435-501 140-204 (466)
31 PRK06175 L-aspartate oxidase; 94.0 0.12 2.6E-06 58.5 7.1 57 431-490 134-190 (433)
32 PF06039 Mqo: Malate:quinone o 93.8 0.21 4.7E-06 55.1 8.2 68 431-500 187-254 (488)
33 PRK07395 L-aspartate oxidase; 93.3 0.13 2.8E-06 60.1 6.0 54 436-490 145-198 (553)
34 PRK12842 putative succinate de 93.2 0.22 4.8E-06 58.6 8.0 60 435-496 223-282 (574)
35 PRK13977 myosin-cross-reactive 93.0 0.19 4E-06 57.9 6.5 67 424-490 221-294 (576)
36 PLN02815 L-aspartate oxidase 92.5 0.22 4.7E-06 58.6 6.5 55 435-490 165-223 (594)
37 TIGR02734 crtI_fam phytoene de 92.4 8.2 0.00018 44.6 19.5 55 436-496 229-283 (502)
38 TIGR01816 sdhA_forward succina 92.1 0.36 7.8E-06 56.6 7.7 54 434-490 127-182 (565)
39 PRK05675 sdhA succinate dehydr 91.9 0.35 7.6E-06 56.7 7.3 53 436-490 136-190 (570)
40 TIGR01811 sdhA_Bsu succinate d 91.8 0.43 9.4E-06 56.3 7.9 51 438-490 145-197 (603)
41 PRK07573 sdhA succinate dehydr 91.5 0.35 7.5E-06 57.5 6.8 52 436-490 180-233 (640)
42 PRK09078 sdhA succinate dehydr 91.2 0.42 9E-06 56.5 6.9 53 436-490 159-213 (598)
43 PRK05945 sdhA succinate dehydr 91.1 1.2 2.5E-05 52.6 10.5 53 435-490 144-198 (575)
44 PRK12834 putative FAD-binding 91.1 0.56 1.2E-05 54.9 7.9 55 438-495 164-234 (549)
45 COG0579 Predicted dehydrogenas 90.9 0.65 1.4E-05 51.7 7.6 122 372-502 90-223 (429)
46 PRK08958 sdhA succinate dehydr 90.9 0.53 1.1E-05 55.5 7.4 53 436-490 153-207 (588)
47 PRK06263 sdhA succinate dehydr 90.7 0.47 1E-05 55.4 6.7 54 435-490 143-198 (543)
48 PRK06452 sdhA succinate dehydr 90.5 0.54 1.2E-05 55.2 7.0 50 437-489 147-198 (566)
49 PTZ00139 Succinate dehydrogena 90.4 0.53 1.1E-05 55.8 6.8 53 436-490 176-230 (617)
50 PRK07512 L-aspartate oxidase; 90.3 0.43 9.4E-06 55.3 5.9 53 435-490 146-198 (513)
51 PRK09077 L-aspartate oxidase; 90.3 0.56 1.2E-05 54.7 6.9 55 435-490 148-208 (536)
52 TIGR03377 glycerol3P_GlpA glyc 90.2 1.8 4E-05 50.2 11.1 60 436-499 138-199 (516)
53 PRK07803 sdhA succinate dehydr 89.9 0.75 1.6E-05 54.6 7.6 48 440-490 165-214 (626)
54 PLN00128 Succinate dehydrogena 89.7 0.66 1.4E-05 55.1 6.9 52 437-490 198-251 (635)
55 PTZ00306 NADH-dependent fumara 89.5 0.77 1.7E-05 58.6 7.7 54 438-492 559-623 (1167)
56 TIGR02485 CobZ_N-term precorri 89.4 0.77 1.7E-05 52.0 6.9 59 435-496 132-190 (432)
57 TIGR00551 nadB L-aspartate oxi 89.1 0.84 1.8E-05 52.6 7.1 51 437-490 140-190 (488)
58 PRK08626 fumarate reductase fl 89.1 0.69 1.5E-05 55.2 6.5 52 436-490 168-221 (657)
59 COG0029 NadB Aspartate oxidase 89.0 0.4 8.7E-06 53.2 4.0 59 429-489 137-196 (518)
60 PRK08275 putative oxidoreducta 89.0 0.77 1.7E-05 53.8 6.7 57 431-489 142-200 (554)
61 PRK09231 fumarate reductase fl 88.7 1 2.3E-05 53.0 7.6 53 435-490 143-197 (582)
62 TIGR01176 fum_red_Fp fumarate 88.6 1.1 2.4E-05 52.7 7.6 52 436-490 143-196 (580)
63 PRK12409 D-amino acid dehydrog 88.5 2.9 6.2E-05 46.9 10.7 57 435-496 206-264 (410)
64 KOG2404|consensus 87.8 0.51 1.1E-05 49.3 3.6 48 440-490 159-207 (477)
65 TIGR01812 sdhA_frdA_Gneg succi 87.8 0.99 2.1E-05 53.1 6.6 52 436-490 139-192 (566)
66 PRK08205 sdhA succinate dehydr 87.6 1.3 2.7E-05 52.3 7.3 56 434-490 148-207 (583)
67 PRK13339 malate:quinone oxidor 87.4 1.8 3.9E-05 49.6 8.2 68 429-500 188-257 (497)
68 PRK06854 adenylylsulfate reduc 87.2 1.3 2.8E-05 52.5 7.1 51 436-489 143-195 (608)
69 PRK06069 sdhA succinate dehydr 87.2 1.4 3E-05 52.0 7.3 52 436-490 148-201 (577)
70 PF13738 Pyr_redox_3: Pyridine 87.0 0.45 9.7E-06 47.4 2.7 62 430-498 86-147 (203)
71 PRK07057 sdhA succinate dehydr 86.8 1.4 3E-05 52.0 7.1 52 437-490 159-212 (591)
72 PRK05257 malate:quinone oxidor 86.4 2.1 4.7E-05 49.2 8.1 66 431-500 189-256 (494)
73 PRK08641 sdhA succinate dehydr 86.0 1.8 3.8E-05 51.1 7.4 50 439-490 150-201 (589)
74 TIGR01320 mal_quin_oxido malat 86.0 1.9 4.1E-05 49.5 7.5 60 437-500 189-250 (483)
75 TIGR02061 aprA adenosine phosp 85.9 1.5 3.3E-05 51.6 6.7 51 438-489 138-191 (614)
76 TIGR03378 glycerol3P_GlpB glyc 85.3 1.7 3.7E-05 48.4 6.3 58 436-497 273-330 (419)
77 TIGR02352 thiamin_ThiO glycine 84.4 2.9 6.3E-05 45.2 7.8 51 435-493 146-196 (337)
78 PRK08071 L-aspartate oxidase; 83.9 1.7 3.6E-05 50.4 5.8 49 439-490 142-191 (510)
79 PRK07804 L-aspartate oxidase; 83.8 2.1 4.5E-05 50.0 6.6 54 435-490 153-211 (541)
80 PLN02464 glycerol-3-phosphate 83.4 2 4.3E-05 51.1 6.2 61 436-498 242-304 (627)
81 PRK05329 anaerobic glycerol-3- 82.2 2.6 5.7E-05 47.3 6.3 59 431-493 264-322 (422)
82 PTZ00383 malate:quinone oxidor 81.6 3.2 6.9E-05 47.7 6.8 53 440-500 231-283 (497)
83 PRK13800 putative oxidoreducta 80.8 3.2 7E-05 51.6 7.0 50 438-490 155-206 (897)
84 COG0578 GlpA Glycerol-3-phosph 80.6 2.9 6.3E-05 47.8 5.9 88 420-515 161-253 (532)
85 COG1053 SdhA Succinate dehydro 80.0 3.7 8.1E-05 47.8 6.7 87 435-528 148-241 (562)
86 PF12831 FAD_oxidored: FAD dep 77.8 0.71 1.5E-05 52.2 0.0 63 431-499 95-157 (428)
87 PLN02661 Putative thiazole syn 77.4 3.9 8.5E-05 44.4 5.4 56 431-489 178-244 (357)
88 PF03486 HI0933_like: HI0933-l 76.1 4.4 9.6E-05 45.3 5.7 90 387-493 80-170 (409)
89 TIGR03862 flavo_PP4765 unchara 75.0 8.9 0.00019 42.3 7.5 89 387-493 57-145 (376)
90 PF01134 GIDA: Glucose inhibit 74.4 5.8 0.00013 43.8 5.9 48 435-489 105-152 (392)
91 PRK04176 ribulose-1,5-biphosph 74.2 4.2 9.2E-05 42.4 4.6 51 436-488 114-172 (257)
92 PRK06185 hypothetical protein; 73.6 8.9 0.00019 42.8 7.4 61 435-500 118-178 (407)
93 COG2081 Predicted flavoprotein 71.0 10 0.00022 41.5 6.5 90 386-493 81-171 (408)
94 TIGR03329 Phn_aa_oxid putative 70.1 2.9 6.4E-05 47.7 2.6 49 435-493 192-240 (460)
95 TIGR02730 carot_isom carotene 69.0 5.2 0.00011 46.1 4.3 55 435-495 238-292 (493)
96 TIGR02733 desat_CrtD C-3',4' d 66.8 6.7 0.00015 45.2 4.6 55 436-493 242-298 (492)
97 TIGR02732 zeta_caro_desat caro 65.7 7 0.00015 44.8 4.4 56 438-494 231-289 (474)
98 PRK00711 D-amino acid dehydrog 63.7 14 0.0003 41.5 6.3 53 435-495 210-262 (416)
99 PRK08401 L-aspartate oxidase; 63.3 37 0.0008 38.8 9.7 49 434-490 128-176 (466)
100 TIGR00292 thiazole biosynthesi 61.4 12 0.00026 38.9 4.9 66 431-497 105-179 (254)
101 TIGR01373 soxB sarcosine oxida 61.2 13 0.00029 41.5 5.6 57 435-498 192-248 (407)
102 COG3573 Predicted oxidoreducta 60.8 23 0.00049 37.6 6.5 82 431-515 158-259 (552)
103 KOG0042|consensus 60.3 5.1 0.00011 45.2 1.9 84 407-495 208-293 (680)
104 PRK10157 putative oxidoreducta 60.1 20 0.00044 40.4 6.8 64 427-499 109-172 (428)
105 PRK12266 glpD glycerol-3-phosp 59.2 18 0.00039 41.9 6.3 56 436-496 165-222 (508)
106 KOG2852|consensus 58.7 12 0.00025 39.1 3.9 73 431-511 153-226 (380)
107 PLN02487 zeta-carotene desatur 58.2 15 0.00032 43.0 5.4 57 437-494 306-365 (569)
108 PRK11728 hydroxyglutarate oxid 56.4 28 0.00061 38.7 7.1 56 435-499 158-213 (393)
109 PF13434 K_oxygenase: L-lysine 53.9 17 0.00038 39.6 4.8 61 430-493 99-161 (341)
110 TIGR02731 phytoene_desat phyto 52.7 13 0.00029 42.2 3.8 48 438-487 225-274 (453)
111 PRK15317 alkyl hydroperoxide r 51.9 36 0.00078 39.5 7.3 58 437-497 398-457 (517)
112 PRK13369 glycerol-3-phosphate 51.1 34 0.00073 39.6 6.8 55 436-495 165-220 (502)
113 TIGR01292 TRX_reduct thioredox 50.1 46 0.00099 35.0 7.3 57 437-497 188-246 (300)
114 COG1252 Ndh NADH dehydrogenase 48.8 15 0.00033 40.7 3.3 50 741-793 279-333 (405)
115 TIGR01377 soxA_mon sarcosine o 48.2 31 0.00068 37.9 5.8 55 435-498 154-208 (380)
116 PRK05192 tRNA uridine 5-carbox 46.9 27 0.00059 41.0 5.0 47 436-489 111-157 (618)
117 PRK12810 gltD glutamate syntha 45.9 36 0.00079 38.9 6.0 59 438-499 341-411 (471)
118 KOG4254|consensus 45.6 14 0.00031 40.9 2.3 56 434-495 272-327 (561)
119 TIGR01316 gltA glutamate synth 44.7 55 0.0012 37.2 7.1 61 437-499 320-397 (449)
120 PRK07208 hypothetical protein; 44.4 30 0.00066 39.6 5.1 54 438-493 230-284 (479)
121 PRK07364 2-octaprenyl-6-methox 44.1 49 0.0011 36.9 6.6 59 427-489 123-181 (415)
122 PLN02985 squalene monooxygenas 43.7 51 0.0011 38.2 6.7 60 429-492 151-211 (514)
123 PRK10262 thioredoxin reductase 43.5 92 0.002 33.4 8.4 62 434-499 193-257 (321)
124 PRK06126 hypothetical protein; 42.5 56 0.0012 38.1 7.0 49 436-488 137-187 (545)
125 PRK11259 solA N-methyltryptoph 42.5 45 0.00098 36.6 5.9 50 436-494 159-208 (376)
126 PRK12831 putative oxidoreducta 42.3 66 0.0014 36.8 7.3 57 437-495 329-402 (464)
127 TIGR00136 gidA glucose-inhibit 42.0 39 0.00084 39.7 5.3 54 436-495 107-160 (617)
128 TIGR02032 GG-red-SF geranylger 40.8 59 0.0013 34.0 6.3 52 431-488 96-147 (295)
129 PRK10015 oxidoreductase; Provi 40.6 42 0.0009 37.9 5.3 53 428-487 110-162 (429)
130 TIGR03197 MnmC_Cterm tRNA U-34 39.3 60 0.0013 35.9 6.3 50 435-493 144-193 (381)
131 PF13434 K_oxygenase: L-lysine 39.3 44 0.00094 36.5 5.0 47 437-486 290-338 (341)
132 TIGR03140 AhpF alkyl hydropero 38.9 72 0.0016 37.0 7.0 56 438-496 400-457 (515)
133 TIGR03169 Nterm_to_SelD pyridi 37.4 55 0.0012 35.8 5.6 53 742-794 260-313 (364)
134 COG1233 Phytoene dehydrogenase 37.4 32 0.0007 39.6 3.8 55 434-496 232-287 (487)
135 TIGR01318 gltD_gamma_fam gluta 35.9 77 0.0017 36.2 6.5 60 438-499 332-409 (467)
136 PLN02172 flavin-containing mon 35.0 45 0.00097 38.1 4.4 68 428-499 113-183 (461)
137 COG3486 IucD Lysine/ornithine 34.8 75 0.0016 35.0 5.7 54 438-494 290-346 (436)
138 PF06100 Strep_67kDa_ant: Stre 34.6 80 0.0017 35.9 6.1 63 427-489 205-274 (500)
139 PRK07818 dihydrolipoamide dehy 34.2 73 0.0016 36.3 6.1 56 434-493 221-277 (466)
140 PTZ00318 NADH dehydrogenase-li 34.1 66 0.0014 36.2 5.6 52 742-794 297-350 (424)
141 TIGR03364 HpnW_proposed FAD de 32.5 55 0.0012 35.8 4.5 43 438-493 158-200 (365)
142 PRK07233 hypothetical protein; 31.5 50 0.0011 37.0 4.1 51 437-494 209-259 (434)
143 PRK06416 dihydrolipoamide dehy 31.1 99 0.0021 35.2 6.5 56 435-494 222-277 (462)
144 TIGR01350 lipoamide_DH dihydro 31.0 92 0.002 35.4 6.2 53 435-492 220-272 (461)
145 KOG2495|consensus 30.6 45 0.00098 36.9 3.2 44 742-791 348-392 (491)
146 TIGR02053 MerA mercuric reduct 30.3 76 0.0016 36.2 5.3 55 434-492 215-269 (463)
147 COG0644 FixC Dehydrogenases (f 30.3 79 0.0017 35.2 5.4 51 431-487 100-150 (396)
148 PRK12769 putative oxidoreducta 30.2 81 0.0018 37.8 5.7 61 437-499 517-595 (654)
149 KOG2853|consensus 30.1 1E+02 0.0022 33.2 5.5 56 444-501 260-331 (509)
150 PRK06370 mercuric reductase; V 29.9 1E+02 0.0022 35.2 6.2 55 434-492 220-274 (463)
151 PRK07045 putative monooxygenas 29.9 1E+02 0.0023 34.0 6.3 59 426-490 107-165 (388)
152 COG0654 UbiH 2-polyprenyl-6-me 29.2 97 0.0021 34.3 5.8 57 428-491 107-163 (387)
153 COG0445 GidA Flavin-dependent 29.0 40 0.00086 38.6 2.6 72 435-512 110-193 (621)
154 COG3634 AhpF Alkyl hydroperoxi 28.8 1.3E+02 0.0028 32.5 6.1 60 435-497 399-460 (520)
155 PRK12809 putative oxidoreducta 28.6 1.1E+02 0.0023 36.7 6.3 51 438-490 501-568 (639)
156 PLN02612 phytoene desaturase 27.9 58 0.0012 38.3 3.9 44 438-486 320-363 (567)
157 PRK09564 coenzyme A disulfide 27.6 1.1E+02 0.0023 34.6 5.9 61 431-499 196-256 (444)
158 PF01494 FAD_binding_3: FAD bi 27.2 1.2E+02 0.0026 32.4 6.1 60 427-490 112-172 (356)
159 PRK04965 NADH:flavorubredoxin 26.7 1.4E+02 0.0029 33.0 6.4 60 434-500 191-250 (377)
160 PRK08243 4-hydroxybenzoate 3-m 26.2 1.3E+02 0.0029 33.2 6.3 49 437-490 114-163 (392)
161 TIGR01984 UbiH 2-polyprenyl-6- 26.1 1.3E+02 0.0029 32.9 6.2 57 424-487 104-160 (382)
162 PRK08244 hypothetical protein; 26.0 1.3E+02 0.0029 34.4 6.4 55 430-489 104-159 (493)
163 COG3075 GlpB Anaerobic glycero 25.8 47 0.001 35.5 2.2 53 435-491 267-319 (421)
164 TIGR02028 ChlP geranylgeranyl 25.7 1.3E+02 0.0027 33.6 5.9 60 426-487 93-158 (398)
165 PRK06327 dihydrolipoamide dehy 25.5 1.1E+02 0.0024 35.0 5.5 56 435-494 233-289 (475)
166 TIGR01372 soxA sarcosine oxida 25.0 1.4E+02 0.003 37.9 6.6 61 435-499 360-421 (985)
167 PRK06183 mhpA 3-(3-hydroxyphen 24.7 1.8E+02 0.004 33.8 7.3 55 437-495 125-180 (538)
168 PRK11445 putative oxidoreducta 24.4 2E+02 0.0043 31.3 7.1 56 430-490 103-158 (351)
169 PF07992 Pyr_redox_2: Pyridine 24.1 1.1E+02 0.0024 29.8 4.6 48 437-487 69-120 (201)
170 PRK11749 dihydropyrimidine deh 23.6 1.4E+02 0.0031 33.8 6.0 56 437-495 322-393 (457)
171 PRK12779 putative bifunctional 23.1 2.2E+02 0.0048 35.7 7.8 54 438-492 496-565 (944)
172 PRK12771 putative glutamate sy 22.4 2E+02 0.0043 33.8 7.0 59 438-499 317-391 (564)
173 TIGR00275 flavoprotein, HI0933 21.9 1.3E+02 0.0027 33.7 5.0 54 431-492 110-163 (400)
174 PRK09754 phenylpropionate diox 21.6 1.7E+02 0.0037 32.5 6.0 62 431-500 191-252 (396)
175 PRK14989 nitrite reductase sub 21.3 1.5E+02 0.0033 36.6 5.9 64 431-499 192-255 (847)
176 PRK12842 putative succinate de 21.3 1.8E+02 0.0038 34.3 6.3 66 725-795 501-571 (574)
177 PRK06184 hypothetical protein; 21.3 2E+02 0.0043 33.1 6.6 55 431-489 114-168 (502)
178 COG2072 TrkA Predicted flavopr 20.7 1.5E+02 0.0032 33.7 5.3 56 440-498 98-153 (443)
179 TIGR01988 Ubi-OHases Ubiquinon 20.1 2E+02 0.0044 31.4 6.1 57 424-487 105-161 (385)
180 PRK06115 dihydrolipoamide dehy 20.1 1.6E+02 0.0034 33.6 5.4 57 434-494 223-281 (466)
No 1
>KOG1238|consensus
Probab=100.00 E-value=1.3e-100 Score=839.44 Aligned_cols=531 Identities=46% Similarity=0.743 Sum_probs=479.9
Q ss_pred ccccccc-cccccCccccccccccCCCCC---------------------------ccCCcccccCcCcccccCCCeEEe
Q psy14643 255 KCADMIK-DTWSQGENKLYANVTPDGIRR---------------------------RADSIQAEKQPGQCQAMVKQRCRW 306 (801)
Q Consensus 255 ~~a~~i~-~~~~~g~~v~A~rLse~g~~~---------------------------~~~~y~~~~~~~~~~~~~~~~~~~ 306 (801)
...|+|+ ..++|| ||||+||||+++++ +.|.|.++|+..+|+.+.++.+.|
T Consensus 56 ~~yDyIVVGgGtAG-cvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~w 134 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAG-CVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCYW 134 (623)
T ss_pred cCCCEEEECCCchh-HHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCceec
Confidence 3456665 456888 99999999998876 246999999999999999999999
Q ss_pred cCCCccCchhHhcccEEecCChhhHHHHHHcCCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCcEeeecCCCCChHH
Q psy14643 307 PRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVV 386 (801)
Q Consensus 307 ~~g~~vGGsS~in~~~~~R~~~~df~~w~~~g~~~Ws~~~l~pyy~k~E~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 386 (801)
+|||+|||||++|+|+|.|+++.|||+|++.|+++|+|++++|||+|+|+...+.....++|+..|++.++...+.+++.
T Consensus 135 pRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~ 214 (623)
T KOG1238|consen 135 PRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLF 214 (623)
T ss_pred CccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCchh
Confidence 99999999999999999999999999999999999999999999999999988776667799999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCeechhhHHhhccccC-CCCeEEeeCceEEEEEeeCCCCeEEEEE
Q psy14643 387 DAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRN-RPNLHISLNSQVTRVLIDSESKKAYGVE 465 (801)
Q Consensus 387 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~-~~nl~v~~~a~V~rI~~d~~~~~a~gV~ 465 (801)
..|.++..++|.+..|+|| ....|+...+.+.++|.|+|+..+|+.|+.. |+||++..++.|+||.+|..++++.||+
T Consensus 215 ~~~~~ag~e~G~~~~D~nG-~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~ 293 (623)
T KOG1238|consen 215 TAFHRAGTEIGGSIFDRNG-ERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVE 293 (623)
T ss_pred hHhHHhHHhcCCCccCCCC-ccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEE
Confidence 9999999999988889999 9999999999999999999999999999987 8999999999999999998889999999
Q ss_pred EEEC-CEEEEEEeeeEEEecCCCCCCHHHHHhhCCCChhhhhhCCCceeecCC-cccccccccccceEEEEeCCccccch
Q psy14643 466 FVKN-GKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNY 543 (801)
Q Consensus 466 ~~~~-g~~~~v~A~k~VILaAGai~SprLLl~SGIG~~~~L~~~Gi~~v~~~p-VGrnl~dH~~~~~~~~~~~~~~~~~~ 543 (801)
+..+ ++.++++|+||||||||||+||||||+|||||+++|+++|||++.|+| ||+||+||+.. .+......+.....
T Consensus 294 ~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~-~~~~~~~~~~~~~~ 372 (623)
T KOG1238|consen 294 FVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMN-PGFVFSTNPVELSL 372 (623)
T ss_pred EEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCccccccccccccc-ceeeecCCCccccc
Confidence 9988 899999999999999999999999999999999999999999999999 99999999997 44444433433333
Q ss_pred hhHHH--HHHHHHhhccCCCCCCCCCccccEEEEEecCCCCC-CCCCCeeeeeeccccccCCccccccccCcchhhHhhh
Q psy14643 544 NTMLA--QAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTD-PSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQA 620 (801)
Q Consensus 544 ~~~~~--~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (801)
..+.. .+.+|+.. +.||+.... .+..+|.++..... .++||+++++.......+.+..+....+ ++++.+
T Consensus 373 ~~~~~~~~~~~yl~~---~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~---~~y~~~ 445 (623)
T KOG1238|consen 373 IRLVGITTVGQYLEG---GSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALG---EIYQAL 445 (623)
T ss_pred cccccchHHHHHHHc---CCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcc---hHHHHh
Confidence 22222 77888888 899998444 78999998877643 5799999999888877776555555444 666667
Q ss_pred hhccCCCCeEEEeeeecccCCCceEEecCCCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcCccccccccccCCCCC
Q psy14643 621 YKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPL 700 (801)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~g~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 700 (801)
+........+.++..+.+|.|+|+|.|.++||.+.|+|++||+.+|+|++.++++++.+.++.++.+|++++.++.....
T Consensus 446 ~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~ 525 (623)
T KOG1238|consen 446 FGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPV 525 (623)
T ss_pred hhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccC
Confidence 76666666788888889999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCcCcccccCcccCCCCCCCcccCCCCeeeccCCcEEeeccCCCCCCCCCChHHHHHHH
Q psy14643 701 PGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 780 (801)
Q Consensus 701 p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GT~rMG~~~d~~~VVD~~~rV~G~~NL~V~DaSvfP~~~~~NPtlTi~AlA 780 (801)
|+|+...+.+|++|+||+|....+.||++|||+||++.||++|||+++||||++||||+||||||.+|++||++|++|||
T Consensus 526 ~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIg 605 (623)
T KOG1238|consen 526 PGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIG 605 (623)
T ss_pred CCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHH
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCC
Q psy14643 781 EKCADMIKDTWSQGE 795 (801)
Q Consensus 781 ~R~Ad~I~~~~~~~~ 795 (801)
||+||+|++++...+
T Consensus 606 ek~ad~Ik~~~~~~~ 620 (623)
T KOG1238|consen 606 EKAADMIKEEWLANK 620 (623)
T ss_pred HHHHHHHHHHhhhcC
Confidence 999999999987654
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.1e-80 Score=717.40 Aligned_cols=489 Identities=33% Similarity=0.530 Sum_probs=394.7
Q ss_pred cccccccCccccccccccCCC-CCc------------------------------cCCcccccCcCcccccCCCeEEecC
Q psy14643 260 IKDTWSQGENKLYANVTPDGI-RRR------------------------------ADSIQAEKQPGQCQAMVKQRCRWPR 308 (801)
Q Consensus 260 i~~~~~~g~~v~A~rLse~g~-~~~------------------------------~~~y~~~~~~~~~~~~~~~~~~~~~ 308 (801)
|+..+++| ||+|+||||+|+ +|+ .|.|.++|+.+ +.++.+.|++
T Consensus 4 IVG~G~aG-~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~ 78 (532)
T TIGR01810 4 IIGGGSAG-SVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGHAR 78 (532)
T ss_pred EECCCchH-HHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEeeec
Confidence 45566777 999999999985 441 12344556655 6788999999
Q ss_pred CCccCchhHhcccEEecCChhhHHHHHH-cCCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCcEeeecCCCCChHHH
Q psy14643 309 GKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVVD 387 (801)
Q Consensus 309 g~~vGGsS~in~~~~~R~~~~df~~w~~-~g~~~Ws~~~l~pyy~k~E~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 387 (801)
||+|||||.||+|+|+|+++.||+.|+. .|.++|+|++|+|||+|+|+.++. ..+.|+..|++.+..++...+..+
T Consensus 79 g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~~~~ 155 (532)
T TIGR01810 79 GKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNPLFQ 155 (532)
T ss_pred ccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCCHHHH
Confidence 9999999999999999999999999998 588999999999999999998763 236799999999998887888899
Q ss_pred HHHHHHHHcCCCC-CCCCCCCCcccceeecccccCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEE
Q psy14643 388 AFLESSKYVNQST-IDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEF 466 (801)
Q Consensus 388 ~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~ 466 (801)
.|.++++++|++. .+.++ ....|++.|...|.+|+|+|+..+||.++.+++|++|+++++|+||++++ ++|+||++
T Consensus 156 ~~~~a~~~~G~~~~~~~~~-~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~--~ra~GV~~ 232 (532)
T TIGR01810 156 AFIEAGVEAGYNKTPDVNG-FRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEG--NRATGVEF 232 (532)
T ss_pred HHHHHHHHcCCCccCCCCC-CCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecC--CeEEEEEE
Confidence 9999999999987 46777 67788999888999999999999999988889999999999999999974 78999999
Q ss_pred EECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCCChhhhhhCCCceeecCC-cccccccccccceEEEEeCCccccch--
Q psy14643 467 VKNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTELFNY-- 543 (801)
Q Consensus 467 ~~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG~~~~L~~~Gi~~v~~~p-VGrnl~dH~~~~~~~~~~~~~~~~~~-- 543 (801)
...+...++.++|+||||||||+||+|||+|||||+++|+++||++++|+| ||+|||||+.. .+.+.+++......
T Consensus 233 ~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~~~~~~ 311 (532)
T TIGR01810 233 KKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPVSLYPSL 311 (532)
T ss_pred EeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCccccccc
Confidence 866555566666899999999999999999999999999999999999999 99999999986 77777765432111
Q ss_pred hhHH--HHHHHHHhhccCCCCCCCCCccccEEEEEecCCCCCCCCCCeeeeeeccccccCCccccccccCcchhhHhhhh
Q psy14643 544 NTML--AQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAY 621 (801)
Q Consensus 544 ~~~~--~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (801)
..+. ....+|+.. +.|++. .......+|.+.... ...|++++.+.+....... .
T Consensus 312 ~~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~-~----------------- 367 (532)
T TIGR01810 312 NWLKQPFIGAQWLFG---RKGAGA-SNHFEGGGFVRSNDD--VDYPNIQYHFLPVAIRYDG-T----------------- 367 (532)
T ss_pred chhhhhHHHHHHHhc---CCCCcc-ccccceeEEEecCCC--CCCCCeEEEEEeeeeccCC-C-----------------
Confidence 0001 123356655 667765 334445566654321 2346666554332110000 0
Q ss_pred hccCCCCeEEEeeeecccCCCceEEecCCCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcCccccccccccCCCCCC
Q psy14643 622 KHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLP 701 (801)
Q Consensus 622 ~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~g~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p 701 (801)
.......+.+...+.+|.|||+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++++.++..+... +..|
T Consensus 368 -~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~p 443 (532)
T TIGR01810 368 -KAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGG---EISP 443 (532)
T ss_pred -CCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccc---ccCC
Confidence 000012245555678999999999999999999999999999999999999999999999998877765322 2223
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcCcccccCcccCCCCCCCcccCCCCeeeccCCcEEeeccCCCCCCCCCChHHHHHHHH
Q psy14643 702 GCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGE 781 (801)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~GT~rMG~~~d~~~VVD~~~rV~G~~NL~V~DaSvfP~~~~~NPtlTi~AlA~ 781 (801)
+. ...+|++|++|+|....+.+|++||||||++++++||||++|||||++||||+|+||||+++++||++|+|||||
T Consensus 444 ~~---~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiae 520 (532)
T TIGR01810 444 GP---EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGE 520 (532)
T ss_pred CC---CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHH
Confidence 32 257899999999999999999999999997445579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy14643 782 KCADMIKDTW 791 (801)
Q Consensus 782 R~Ad~I~~~~ 791 (801)
|+||+|+++.
T Consensus 521 raAd~I~~~~ 530 (532)
T TIGR01810 521 KAADIIRGKK 530 (532)
T ss_pred HHHHHHhccC
Confidence 9999999753
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.8e-80 Score=719.47 Aligned_cols=490 Identities=33% Similarity=0.525 Sum_probs=393.8
Q ss_pred ccccccc-cccCcccccccccc-CCCCCc------------------------------cCCcccccCcCcccccCCCeE
Q psy14643 257 ADMIKDT-WSQGENKLYANVTP-DGIRRR------------------------------ADSIQAEKQPGQCQAMVKQRC 304 (801)
Q Consensus 257 a~~i~~~-~~~g~~v~A~rLse-~g~~~~------------------------------~~~y~~~~~~~~~~~~~~~~~ 304 (801)
.|+|+.+ +++| ||+|.|||| .+.+|+ .|.|.+.|+.+ ..++.+
T Consensus 6 ~D~iIVG~G~aG-~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~ 80 (560)
T PRK02106 6 YDYIIIGAGSAG-CVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRRM 80 (560)
T ss_pred CcEEEECCcHHH-HHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCee
Confidence 5666554 5666 999999999 566661 01234445544 567889
Q ss_pred EecCCCccCchhHhcccEEecCChhhHHHHHHc-CCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCcEeeecC-CCC
Q psy14643 305 RWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTTGYVPVGYN-PYK 382 (801)
Q Consensus 305 ~~~~g~~vGGsS~in~~~~~R~~~~df~~w~~~-g~~~Ws~~~l~pyy~k~E~~~~~~~~~~~~~g~~g~~~~~~~-~~~ 382 (801)
.+.+||+|||||.||+|+|+|+++.||+.|+.. |+++|+|++|+|||+|+|+++.. ....|+..||+++..+ .+.
T Consensus 81 ~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~---~~~~~g~~gp~~~~~~~~~~ 157 (560)
T PRK02106 81 ECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG---EDDYRGGDGPLSVTRGKPGT 157 (560)
T ss_pred ecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC---CccccCCCCCEEEeCCCCCC
Confidence 999999999999999999999999999999987 88999999999999999998732 3456888999998866 566
Q ss_pred ChHHHHHHHHHHHcCCCC-CCCCCCCCcccceeecccccCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeE
Q psy14643 383 SQVVDAFLESSKYVNQST-IDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKA 461 (801)
Q Consensus 383 ~~~~~~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a 461 (801)
.+..+.|.++++++|++. .++++ +.+.|++.|..+|.+|+|+|+..+||.++.+++|++|+++++|+||++++ ++|
T Consensus 158 ~~~~~~~~~a~~~lG~~~~~~~~~-~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~--~~a 234 (560)
T PRK02106 158 NPLFQAFVEAGVQAGYPRTDDLNG-YQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG--KRA 234 (560)
T ss_pred CHHHHHHHHHHHHcCCCcCCCCCC-CCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeC--CeE
Confidence 788999999999999997 47777 77889999988999999999999999998889999999999999999984 789
Q ss_pred EEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCCChhhhhhCCCceeecCC-cccccccccccceEEEEeCCccc
Q psy14643 462 YGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTEL 540 (801)
Q Consensus 462 ~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG~~~~L~~~Gi~~v~~~p-VGrnl~dH~~~~~~~~~~~~~~~ 540 (801)
+||++...+..+++.++|+||||||||+||+|||+|||||+++|+++||++++|+| ||||||||+.. .+.+.++++..
T Consensus 235 ~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~~~ 313 (560)
T PRK02106 235 VGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQPVS 313 (560)
T ss_pred EEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCCcc
Confidence 99999865555555566899999999999999999999999999999999999999 99999999996 77777766532
Q ss_pred cch--hhHHH--HHHHHHhhccCCCCCCCCCccccEEEEEecCCCCCCCCCCeeeeeeccccccCCccccccccCcchhh
Q psy14643 541 FNY--NTMLA--QAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDEC 616 (801)
Q Consensus 541 ~~~--~~~~~--~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (801)
... ..+.. ...+|+.. +.|++. .......+|.+.... ...|+++..+.+....... .
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~-~------------ 374 (560)
T PRK02106 314 LYPALKWWNKPKIGAEWLFT---GTGLGA-SNHFEAGGFIRSRAG--VDWPNIQYHFLPVAIRYDG-S------------ 374 (560)
T ss_pred cccccchhhhhHHHHHHHhc---CCCCcc-ccccceeeEEecCCC--CCCCCeEEEEeeccccccC-C------------
Confidence 211 11111 23466655 677765 333444556553221 1346665543322111000 0
Q ss_pred HhhhhhccCCCCeEEEeeeecccCCCceEEecCCCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcCccccccccccC
Q psy14643 617 YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLN 696 (801)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~g~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 696 (801)
.......+++...+.+|.++|+|+|+++|+++.|+|+++|+.++.|++.+.++++.+++++++.+++.+....
T Consensus 375 ------~~~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~- 447 (560)
T PRK02106 375 ------NAVKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE- 447 (560)
T ss_pred ------CCCCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc-
Confidence 0001123555566789999999999999999999999999999999999999999999999988877654322
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhCCcCcccccCcccCCCCCCCcccCCCCeeeccCCcEEeeccCCCCCCCCCChHHH
Q psy14643 697 PVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPI 776 (801)
Q Consensus 697 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GT~rMG~~~d~~~VVD~~~rV~G~~NL~V~DaSvfP~~~~~NPtlTi 776 (801)
..|+. ...+++++++|++....+++|++||||||+ |++||||++|||||++||||+|+||||+++++||++||
T Consensus 448 --~~p~~---~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti 520 (560)
T PRK02106 448 --ISPGA---DVQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPT 520 (560)
T ss_pred --cCCCc---ccCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHH
Confidence 23432 246889999999999989999999999995 55799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy14643 777 YMIGEKCADMIKDTW 791 (801)
Q Consensus 777 ~AlA~R~Ad~I~~~~ 791 (801)
||||||+||+|++++
T Consensus 521 ~aiaeraAd~I~~~~ 535 (560)
T PRK02106 521 IMIAEKAADLIRGRT 535 (560)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999876
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-72 Score=642.81 Aligned_cols=490 Identities=33% Similarity=0.523 Sum_probs=395.0
Q ss_pred ccccccc-ccccCccccccccccCCCCC----------------------------ccCCcccccCcCcccccCCCeEEe
Q psy14643 256 CADMIKD-TWSQGENKLYANVTPDGIRR----------------------------RADSIQAEKQPGQCQAMVKQRCRW 306 (801)
Q Consensus 256 ~a~~i~~-~~~~g~~v~A~rLse~g~~~----------------------------~~~~y~~~~~~~~~~~~~~~~~~~ 306 (801)
-+|+|+. .+.+| |++|+|||+.+.+| ..|.|.++++.+ +.++.+.|
T Consensus 7 ~~D~vIVGsG~aG-~~lA~rLs~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r~~~~ 81 (542)
T COG2303 7 EYDYVIVGSGSAG-SVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGRELAW 81 (542)
T ss_pred CCCEEEECCCchh-HHHHHHhcCCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCccccc
Confidence 3565554 45666 99999999777666 124777888876 89999999
Q ss_pred cCCCccCchhHhcccEEecCChhhHHHHHHc-CCCCCCccchHHHHHHhhcCCCCCCCC-CCCCCCCCcEeeecCCCCCh
Q psy14643 307 PRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIPELRN-SPHHSTTGYVPVGYNPYKSQ 384 (801)
Q Consensus 307 ~~g~~vGGsS~in~~~~~R~~~~df~~w~~~-g~~~Ws~~~l~pyy~k~E~~~~~~~~~-~~~~g~~g~~~~~~~~~~~~ 384 (801)
+||++|||||.||+|+|+|+++.||+.|... |.++|.|+||+|||+++|++.+....+ ...|+..||+.+..+....+
T Consensus 82 ~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~ 161 (542)
T COG2303 82 PRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNP 161 (542)
T ss_pred cccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchH
Confidence 9999999999999999999999999999886 779999999999999999987754322 45799999999988877789
Q ss_pred HHHHHHHHHHHcCCCC-CCCCCCCCcccceeecccccCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEE
Q psy14643 385 VVDAFLESSKYVNQST-IDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYG 463 (801)
Q Consensus 385 ~~~~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~g 463 (801)
+.+.|.++++++|++. .++|+ ....|++.|+.+|++|+|+|+..+||.|+.+++|++|++++.|+||++++ ++++|
T Consensus 162 ~~~a~~~a~~~~G~~~~~~~~~-~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~--~r~~g 238 (542)
T COG2303 162 IARAFIEAGEQLGFPTTPDPNG-ADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG--DRAVG 238 (542)
T ss_pred HHHHHHHHHHHcCCCcCccccc-CCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEEC--CeeEE
Confidence 9999999999999998 46888 77778888888877999999999999999999999999999999999998 79999
Q ss_pred EEEEECCE--EEEEEeeeEEEecCCCCCCHHHHHhhCCCChhhhhhCCCceeecCC-cccccccccccceEEEEeCCccc
Q psy14643 464 VEFVKNGK--KRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNTTEL 540 (801)
Q Consensus 464 V~~~~~g~--~~~v~A~k~VILaAGai~SprLLl~SGIG~~~~L~~~Gi~~v~~~p-VGrnl~dH~~~~~~~~~~~~~~~ 540 (801)
|++..++. ...+.+.++||||||+|+||+|||+||||+.+.|.++||.++.++| ||+|||||... .+.+..+....
T Consensus 239 v~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~~~ 317 (542)
T COG2303 239 VEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPTN 317 (542)
T ss_pred EEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCccc
Confidence 99995432 3445555799999999999999999999999999999999999999 99999999986 66666655441
Q ss_pred cchh-hHHH---HHHHHHhhccCCCCCCCCCccccEEEEEecCCCCCCCCCCeeeeeeccccccCCccccccccCcchhh
Q psy14643 541 FNYN-TMLA---QAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDEC 616 (801)
Q Consensus 541 ~~~~-~~~~---~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (801)
.... .+.. ....|... +.|+.. .+..+.. |...... ...|+.+.++.+......
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~---~~G~~~-~~~~~~g-f~~~~~~--~~~p~~~~~~~~~~~~~~--------------- 375 (542)
T COG2303 318 DSVLSLFSKLGIGADRYLLT---RDGPGA-TNHFEGG-FVRSGPA--GEYPDGQYHFAPLPLAIR--------------- 375 (542)
T ss_pred cccccccccccccceeEEee---cCCCcc-ccccccc-ccccCcc--ccCCCccccccccccccc---------------
Confidence 1110 0000 11233333 566655 2333333 5544332 345666666543221110
Q ss_pred HhhhhhccCCCCeEEEeeeecccCCCceEEecCCCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcCccccccccccC
Q psy14643 617 YNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLN 696 (801)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~g~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 696 (801)
.......+++.....+|.++|.|.+++.|+...|.|+++|..++.|++.+.++++..++++.+..+......
T Consensus 376 ------~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~-- 447 (542)
T COG2303 376 ------AAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKA-- 447 (542)
T ss_pred ------ccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHH--
Confidence 111234567777788999999999999999999999999999999999999999999999886555554322
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhCCcCcccccCcccCCCCCC-CcccCCCCeeeccCCcEEeeccCCCCCCCCCChHH
Q psy14643 697 PVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDG-TTVVDNELRVHGIKNLRVADASVMPILIAAHPMAP 775 (801)
Q Consensus 697 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GT~rMG~~~d~-~~VVD~~~rV~G~~NL~V~DaSvfP~~~~~NPtlT 775 (801)
+..|+. ...+++++..|++....+.+|++|||||| .|| ++|+|++|||||++||||+|+|+||+++++||++|
T Consensus 448 -e~~~~~---~~~~~~~~~~~~~~~~~t~~H~~GT~rMG--~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~t 521 (542)
T COG2303 448 -ELAPGP---RVTTDEDISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLT 521 (542)
T ss_pred -hhcCCC---ccccHHHHHHHHHhccCccccccccccCC--CCchhhccccccccccCCCeEEeCcccCcCccCCCccHh
Confidence 223332 35688899999999999999999999999 666 56666999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14643 776 IYMIGEKCADMIKDT 790 (801)
Q Consensus 776 i~AlA~R~Ad~I~~~ 790 (801)
|+|||+|+||+|++.
T Consensus 522 i~ala~raA~~I~~~ 536 (542)
T COG2303 522 IIALAERAADHILGD 536 (542)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999983
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=2.4e-68 Score=611.57 Aligned_cols=498 Identities=22% Similarity=0.267 Sum_probs=345.4
Q ss_pred ceEeecccccccccccccccEEEeeccccccccc-ccccCccccccccccCCCCCc------------------------
Q psy14643 229 LRVADASVMPILIAAHPMAPIYMIGEKCADMIKD-TWSQGENKLYANVTPDGIRRR------------------------ 283 (801)
Q Consensus 229 LrV~DaSv~P~~~~~n~~~~~~~i~~~~a~~i~~-~~~~g~~v~A~rLse~g~~~~------------------------ 283 (801)
=+|.||+-+|...+.-. . -=.+...|+|+- .+++| |++|+||||+ .+|+
T Consensus 32 ~~~~~~~~~~~~~~~~~-~---~~~~~~yD~IIVG~G~aG-~~lA~~Ls~~-~~VLllE~G~~~~~~~~~~~~~~~~~~~ 105 (587)
T PLN02785 32 PFIDKASSFSSSSSSSS-S---SGGDSAYDYIVVGGGTAG-CPLAATLSQN-FSVLLLERGGVPFGNANVSFLENFHIGL 105 (587)
T ss_pred chhhccccccccccccc-c---ccccccCCEEEECcCHHH-HHHHHHHhcC-CcEEEEecCCCCCCCchhhhHHhhCCcc
Confidence 45668888887432111 0 011223676655 45677 9999999994 4441
Q ss_pred -cCCcccccCcCcccccCCCeEEecCCCccCchhHhcccEEecCChhhHHHHHHcCCCCCCccchHHHHHHhhcCCCCCC
Q psy14643 284 -ADSIQAEKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPEL 362 (801)
Q Consensus 284 -~~~y~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~in~~~~~R~~~~df~~w~~~g~~~Ws~~~l~pyy~k~E~~~~~~~ 362 (801)
.|.|.+.+|.. ..++.+.++|||+|||||.||+|+|.|++++||+. .+|+|+++.|||+++|+.+..
T Consensus 106 ~d~~~~~~~q~~----~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-- 173 (587)
T PLN02785 106 ADTSPTSASQAF----ISTDGVINARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-- 173 (587)
T ss_pred cccCCccccccc----cCCCceeccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc--
Confidence 23555666654 56788999999999999999999999999999964 589999999999999986321
Q ss_pred CCCCCCCCCCcEeeecCCCCChHHHHHHHHHHHcCCCC-CCCCCCCCcccceeecccc-cCCeechhhHHhhccccCCCC
Q psy14643 363 RNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQST-IDYNQPENYLGFSRIQATT-RNGKRVSSYHAYIEPVRNRPN 440 (801)
Q Consensus 363 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~L~~~~~~~n 440 (801)
.+...+....|.++++++|++. +.+.. ....|.......+ ..|.|++++. ++ +..+++|
T Consensus 174 ----------------~~~~~~~~~~~~~a~~e~G~~~~n~~~~-d~~~G~~~g~~i~~~~g~R~saa~-l~-~~~~~~n 234 (587)
T PLN02785 174 ----------------WPKVAPWQAALRDSLLEVGVSPFNGFTY-DHVYGTKVGGTIFDEFGRRHTAAE-LL-AAGNPNK 234 (587)
T ss_pred ----------------CCCcChHHHHHHHHHHHcCCCccCCCCC-CCccceeeeEEEeCCCCEEcCHHH-HH-hhcCCCC
Confidence 1123466789999999999974 21111 1111111111222 4689998887 55 5778899
Q ss_pred eEEeeCceEEEEEeeCCC--CeEEEEEEEE-CCEEEEEE----eeeEEEecCCCCCCHHHHHhhCCCChhhhhhCCCcee
Q psy14643 441 LHISLNSQVTRVLIDSES--KKAYGVEFVK-NGKKRIVF----ARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVE 513 (801)
Q Consensus 441 l~v~~~a~V~rI~~d~~~--~~a~gV~~~~-~g~~~~v~----A~k~VILaAGai~SprLLl~SGIG~~~~L~~~Gi~~v 513 (801)
++|+++++|+||++++.+ ++|+||++.. +|+.+++. ++||||||||||+||+|||+|||||+++|+++|||++
T Consensus 235 l~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv 314 (587)
T PLN02785 235 LRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVV 314 (587)
T ss_pred eEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCee
Confidence 999999999999998642 3899999984 56555542 5689999999999999999999999999999999999
Q ss_pred ecCC-cccccccccccceEEEEeCCccccchhhHHHHHHHHHhhccCCCCCCCCCccccEEEEEecCCCCCCCCCCeeee
Q psy14643 514 RDLP-VGENLQDHITMAGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFI 592 (801)
Q Consensus 514 ~~~p-VGrnl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 592 (801)
.|+| ||+||+||+.. .+.+..+.+... .. ...+... ..|++.... .+|.............+...
T Consensus 315 ~dlP~VG~NL~DHp~~-~i~~~~~~~~~~---~~---~~~~~~~---~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~ 380 (587)
T PLN02785 315 LHNEHVGKGMADNPMN-SIFVPSKAPVEQ---SL---IQTVGIT---KMGVYIEAS----SGFGQSPDSIHCHHGIMSAE 380 (587)
T ss_pred ecCCCcccchhhCccc-ceEEEeCCCchh---hh---Hhhhhhh---ccccceecc----cccccCchhhhhhccccccc
Confidence 9999 99999999986 666666543211 00 1111111 223321000 00100000000000000000
Q ss_pred eec-cccccCCccccccccCcchhhHhhhhh---ccC--CCCeEEEeeeecccCCCceEEecCCCCCCCceeecCCCCCh
Q psy14643 593 FAI-GSLAADSGHTVRRGMGITDECYNQAYK---HLE--QKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDE 666 (801)
Q Consensus 593 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~p~s~g~v~l~~~d~~g~P~i~~~y~~~~ 666 (801)
... ...... . ...+ .+...+. ... ......+...+.+|.|||+|+|.++||.+.|.|+++|+.+|
T Consensus 381 ~~~~~~~~~~----~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p 451 (587)
T PLN02785 381 IGQLSTIPPK----Q----RTPE-AIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHP 451 (587)
T ss_pred cccccccCcc----c----ccch-hhhhhccCcccccccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCH
Confidence 000 000000 0 0000 0000000 000 00111234566799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccccccCC--C------------CCCCCCCCCCCCHHHHHHHHHHhCCcCcccccCc
Q psy14643 667 SDLWTLVEGIKMAVNLSRTEPFQRIGSKLNP--V------------PLPGCKQYEFESDDYWACTARQITATVHHMSGTC 732 (801)
Q Consensus 667 ~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GT~ 732 (801)
.|++.+++++|.+++++++.++..+...... . ..|+ ...++++|++|+|+...+.+|++|||
T Consensus 452 ~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc 527 (587)
T PLN02785 452 QDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPK----HTNDTKSLEQFCKDTVITIWHYHGGC 527 (587)
T ss_pred HHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCC----CCCCHHHHHHHHHHhcccccCCcccc
Confidence 9999999999999999999888776532111 0 0121 13578899999999999999999999
Q ss_pred ccCCCCCCCcccCCCCeeeccCCcEEeeccCCCCCCCCCChHHHHHHHHHHHHHHHhhhccCCC
Q psy14643 733 RMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGEN 796 (801)
Q Consensus 733 rMG~~~d~~~VVD~~~rV~G~~NL~V~DaSvfP~~~~~NPtlTi~AlA~R~Ad~I~~~~~~~~~ 796 (801)
+|| +|||+++||||++||||||+||||++|++||++|+||||||+|++|+++...++.
T Consensus 528 ~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~~~ 585 (587)
T PLN02785 528 HVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGRAA 585 (587)
T ss_pred cCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999 7999999999999999999999999999999999999999999999988765543
No 6
>KOG1238|consensus
Probab=100.00 E-value=1.2e-51 Score=453.48 Aligned_cols=260 Identities=43% Similarity=0.762 Sum_probs=229.3
Q ss_pred CccEEEecCccccccchHHHHHHHHHHHHcCCCCcccCccceeEEEEeecCCCCCC-CCCcEEEeeeccccccCCCcccc
Q psy14643 2 AGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDP-SYPDIEFIFAIGSLAADSGHTVR 80 (801)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~l~~~~~~~~~~~f~~~~~~~~~-~~pd~~~~~~~~~~~~~~~~~~~ 80 (801)
++++|..+ +..+...+......+.+|++.++||+++ .+ ++.++|+++.....+ ++||+|+++.+..+..+....+.
T Consensus 359 ~~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~~G~~~~-~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~ 435 (623)
T KOG1238|consen 359 PGFVFSTN-PVELSLIRLVGITTVGQYLEGGSGPLAS-PG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALR 435 (623)
T ss_pred ceeeecCC-CccccccccccchHHHHHHHcCCCCccc-Cc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhh
Confidence 34555555 4444444555556678999999999987 34 899999999876655 89999999998877655443344
Q ss_pred cccCcchhhhhhhhcccCCCCeEEEEEeccccCCeeEEEccCCCCCCCceeecCCCCChhhHHHHHHHHHHHHHHHhccc
Q psy14643 81 RGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEP 160 (801)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~srG~v~l~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~ 160 (801)
...+ ++|...+.+....+.+.|++.+++|+|||+|.|+|+||++.|+|++|||++|+|++.+++|||.+.++.++++
T Consensus 436 ~~~~---~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~a 512 (623)
T KOG1238|consen 436 KALG---EIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKA 512 (623)
T ss_pred hhcc---hHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHH
Confidence 4333 7888888877777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCHHHHHHHhhhccccccccccccccCcCCCCCcccCCCccccccCCceEeeccccccc
Q psy14643 161 FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPIL 240 (801)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GT~~Mg~~~~~~~VVD~~lrV~gv~~LrV~DaSv~P~~ 240 (801)
|+++..++...+.|+|......+|++|+||+|.++.|.||++|||+|||..|+++|||++||||||+|||||||||||.+
T Consensus 513 f~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~ 592 (623)
T KOG1238|consen 513 FQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPES 592 (623)
T ss_pred HHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCC
Confidence 99999998878999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccEEEeecccccccccccccC
Q psy14643 241 IAAHPMAPIYMIGEKCADMIKDTWSQG 267 (801)
Q Consensus 241 ~~~n~~~~~~~i~~~~a~~i~~~~~~g 267 (801)
|++|||+|+||||||+||+||++|...
T Consensus 593 psgN~nA~v~MIgek~ad~Ik~~~~~~ 619 (623)
T KOG1238|consen 593 PSGNPNAPVMMIGEKAADMIKEEWLAN 619 (623)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999998653
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=2.6e-49 Score=444.61 Aligned_cols=415 Identities=16% Similarity=0.139 Sum_probs=259.0
Q ss_pred ecCCCccCchhHhcccEEecCChhhHHHHHHcCCCCC--CccchHHHHHHhhcCCCCCCCCCCCCCCCCcEeeecCCCCC
Q psy14643 306 WPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGW--SYDEVYPYFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKS 383 (801)
Q Consensus 306 ~~~g~~vGGsS~in~~~~~R~~~~df~~w~~~g~~~W--s~~~l~pyy~k~E~~~~~~~~~~~~~g~~g~~~~~~~~~~~ 383 (801)
..|-|+|||+|+||++.|.|+++.+ ..+.+ .|| +|+||+|||+++|++++.+.. . .. .+....
T Consensus 111 ~ar~R~vGGsS~hW~g~~~R~~p~~---r~g~~-~dWPI~y~eL~PyY~~Ae~~~gv~g~--~---~~------~~~~~~ 175 (544)
T TIGR02462 111 EAVTRGVGGMSTHWTCATPRFHREE---RPKLS-DDAAEDDAEWDRLYTKAESLIGTSTD--Q---FD------ESIRHN 175 (544)
T ss_pred hheeeccCchhhhcCcccCCCCHHh---ccCCC-CCCCCCHHHHHHHHHHHHHHhCCCCC--c---CC------Ccccch
Confidence 3478999999999999999999964 22223 689 999999999999999986421 0 00 011112
Q ss_pred hHHHHHHHHHHHcCC-CCCCCCCCCCcccceeecccccCCeechhhHHhhcccc----CCCCeEEeeCceEEEEEeeCCC
Q psy14643 384 QVVDAFLESSKYVNQ-STIDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVR----NRPNLHISLNSQVTRVLIDSES 458 (801)
Q Consensus 384 ~~~~~~~~a~~~~G~-~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~----~~~nl~v~~~a~V~rI~~d~~~ 458 (801)
...+.+.++++ |+ ... .. ...|..+ +|..+.|+|+..+.+..+. .++|++|++++.|+||++|+++
T Consensus 176 ~~~~~~~~~~~--g~~~~~--~~---PlA~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~ 246 (544)
T TIGR02462 176 LVLRKLQDEYK--GQRDFQ--PL---PLACHRR--TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETN 246 (544)
T ss_pred hHHHHHHHHhc--cccccc--cC---chhhhcc--CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCC
Confidence 22223333332 33 111 11 1122222 5778999988767775555 4889999999999999998765
Q ss_pred -CeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHhhCCCChhhhhhCCCceeecCC-cccccccccccceEEEE
Q psy14643 459 -KKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFT 534 (801)
Q Consensus 459 -~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~SGIG~~~~L~~~Gi~~v~~~p-VGrnl~dH~~~~~~~~~ 534 (801)
++|++|+|.. +|+.++++|+ .||||||+||||||||+|+++..... .|+..-...+ ||||||||+.. .+.+.
T Consensus 247 ~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~~~p--~gl~Nss~~g~VGRnlmdh~~~-~~~~~ 322 (544)
T TIGR02462 247 ESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQLGRP--DPTNPPPLLPSLGRYITEQSMT-FCQIV 322 (544)
T ss_pred CceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCCcCC--CCcCCCCCCCCCCcchhcCCCc-cEEEE
Confidence 6899999985 6888999995 79999999999999999998742211 1111110124 99999999986 66666
Q ss_pred eCCcccc-chhhHHHHHHHHHhhccCCC-CCCC-CCccccEEEEEecCCCCCCCCCCeeeeeeccccccCCcccc-cccc
Q psy14643 535 HNTTELF-NYNTMLAQAFTMMYNISKGG-GMGS-IPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTV-RRGM 610 (801)
Q Consensus 535 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-Gp~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~ 610 (801)
++++... ..+.. ....|+.. .. .... .........|.. ..|... .+......++..+ ++.+
T Consensus 323 ~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~i~~~~-------~~~~~~---~~~~~~~~w~~~~~~~~~ 387 (544)
T TIGR02462 323 LSTELVDSVRSDP--RGLDWWKE---KVANHMMKHPEDPLPIPFRD-------PEPQVT---TPFTEEHPWHTQIHRDAF 387 (544)
T ss_pred ecchhhhhccCCc--cccccccc---cchhhhccccCCcccccccc-------cCcccc---cccccccccchhhhhhhh
Confidence 6554210 00000 00000000 00 0000 000000000000 000000 0000000000000 0000
Q ss_pred CcchhhHhhhhhccCCCCeE-EEeeeecccCCCceEEecC--CCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcCcc
Q psy14643 611 GITDECYNQAYKHLEQKNTW-TIWPMLLLPKSRGRILLGS--RNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEP 687 (801)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~s~g~v~l~~--~d~~g~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~ 687 (801)
.+ ............+ .-+.....|..+++|+|++ +|.+|+|++.++|..+++|++.+..+.+.+.++++..+
T Consensus 388 ~~-----g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G 462 (544)
T TIGR02462 388 SY-----GAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKIG 462 (544)
T ss_pred hc-----ccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 0000000111111 1233456799999999975 69999999999999999999999999999999866543
Q ss_pred ccccccccCCCCCCCCCCCCCCCHHHHHHHHHHhCCcCcccccCcccCCCCCCCcccCCCCeeeccCCcEEeeccCCCCC
Q psy14643 688 FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPIL 767 (801)
Q Consensus 688 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GT~rMG~~~d~~~VVD~~~rV~G~~NL~V~DaSvfP~~ 767 (801)
...... .+. + .....+.|++||||||.++. +||||++|||||++||||+|+|+||+.
T Consensus 463 ~~~~~~------~~~--------------~--~~~~~~~H~~Gt~rMG~dp~-~sVvd~~~rv~g~~NL~V~d~s~~Pt~ 519 (544)
T TIGR02462 463 GYLPGS------LPQ--------------F--MEPGLALHLAGTTRIGFDEQ-TTVANTDSKVHNFKNLYVGGNGNIPTA 519 (544)
T ss_pred CCcccc------ccc--------------c--cCCCccccCCCCeecCCCCC-CceECCCCcEeCCCCeEEeccCcCCCC
Confidence 211110 000 0 00125789999999995433 799999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhh
Q psy14643 768 IAAHPMAPIYMIGEKCADMIKDTW 791 (801)
Q Consensus 768 ~~~NPtlTi~AlA~R~Ad~I~~~~ 791 (801)
+++|||+|+||+|+|+|++|++++
T Consensus 520 ~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 520 FGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999875
No 8
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=7.6e-48 Score=413.21 Aligned_cols=261 Identities=39% Similarity=0.677 Sum_probs=209.9
Q ss_pred cccc-cccccCccccccccccCCC-CCc---------------------------cCCcccccCcCcccccCCCeEEecC
Q psy14643 258 DMIK-DTWSQGENKLYANVTPDGI-RRR---------------------------ADSIQAEKQPGQCQAMVKQRCRWPR 308 (801)
Q Consensus 258 ~~i~-~~~~~g~~v~A~rLse~g~-~~~---------------------------~~~y~~~~~~~~~~~~~~~~~~~~~ 308 (801)
|.|+ ..+++| ||+|.||||+|+ +++ .|.|.+.++.. ++++.+.|++
T Consensus 2 D~iIVGsG~~G-~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 2 DYIIVGSGAGG-SVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEES-SHHH-HHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CEEEECcCHHH-HHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 4444 445566 999999999985 441 01233334443 7888999999
Q ss_pred CCccCchhHhcccEEecCChhhHHHHHHc-CCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCcEee-ecCCCCChHH
Q psy14643 309 GKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTTGYVPV-GYNPYKSQVV 386 (801)
Q Consensus 309 g~~vGGsS~in~~~~~R~~~~df~~w~~~-g~~~Ws~~~l~pyy~k~E~~~~~~~~~~~~~g~~g~~~~-~~~~~~~~~~ 386 (801)
|++|||||+||+|+++|+++.||+.|... |.++|+|++|+|||+++|++..+ ..+.|+..+++++ ..+....+..
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~---~~~~~g~~~~~~v~~~~~~~~~~~ 153 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGP---SSDLHGVDGPLPVSSSPPYPSPMN 153 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTT---BGGGSCBSSSEEEHHHCSCHCTHH
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccc---cccccccccccccccccCCCCHHH
Confidence 99999999999999999999999999987 77889999999999999999876 3677888899998 5566778888
Q ss_pred HHHHHHHHHcCCCC-CCCCCCCCcccceeecccccCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEE
Q psy14643 387 DAFLESSKYVNQST-IDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVE 465 (801)
Q Consensus 387 ~~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~ 465 (801)
+.|.++++++|++. .+++. +..+|++.+...|++|+|+|+..+||.++.+++|++|+++++|+||++++++++|+||+
T Consensus 154 ~~~~~a~~~~G~~~~~~~~~-~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~ 232 (296)
T PF00732_consen 154 QALMDAAEELGIPVPQDFNG-CDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVE 232 (296)
T ss_dssp HHHHHHHHHTTHHBCSCTTS-STCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEE
T ss_pred HHHHHHHHHcCCcccccccc-ccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeee
Confidence 99999999999994 56766 66667666655699999999999999999999999999999999999987778999999
Q ss_pred EEEC-CE-EEEEEeeeEEEecCCCCCCHHHHHhhCCCChhhhhhCCCceeecCCcccccccccc
Q psy14643 466 FVKN-GK-KRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGENLQDHIT 527 (801)
Q Consensus 466 ~~~~-g~-~~~v~A~k~VILaAGai~SprLLl~SGIG~~~~L~~~Gi~~v~~~pVGrnl~dH~~ 527 (801)
+... +. .+.+.++|+||||||||+||+|||+||||++++|+++||+++.++||||||||||.
T Consensus 233 ~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~~ 296 (296)
T PF00732_consen 233 YVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHPV 296 (296)
T ss_dssp EEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--EE
T ss_pred eeecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhcccC
Confidence 9964 33 34555557999999999999999999999999999999999999999999999983
No 9
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.8e-34 Score=331.60 Aligned_cols=211 Identities=30% Similarity=0.498 Sum_probs=172.1
Q ss_pred HHHHHHcCCCCcccCccceeEEEEeecCCCCCCCCCcEEEeeeccccccCCCcccccccCcchhhhhhhhcccCCCCeEE
Q psy14643 25 TMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWT 104 (801)
Q Consensus 25 ~~~y~~~~~G~l~~~~~~~~~~~f~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (801)
..+|+..++|+++. ...+..+|++... ....|++++.+.+...... +. .......++
T Consensus 320 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~-~~------------------~~~~~~~~~ 376 (532)
T TIGR01810 320 GAQWLFGRKGAGAS--NHFEGGGFVRSND--DVDYPNIQYHFLPVAIRYD-GT------------------KAPKAHGFQ 376 (532)
T ss_pred HHHHHhcCCCCccc--cccceeEEEecCC--CCCCCCeEEEEEeeeeccC-CC------------------CCCCCCcEE
Confidence 34788888999876 4567788887631 1256889887765321100 00 000113467
Q ss_pred EEEeccccCCeeEEEccCCCCCCCceeecCCCCChhhHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCH
Q psy14643 105 IWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESD 184 (801)
Q Consensus 105 ~~~~l~~P~srG~v~l~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 184 (801)
+...+++|+|||+|+|+++||.+.|+|+++|+++|.|++.|+++++++++++++.+++.+...+ ..|+ ....+|
T Consensus 377 ~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~p~---~~~~~d 450 (532)
T TIGR01810 377 VHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE---ISPG---PEVQTD 450 (532)
T ss_pred EEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc---cCCC---CCCCCH
Confidence 7778899999999999999999999999999999999999999999999999998888764332 2333 235789
Q ss_pred HHHHHHhhhccccccccccccccCcCCCCCcccCCCccccccCCceEeecccccccccccccccEEEeeccccccccccc
Q psy14643 185 DYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTW 264 (801)
Q Consensus 185 ~~~~~~~~~~~~~~~H~~GT~~Mg~~~~~~~VVD~~lrV~gv~~LrV~DaSv~P~~~~~n~~~~~~~i~~~~a~~i~~~~ 264 (801)
++|++|+|+...+.+|++||||||+.++++||||++||||||+|||||||||||++|++||++|+||||||+||+|+++.
T Consensus 451 ~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~ 530 (532)
T TIGR01810 451 EEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGKK 530 (532)
T ss_pred HHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986566899999999999999999999999999999999999999999999999764
No 10
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=1.6e-34 Score=275.34 Aligned_cols=143 Identities=47% Similarity=0.732 Sum_probs=118.2
Q ss_pred cCCeeEEEccCCCCCCCceeecCCCCChhhHHHHHHHHHHHHHHHhccccccccccC-CCCCCCCCCCCCCCCHHHHHHH
Q psy14643 112 PKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL-NPVPLPGCKQYEFESDDYWACT 190 (801)
Q Consensus 112 P~srG~v~l~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~ 190 (801)
|+|||+|+|+++||++.|.|+++|+++++|++.|+++++.+++++++. ++++.... .+...+.+......++++|++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 899999999999999999999999999999999999999999999998 76664321 1122233333456789999999
Q ss_pred hhhccccccccccccccCcCCCCCcccCCCccccccCCceEeecccccccccccccccEEEeeccc
Q psy14643 191 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256 (801)
Q Consensus 191 ~~~~~~~~~H~~GT~~Mg~~~~~~~VVD~~lrV~gv~~LrV~DaSv~P~~~~~n~~~~~~~i~~~~ 256 (801)
+++...+.+|++||||||++++. +|||++|||||++||||+||||||+.+++||++|+||||+|+
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999998775 999999999999999999999999999999999999999985
No 11
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=3e-33 Score=324.80 Aligned_cols=209 Identities=28% Similarity=0.432 Sum_probs=170.5
Q ss_pred HHHHHHcCCCCcccCccceeEEEEeecCCCCCCCCCcEEEeeeccccccCCCcccccccCcchhhhhhhhcccCCCCeEE
Q psy14643 25 TMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWT 104 (801)
Q Consensus 25 ~~~y~~~~~G~l~~~~~~~~~~~f~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (801)
..+|+..++|+++. ...+..+|++... ....|++++.+.+..+... +. .......++
T Consensus 327 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~-~~------------------~~~~~~~~~ 383 (560)
T PRK02106 327 GAEWLFTGTGLGAS--NHFEAGGFIRSRA--GVDWPNIQYHFLPVAIRYD-GS------------------NAVKGHGFQ 383 (560)
T ss_pred HHHHHhcCCCCccc--cccceeeEEecCC--CCCCCCeEEEEeecccccc-CC------------------CCCCCCeEE
Confidence 45788889999876 3556778887531 1146888877655322111 00 000123567
Q ss_pred EEEeccccCCeeEEEccCCCCCCCceeecCCCCChhhHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCH
Q psy14643 105 IWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESD 184 (801)
Q Consensus 105 ~~~~l~~P~srG~v~l~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 184 (801)
+...+++|+|||+|+|+|+||++.|+|+++|+++|.|++.|+++++++++++++.+++.+...+ ..|++ +..+|
T Consensus 384 ~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~p~~---~~~~~ 457 (560)
T PRK02106 384 AHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE---ISPGA---DVQTD 457 (560)
T ss_pred EEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc---cCCCc---ccCCH
Confidence 7778899999999999999999999999999999999999999999999999998887765432 23442 24689
Q ss_pred HHHHHHhhhccccccccccccccCcCCCCCcccCCCccccccCCceEeecccccccccccccccEEEeeccccccccccc
Q psy14643 185 DYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTW 264 (801)
Q Consensus 185 ~~~~~~~~~~~~~~~H~~GT~~Mg~~~~~~~VVD~~lrV~gv~~LrV~DaSv~P~~~~~n~~~~~~~i~~~~a~~i~~~~ 264 (801)
++|++||++...+.+|++||||||+ |++||||++|||||++|||||||||||+++++||++|+||||||+||+|++++
T Consensus 458 ~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 458 EEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred HHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999997 45899999999999999999999999999999999999999999999999876
No 12
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=4.4e-32 Score=258.43 Aligned_cols=143 Identities=47% Similarity=0.732 Sum_probs=117.4
Q ss_pred cCCCceEEecCCCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcCccccccccccC-CCCCCCCCCCCCCCHHHHHHH
Q psy14643 639 PKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLN-PVPLPGCKQYEFESDDYWACT 717 (801)
Q Consensus 639 p~s~g~v~l~~~d~~g~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~ 717 (801)
|.|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++++. +++++.... +...+.+......++++|++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 789999999999999999999999999999999999999999999998 666643222 222222333346788999999
Q ss_pred HHHhCCcCcccccCcccCCCCCCCcccCCCCeeeccCCcEEeeccCCCCCCCCCChHHHHHHHHHH
Q psy14643 718 ARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783 (801)
Q Consensus 718 ~~~~~~~~~H~~GT~rMG~~~d~~~VVD~~~rV~G~~NL~V~DaSvfP~~~~~NPtlTi~AlA~R~ 783 (801)
++....+.+|++||||||++++. +|||++|||||++||||+|+||||+++++||++|+||||+|+
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999977775 999999999999999999999999999999999999999996
No 13
>PLN02785 Protein HOTHEAD
Probab=99.97 E-value=5.5e-32 Score=311.24 Aligned_cols=151 Identities=25% Similarity=0.342 Sum_probs=134.5
Q ss_pred EEEEeccccCCeeEEEccCCCCCCCceeecCCCCChhhHHHHHHHHHHHHHHHhccccccccccCCCC------------
Q psy14643 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPV------------ 171 (801)
Q Consensus 104 ~~~~~l~~P~srG~v~l~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 171 (801)
.+...+++|+|||+|+|+|+||.+.|.|++||++||.|++.+++++|.+++++++++++.+...+...
T Consensus 416 ~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (587)
T PLN02785 416 FILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKAN 495 (587)
T ss_pred eEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccc
Confidence 45568899999999999999999999999999999999999999999999999999988775321100
Q ss_pred --CCCCCCCCCCCCHHHHHHHhhhccccccccccccccCcCCCCCcccCCCccccccCCceEeecccccccccccccccE
Q psy14643 172 --PLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPI 249 (801)
Q Consensus 172 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GT~~Mg~~~~~~~VVD~~lrV~gv~~LrV~DaSv~P~~~~~n~~~~~ 249 (801)
..|+ ...+|++|++|+|++..+.||++|||+|| +|||+++|||||+|||||||||||.+|++|||+|+
T Consensus 496 ~~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv 565 (587)
T PLN02785 496 INLIPK----HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATV 565 (587)
T ss_pred cccCCC----CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHH
Confidence 0121 13578999999999999999999999998 49999999999999999999999999999999999
Q ss_pred EEeeccccccccccc
Q psy14643 250 YMIGEKCADMIKDTW 264 (801)
Q Consensus 250 ~~i~~~~a~~i~~~~ 264 (801)
||||||+|+.|+++.
T Consensus 566 ~miaer~A~~Il~~~ 580 (587)
T PLN02785 566 MMMGRYMGVKILRER 580 (587)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999774
No 14
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.95 E-value=4.4e-29 Score=285.75 Aligned_cols=204 Identities=32% Similarity=0.462 Sum_probs=169.4
Q ss_pred HHHHHcCCCCcccCccceeEEEEeecCCCCCCCCCcEEEeeeccccccCCCcccccccCcchhhhhhhhcccCCCCeEEE
Q psy14643 26 MMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTI 105 (801)
Q Consensus 26 ~~y~~~~~G~l~~~~~~~~~~~f~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (801)
.+|...++|++++ +..+.. |+.+... ...||+|++|.+..+... .......+++
T Consensus 332 ~~~~~~~~G~~~~--~~~~~g-f~~~~~~--~~~p~~~~~~~~~~~~~~---------------------~~~~~~~~~~ 385 (542)
T COG2303 332 DRYLLTRDGPGAT--NHFEGG-FVRSGPA--GEYPDGQYHFAPLPLAIR---------------------AAGAEHGFTL 385 (542)
T ss_pred eeEEeecCCCccc--cccccc-ccccCcc--ccCCCccccccccccccc---------------------ccccCCccEE
Confidence 4677778999876 344444 8876421 268999999987543211 1123467899
Q ss_pred EEeccccCCeeEEEccCCCCCCCceeecCCCCChhhHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCHH
Q psy14643 106 WPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDD 185 (801)
Q Consensus 106 ~~~l~~P~srG~v~l~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 185 (801)
..+..||.|||+|++++.||...|.|++||++++.|++.++++++..++++.+..+......+ ..|+ ..+.+++
T Consensus 386 ~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e---~~~~---~~~~~~~ 459 (542)
T COG2303 386 HVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE---LAPG---PRVTTDE 459 (542)
T ss_pred eeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh---hcCC---CccccHH
Confidence 999999999999999999999999999999999999999999999999999987777665442 2333 2457889
Q ss_pred HHHHHhhhccccccccccccccCcCCCCCcccC-CCccccccCCceEeecccccccccccccccEEEeecccccccccc
Q psy14643 186 YWACTARQITATVHHMSGTCRMGINEDGTTVVD-NELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDT 263 (801)
Q Consensus 186 ~~~~~~~~~~~~~~H~~GT~~Mg~~~~~~~VVD-~~lrV~gv~~LrV~DaSv~P~~~~~n~~~~~~~i~~~~a~~i~~~ 263 (801)
++.+|++....|.+|++||||||. |+..||| ++|||||++|||||||||||+++++||++|++|||+|+||.|+++
T Consensus 460 ~~~~~~~~~~~t~~H~~GT~rMG~--Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 460 DISAAIRFLARTAYHPMGTCRMGS--DPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred HHHHHHHhccCccccccccccCCC--CchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 999999999999999999999995 5555555 999999999999999999999999999999999999999999873
No 15
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.71 E-value=7.8e-18 Score=190.36 Aligned_cols=135 Identities=21% Similarity=0.204 Sum_probs=107.0
Q ss_pred EeccccCCeeEEEccCCCCCCCceeecCCCCChhhHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCHHH
Q psy14643 107 PMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDDY 186 (801)
Q Consensus 107 ~~l~~P~srG~v~l~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 186 (801)
..+.+|.+|-++.-+.+|.++.|+...+|-.++.|++.+.++++.+.++++..+...... .+.
T Consensus 409 e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G~~~~~~------~~~----------- 471 (544)
T TIGR02462 409 RTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKIGGYLPGS------LPQ----------- 471 (544)
T ss_pred ccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCcccc------ccc-----------
Confidence 345555555444434479999999999999999999999999999999987755321110 000
Q ss_pred HHHHhhhccccccccccccccCcCCCCCcccCCCccccccCCceEeecccccccccccccccEEEeeccccccccccc
Q psy14643 187 WACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTW 264 (801)
Q Consensus 187 ~~~~~~~~~~~~~H~~GT~~Mg~~~~~~~VVD~~lrV~gv~~LrV~DaSv~P~~~~~n~~~~~~~i~~~~a~~i~~~~ 264 (801)
+. ....++|++||||||.++ .++|||+++||||++||||+|+|+||+.+++||++|+||+|+|+|+.|++..
T Consensus 472 ---~~--~~~~~~H~~Gt~rMG~dp-~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 472 ---FM--EPGLALHLAGTTRIGFDE-QTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred ---cc--CCCccccCCCCeecCCCC-CCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 00 112578999999999754 4799999999999999999999999999999999999999999999998653
No 16
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.72 E-value=0.0036 Score=73.39 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=52.5
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC-HHHHH
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT-PHILM 495 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S-prLLl 495 (801)
.|..+.+..|++|++++.|++|+.|++ ++|+||.+..+++.++++|+|-||||+|.++. +.++.
T Consensus 218 ~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 218 RLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 344556678999999999999999765 68999999877888899997679999999985 44444
No 17
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.54 E-value=0.006 Score=70.63 Aligned_cols=64 Identities=20% Similarity=0.474 Sum_probs=51.5
Q ss_pred HhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC-HHHHH
Q psy14643 430 AYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT-PHILM 495 (801)
Q Consensus 430 ~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S-prLLl 495 (801)
.++..+.++++++|++++.|++|+.++ ++++||++..++..++++|+|.||||+|.++. +.++.
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 345444556799999999999999874 68999998877888899997789999999975 44443
No 18
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.24 E-value=0.011 Score=69.20 Aligned_cols=62 Identities=19% Similarity=0.385 Sum_probs=51.3
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhh
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHS 497 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~S 497 (801)
..+++.+++|++++.|++|+.++ ++++||.+..+++..+++|++.||||+|.+++-+-|+..
T Consensus 216 ~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 216 IGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 34457799999999999999864 689999988778888999976799999999986665543
No 19
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.06 E-value=0.016 Score=67.64 Aligned_cols=60 Identities=17% Similarity=0.390 Sum_probs=49.7
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
...++.+++|++++.|++|+.++ ++++||++..+++.++++|+|-||||+|.+..-.=|+
T Consensus 216 ~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 216 EAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 34456799999999999999875 6899999987788889999768999999998744333
No 20
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.84 E-value=0.044 Score=62.29 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=44.3
Q ss_pred hccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCH
Q psy14643 432 IEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTP 491 (801)
Q Consensus 432 L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~Sp 491 (801)
|.....+.+++|+.++.|++|+.+++ ++++||++.. +++...+.+ |.||||+|.+..-
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n 194 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSN 194 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCC
Confidence 33344567899999999999998654 6799999874 455556677 5799999988763
No 21
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.53 E-value=0.027 Score=61.60 Aligned_cols=57 Identities=26% Similarity=0.404 Sum_probs=41.3
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
...+.|++|+++++|++|..++ ++++||+.. +. .+.|+ .||+|+|+ .|++|+-.+|+
T Consensus 156 ~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~--~g--~i~ad-~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 156 EAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTS--DG--EIRAD-RVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHTT-EEEESEEEEEEEEET--TEEEEEEET--TE--EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred HHHHhhhhccccccccchhhcc--ccccccccc--cc--ccccc-eeEecccc-cceeeeecccc
Confidence 3345589999999999999987 578788764 33 37885 79999996 78888777754
No 22
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.53 E-value=0.1 Score=60.27 Aligned_cols=57 Identities=12% Similarity=0.323 Sum_probs=43.9
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCH-HHHH
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTP-HILM 495 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~Sp-rLLl 495 (801)
....+++|++++.|++|+.++ ++++||.+.. +++..++.|+ .||||+|.+... .++.
T Consensus 200 ~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 200 VQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHHH
Confidence 345689999999999998654 6899998874 3466788894 799999987754 4443
No 23
>PRK07121 hypothetical protein; Validated
Probab=95.45 E-value=0.035 Score=64.00 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=48.7
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
...++.+++|++++.|++|+.+++ ++++||++..+++.++++|+|.||||+|.+..-+-|+
T Consensus 185 ~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 185 KRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 344567899999999999998754 6899999987777788999568999999987544333
No 24
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.23 E-value=0.041 Score=64.30 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=47.0
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
..+.+++|++++.|++|+.++ ++++||.+..+++...+.|+|-||||+|.++...=
T Consensus 227 ~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~e 282 (564)
T PRK12845 227 VLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDME 282 (564)
T ss_pred HHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCccccHH
Confidence 446789999999999998653 78999988877778889998789999999986543
No 25
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.67 E-value=0.079 Score=62.35 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=48.2
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
..+.+.+++|+.++.|++|+.++ ++++||.+..++...+++|+|.||||+|++..-.-++
T Consensus 225 ~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 225 KSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 34456789999999999999874 6899999886666678899568999999998755443
No 26
>PRK12839 hypothetical protein; Provisional
Probab=94.63 E-value=0.071 Score=62.44 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=44.6
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
+.+.+++|+.++.|++|+.+++ ++++||.+...+...++.++|.||||+|.+..-.-
T Consensus 224 a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~ 280 (572)
T PRK12839 224 ADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVD 280 (572)
T ss_pred HHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHH
Confidence 4456899999999999987643 68999998754445666676789999999987433
No 27
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.55 E-value=0.084 Score=62.08 Aligned_cols=60 Identities=22% Similarity=0.306 Sum_probs=48.7
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
..+++.+++|++++.|++|+.++ ++++||.+..+++.+++.|++.||||+|++..-.=|+
T Consensus 229 ~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 229 YSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 34456789999999999998764 6899999887777888998668999999998754333
No 28
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.36 E-value=0.069 Score=60.19 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=44.3
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
.++.+++|+.++.|++|+.++ ++|+||++. .+++.++|+|+ .||||+|.++. .++.
T Consensus 151 ~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 151 AEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred HhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 344569999999999999986 699999999 67899999996 89999999999 4443
No 29
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.09 E-value=0.33 Score=56.69 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=46.4
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
...+++++.++.|+.|..++ ++++||++.. .++..+|.|+ .||+|||+ .+.+|+...|+
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred HhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence 45689999999999998765 6799999863 4556789995 69999996 47777765553
No 30
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.03 E-value=0.11 Score=59.52 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=51.7
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE-ECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV-KNGKKRIVFARKEIILSAGAINTPHILMHSGVGP 501 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~-~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG~ 501 (801)
..++.+++|+.++.|++|+.++ ++++||.+. .+++...++| |.||||+|.+.+.+.|+.+-.|+
T Consensus 140 ~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 140 SAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcCC
Confidence 3456789999999999999864 689999885 4566678888 47999999999998888765543
No 31
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.98 E-value=0.12 Score=58.54 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=44.9
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S 490 (801)
++..+.++.|++|+.++.|++|+.++ +++.||.+..++..+++.| |.||||+|.+..
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence 44334456799999999999998764 6899988776666678899 479999999764
No 32
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=93.76 E-value=0.21 Score=55.13 Aligned_cols=68 Identities=25% Similarity=0.395 Sum_probs=51.9
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVG 500 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG 500 (801)
++..+.+++|++|..+++|+.|...+++.-..-|.-...+...+++|+ -|+|.||+ ++=.||++|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCCh
Confidence 333345677999999999999998876544433333346788899995 89999998 688899999984
No 33
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.29 E-value=0.13 Score=60.10 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=44.6
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S 490 (801)
.+++|++|+.++.|++|+.++++++++||.+..++....+.| |-||||+|.++.
T Consensus 145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 145 LQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCcc
Confidence 345799999999999999875346899998877777778888 579999999753
No 34
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=93.24 E-value=0.22 Score=58.59 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=47.3
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHh
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMH 496 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~ 496 (801)
...+.+++|+.++.|++|+.++ ++++||.+...+....+.++|.||||+|.+..-.-++.
T Consensus 223 ~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 223 SALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHHH
Confidence 3456789999999999999875 68999998854455678887689999999875554443
No 35
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=92.95 E-value=0.19 Score=57.85 Aligned_cols=67 Identities=15% Similarity=0.308 Sum_probs=49.1
Q ss_pred echhhHHhhccc---cCCCCeEEeeCceEEEEEeeCC--CCeEEEEEEEEC--CEEEEEEeeeEEEecCCCCCC
Q psy14643 424 RVSSYHAYIEPV---RNRPNLHISLNSQVTRVLIDSE--SKKAYGVEFVKN--GKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 424 r~s~~~~~L~~~---~~~~nl~v~~~a~V~rI~~d~~--~~~a~gV~~~~~--g~~~~v~A~k~VILaAGai~S 490 (801)
|.+...+++.|+ ++..++++++++.|++|.++.+ .++|+||++..+ ++...+.+++-|||+.|++.+
T Consensus 221 ~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 221 KYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred CCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 333444454443 3577999999999999999623 378999999863 345566777899999998854
No 36
>PLN02815 L-aspartate oxidase
Probab=92.54 E-value=0.22 Score=58.58 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=44.3
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCC--eEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESK--KAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~--~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
+.+.+|++|+.++.|++|+.+++++ +++||.+. .+|....+.| |-||||+|.++-
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 3445799999999999999875544 48999886 3577788888 589999998863
No 37
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=92.44 E-value=8.2 Score=44.60 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=41.4
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHh
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMH 496 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~ 496 (801)
.++.+.+|++++.|++|..++ +++++|++. +|+ ++.|+ .||+|++...+-..|+.
T Consensus 229 ~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~-~g~--~~~ad-~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 229 AEDLGGELRLNAEVIRIETEG--GRATAVHLA-DGE--RLDAD-AVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHHCCCEEEECCeEEEEEeeC--CEEEEEEEC-CCC--EEECC-EEEECCcHHHHHHHhcC
Confidence 345689999999999999875 578888764 343 46785 69999988777766653
No 38
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=92.12 E-value=0.36 Score=56.64 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=44.6
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
....+.+++|+.++.|++|+.++ +++.||... .+|....+.| |-||||+|.+..
T Consensus 127 ~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 127 QQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 33446789999999999999864 789999886 3677888999 579999999875
No 39
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.94 E-value=0.35 Score=56.74 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=44.5
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
..+.+++|+.++.+++|+.+++ +++.||.+. .+|+.+.+.|+ -||||+|.+..
T Consensus 136 ~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 136 NLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 3467899999999999998643 689999986 36788889994 89999999875
No 40
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.77 E-value=0.43 Score=56.34 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=42.4
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
.+|++|+.++.|++|+.+++ ++++||.+.. ++....+.|+ -||||+|.+..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 46899999999999998643 6899999874 5666788885 79999999864
No 41
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.53 E-value=0.35 Score=57.53 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=43.9
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
..+.|++|+.++.|++|+.++ ++++||.+.. +|..+.+.|+ .||||+|.+..
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 346789999999999999875 6899999874 5777788885 79999999886
No 42
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.17 E-value=0.42 Score=56.48 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=44.0
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
..+.+++|+.++.|++|+.+++ ++++||.+. .+|..+.+.|+ .||||+|.++.
T Consensus 159 ~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 159 SLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 3457899999999999998643 689999885 36777889994 79999999875
No 43
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.11 E-value=1.2 Score=52.58 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=43.0
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
...+.|++|++++.|++|+.++ +++.||... .+++.+.+.| |.||||+|....
T Consensus 144 ~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 144 NLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 3446799999999999998864 689999865 3576678889 579999999864
No 44
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=91.09 E-value=0.56 Score=54.87 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=42.0
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEE--EC-------------CEEEEEEeeeEEEecCCCCCC-HHHHH
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFV--KN-------------GKKRIVFARKEIILSAGAINT-PHILM 495 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~-------------g~~~~v~A~k~VILaAGai~S-prLLl 495 (801)
..+++|++++.|++|+.++ ++|+||++. .. +...++.| |-||||+|.++. +.++.
T Consensus 164 ~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~n~em~~ 234 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGGNHELVR 234 (549)
T ss_pred hCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCcccCHHHHH
Confidence 4579999999999999864 789999874 11 23567888 579999999984 44443
No 45
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=90.95 E-value=0.65 Score=51.71 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=72.1
Q ss_pred CcEeeecCCCCChHHHHHHHHHHHcCCCC-CCCCC-------C---CCcccceeecc-cccCCeechhhHHhhccccCCC
Q psy14643 372 GYVPVGYNPYKSQVVDAFLESSKYVNQST-IDYNQ-------P---ENYLGFSRIQA-TTRNGKRVSSYHAYIEPVRNRP 439 (801)
Q Consensus 372 g~~~~~~~~~~~~~~~~~~~a~~~~G~~~-~~~~~-------~---~~~~g~~~~~~-~~~~g~r~s~~~~~L~~~~~~~ 439 (801)
|.+.+..........+++.+.+.+.|+.. ...+. | ..+.+.-+.+. ++-+.. ....+++..+. ..
T Consensus 90 g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~--~~t~~l~e~a~-~~ 166 (429)
T COG0579 90 GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPG--ELTRALAEEAQ-AN 166 (429)
T ss_pred CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHH--HHHHHHHHHHH-Hc
Confidence 44666655555556677778888888772 11110 0 11222222222 121111 12333554334 45
Q ss_pred CeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCCCh
Q psy14643 440 NLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVGPR 502 (801)
Q Consensus 440 nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG~~ 502 (801)
|.+|..+++|+.|..+++| ++-+.. .+|+.. ++| |-||.||| +.+-+|+..+|+.+.
T Consensus 167 g~~i~ln~eV~~i~~~~dg--~~~~~~-~~g~~~-~~a-k~Vin~AG-l~Ad~la~~~g~~~~ 223 (429)
T COG0579 167 GVELRLNTEVTGIEKQSDG--VFVLNT-SNGEET-LEA-KFVINAAG-LYADPLAQMAGIPED 223 (429)
T ss_pred CCEEEecCeeeEEEEeCCc--eEEEEe-cCCcEE-EEe-eEEEECCc-hhHHHHHHHhCCCcc
Confidence 9999999999999987764 222222 356555 889 47999999 689999999998653
No 46
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.92 E-value=0.53 Score=55.48 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=44.1
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
..+.+++|+.++.|++|+.+++ +++.||.+. .+|..+.+.| |-||||+|.+..
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 3467899999999999998643 689999985 3677788999 589999999875
No 47
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.70 E-value=0.47 Score=55.42 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=44.0
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
...+.+++|++++.|++|+.++ +++++||.+.. ++..+.+.| |.||||+|.++.
T Consensus 143 ~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 143 YLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 3445799999999999999875 35699998764 577778999 589999999874
No 48
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.47 E-value=0.54 Score=55.16 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=42.5
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~ 489 (801)
.+.+++|+.++.|++|+.++ ++++||.+.. ++..+.+.| |-||||+|.++
T Consensus 147 ~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 34689999999999999874 7999998874 466778889 58999999987
No 49
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=90.38 E-value=0.53 Score=55.80 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=43.6
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
..+.|++|+.++.|++|+.+++ +++.||.+. .+|+.+.+.|+ .||||+|.+..
T Consensus 176 a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 176 SLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 4457899999999999998533 689999886 36777888895 79999999864
No 50
>PRK07512 L-aspartate oxidase; Provisional
Probab=90.34 E-value=0.43 Score=55.27 Aligned_cols=53 Identities=26% Similarity=0.462 Sum_probs=42.6
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S 490 (801)
+.++++++|+.++.|++|+.++ ++++||.+...+..+++.|+ .||||+|.+..
T Consensus 146 ~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 146 VRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred HHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECC-EEEEcCCCCcC
Confidence 3345689999999999998764 68999988765666678885 79999999864
No 51
>PRK09077 L-aspartate oxidase; Provisional
Probab=90.34 E-value=0.56 Score=54.70 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=44.5
Q ss_pred ccCCCCeEEeeCceEEEEEeeC----CCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDS----ESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~----~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
+.+++|++|+.++.|++|+.++ ++++++||.+.. +++...+.| |.||||+|.+..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 4456799999999999998764 236899999873 577788888 579999999874
No 52
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.24 E-value=1.8 Score=50.21 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=47.9
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
+.+.+++|+.++.|++|..++ +++.+|++.. +|+..+|.|+ .||+|||+ .+..|+...|+
T Consensus 138 A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 138 AQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence 346689999999999998765 6788998863 4667789995 79999996 57888776664
No 53
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.92 E-value=0.75 Score=54.64 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=40.3
Q ss_pred CeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 440 NLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 440 nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
|++|+.++.|++|+.++ +++.||.+. .++..+.+.|+ .||||+|.++.
T Consensus 165 ~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 49999999999999864 689999876 35777789995 79999998764
No 54
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=89.70 E-value=0.66 Score=55.08 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=43.4
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
.+.|++|+.++.|++|+.+++ +++.||.+.. +|+.+.+.| |.||||+|.++.
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 251 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRA-HSTILATGGYGR 251 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCcc
Confidence 356899999999999998643 6899998863 677888999 479999999875
No 55
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=89.50 E-value=0.77 Score=58.56 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=44.5
Q ss_pred CCCeEEeeCceEEEEEeeCC----C---CeEEEEEEEE----CCEEEEEEeeeEEEecCCCCCCHH
Q psy14643 438 RPNLHISLNSQVTRVLIDSE----S---KKAYGVEFVK----NGKKRIVFARKEIILSAGAINTPH 492 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~----~---~~a~gV~~~~----~g~~~~v~A~k~VILaAGai~Spr 492 (801)
+.+++|+.++.|++|+.+++ + ++|+||++.. +|+...+.| |-||||+|.++.-.
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence 36899999999999998752 2 3899999984 577788999 57999999998743
No 56
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=89.39 E-value=0.77 Score=52.01 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=44.1
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHh
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMH 496 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~ 496 (801)
..++.+++|+.++.|++|+.+.++++++||....++ .++.| |.||||+|.++..+=++.
T Consensus 132 ~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 132 SAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHHHH
Confidence 345678999999999999886423688898764322 57788 479999999887654443
No 57
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=89.15 E-value=0.84 Score=52.58 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=42.0
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S 490 (801)
+.+|++|+.++.|++|+.++ +++.||.+...+...++.| |.||||+|+...
T Consensus 140 ~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 140 NHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred hcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence 34799999999999998764 6899998875555667888 479999999875
No 58
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=89.09 E-value=0.69 Score=55.17 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=43.7
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
..+.+++|+.++.|++|+.++ +++.||.+.. +|..+.+.| |.||||+|.+..
T Consensus 168 ~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 168 AIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 446789999999999999865 7899999873 677788889 579999998764
No 59
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=89.04 E-value=0.4 Score=53.24 Aligned_cols=59 Identities=22% Similarity=0.419 Sum_probs=46.3
Q ss_pred HHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECC-EEEEEEeeeEEEecCCCCC
Q psy14643 429 HAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNG-KKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 429 ~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g-~~~~v~A~k~VILaAGai~ 489 (801)
.+++..+.+++|++|+.++.+.+|+.+++ ..+.||.+...+ +..++.|+ .||||+|.++
T Consensus 137 ~~L~~~v~~~p~I~v~e~~~a~~li~~~~-~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 137 TALLKKVRNRPNITVLEGAEALDLIIEDG-IGVAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred HHHHHHHhcCCCcEEEecchhhhhhhcCC-ceEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 33455566789999999999999999873 246699998543 57889995 7999999764
No 60
>PRK08275 putative oxidoreductase; Provisional
Probab=89.01 E-value=0.77 Score=53.77 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=44.3
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~ 489 (801)
.|.....+.+++|+.++.|++|+.+++ +++.||.+.. +|....+.| |.||||+|...
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence 333434567899999999999998643 6899998763 566778888 47999999875
No 61
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=88.74 E-value=1 Score=52.96 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=43.1
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
+.+.+|++++.++.|++|+.++ +++.||.+. .++....+.| |-||||.|....
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 3344689999999999999865 689999876 3677778889 589999999764
No 62
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=88.63 E-value=1.1 Score=52.73 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=43.0
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
.+.+|++++.++.|++|+.++ +++.||.+.. +|....+.| |.||||+|....
T Consensus 143 ~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 143 LTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred HhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 345789999999999999874 6899998763 677788889 589999999764
No 63
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.46 E-value=2.9 Score=46.94 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=37.7
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCE--EEEEEeeeEEEecCCCCCCHHHHHh
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGK--KRIVFARKEIILSAGAINTPHILMH 496 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~--~~~v~A~k~VILaAGai~SprLLl~ 496 (801)
.+.+.+++|+.++.|++|..++ +.+ .|.+...+. ..+++|+ .||+|+|+ .+..|+..
T Consensus 206 ~a~~~G~~i~~~~~V~~i~~~~--~~~-~v~~~~~~~~~~~~i~a~-~vV~a~G~-~s~~l~~~ 264 (410)
T PRK12409 206 ACARLGVQFRYGQEVTSIKTDG--GGV-VLTVQPSAEHPSRTLEFD-GVVVCAGV-GSRALAAM 264 (410)
T ss_pred HHHhCCCEEEcCCEEEEEEEeC--CEE-EEEEEcCCCCccceEecC-EEEECCCc-ChHHHHHH
Confidence 4456689999999999998654 333 233332221 3467885 69999996 56666543
No 64
>KOG2404|consensus
Probab=87.81 E-value=0.51 Score=49.26 Aligned_cols=48 Identities=29% Similarity=0.537 Sum_probs=39.9
Q ss_pred CeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCC
Q psy14643 440 NLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 440 nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~S 490 (801)
-++|+++++|++|+.+. +++.||+|.. +|++..+.+. .||||.|.+.-
T Consensus 159 ~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 47999999999999443 7899999994 5777777775 69999999875
No 65
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=87.78 E-value=0.99 Score=53.08 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=42.6
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
..+.+++|+.++.|++|+.++ ++++||.+.. +++...+.| |.||||+|....
T Consensus 139 ~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 139 CLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 334589999999999999874 7899998863 566778889 589999999864
No 66
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.60 E-value=1.3 Score=52.31 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=44.2
Q ss_pred cccCCCCeEEeeCceEEEEEeeCC--CCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSE--SKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~--~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
....+.|++|+.++.|++|+.+++ ++++.||.+. .+++.+.+.| |.||||+|....
T Consensus 148 ~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 148 QNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 334467899999999999998652 2689999875 3577778889 579999999874
No 67
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=87.38 E-value=1.8 Score=49.59 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=46.4
Q ss_pred HHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCC
Q psy14643 429 HAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINTPHILMHSGVG 500 (801)
Q Consensus 429 ~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG 500 (801)
.+++..+.+.++++|+.++.|+.|..+++++ . .|.+. ..++..++.|+ .||+|||+ .+-+|+..+|+.
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w-~v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLERLSDGG-W-EVTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-E-EEEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 3455444456689999999999998763322 2 23332 23434468885 79999997 788899999874
No 68
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=87.19 E-value=1.3 Score=52.47 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=41.1
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~ 489 (801)
.+.+|++|+.++.|++|+.++ ++++||.+. .++....+.| |.||||+|.+.
T Consensus 143 ~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 143 KKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred HhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 344579999999999998865 689999764 3566678888 47999999875
No 69
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.19 E-value=1.4 Score=51.99 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=42.3
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
.+..+++|+.++.|++|+.++ +++.||.+.. +++...+.| |.||||+|....
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAGR 201 (577)
T ss_pred HhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhcc
Confidence 344789999999999999865 6899998763 566678889 479999999863
No 70
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=86.96 E-value=0.45 Score=47.44 Aligned_cols=62 Identities=27% Similarity=0.462 Sum_probs=38.4
Q ss_pred HhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhC
Q psy14643 430 AYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSG 498 (801)
Q Consensus 430 ~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SG 498 (801)
.||....++.+++|+.+++|++|..++++ .-|++. ++ .++.|+ .||||.|....|+++..-|
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~~---w~v~~~-~~--~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDGDG---WTVTTR-DG--RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEETTT---EEEEET-TS---EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEeccE---EEEEEE-ec--ceeeee-eEEEeeeccCCCCcccccc
Confidence 37777777778889999999999998752 334443 34 567785 7999999999999886544
No 71
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.78 E-value=1.4 Score=52.03 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
...+++|+.++.|++|+.+++ +++.||.+. .++....+.| |-||||+|....
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 457899999999999998643 689999886 3566778888 579999999874
No 72
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=86.39 E-value=2.1 Score=49.17 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=44.7
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINTPHILMHSGVG 500 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG 500 (801)
+...+.+.++++|+.++.|+.|..+++ +++ .|.+. ..|+..++.|+ .||+|||+ .+.+|+..+|+.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDD-GSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCC-CCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 333333344699999999999987554 222 23332 23544568895 79999997 688888888874
No 73
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.03 E-value=1.8 Score=51.14 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=40.9
Q ss_pred CCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCC
Q psy14643 439 PNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 439 ~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~S 490 (801)
.+++|+.++.|++|+.+++ +++.||.+.. +++.+.+.| |.||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 3589999999999998643 6899999874 456677888 589999999875
No 74
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=86.02 E-value=1.9 Score=49.50 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=42.7
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINTPHILMHSGVG 500 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG 500 (801)
.+.+++|+.++.|++|..++++ .+ .|.+. ..++..++.|+ .||+|||+ .+.+|+..+|+.
T Consensus 189 ~~~Gv~i~~~t~V~~i~~~~~~-~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 189 VQNGTTIRFGHEVRNLKRQSDG-SW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HhCCCEEEeCCEEEEEEEcCCC-eE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCC
Confidence 4458999999999999875432 22 23332 23445578895 79999996 678888888874
No 75
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=85.89 E-value=1.5 Score=51.65 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=41.3
Q ss_pred CCCeEEeeCceEEEEEeeCC-CCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSE-SKKAYGVEFV--KNGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~-~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~ 489 (801)
..+.+|+.++.|++|+.+++ ++++.||.+. .+++.+.+.| |.||||+|.+.
T Consensus 138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 191 (614)
T TIGR02061 138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV 191 (614)
T ss_pred hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence 34579999999999998653 2689999886 3577788999 47999999985
No 76
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=85.29 E-value=1.7 Score=48.38 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=45.1
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhh
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHS 497 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~S 497 (801)
.++.+.+++.+++|+++.+++ +++++|... +++..++.|+ .||||+|+.-|..|+...
T Consensus 273 ~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~-~g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 273 FEQLGGVMLPGDRVLRAEFEG--NRVTRIHTR-NHRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHCCCEEEECcEEEEEEeeC--CeEEEEEec-CCccceEECC-EEEEccCCCcCHHHHhhc
Confidence 345678999999999999876 578776653 3334578896 699999999999986654
No 77
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=84.35 E-value=2.9 Score=45.19 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=36.9
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
.+...|++++.++.|+.|..++ +++++|... +| +++|+ .||+|+|+ .|++|
T Consensus 146 ~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~-~g---~~~a~-~vV~a~G~-~~~~l 196 (337)
T TIGR02352 146 ALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTP-SG---DVQAD-QVVLAAGA-WAGEL 196 (337)
T ss_pred HHHHcCCEEEccceEEEEEeeC--CEEEEEEcC-CC---EEECC-EEEEcCCh-hhhhc
Confidence 3446689999999999998754 567777542 23 57885 69999997 44443
No 78
>PRK08071 L-aspartate oxidase; Provisional
Probab=83.92 E-value=1.7 Score=50.40 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=41.2
Q ss_pred CCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCC
Q psy14643 439 PNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 439 ~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~S 490 (801)
.+++|+.++.|++|+.++ +++.||.+.. +++.+.+.| |.||||+|.+..
T Consensus 142 ~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 589999999999998764 6899998874 566678888 479999999875
No 79
>PRK07804 L-aspartate oxidase; Provisional
Probab=83.80 E-value=2.1 Score=49.98 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=41.5
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE-----ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV-----KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~-----~~g~~~~v~A~k~VILaAGai~S 490 (801)
..++.+++|+.++.|++|+.+++ +++.||.+. .++....+.| |.||||+|....
T Consensus 153 ~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 153 AVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred HHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 34455699999999999998653 589999886 2333567888 589999999763
No 80
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=83.40 E-value=2 Score=51.09 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=47.2
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHhhC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMHSG 498 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~SG 498 (801)
+.+.+++|+.++.|++|..+++++++++|++.. +++.+++.|+ .||+|||+. +.+|+...|
T Consensus 242 A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 242 AALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence 346689999999999998864235788998863 4666788995 799999975 777777664
No 81
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=82.24 E-value=2.6 Score=47.27 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=44.1
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
.|....++.+++|+++++|+++..++ ++++.|. ..+++...+.|+ .||||+|.+.+.-|
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL 322 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEE-eeCCceEEEECC-EEEEeCCCcccCce
Confidence 34445556789999999999998765 4566655 345667788996 79999998766655
No 82
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=81.60 E-value=3.2 Score=47.70 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=39.9
Q ss_pred CeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCC
Q psy14643 440 NLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVG 500 (801)
Q Consensus 440 nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG 500 (801)
+++|+.++.|+.|..+++ ....|... +| +++|+ .||+|||+ .|.+|+..+|++
T Consensus 231 ~v~i~~~t~V~~I~~~~~--~~~~V~T~-~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~ 283 (497)
T PTZ00383 231 KISINLNTEVLNIERSND--SLYKIHTN-RG---EIRAR-FVVVSACG-YSLLFAQKMGYG 283 (497)
T ss_pred CEEEEeCCEEEEEEecCC--CeEEEEEC-CC---EEEeC-EEEECcCh-hHHHHHHHhCCC
Confidence 389999999999987642 34444332 33 58895 69999997 589999999975
No 83
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.78 E-value=3.2 Score=51.60 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=41.5
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~S 490 (801)
+.++++.+++.+++|+.++ +++.||.+. .+|+.+.+.| |.||||+|.++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 3589999999999998764 689999876 3677888999 589999999863
No 84
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=80.57 E-value=2.9 Score=47.81 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=61.6
Q ss_pred cCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCCHHHHHhh
Q psy14643 420 RNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINTPHILMHS 497 (801)
Q Consensus 420 ~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~SprLLl~S 497 (801)
.+.+|....++- .+...+.+|++.+.|+++..++ + +.||++. ..|++++++|+ .||-|||. .+-+|+...
T Consensus 161 vddaRLv~~~a~---~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~-~VVNAaGp-W~d~i~~~~ 232 (532)
T COG0578 161 VDDARLVAANAR---DAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRAR-AVVNAAGP-WVDEILEMA 232 (532)
T ss_pred echHHHHHHHHH---HHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcC-EEEECCCc-cHHHHHHhh
Confidence 345565444321 1345689999999999999877 4 9999999 35899999995 79999996 577888877
Q ss_pred CCCChh---hhhhCCCceeec
Q psy14643 498 GVGPRE---HLESLKIKVERD 515 (801)
Q Consensus 498 GIG~~~---~L~~~Gi~~v~~ 515 (801)
+..++. .--..|+-+|.+
T Consensus 233 ~~~~~~~~~vr~skGsHlVv~ 253 (532)
T COG0578 233 GLEQSPHIGVRPSKGSHLVVD 253 (532)
T ss_pred cccCCCCccceeccceEEEec
Confidence 655432 222345555544
No 85
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=79.97 E-value=3.7 Score=47.82 Aligned_cols=87 Identities=22% Similarity=0.140 Sum_probs=57.5
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCC-----CHHHHHhhCCCChhhhhh
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAIN-----TPHILMHSGVGPREHLES 507 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~-----SprLLl~SGIG~~~~L~~ 507 (801)
+.+..+++++.+..|++|+.+++ +.+.||... .+++.+.++| |.||||.|..+ |+-.....|-|- ...-+
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~ 224 (562)
T COG1053 148 LLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYR 224 (562)
T ss_pred HHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHH-HHHHh
Confidence 34447789999999999998865 348888777 4688888888 57999999988 333333322221 12234
Q ss_pred CCCceeecCCccccccccccc
Q psy14643 508 LKIKVERDLPVGENLQDHITM 528 (801)
Q Consensus 508 ~Gi~~v~~~pVGrnl~dH~~~ 528 (801)
+|.+ .. .....|-||..
T Consensus 225 aGa~-l~---dme~~Q~hpt~ 241 (562)
T COG1053 225 AGAP-LI---DMEFVQFHPTG 241 (562)
T ss_pred cCCc-cc---CCCccccccce
Confidence 4544 11 45566777764
No 86
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=77.84 E-value=0.71 Score=52.19 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
.|...+...|++|+.++.|..|+.++ +++++|.+...+...+|+| |.||-|.| .-.|+-++|.
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A-~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRA-KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--ccccccccccccccccccc-cccccccc---cccccccccc
Confidence 44455567899999999999999976 7899999985445889999 48999999 3578888874
No 87
>PLN02661 Putative thiazole synthesis
Probab=77.39 E-value=3.9 Score=44.40 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=41.7
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE-----EC--C----EEEEEEeeeEEEecCCCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV-----KN--G----KKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~-----~~--g----~~~~v~A~k~VILaAGai~ 489 (801)
++..+.+++|++|+.++.|+.|+.++ +++.||.+. .+ + ....++|+ .||||+|.-+
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak-aVVlATGh~g 244 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAK-VVVSSCGHDG 244 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECC-EEEEcCCCCC
Confidence 44445567899999999999999875 689999863 11 1 23578894 7999999543
No 88
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=76.14 E-value=4.4 Score=45.32 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCcccceeecccccCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEE
Q psy14643 387 DAFLESSKYVNQSTI-DYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVE 465 (801)
Q Consensus 387 ~~~~~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~ 465 (801)
+.+.+-++++|++.. ..++ .-+ + ....-.+...+++ ...++.+++|+++++|+.|..++ +.+..|+
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~g------r~f-P---~s~~a~~Vv~~L~-~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~ 146 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDG------RVF-P---KSDKASSVVDALL-EELKRLGVEIHFNTRVKSIEKKE--DGVFGVK 146 (409)
T ss_dssp HHHHHHHHHTT--EEE-STT------EEE-E---TT--HHHHHHHHH-HHHHHHT-EEE-S--EEEEEEET--TEEEEEE
T ss_pred HHHHHHHHhcCCeEEEcCCC------EEC-C---CCCcHHHHHHHHH-HHHHHcCCEEEeCCEeeeeeecC--CceeEee
Confidence 456677778898763 2222 111 1 1222233444444 34456799999999999999877 4566666
Q ss_pred EEECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 466 FVKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 466 ~~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
.. ++ .++.|+ .||||+|..--|++
T Consensus 147 ~~-~~--~~~~a~-~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 147 TK-NG--GEYEAD-AVILATGGKSYPKT 170 (409)
T ss_dssp ET-TT--EEEEES-EEEE----SSSGGG
T ss_pred cc-Cc--ccccCC-EEEEecCCCCcccc
Confidence 62 33 367785 69999999888873
No 89
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=74.96 E-value=8.9 Score=42.30 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEE
Q psy14643 387 DAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEF 466 (801)
Q Consensus 387 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~ 466 (801)
+.+.+-++++|++...-.+ |.-+ + ....-.+...+++ ..+++.|++|++++.|+.| ++ + ...|.+
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~-----grvf-P---~S~~A~sVv~~L~-~~l~~~gV~i~~~~~V~~i--~~--~-~~~v~~ 121 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSS-----GRVF-P---VEMKAAPLLRAWL-KRLAEQGVQFHTRHRWIGW--QG--G-TLRFET 121 (376)
T ss_pred HHHHHHHHHCCCceEECCC-----CEEC-C---CCCCHHHHHHHHH-HHHHHCCCEEEeCCEEEEE--eC--C-cEEEEE
Confidence 4566667788997632111 2111 1 1222233444344 4566889999999999999 33 2 134444
Q ss_pred EECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 467 VKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 467 ~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
. .....++|+ .||||+|..-.|++
T Consensus 122 ~--~~~~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 122 P--DGQSTIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred C--CCceEEecC-EEEEcCCCcccccc
Confidence 2 222357885 69999999877764
No 90
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=74.40 E-value=5.8 Score=43.75 Aligned_cols=48 Identities=27% Similarity=0.492 Sum_probs=36.3
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~ 489 (801)
+.+.+|++|+ ..+|+.|..++ +++.||... +|. .+.++ .||||+|++.
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~-~g~--~~~a~-~vVlaTGtfl 152 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVEN--GKVKGVVTK-DGE--EIEAD-AVVLATGTFL 152 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEECT--TEEEEEEET-TSE--EEEEC-EEEE-TTTGB
T ss_pred HhcCCCeEEE-EcccceEEecC--CeEEEEEeC-CCC--EEecC-EEEEeccccc
Confidence 3467999997 67999999877 789998775 455 57784 7999999943
No 91
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=74.23 E-value=4.2 Score=42.41 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=38.6
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-----C---CEEEEEEeeeEEEecCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-----N---GKKRIVFARKEIILSAGAI 488 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-----~---g~~~~v~A~k~VILaAGai 488 (801)
+...|++|+.++.|+.|..+++ +++.||.+.. . ....+++|+ .||+|+|.-
T Consensus 114 A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~ 172 (257)
T PRK04176 114 AIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHD 172 (257)
T ss_pred HHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCC
Confidence 3456899999999999988653 4788988751 1 134689995 799999953
No 92
>PRK06185 hypothetical protein; Provisional
Probab=73.55 E-value=8.9 Score=42.84 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=43.1
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVG 500 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG 500 (801)
+.+.+|++++.+++|+.|..++ +++++|.+...+...++.|+ .||.|.|+- |. +-...||.
T Consensus 118 ~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~-~vI~AdG~~-S~-vr~~~gi~ 178 (407)
T PRK06185 118 ASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRAD-LVVGADGRH-SR-VRALAGLE 178 (407)
T ss_pred HhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeC-EEEECCCCc-hH-HHHHcCCC
Confidence 3345799999999999998875 56788887743334678895 788888864 43 43444553
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=71.01 E-value=10 Score=41.53 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcccceeecccccCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEE
Q psy14643 386 VDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVE 465 (801)
Q Consensus 386 ~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~ 465 (801)
.+.|..-++.+|++...-.. | +..|....-.+-..+++. ..++.|++|++++.|.+|..++. +-.
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~-----G----r~Fp~sdkA~~Iv~~ll~-~~~~~gV~i~~~~~v~~v~~~~~-----~f~ 145 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDL-----G----RMFPDSDKASPIVDALLK-ELEALGVTIRTRSRVSSVEKDDS-----GFR 145 (408)
T ss_pred HHHHHHHHHhcCCeeEEccC-----c----eecCCccchHHHHHHHHH-HHHHcCcEEEecceEEeEEecCc-----eEE
Confidence 35677778889988743222 1 122333333344555554 45678999999999999987652 222
Q ss_pred EE-ECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 466 FV-KNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 466 ~~-~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
+. .+|+ +|+++ .+|||.|..--|++
T Consensus 146 l~t~~g~--~i~~d-~lilAtGG~S~P~l 171 (408)
T COG2081 146 LDTSSGE--TVKCD-SLILATGGKSWPKL 171 (408)
T ss_pred EEcCCCC--EEEcc-EEEEecCCcCCCCC
Confidence 23 3444 78886 59999998887863
No 94
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=70.15 E-value=2.9 Score=47.70 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=32.5
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
++.+.+++|+.++.|+.|.. + + ...|+. .+| ++.|+ .||+|+|+. |++|
T Consensus 192 ~a~~~Gv~i~~~t~V~~i~~-~--~-~~~v~t-~~g---~v~A~-~VV~Atga~-s~~l 240 (460)
T TIGR03329 192 VALELGVEIHENTPMTGLEE-G--Q-PAVVRT-PDG---QVTAD-KVVLALNAW-MASH 240 (460)
T ss_pred HHHHcCCEEECCCeEEEEee-C--C-ceEEEe-CCc---EEECC-EEEEccccc-cccc
Confidence 34567899999999999963 2 2 223332 234 47885 699999985 3443
No 95
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=69.00 E-value=5.2 Score=46.12 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=41.9
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
..++.+.+|+.++.|++|..++ +++.+|.+. +|+ ++.|+ .||+|+|...+-+.|+
T Consensus 238 ~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~-~g~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 238 GLEKHGGQIRYRARVTKIILEN--GKAVGVKLA-DGE--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHCCCEEEeCCeeeEEEecC--CcEEEEEeC-CCC--EEEcC-EEEECCChHHHHHHhC
Confidence 4456789999999999999875 578888775 343 46785 6999999877665554
No 96
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=66.76 E-value=6.7 Score=45.21 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=39.9
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEEC--CEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN--GKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~--g~~~~v~A~k~VILaAGai~SprL 493 (801)
.+..+.+|++++.|++|+.++ +++++|.+..+ +...++.|+ .||+++..-.+.+|
T Consensus 242 ~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~l 298 (492)
T TIGR02733 242 LKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLEL 298 (492)
T ss_pred HHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHh
Confidence 345688999999999999876 57888887632 223467885 68888887555443
No 97
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=65.72 E-value=7 Score=44.82 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCCeEEeeCceEEEEEeeCC--CC-eEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHH
Q psy14643 438 RPNLHISLNSQVTRVLIDSE--SK-KAYGVEFVKNGKKRIVFARKEIILSAGAINTPHIL 494 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~--~~-~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLL 494 (801)
+.+.+|++++.|++|+.+++ +. ++++|++...+...++.|+ .||+|..+-...+||
T Consensus 231 ~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 231 ARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhC
Confidence 46789999999999998752 23 4888888532112347786 699999987777765
No 98
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=63.67 E-value=14 Score=41.45 Aligned_cols=53 Identities=17% Similarity=0.380 Sum_probs=37.2
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
...+.+++|+.++.|++|..++ +++++|+.. +. ++.++ .||+|+|+. +..|+.
T Consensus 210 ~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~--~~--~~~a~-~VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 210 MAEQLGVKFRFNTPVDGLLVEG--GRITGVQTG--GG--VITAD-AYVVALGSY-STALLK 262 (416)
T ss_pred HHHHCCCEEEcCCEEEEEEecC--CEEEEEEeC--Cc--EEeCC-EEEECCCcc-hHHHHH
Confidence 3456789999999999998765 455555432 22 57785 699999974 555544
No 99
>PRK08401 L-aspartate oxidase; Provisional
Probab=63.26 E-value=37 Score=38.83 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=36.3
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S 490 (801)
....+.+++++.+ .|++|+.++ ++++||.. ++. .+.++ .||||+|+...
T Consensus 128 ~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~--~g~--~i~a~-~VVLATGG~~~ 176 (466)
T PRK08401 128 KHARELGVNFIRG-FAEELAIKN--GKAYGVFL--DGE--LLKFD-ATVIATGGFSG 176 (466)
T ss_pred HHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE--CCE--EEEeC-eEEECCCcCcC
Confidence 3345678999876 798887654 67888876 343 57784 79999999865
No 100
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=61.41 E-value=12 Score=38.90 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=44.6
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-----CC---EEEEEEeeeEEEecCCC-CCCHHHHHhh
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-----NG---KKRIVFARKEIILSAGA-INTPHILMHS 497 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-----~g---~~~~v~A~k~VILaAGa-i~SprLLl~S 497 (801)
+|.....+.+++|+.++.|+.|..+++..++.||.+.. .+ ...+++| |-||.|+|. =...+.|.+-
T Consensus 105 ~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 105 TLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecCCchHHHHHHHH
Confidence 33333334579999999999999876434799998741 12 3568999 589999993 2334454443
No 101
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=61.18 E-value=13 Score=41.50 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=39.0
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSG 498 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SG 498 (801)
.+.+.+++++.++.|+.|..+++ +++.+|+.. +| ++.++ .||+|||+- ++.++...|
T Consensus 192 ~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~-~g---~i~a~-~vVvaagg~-~~~l~~~~g 248 (407)
T TIGR01373 192 GADRRGVDIIQNCEVTGFIRRDG-GRVIGVETT-RG---FIGAK-KVGVAVAGH-SSVVAAMAG 248 (407)
T ss_pred HHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeC-Cc---eEECC-EEEECCChh-hHHHHHHcC
Confidence 34466899999999999976432 456666543 34 57885 699999984 555654444
No 102
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=60.75 E-value=23 Score=37.65 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=54.8
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE---E----CC--------EEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV---K----NG--------KKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~---~----~g--------~~~~v~A~k~VILaAGai~SprLLl 495 (801)
-+..+.+++.+++...++|.+|...+ ++++||.-. . .| ..+++.|. .||++.|.|+--.=|.
T Consensus 158 ~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhelV 234 (552)
T COG3573 158 RLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHELV 234 (552)
T ss_pred HHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHHHH
Confidence 34445668899999999999999876 789998643 1 12 13678885 7999999887665555
Q ss_pred hh-----CCCChhhhhhCCCceeec
Q psy14643 496 HS-----GVGPREHLESLKIKVERD 515 (801)
Q Consensus 496 ~S-----GIG~~~~L~~~Gi~~v~~ 515 (801)
+- .+|+.-+.--.|+|-.+|
T Consensus 235 RrnWP~eRlG~~Pe~m~~GVPaHVD 259 (552)
T COG3573 235 RRNWPTERLGRAPEQMLSGVPAHVD 259 (552)
T ss_pred HhcCchhhcCCChHHHhcCCccccc
Confidence 53 344433333356665555
No 103
>KOG0042|consensus
Probab=60.31 E-value=5.1 Score=45.18 Aligned_cols=84 Identities=20% Similarity=0.206 Sum_probs=60.2
Q ss_pred CCcccceeecccccCCeechhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEec
Q psy14643 407 ENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILS 484 (801)
Q Consensus 407 ~~~~g~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILa 484 (801)
.+.+|...+--+..+.+|.....+.- +.+.+++++-..+|.+++.|++ +++.|++++. .|++++|+| |.||=|
T Consensus 208 ~~L~Ga~VYyDGQ~nDaRmnl~vAlT---A~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~A-k~VVNA 282 (680)
T KOG0042|consen 208 DNLKGAMVYYDGQHNDARMNLAVALT---AARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRA-KVVVNA 282 (680)
T ss_pred cCceeEEEEecCCCchHHHHHHHHHH---HHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEE-EEEEeC
Confidence 34455444444455666665554322 3477899999999999999887 4899999984 699999999 589999
Q ss_pred CCCCCCHHHHH
Q psy14643 485 AGAINTPHILM 495 (801)
Q Consensus 485 AGai~SprLLl 495 (801)
+|-+.-.-..|
T Consensus 283 TGpfsDsIr~M 293 (680)
T KOG0042|consen 283 TGPFSDSIRKM 293 (680)
T ss_pred CCCccHHHHhh
Confidence 99875444444
No 104
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=60.07 E-value=20 Score=40.44 Aligned_cols=64 Identities=19% Similarity=0.377 Sum_probs=42.9
Q ss_pred hhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 427 SYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 427 ~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
....+|...+.+.+++|++++.|++|+.++ +++++|. .++. ++.|+ .||+|.|+ +..|....|+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~--~~g~--~i~A~-~VI~A~G~--~s~l~~~lgl 172 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVE--ADGD--VIEAK-TVILADGV--NSILAEKLGM 172 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEE--cCCc--EEECC-EEEEEeCC--CHHHHHHcCC
Confidence 344566555566799999999999998765 4555553 2343 57885 79999997 3344444443
No 105
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=59.18 E-value=18 Score=41.89 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=41.3
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHh
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMH 496 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~ 496 (801)
+.+.+++++.++.|++|..++ + ..+|.+.. +|+..++.|+ .||+|+|+ .+.+|+-.
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~ 222 (508)
T PRK12266 165 AAERGAEILTRTRVVSARREN--G-LWHVTLEDTATGKRYTVRAR-ALVNAAGP-WVKQFLDD 222 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEeC--C-EEEEEEEEcCCCCEEEEEcC-EEEECCCc-cHHHHHhh
Confidence 345689999999999998754 3 34666653 4667889995 79999997 46666543
No 106
>KOG2852|consensus
Probab=58.67 E-value=12 Score=39.10 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=51.4
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCHHHHHhhCCCChhhhhhCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLK 509 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~SprLLl~SGIG~~~~L~~~G 509 (801)
.|..+.++.|++++.+. |..|. |+ ..|+.+|.... .+..+...+. .||||||- .|++||..-+| ..|+.+-
T Consensus 153 i~sea~k~~~V~lv~Gk-v~ev~-dE-k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI---sglrihs 224 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFGK-VKEVS-DE-KHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI---SGLRIHS 224 (380)
T ss_pred HHHHHHhhcCeEEEEee-eEEee-cc-cccccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc---ceeeeee
Confidence 45567889999999994 66675 33 26788887763 2345566664 69999996 69999998776 4555555
Q ss_pred Cc
Q psy14643 510 IK 511 (801)
Q Consensus 510 i~ 511 (801)
|.
T Consensus 225 I~ 226 (380)
T KOG2852|consen 225 IT 226 (380)
T ss_pred EE
Confidence 43
No 107
>PLN02487 zeta-carotene desaturase
Probab=58.21 E-value=15 Score=43.03 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=40.6
Q ss_pred CCCCeEEeeCceEEEEEeeCC-CC--eEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHH
Q psy14643 437 NRPNLHISLNSQVTRVLIDSE-SK--KAYGVEFVKNGKKRIVFARKEIILSAGAINTPHIL 494 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~-~~--~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLL 494 (801)
++.+.+|++++.|++|+.+.+ ++ +++||++..++....+.++ .||+|++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 466889999999999999853 22 5899988533344457785 699988865444443
No 108
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=56.36 E-value=28 Score=38.68 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=39.5
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
...+.+++++.++.|++|..++ +.+ .|+. .++ ++.++ .||+|+|+ .++.++...|+
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~-~~g---~i~ad-~vV~A~G~-~s~~l~~~~g~ 213 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHA--NGV-VVRT-TQG---EYEAR-TLINCAGL-MSDRLAKMAGL 213 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecC--CeE-EEEE-CCC---EEEeC-EEEECCCc-chHHHHHHhCC
Confidence 3345689999999999998654 322 3333 233 57885 69999997 67888877765
No 109
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=53.91 E-value=17 Score=39.55 Aligned_cols=61 Identities=23% Similarity=0.408 Sum_probs=36.4
Q ss_pred HhhccccCCCCeEEeeCceEEEEEeeCCCCe-EEEEEEE-ECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 430 AYIEPVRNRPNLHISLNSQVTRVLIDSESKK-AYGVEFV-KNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 430 ~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~-a~gV~~~-~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
.|+.-++++-.-.+..+++|++|..+.+++. ...|+.. .+|...++.|+ .||||.| .+|.|
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar-~vVla~G--~~P~i 161 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR-NVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES-EEEE------EE--
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC-eEEECcC--CCCCC
Confidence 3665555554444888999999998775432 3444443 25778899995 6999999 66665
No 110
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=52.73 E-value=13 Score=42.23 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=35.5
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEEC-C-EEEEEEeeeEEEecCCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVKN-G-KKRIVFARKEIILSAGA 487 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~-g-~~~~v~A~k~VILaAGa 487 (801)
..+.+|++++.|++|..+++ ++++||++..+ + ..+++.|+ .||+|+..
T Consensus 225 ~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 34789999999999987554 57889988632 2 23367885 69998864
No 111
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=51.94 E-value=36 Score=39.49 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHhh
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMHS 497 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~S 497 (801)
+.+|+++++++.|++|.-++ +++++|++.. +++..++.++ .|++|.|..-++.+|..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 35799999999999997543 5788888873 4666789996 799999999888877544
No 112
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=51.12 E-value=34 Score=39.59 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEEC-CEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN-GKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~-g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
+.+.+++++.++.|+.|..++ + ..+|.+... |+..++.|+ .||.|+|+. +.+|+-
T Consensus 165 a~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 165 AAERGATILTRTRCVSARREG--G-LWRVETRDADGETRTVRAR-ALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHCCCEEecCcEEEEEEEcC--C-EEEEEEEeCCCCEEEEEec-EEEECCCcc-HHHHHh
Confidence 346689999999999998764 3 345665532 667789995 799999964 667655
No 113
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=50.10 E-value=46 Score=35.01 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=43.0
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHhh
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMHS 497 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~S 497 (801)
++.++++++++.|++|.-+ +++.+|++.. .++..++.++ .||+|.|...++.+|..+
T Consensus 188 ~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 188 KNPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred hCCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 3459999999999999743 2567777653 4666788886 799999987777676655
No 114
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=48.85 E-value=15 Score=40.74 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=34.7
Q ss_pred CcccCCCCeeeccCCcEEe-eccCCCCCCCCCChHHHHHH----HHHHHHHHHhhhcc
Q psy14643 741 TTVVDNELRVHGIKNLRVA-DASVMPILIAAHPMAPIYMI----GEKCADMIKDTWSQ 793 (801)
Q Consensus 741 ~~VVD~~~rV~G~~NL~V~-DaSvfP~~~~~NPtlTi~Al----A~R~Ad~I~~~~~~ 793 (801)
.=+||+++++-|++|+|++ |++.++.. +|.-++.-+ |+.+|..|++++..
T Consensus 279 rl~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 279 RLVVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CEEeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999987 66667755 444344444 44556666666654
No 115
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=48.21 E-value=31 Score=37.93 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=36.3
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSG 498 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SG 498 (801)
.+++.+++++.++.|++|..++ +.+ .|+. .++ ++.++ .||+|+|+. +.+|+..-|
T Consensus 154 ~~~~~g~~~~~~~~V~~i~~~~--~~~-~v~~-~~~---~i~a~-~vV~aaG~~-~~~l~~~~g 208 (380)
T TIGR01377 154 LAEAHGATVRDGTKVVEIEPTE--LLV-TVKT-TKG---SYQAN-KLVVTAGAW-TSKLLSPLG 208 (380)
T ss_pred HHHHcCCEEECCCeEEEEEecC--CeE-EEEe-CCC---EEEeC-EEEEecCcc-hHHHhhhcc
Confidence 3445689999999999998654 333 2432 223 57785 699999984 455554434
No 116
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=46.91 E-value=27 Score=41.00 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=36.0
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~ 489 (801)
.+.+|++|+ .+.|+.|..++ +++.||... +| ..+.|+ .||+|+|+.-
T Consensus 111 ~~~~nV~I~-q~~V~~Li~e~--grV~GV~t~-dG--~~I~Ak-~VIlATGTFL 157 (618)
T PRK05192 111 ENQPNLDLF-QGEVEDLIVEN--GRVVGVVTQ-DG--LEFRAK-AVVLTTGTFL 157 (618)
T ss_pred HcCCCcEEE-EeEEEEEEecC--CEEEEEEEC-CC--CEEECC-EEEEeeCcch
Confidence 456799985 66799998875 678898875 34 368885 7999999853
No 117
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=45.93 E-value=36 Score=38.93 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=42.8
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-----------CCEEEEEEeeeEEEecCCCCCC-HHHHHhhCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVK-----------NGKKRIVFARKEIILSAGAINT-PHILMHSGV 499 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-----------~g~~~~v~A~k~VILaAGai~S-prLLl~SGI 499 (801)
..++++++++.+++|.-+ ++++++|++.. .+...++.++ .||+|.|..-+ ..||...|+
T Consensus 341 ~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence 568999999999999643 36899988751 2456789996 79999995543 446555554
No 118
>KOG4254|consensus
Probab=45.60 E-value=14 Score=40.87 Aligned_cols=56 Identities=29% Similarity=0.344 Sum_probs=41.0
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
+.+++.+.+|.++++|.+|+.|. ++|.||.+. +|+ ++.+ |.||=-|+-..|=-=|+
T Consensus 272 ~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~-dG~--ev~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 272 EGAKRAGAEIFTKATVQSILLDS--GKAVGVRLA-DGT--EVRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHhccceeeehhhhhheeccC--CeEEEEEec-CCc--EEEe-eeeecCCchHHHHHHhC
Confidence 56678899999999999999998 789999998 464 3455 54444466555543333
No 119
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=44.70 E-value=55 Score=37.23 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=42.9
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--------C---------CEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--------N---------GKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--------~---------g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
...|+++++++.+.+|.-+++ +++++|++.. + +...++.++ .||+|.|-.-...+|..+|+
T Consensus 320 ~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D-~Vi~AiG~~p~~~~l~~~gl 397 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEAD-AVIVAIGNGSNPIMAETTRL 397 (449)
T ss_pred HhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECC-EEEECCCCCCCchhhhccCc
Confidence 467999999999999975433 6788888751 1 234578896 79999997555544443443
No 120
>PRK07208 hypothetical protein; Provisional
Probab=44.37 E-value=30 Score=39.57 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=36.6
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~SprL 493 (801)
..+.+|++++.|++|..+++ +.+++|.+.. +|+..++.|+ .||++.-.-...++
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~ 284 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAA 284 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHh
Confidence 45789999999999998764 3455555542 4655678885 68887665333333
No 121
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=44.08 E-value=49 Score=36.95 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=39.2
Q ss_pred hhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCC
Q psy14643 427 SYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 427 ~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~ 489 (801)
....++..+.+.+|++++.+++|++|..+++ . ..|.+..++...+++|+ .||.|-|+-.
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~-~~v~~~~~~~~~~i~ad-lvIgADG~~S 181 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQD--A-ATVTLEIEGKQQTLQSK-LVVAADGARS 181 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e-eEEEEccCCcceEEeee-EEEEeCCCCc
Confidence 3333444344557999999999999987653 2 23555444555678994 7888988643
No 122
>PLN02985 squalene monooxygenase
Probab=43.72 E-value=51 Score=38.24 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=40.7
Q ss_pred HHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCHH
Q psy14643 429 HAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTPH 492 (801)
Q Consensus 429 ~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~Spr 492 (801)
..++..+.+.+|+++..+ +|+.+..++ +.+.||++.. +|++.++.|+ -||.|-|.--.-|
T Consensus 151 ~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~Ad-LVVgADG~~S~vR 211 (514)
T PLN02985 151 QRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAP-LTVVCDGCYSNLR 211 (514)
T ss_pred HHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECC-EEEECCCCchHHH
Confidence 334433445679999865 677776554 5688998873 5777788885 7888888644333
No 123
>PRK10262 thioredoxin reductase; Provisional
Probab=43.46 E-value=92 Score=33.39 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=44.9
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEEC---CEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN---GKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~---g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
..++..++++++++.|++|.-++ .++.+|++... +...++.++ .||+|.|..-...|+ ++++
T Consensus 193 ~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 193 DKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred hhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hccc
Confidence 34557799999999999996433 45778887632 345678886 799999987777654 4444
No 124
>PRK06126 hypothetical protein; Provisional
Probab=42.50 E-value=56 Score=38.14 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=35.7
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCC
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAI 488 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai 488 (801)
.+.+|++|+.+++|++|..+++ .++ |.+. .+|+..+++++ .||.|-|+-
T Consensus 137 ~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~~~~~g~~~~i~ad-~vVgADG~~ 187 (545)
T PRK06126 137 AAQPGVTLRYGHRLTDFEQDAD--GVT-ATVEDLDGGESLTIRAD-YLVGCDGAR 187 (545)
T ss_pred HhCCCceEEeccEEEEEEECCC--eEE-EEEEECCCCcEEEEEEE-EEEecCCcc
Confidence 3457999999999999987763 344 4443 34667789994 788888863
No 125
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=42.48 E-value=45 Score=36.59 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=33.8
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHH
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHIL 494 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLL 494 (801)
..+.+++++.++.|++|..++ +. +.+..++. ++.++ .||+|+|+. +..|+
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~--~~---~~v~~~~g--~~~a~-~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADG--DG---VTVTTADG--TYEAK-KLVVSAGAW-VKDLL 208 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeC--Ce---EEEEeCCC--EEEee-EEEEecCcc-hhhhc
Confidence 345689999999999998755 22 33332222 57785 799999974 44543
No 126
>PRK12831 putative oxidoreductase; Provisional
Probab=42.32 E-value=66 Score=36.76 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=42.2
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-----------------CCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-----------------NGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-----------------~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
...++++++++.+.+|..+++ +++++|++.. .|..+++.++ .||+|.|-.-...++.
T Consensus 329 ~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~ 402 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVD-TVIMSLGTSPNPLISS 402 (464)
T ss_pred HHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECCCCCCChhhhc
Confidence 356899999999999976543 6888988751 2345678896 7999999765555443
No 127
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=41.96 E-value=39 Score=39.70 Aligned_cols=54 Identities=22% Similarity=0.410 Sum_probs=39.6
Q ss_pred cCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 436 RNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 436 ~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
.+.+|++++.+ .|+.+..+.+ +++.||... +|. .+.|+ .||||+|++...++..
T Consensus 107 e~~pgV~Ile~-~Vv~li~e~~-g~V~GV~t~-~G~--~I~Ad-~VILATGtfL~g~ihi 160 (617)
T TIGR00136 107 ENQPNLSLFQG-EVEDLILEDN-DEIKGVVTQ-DGL--KFRAK-AVIITTGTFLRGKIHI 160 (617)
T ss_pred HcCCCcEEEEe-EEEEEEEecC-CcEEEEEEC-CCC--EEECC-EEEEccCcccCCCEEe
Confidence 45679999755 7888877532 578898875 343 68885 7999999997666655
No 128
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=40.77 E-value=59 Score=33.99 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=34.9
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAI 488 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai 488 (801)
+|.....+.+++++.+++|+++..+++ .+ .|.+. ....+++|+ .||+|.|+-
T Consensus 96 ~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~-~~~~~--~~~~~~~a~-~vv~a~G~~ 147 (295)
T TIGR02032 96 QLAERAQEAGAELRLGTTVLDVEIHDD--RV-VVIVR--GGEGTVTAK-IVIGADGSR 147 (295)
T ss_pred HHHHHHHHcCCEEEeCcEEeeEEEeCC--EE-EEEEc--CccEEEEeC-EEEECCCcc
Confidence 443444567899999999999988763 22 22222 233467884 799999964
No 129
>PRK10015 oxidoreductase; Provisional
Probab=40.55 E-value=42 Score=37.93 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=38.0
Q ss_pred hHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCC
Q psy14643 428 YHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGA 487 (801)
Q Consensus 428 ~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGa 487 (801)
...+|...+...+++++.+++|+.|..++ +++++|.. ++ .++.|+ .||+|.|+
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~--~~--~~i~A~-~VI~AdG~ 162 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQA--GD--DILEAN-VVILADGV 162 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEe--CC--eEEECC-EEEEccCc
Confidence 44456554556789999999999998765 46666643 23 368884 79999996
No 130
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=39.35 E-value=60 Score=35.85 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=33.2
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
...+ +++|+.++.|+.|..++ ++ ..|+. .+|. ++.|+ .||+|+|+- ++.|
T Consensus 144 ~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t-~~g~--~~~a~-~vV~a~G~~-~~~l 193 (381)
T TIGR03197 144 HAGI-RLTLHFNTEITSLERDG--EG-WQLLD-ANGE--VIAAS-VVVLANGAQ-AGQL 193 (381)
T ss_pred ccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEe-CCCC--EEEcC-EEEEcCCcc-cccc
Confidence 4455 89999999999998754 32 23332 2343 36785 699999964 4443
No 131
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=39.32 E-value=44 Score=36.48 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=29.0
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAG 486 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAG 486 (801)
.+..++|+++++|+.+..+++++ .-+.+.. .++..++.++ .||||.|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~~--~~l~~~~~~~~~~~~~~~D-~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDGG--VRLTLRHRQTGEEETLEVD-AVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES-SS--EEEEEEETTT--EEEEEES-EEEE---
T ss_pred CCCCeEEeCCCEEEEEEECCCCE--EEEEEEECCCCCeEEEecC-EEEEcCC
Confidence 45579999999999999887533 2334442 5778888897 6999998
No 132
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=38.87 E-value=72 Score=36.99 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=43.7
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHh
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMH 496 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~ 496 (801)
+.|++|++++.|++|.-++ +++++|++.. .++..++.++ .||+|.|..-++.+|-.
T Consensus 400 ~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 4699999999999997443 5788888863 3556788886 79999998887777643
No 133
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=37.44 E-value=55 Score=35.82 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=35.7
Q ss_pred cccCCCCeeeccCCcEEee-ccCCCCCCCCCChHHHHHHHHHHHHHHHhhhccC
Q psy14643 742 TVVDNELRVHGIKNLRVAD-ASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQG 794 (801)
Q Consensus 742 ~VVD~~~rV~G~~NL~V~D-aSvfP~~~~~NPtlTi~AlA~R~Ad~I~~~~~~~ 794 (801)
=+||.++|+.+++|+|+++ ++.++..+........+..|..+|..|.+.+..+
T Consensus 260 i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~ 313 (364)
T TIGR03169 260 LRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQ 313 (364)
T ss_pred EEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCC
Confidence 5788899998999999986 4445543322222345566777888888777543
No 134
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.39 E-value=32 Score=39.55 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=36.5
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCHHHHHh
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTPHILMH 496 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~SprLLl~ 496 (801)
.+++..+.+|+++++|++|+.++ ++ |+.+.. ++ ..+.++ .||.++.- ..+..|..
T Consensus 232 ~~~~~~Gg~I~~~~~V~~I~v~~--g~--g~~~~~~~g--~~~~ad-~vv~~~~~-~~~~~l~~ 287 (487)
T COG1233 232 ELAREHGGEIRTGAEVSQILVEG--GK--GVGVRTSDG--ENIEAD-AVVSNADP-ALLARLLG 287 (487)
T ss_pred HHHHHcCCEEECCCceEEEEEeC--Cc--ceEEecccc--ceeccc-eeEecCch-hhhhhhhh
Confidence 34567789999999999999987 45 444442 33 567774 46666665 44444443
No 135
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=35.89 E-value=77 Score=36.24 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-----------------CCEEEEEEeeeEEEecCCCCCC-HHHHHhhCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVK-----------------NGKKRIVFARKEIILSAGAINT-PHILMHSGV 499 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-----------------~g~~~~v~A~k~VILaAGai~S-prLLl~SGI 499 (801)
..++++++++.+.+|..+++ +++++|++.. .++..++.++ .||+|.|..-. ..+|..+|+
T Consensus 332 ~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~~~~~~gl 409 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPAD-VVIMAFGFQPHAMPWLAGHGI 409 (467)
T ss_pred hcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECC-EEEECCcCCCCccccccccCc
Confidence 56899999999999976543 6788887741 1345688896 69999997654 334444443
No 136
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=34.99 E-value=45 Score=38.09 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=45.0
Q ss_pred hHHhhccccCCCCeE--EeeCceEEEEEeeCCCCeEEEEEEEEC-CEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 428 YHAYIEPVRNRPNLH--ISLNSQVTRVLIDSESKKAYGVEFVKN-GKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 428 ~~~~L~~~~~~~nl~--v~~~a~V~rI~~d~~~~~a~gV~~~~~-g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
...||...+++-++. |..+++|++|..++ ++ .-|..... +...+...+ .||||.|....|++.---|+
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~-w~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GK-WRVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecC--Ce-EEEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence 334776666666776 99999999998654 22 23333322 233345564 69999999988988765554
No 137
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.79 E-value=75 Score=35.04 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=40.3
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCC-CCHHHH
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAI-NTPHIL 494 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai-~SprLL 494 (801)
.+++.+++++.|.+++-.++ |+ ..+.+. ..++..+++.+ .||||.|-= ..|.+|
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~-g~-~~l~~~~~~~~~~~t~~~D-~vIlATGY~~~~P~fL 346 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGD-GR-YRLTLRHHETGELETVETD-AVILATGYRRAVPSFL 346 (436)
T ss_pred CCCeeeccccceeeeecCCC-ce-EEEEEeeccCCCceEEEee-EEEEecccccCCchhh
Confidence 67999999999999987765 44 444444 25778888886 799999965 456544
No 138
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=34.61 E-value=80 Score=35.88 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=45.0
Q ss_pred hhHHhhccc---cCCCCeEEeeCceEEEEEeeCC--CCeEEEEEEEECCEEEEE--EeeeEEEecCCCCC
Q psy14643 427 SYHAYIEPV---RNRPNLHISLNSQVTRVLIDSE--SKKAYGVEFVKNGKKRIV--FARKEIILSAGAIN 489 (801)
Q Consensus 427 ~~~~~L~~~---~~~~nl~v~~~a~V~rI~~d~~--~~~a~gV~~~~~g~~~~v--~A~k~VILaAGai~ 489 (801)
...+.+.|+ ++..++++..+++|+.|.++.+ .++|+++++..+|...+| ..+..|++.-|++-
T Consensus 205 QyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 205 QYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred cHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 333444443 2577999999999999999754 356888888877665444 45568999888763
No 139
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.15 E-value=73 Score=36.34 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=39.0
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE-ECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV-KNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~-~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
..+++.+++|++++.|++|.-++ +. ..|.+. .+|...++.++ .||+|.|..-+..+
T Consensus 221 ~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~ 277 (466)
T PRK07818 221 KQYKKLGVKILTGTKVESIDDNG--SK-VTVTVSKKDGKAQELEAD-KVLQAIGFAPRVEG 277 (466)
T ss_pred HHHHHCCCEEEECCEEEEEEEeC--Ce-EEEEEEecCCCeEEEEeC-EEEECcCcccCCCC
Confidence 33456799999999999997543 22 234443 35665678886 79999998766554
No 140
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=34.06 E-value=66 Score=36.21 Aligned_cols=52 Identities=21% Similarity=0.130 Sum_probs=36.0
Q ss_pred cccCCCCeeeccCCcEEe-eccCCCCCCCCCChH-HHHHHHHHHHHHHHhhhccC
Q psy14643 742 TVVDNELRVHGIKNLRVA-DASVMPILIAAHPMA-PIYMIGEKCADMIKDTWSQG 794 (801)
Q Consensus 742 ~VVD~~~rV~G~~NL~V~-DaSvfP~~~~~NPtl-Ti~AlA~R~Ad~I~~~~~~~ 794 (801)
=.||+++|+-+++|+|++ |++-++..+ ..++. ..+.-|..+|+.|...+..+
T Consensus 297 I~Vd~~l~~~~~~~IfAiGD~a~~~~~~-~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 297 ISVDDHLRVKPIPNVFALGDCAANEERP-LPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred EEeCCCcccCCCCCEEEEeccccCCCCC-CCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 468999999999999966 666565322 22333 34566778888888887543
No 141
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=32.55 E-value=55 Score=35.82 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=29.5
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHH
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHI 493 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprL 493 (801)
+.+++|+.++.|+.|.. + +|+. .+| .+.|+ .||+|+|+ .+..|
T Consensus 158 ~~Gv~i~~~t~V~~i~~----~---~v~t-~~g---~i~a~-~VV~A~G~-~s~~l 200 (365)
T TIGR03364 158 QHGVEFHWNTAVTSVET----G---TVRT-SRG---DVHAD-QVFVCPGA-DFETL 200 (365)
T ss_pred cCCCEEEeCCeEEEEec----C---eEEe-CCC---cEEeC-EEEECCCC-Chhhh
Confidence 35899999999999952 1 3333 234 25685 69999998 45554
No 142
>PRK07233 hypothetical protein; Provisional
Probab=31.52 E-value=50 Score=37.00 Aligned_cols=51 Identities=25% Similarity=0.249 Sum_probs=35.4
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHH
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHIL 494 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLL 494 (801)
...+.+|++++.|++|..++ +++++|. .+++ ++.++ .||+|+..-..++||
T Consensus 209 ~~~g~~v~~~~~V~~i~~~~--~~~~~~~--~~~~--~~~ad-~vI~a~p~~~~~~ll 259 (434)
T PRK07233 209 EARGGEIRLGTPVTSVVIDG--GGVTGVE--VDGE--EEDFD-AVISTAPPPILARLV 259 (434)
T ss_pred HhcCceEEeCCCeeEEEEcC--CceEEEE--eCCc--eEECC-EEEECCCHHHHHhhc
Confidence 34578999999999998765 4455554 2343 57785 699999865555443
No 143
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=31.11 E-value=99 Score=35.20 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=38.7
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHIL 494 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLL 494 (801)
.+++.+++|++++.|++|.-++ +.+ .|+...++...++.++ .||+|.|..-...+|
T Consensus 222 ~l~~~gV~i~~~~~V~~i~~~~--~~v-~v~~~~gg~~~~i~~D-~vi~a~G~~p~~~~l 277 (462)
T PRK06416 222 ALKKRGIKIKTGAKAKKVEQTD--DGV-TVTLEDGGKEETLEAD-YVLVAVGRRPNTENL 277 (462)
T ss_pred HHHHcCCEEEeCCEEEEEEEeC--CEE-EEEEEeCCeeEEEEeC-EEEEeeCCccCCCCC
Confidence 3446689999999999997654 222 2333334555678886 699999987665553
No 144
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=30.97 E-value=92 Score=35.42 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=37.4
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPH 492 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~Spr 492 (801)
..++.++++++++.|++|..++ +.+. |+. .+|...++.++ .||+|.|..-+..
T Consensus 220 ~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~-~~g~~~~i~~D-~vi~a~G~~p~~~ 272 (461)
T TIGR01350 220 ALKKKGVKILTNTKVTAVEKND--DQVV-YEN-KGGETETLTGE-KVLVAVGRKPNTE 272 (461)
T ss_pred HHHHcCCEEEeCCEEEEEEEeC--CEEE-EEE-eCCcEEEEEeC-EEEEecCCcccCC
Confidence 3445689999999999997654 3332 322 34545568886 6999999877666
No 145
>KOG2495|consensus
Probab=30.61 E-value=45 Score=36.91 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=30.4
Q ss_pred cccCCCCeeeccCCcEEe-eccCCCCCCCCCChHHHHHHHHHHHHHHHhhh
Q psy14643 742 TVVDNELRVHGIKNLRVA-DASVMPILIAAHPMAPIYMIGEKCADMIKDTW 791 (801)
Q Consensus 742 ~VVD~~~rV~G~~NL~V~-DaSvfP~~~~~NPtlTi~AlA~R~Ad~I~~~~ 791 (801)
=.||+.+||.|++|+|-+ |++.+|... | ..-+|++-++.+.+-+
T Consensus 348 L~vDE~LrV~G~~nvfAiGDca~~~~~~---~---tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 348 LAVDEWLRVKGVKNVFAIGDCADQRGLK---P---TAQVAEQQGAYLAKNF 392 (491)
T ss_pred eeeeceeeccCcCceEEeccccccccCc---c---HHHHHHHHHHHHHHHH
Confidence 489999999999999954 677566543 3 3456666665555443
No 146
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=30.29 E-value=76 Score=36.18 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=37.4
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPH 492 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~Spr 492 (801)
..++..+++++++++|++|..++ + ...|++..++...++.++ .||+|.|..-...
T Consensus 215 ~~l~~~gV~i~~~~~V~~i~~~~--~-~~~v~~~~~~~~~~i~~D-~ViiA~G~~p~~~ 269 (463)
T TIGR02053 215 EALAEEGIEVVTSAQVKAVSVRG--G-GKIITVEKPGGQGEVEAD-ELLVATGRRPNTD 269 (463)
T ss_pred HHHHHcCCEEEcCcEEEEEEEcC--C-EEEEEEEeCCCceEEEeC-EEEEeECCCcCCC
Confidence 34456789999999999997643 2 233444433344578886 6999999765544
No 147
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=30.29 E-value=79 Score=35.20 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=36.7
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGA 487 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGa 487 (801)
||...+...+++++++++|+.+..+++ +.+.++ .. +. .+++| |.||.|-|+
T Consensus 100 ~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~-~~--~~-~e~~a-~~vI~AdG~ 150 (396)
T COG0644 100 WLAERAEEAGAELYPGTRVTGVIREDD-GVVVGV-RA--GD-DEVRA-KVVIDADGV 150 (396)
T ss_pred HHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEE-Ec--CC-EEEEc-CEEEECCCc
Confidence 676666678999999999999998874 333332 22 22 78899 478888874
No 148
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=30.21 E-value=81 Score=37.82 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=42.7
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-----------------CCEEEEEEeeeEEEecCCCCCCH-HHHHhhC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-----------------NGKKRIVFARKEIILSAGAINTP-HILMHSG 498 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-----------------~g~~~~v~A~k~VILaAGai~Sp-rLLl~SG 498 (801)
...+++++.++.+.+|..+++ +++++|++.. .|+.+++.++ .||+|.|..... .+|..+|
T Consensus 517 ~~~Gv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~~~~g 594 (654)
T PRK12769 517 REEGANFEFNVQPVALELNEQ-GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPAD-AVIMAFGFNPHGMPWLESHG 594 (654)
T ss_pred HHcCCeEEeccCcEEEEECCC-CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECC-EEEECccCCCCccccccccC
Confidence 356899999999999976543 6788998741 1345689996 799999965442 3343344
Q ss_pred C
Q psy14643 499 V 499 (801)
Q Consensus 499 I 499 (801)
|
T Consensus 595 l 595 (654)
T PRK12769 595 V 595 (654)
T ss_pred C
Confidence 3
No 149
>KOG2853|consensus
Probab=30.12 E-value=1e+02 Score=33.20 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=40.6
Q ss_pred eeCceEEEEEeeC---------CC------CeEEEEEEE-ECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCCC
Q psy14643 444 SLNSQVTRVLIDS---------ES------KKAYGVEFV-KNGKKRIVFARKEIILSAGAINTPHILMHSGVGP 501 (801)
Q Consensus 444 ~~~a~V~rI~~d~---------~~------~~a~gV~~~-~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG~ 501 (801)
+.+-+|+..+|+. ++ .++.||.+. .++..+++++. .+|+|||| -|-|+-.+.|||-
T Consensus 260 f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~a-l~V~aAGa-~s~QvArlAgIG~ 331 (509)
T KOG2853|consen 260 FVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFA-LCVNAAGA-WSGQVARLAGIGK 331 (509)
T ss_pred EecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEE-EEEeccCc-cHHHHHHHhccCC
Confidence 3445677777762 21 256677776 45667889995 79999998 5889999999984
No 150
>PRK06370 mercuric reductase; Validated
Probab=29.87 E-value=1e+02 Score=35.18 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=37.5
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPH 492 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~Spr 492 (801)
..++..|+++++++.|.+|.-+++ + ..|.+...+...++.++ .||+|.|..-...
T Consensus 220 ~~l~~~GV~i~~~~~V~~i~~~~~-~--~~v~~~~~~~~~~i~~D-~Vi~A~G~~pn~~ 274 (463)
T PRK06370 220 EILEREGIDVRLNAECIRVERDGD-G--IAVGLDCNGGAPEITGS-HILVAVGRVPNTD 274 (463)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCC-E--EEEEEEeCCCceEEEeC-EEEECcCCCcCCC
Confidence 344567999999999999976542 2 23444433334568886 6999999776555
No 151
>PRK07045 putative monooxygenase; Reviewed
Probab=29.86 E-value=1e+02 Score=33.97 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=36.8
Q ss_pred hhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC
Q psy14643 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 426 s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S 490 (801)
.....++..+...+|++++.+++|+.|..+++ +.++.|.+. +|+ ++.++ .||-|-| +.|
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~-~g~--~~~~~-~vIgADG-~~S 165 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLS-DGE--RVAPT-VLVGADG-ARS 165 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeC-CCC--EEECC-EEEECCC-CCh
Confidence 33333443344568999999999999998765 344556553 453 57774 4555555 555
No 152
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=29.19 E-value=97 Score=34.32 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=37.9
Q ss_pred hHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCH
Q psy14643 428 YHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTP 491 (801)
Q Consensus 428 ~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~Sp 491 (801)
....+..+.+.+|++++.+++|+.+..++ ..++ |.+..+|+ +++|+ -||-|=| ++|.
T Consensus 107 ~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~-v~l~~dG~--~~~a~-llVgADG-~~S~ 163 (387)
T COG0654 107 LNALLEAARALPNVTLRFGAEVEAVEQDG--DGVT-VTLSFDGE--TLDAD-LLVGADG-ANSA 163 (387)
T ss_pred HHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceE-EEEcCCCc--EEecC-EEEECCC-CchH
Confidence 33344334467889999999999999877 3455 55554566 88884 4444444 5554
No 153
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=29.00 E-value=40 Score=38.57 Aligned_cols=72 Identities=25% Similarity=0.492 Sum_probs=48.3
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhh------------CCCCh
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHS------------GVGPR 502 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~S------------GIG~~ 502 (801)
+...+|++|+-++ |+.|+.+++ .++.||... .|. .+.| |.|||++|++-.-+|..=+ -+|-+
T Consensus 110 le~~~NL~l~q~~-v~dli~e~~-~~v~GV~t~-~G~--~~~a-~aVVlTTGTFL~G~I~iG~~~~~aGr~ge~~s~~Ls 183 (621)
T COG0445 110 LENQPNLHLLQGE-VEDLIVEEG-QRVVGVVTA-DGP--EFHA-KAVVLTTGTFLRGKIHIGDTNYSAGRLGEPPSIGLS 183 (621)
T ss_pred HhcCCCceehHhh-hHHHhhcCC-CeEEEEEeC-CCC--eeec-CEEEEeecccccceEEeccccccCCCCCCccchHHH
Confidence 4568899998875 777877552 468888776 344 4567 4699999998555554321 24445
Q ss_pred hhhhhCCCce
Q psy14643 503 EHLESLKIKV 512 (801)
Q Consensus 503 ~~L~~~Gi~~ 512 (801)
+.|+++|.++
T Consensus 184 ~~L~~lGf~l 193 (621)
T COG0445 184 DRLRELGFKL 193 (621)
T ss_pred HHHHhcCcEE
Confidence 6777777664
No 154
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=1.3e+02 Score=32.46 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=48.3
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE--CCEEEEEEeeeEEEecCCCCCCHHHHHhh
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK--NGKKRIVFARKEIILSAGAINTPHILMHS 497 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~--~g~~~~v~A~k~VILaAGai~SprLLl~S 497 (801)
+.+-+|++|+++++-+.|.=|+ .+++|.+|+. .|..+.+.-. -|++--|-+-+..+|.-+
T Consensus 399 l~sl~Nv~ii~na~Ttei~Gdg--~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 399 LRSLPNVTIITNAQTTEVKGDG--DKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred HhcCCCcEEEecceeeEEecCC--ceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 3467899999999999997554 6899999993 5777777765 488888988888888766
No 155
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=28.60 E-value=1.1e+02 Score=36.69 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-----------------CCEEEEEEeeeEEEecCCCCCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVK-----------------NGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-----------------~g~~~~v~A~k~VILaAGai~S 490 (801)
..|+++++++.+++|..+++ +++++|++.. .|..+++.++ .||+|.|...+
T Consensus 501 ~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD-~Vi~AiG~~p~ 568 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPAD-VLIMAFGFQAH 568 (639)
T ss_pred HcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECcCCCCC
Confidence 56899999999999986543 6788887641 1356788996 79999996543
No 156
>PLN02612 phytoene desaturase
Probab=27.90 E-value=58 Score=38.31 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=33.0
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAG 486 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAG 486 (801)
+.+.+|++++.|++|..+++ +++++|++. +|+ ++.|+ .||+|..
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~-~G~--~~~ad-~VI~a~p 363 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDD-GTVKHFLLT-NGS--VVEGD-VYVSATP 363 (567)
T ss_pred hcCCEEEeCCeeeEEEECCC-CcEEEEEEC-CCc--EEECC-EEEECCC
Confidence 35789999999999998765 567777764 454 46785 6888764
No 157
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=27.59 E-value=1.1e+02 Score=34.65 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=42.5
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
++...++..+++++++++|++|.- + +++..|.. ++. ++.++ .||+|.|..-+..+|..+|+
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~--~-~~~~~v~~--~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIG--E-DKVEGVVT--DKG--EYEAD-VVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEec--C-CcEEEEEe--CCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence 333344567899999999999953 2 33444432 333 47785 79999998877788888876
No 158
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=27.18 E-value=1.2e+02 Score=32.44 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=38.5
Q ss_pred hhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE-ECCEEEEEEeeeEEEecCCCCCC
Q psy14643 427 SYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV-KNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 427 ~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~-~~g~~~~v~A~k~VILaAGai~S 490 (801)
.....|...+++.+++|..+++|+.+..+.+ .++.+... .+|+..++.|+ .||-|-|+ +|
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~~~g~~~~i~ad-lvVgADG~-~S 172 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDGEDGEEETIEAD-LVVGADGA-HS 172 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEETCTCEEEEEEES-EEEE-SGT-T-
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccccCCceeEEEEe-eeecccCc-cc
Confidence 3444554444445599999999999988874 34433333 35788899995 56666664 44
No 159
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=26.71 E-value=1.4e+02 Score=32.99 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=43.0
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCC
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVG 500 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG 500 (801)
...++.++++++++.|.+|..++ +. ..|++ .+|+ ++.++ .||+|.|..-++.++..+|+.
T Consensus 191 ~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~-~~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 191 HRLTEMGVHLLLKSQLQGLEKTD--SG-IRATL-DSGR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHhCCCEEEECCeEEEEEccC--CE-EEEEE-cCCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 34456789999999999997654 22 23443 3443 57785 799999988888888888874
No 160
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=26.22 E-value=1.3e+02 Score=33.22 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=33.3
Q ss_pred CCCCeEEeeCceEEEEEe-eCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC
Q psy14643 437 NRPNLHISLNSQVTRVLI-DSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~-d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S 490 (801)
...+++++.+++|++|.- ++ ....|.+..+|+..+++++ -||-|=| ++|
T Consensus 114 ~~~gv~v~~~~~v~~i~~~~~---~~~~V~~~~~G~~~~i~ad-~vVgADG-~~S 163 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDFDS---DRPYVTYEKDGEEHRLDCD-FIAGCDG-FHG 163 (392)
T ss_pred HhCCCeEEEeeeEEEEEecCC---CceEEEEEcCCeEEEEEeC-EEEECCC-CCC
Confidence 356899999999999874 33 2335666556777889994 4444545 555
No 161
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=26.10 E-value=1.3e+02 Score=32.93 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=35.8
Q ss_pred echhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCC
Q psy14643 424 RVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGA 487 (801)
Q Consensus 424 r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGa 487 (801)
|......++..+.+.+|++++.+++|++|..+++ .+ .|.+ .+|. ++.|+ .||.|.|+
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~--~~-~v~~-~~g~--~~~ad-~vV~AdG~ 160 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQD--YV-RVTL-DNGQ--QLRAK-LLIAADGA 160 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC--eE-EEEE-CCCC--EEEee-EEEEecCC
Confidence 3444444444334346999999999999986653 22 2333 2443 57784 78999984
No 162
>PRK08244 hypothetical protein; Provisional
Probab=26.03 E-value=1.3e+02 Score=34.44 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=37.0
Q ss_pred HhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCC
Q psy14643 430 AYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 430 ~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~ 489 (801)
..|...+...+++|+.+++|++|..+++ .+ .|.+.. +| ..+++|+ .||.|.|+--
T Consensus 104 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v-~v~~~~~~g-~~~i~a~-~vVgADG~~S 159 (493)
T PRK08244 104 KVLEEHARSLGVEIFRGAEVLAVRQDGD--GV-EVVVRGPDG-LRTLTSS-YVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHcCCeEEeCCEEEEEEEcCC--eE-EEEEEeCCc-cEEEEeC-EEEECCCCCh
Confidence 3454444456899999999999987653 22 244443 34 4578895 7999999743
No 163
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=25.76 E-value=47 Score=35.51 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=42.9
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTP 491 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~Sp 491 (801)
...+.+--++++-.|.+..+.+ ++++.|..+ +.....+.|+ ++|||.|++-|-
T Consensus 267 ~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~tr-n~~diP~~a~-~~VLAsGsffsk 319 (421)
T COG3075 267 QFEQLGGLWMPGDEVKKATCKG--GRVTEIYTR-NHADIPLRAD-FYVLASGSFFSK 319 (421)
T ss_pred HHHHcCceEecCCceeeeeeeC--CeEEEEEec-ccccCCCChh-Heeeeccccccc
Confidence 3446678899999999999977 789888776 6677888995 899999997543
No 164
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=25.68 E-value=1.3e+02 Score=33.63 Aligned_cols=60 Identities=12% Similarity=0.297 Sum_probs=38.0
Q ss_pred hhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-C-----CEEEEEEeeeEEEecCCC
Q psy14643 426 SSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-N-----GKKRIVFARKEIILSAGA 487 (801)
Q Consensus 426 s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~-----g~~~~v~A~k~VILaAGa 487 (801)
.....+|...+.+.+++|+.++ |..+..........+|++.. + |+..+++|+ .||.|-|+
T Consensus 93 ~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~-~VIgADG~ 158 (398)
T TIGR02028 93 EVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD-AVIGADGA 158 (398)
T ss_pred HHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeC-EEEECCCc
Confidence 3444466555556789998875 77776533223455666652 2 555689994 78888885
No 165
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=25.51 E-value=1.1e+02 Score=35.02 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=39.2
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCHHHH
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTPHIL 494 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~SprLL 494 (801)
.+++.+++|++++.|++|.-++ +.+ .|++.. +|+..++.++ .||+|.|..-+...|
T Consensus 233 ~l~~~gi~i~~~~~v~~i~~~~--~~v-~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~~l 289 (475)
T PRK06327 233 AFTKQGLDIHLGVKIGEIKTGG--KGV-SVAYTDADGEAQTLEVD-KLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHHcCcEEEeCcEEEEEEEcC--CEE-EEEEEeCCCceeEEEcC-EEEEccCCccCCCCC
Confidence 3446789999999999997654 222 344443 3555678886 699999987766544
No 166
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=25.01 E-value=1.4e+02 Score=37.86 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=48.1
Q ss_pred ccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 435 VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 435 ~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
.+++.+++|++++.|++|.-+ +++.+|++.. ++...++.++ .|+++.|..-+..|+...|.
T Consensus 360 ~L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 360 EARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCC
Confidence 345678999999999999632 4577888873 4556678896 79999999999998887764
No 167
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=24.68 E-value=1.8e+02 Score=33.79 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=38.7
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE-CCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK-NGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~-~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
+.+|++|+.+++|+.|..+++ .+ .|++.. +|+..+++|+ -||-|-|+--+.|=++
T Consensus 125 ~~~gv~v~~g~~v~~i~~~~~--~v-~v~~~~~~G~~~~i~ad-~vVgADG~~S~vR~~l 180 (538)
T PRK06183 125 RFPHVRVRFGHEVTALTQDDD--GV-TVTLTDADGQRETVRAR-YVVGCDGANSFVRRTL 180 (538)
T ss_pred hCCCcEEEcCCEEEEEEEcCC--eE-EEEEEcCCCCEEEEEEE-EEEecCCCchhHHHHc
Confidence 447999999999999987764 22 344443 5667789994 7888888755554333
No 168
>PRK11445 putative oxidoreductase; Provisional
Probab=24.41 E-value=2e+02 Score=31.32 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=38.0
Q ss_pred HhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCC
Q psy14643 430 AYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINT 490 (801)
Q Consensus 430 ~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~S 490 (801)
.+|.... ..+++++.++.|+.|..+++ . ..|.+..+|+..++.|+ .||.|.|+--.
T Consensus 103 ~~L~~~~-~~gv~v~~~~~v~~i~~~~~--~-~~v~~~~~g~~~~i~a~-~vV~AdG~~S~ 158 (351)
T PRK11445 103 LWLKSLI-PASVEVYHNSLCRKIWREDD--G-YHVIFRADGWEQHITAR-YLVGADGANSM 158 (351)
T ss_pred HHHHHHH-hcCCEEEcCCEEEEEEEcCC--E-EEEEEecCCcEEEEEeC-EEEECCCCCcH
Confidence 3554332 46799999999999987653 2 23554446666678895 79999996543
No 169
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=24.09 E-value=1.1e+02 Score=29.80 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=35.3
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeE----EEEEEEECCEEEEEEeeeEEEecCCC
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKA----YGVEFVKNGKKRIVFARKEIILSAGA 487 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a----~gV~~~~~g~~~~v~A~k~VILaAGa 487 (801)
.+.+++++.+++|.+|.... +++ ..+.....+...++.++ .||||.|+
T Consensus 69 ~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d-~lviAtG~ 120 (201)
T PF07992_consen 69 KNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYD-YLVIATGS 120 (201)
T ss_dssp HHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEE-EEEEESTE
T ss_pred ccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCC-eeeecCcc
Confidence 35789999999999997765 332 23333346777889995 79999994
No 170
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=23.59 E-value=1.4e+02 Score=33.83 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=40.4
Q ss_pred CCCCeEEeeCceEEEEEeeCCCCeEEEEEEEE----------------CCEEEEEEeeeEEEecCCCCCCHHHHH
Q psy14643 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVK----------------NGKKRIVFARKEIILSAGAINTPHILM 495 (801)
Q Consensus 437 ~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~----------------~g~~~~v~A~k~VILaAGai~SprLLl 495 (801)
+..++++++++.|.+|.-++ +.+++|++.. .+...++.++ .||+|.|..-...|+.
T Consensus 322 ~~~GV~i~~~~~v~~i~~~~--~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~l~~ 393 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGDE--GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPAD-LVIKAIGQTPNPLILS 393 (457)
T ss_pred HHCCCEEEecCCcEEEEecC--CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECC-EEEECccCCCCchhhc
Confidence 45789999999999987543 3456777641 2455678896 7999999776655543
No 171
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=23.07 E-value=2.2e+02 Score=35.74 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=40.9
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEE----------------CCEEEEEEeeeEEEecCCCCCCHH
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVK----------------NGKKRIVFARKEIILSAGAINTPH 492 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~----------------~g~~~~v~A~k~VILaAGai~Spr 492 (801)
..+++++.++.+.+|.-+++++++++|++.. .|+..++.++ .||+|.|-..++.
T Consensus 496 eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD-~VI~AiG~~p~~~ 565 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVD-LVIMALGNTANPI 565 (944)
T ss_pred HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECC-EEEEcCCcCCChh
Confidence 4689999999999998665456788887631 2445779996 7999999876654
No 172
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=22.36 E-value=2e+02 Score=33.76 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=41.7
Q ss_pred CCCeEEeeCceEEEEEeeCCCCeEEEEEEEE---------------CCEEEEEEeeeEEEecCCCCCCHHHHHh-hCC
Q psy14643 438 RPNLHISLNSQVTRVLIDSESKKAYGVEFVK---------------NGKKRIVFARKEIILSAGAINTPHILMH-SGV 499 (801)
Q Consensus 438 ~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~---------------~g~~~~v~A~k~VILaAGai~SprLLl~-SGI 499 (801)
..+++|++++.+.+|+-+++ +++ ||++.. .|+.+++.++ .||+|.|..-.+.+|.. +|+
T Consensus 317 ~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~~~~~~~gl 391 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEAD-LVVLAIGQDIDSAGLESVPGV 391 (564)
T ss_pred HcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECC-EEEECcCCCCchhhhhhccCc
Confidence 46899999999999975442 444 776531 3455789996 79999997766666653 454
No 173
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=21.92 E-value=1.3e+02 Score=33.66 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=36.7
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHH
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPH 492 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~Spr 492 (801)
.|....++.+++|++++.|++|..++ + ...|+. +++ ++.++ .||+|+|....|+
T Consensus 110 ~L~~~l~~~gv~i~~~~~V~~i~~~~--~-~~~v~~--~~~--~i~ad-~VIlAtG~~s~p~ 163 (400)
T TIGR00275 110 ALLNELKELGVEILTNSKVKSIKKDD--N-GFGVET--SGG--EYEAD-KVILATGGLSYPQ 163 (400)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEecC--C-eEEEEE--CCc--EEEcC-EEEECCCCcccCC
Confidence 33334456789999999999996543 2 233443 333 46785 7999999987664
No 174
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=21.63 E-value=1.7e+02 Score=32.50 Aligned_cols=62 Identities=16% Similarity=0.311 Sum_probs=42.2
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVG 500 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGIG 500 (801)
++....+..++++++++.|++|.- + +. ..|+. .+|+ ++.++ .||+|.|..-...|+..+|+.
T Consensus 191 ~l~~~l~~~GV~i~~~~~V~~i~~-~--~~-~~v~l-~~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~ 252 (396)
T PRK09754 191 YLLQRHQQAGVRILLNNAIEHVVD-G--EK-VELTL-QSGE--TLQAD-VVIYGIGISANDQLAREANLD 252 (396)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEEc-C--CE-EEEEE-CCCC--EEECC-EEEECCCCChhhHHHHhcCCC
Confidence 343344567899999999999864 2 22 22333 3454 47785 799999998887877777763
No 175
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=21.33 E-value=1.5e+02 Score=36.64 Aligned_cols=64 Identities=9% Similarity=0.186 Sum_probs=45.6
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGV 499 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SGI 499 (801)
.+....+..+++|++++.|++|.-+++ .....|.+. +|+ ++.++ .||+|+|..-+..|+..+|+
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~-dG~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFA-DGS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEEC-CCC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 333444567999999999999975432 234455543 454 57786 79999999888888777876
No 176
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=21.31 E-value=1.8e+02 Score=34.31 Aligned_cols=66 Identities=18% Similarity=0.100 Sum_probs=46.9
Q ss_pred CcccccCcccCCCCCCCcccCCCCeeeccCCcEEee---ccCCCC-CC-CCCChHHHHHHHHHHHHHHHhhhccCC
Q psy14643 725 VHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVAD---ASVMPI-LI-AAHPMAPIYMIGEKCADMIKDTWSQGE 795 (801)
Q Consensus 725 ~~H~~GT~rMG~~~d~~~VVD~~~rV~G~~NL~V~D---aSvfP~-~~-~~NPtlTi~AlA~R~Ad~I~~~~~~~~ 795 (801)
..+-+|+.++- ++ .-|+|.++++ ++|||.++ ++++-. -+ .++.....+..+..+++++.+..+.++
T Consensus 501 ~~~T~GGl~id--~~-~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~~ 571 (574)
T PRK12842 501 DLGTFDGLRTD--VT-GEVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGGRK 571 (574)
T ss_pred ccccCCCcCCC--CC-ceEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhcccc
Confidence 44555666655 33 3788888874 69999999 345532 12 377788999999999999988766554
No 177
>PRK06184 hypothetical protein; Provisional
Probab=21.25 E-value=2e+02 Score=33.12 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=35.1
Q ss_pred hhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCC
Q psy14643 431 YIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAIN 489 (801)
Q Consensus 431 ~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~ 489 (801)
.|.......+++|..+++|++|..+++ .++ |.+...+...+++|+ .||.|.|+--
T Consensus 114 ~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~~~~~~~~i~a~-~vVgADG~~S 168 (502)
T PRK06184 114 ILRERLAELGHRVEFGCELVGFEQDAD--GVT-ARVAGPAGEETVRAR-YLVGADGGRS 168 (502)
T ss_pred HHHHHHHHCCCEEEeCcEEEEEEEcCC--cEE-EEEEeCCCeEEEEeC-EEEECCCCch
Confidence 333333445899999999999987653 222 233322334578895 7888888643
No 178
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=20.72 E-value=1.5e+02 Score=33.68 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=36.8
Q ss_pred CeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCCCCCHHHHHhhC
Q psy14643 440 NLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSG 498 (801)
Q Consensus 440 nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGai~SprLLl~SG 498 (801)
..+|..++.|+.+.++.+++ .--|.+..++... +.++ .||+|+|.++.|.+=---|
T Consensus 98 ~~~i~~~~~v~~~~~~~~~~-~w~V~~~~~~~~~-~~a~-~vV~ATG~~~~P~iP~~~G 153 (443)
T COG2072 98 RFQIRFNTRVEVADWDEDTK-RWTVTTSDGGTGE-LTAD-FVVVATGHLSEPYIPDFAG 153 (443)
T ss_pred eeEEEcccceEEEEecCCCC-eEEEEEcCCCeee-EecC-EEEEeecCCCCCCCCCCCC
Confidence 35666777777788887643 4455555333333 7885 7999999988887644333
No 179
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=20.08 E-value=2e+02 Score=31.42 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=36.5
Q ss_pred echhhHHhhccccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEEECCEEEEEEeeeEEEecCCC
Q psy14643 424 RVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGA 487 (801)
Q Consensus 424 r~s~~~~~L~~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~~~g~~~~v~A~k~VILaAGa 487 (801)
|......++..+.+.+|++|+.+++|++|..++ +.+ .|+. .+|+ ++.++ .||.|.|+
T Consensus 105 r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~-~v~~-~~g~--~~~~~-~vi~adG~ 161 (385)
T TIGR01988 105 NRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHV-ELTL-DDGQ--QLRAR-LLVGADGA 161 (385)
T ss_pred cHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--Cee-EEEE-CCCC--EEEee-EEEEeCCC
Confidence 334445455555556679999999999998765 222 2333 2453 47774 68888885
No 180
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.08 E-value=1.6e+02 Score=33.63 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=38.1
Q ss_pred cccCCCCeEEeeCceEEEEEeeCCCCeEEEEEEE--ECCEEEEEEeeeEEEecCCCCCCHHHH
Q psy14643 434 PVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKEIILSAGAINTPHIL 494 (801)
Q Consensus 434 ~~~~~~nl~v~~~a~V~rI~~d~~~~~a~gV~~~--~~g~~~~v~A~k~VILaAGai~SprLL 494 (801)
..++..+++|++++.|++|.-+++ + ..+++. .++...++.++ .||+|.|..-+...|
T Consensus 223 ~~l~~~gV~i~~~~~V~~i~~~~~-~--v~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l 281 (466)
T PRK06115 223 KALTKQGMKFKLGSKVTGATAGAD-G--VSLTLEPAAGGAAETLQAD-YVLVAIGRRPYTQGL 281 (466)
T ss_pred HHHHhcCCEEEECcEEEEEEEcCC-e--EEEEEEEcCCCceeEEEeC-EEEEccCCccccccC
Confidence 344567899999999999975432 2 223333 23555678886 699999987555543
Done!