RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14643
(801 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 336 bits (865), Expect = e-106
Identities = 169/506 (33%), Positives = 238/506 (47%), Gaps = 78/506 (15%)
Query: 306 WPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIPELRN 364
PRGK +GGSS +N M+Y RG DYD WA + G GWSY + PYF K E E
Sbjct: 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE--- 138
Query: 365 SPHHSTTGYVPV--GYNPYKSQVVDAFLESSK---YVNQSTIDYN--QPENYLGFSRIQA 417
+ G + V G P + + AF+E+ Y T D N Q E GF +
Sbjct: 139 DDYRGGDGPLSVTRG-KPGTNPLFQAFVEAGVQAGY--PRTDDLNGYQQE---GFGPMDR 192
Query: 418 TTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFA 477
T NG+R S+ AY++P RPNL I ++ R+L E K+A GVE+ + G + A
Sbjct: 193 TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILF--EGKRAVGVEYERGGGRETARA 250
Query: 478 RKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHN 536
R+E+ILSAGAIN+P +L SG+GP EHL+ L I V DLP VGENLQDH+ + +
Sbjct: 251 RREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV---YIQYE 307
Query: 537 TTE---LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIF 593
+ L+ + + G G+G+ E GF+++ +P+I++ F
Sbjct: 308 CKQPVSLYPALKWWNKPKIGAEWLFTGTGLGA-SNHFEAGGFIRS--RAGVDWPNIQYHF 364
Query: 594 ---AI---GSLAADS-GHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRIL 646
AI GS A G G PM SRG +
Sbjct: 365 LPVAIRYDGSNAVKGHGFQAHVG------------------------PM--RSPSRGSVK 398
Query: 647 LGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI-GSKLNPVPLPGCKQ 705
L S +P P + NY E D + I++ + G +++P
Sbjct: 399 LKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGA------ 452
Query: 706 YEFESD---DYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADAS 762
+ ++D D + R+ T +H S TC+MG D VVD E RVHG++ LRV DAS
Sbjct: 453 -DVQTDEEIDAF---VREHAETAYHPSCTCKMG--TDPMAVVDPEGRVHGVEGLRVVDAS 506
Query: 763 VMPILIAAHPMAPIYMIGEKCADMIK 788
+MP + + AP MI EK AD+I+
Sbjct: 507 IMPTITNGNLNAPTIMIAEKAADLIR 532
Score = 123 bits (310), Expect = 3e-29
Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 51/229 (22%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIF---AI---GSLAADS-GHTVRRGMGITDECYNQAYKH 96
E GF+++ +P+I++ F AI GS A G G
Sbjct: 344 EAGGFIRS--RAGVDWPNIQYHFLPVAIRYDGSNAVKGHGFQAHVG-------------- 387
Query: 97 LEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLS 156
PM SRG + L S +P P + NY E D + I++ +
Sbjct: 388 ----------PMR--SPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIM 435
Query: 157 RTEPFQRI-GSKLNPVPLPGCKQYEFESD---DYWACTARQITATVHHMSGTCRMGINED 212
G +++P + ++D D + R+ T +H S TC+MG D
Sbjct: 436 AQPALDPYRGREISPGA-------DVQTDEEIDAFV---REHAETAYHPSCTCKMG--TD 483
Query: 213 GTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
VVD E RVHG++ LRV DAS+MP + + AP MI EK AD+I+
Sbjct: 484 PMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 297 bits (763), Expect = 1e-91
Identities = 155/494 (31%), Positives = 229/494 (46%), Gaps = 43/494 (8%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMT-I 359
+ WPRGK +GGSS +N M+Y RG P D+D WA G PGW YD+V PYF + E++ +
Sbjct: 77 RELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGV 136
Query: 360 PELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATT 419
H G +PV + + AF+E+ + + T + GF T
Sbjct: 137 GGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI 196
Query: 420 RNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARK 479
NG+R S+ AY++P RPNL + ++V R+L++ + VE G A +
Sbjct: 197 CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAR 256
Query: 480 EIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHIT---MAGLAFTH 535
E++L+AGAIN+P +L+ SG+GP +HL I V LP VG+NLQDH+
Sbjct: 257 EVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEATEPT 316
Query: 536 NTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAI 595
N + L ++ + + G G+ EG GFV++ YPD ++ FA
Sbjct: 317 NDSVLSLFSKLGI---GADRYLLTRDGPGAT-NHFEG-GFVRS--GPAGEYPDGQYHFAP 369
Query: 596 GSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKA 655
LA G +T+ + PKSRG + L S +P
Sbjct: 370 LPLAI---RAAGAEHG------------------FTLHVGPMRPKSRGSVTLRSPDPDNR 408
Query: 656 PLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQ-RIGSKLNPVPLPGCKQYEFESDDYW 714
P++ NY E D GI++ + R ++L P P +D+
Sbjct: 409 PVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELAPGP-------RVTTDEDI 461
Query: 715 ACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMA 774
+ R + T +H GTCRMG ++ V D LRVHG++NLRV DASVMP +P
Sbjct: 462 SAAIRFLARTAYHPMGTCRMG-SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNL 520
Query: 775 PIYMIGEKCADMIK 788
I + E+ AD I
Sbjct: 521 TIIALAERAADHIL 534
Score = 120 bits (303), Expect = 2e-28
Identities = 70/262 (26%), Positives = 104/262 (39%), Gaps = 37/262 (14%)
Query: 1 MAGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYP 60
N + L ++ + + G G+ EG GFV++ YP
Sbjct: 309 AFEATEPTNDSVLSLFSKLGI---GADRYLLTRDGPGAT-NHFEG-GFVRS--GPAGEYP 361
Query: 61 DIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILL 120
D ++ FA LA G +T+ + PKSRG + L
Sbjct: 362 DGQYHFAPLPLAI---RAAGAEHG------------------FTLHVGPMRPKSRGSVTL 400
Query: 121 GSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQ-RIGSKLNPVPLPGCKQY 179
S +P P++ NY E D GI++ + R ++L P P
Sbjct: 401 RSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELAPGP------- 453
Query: 180 EFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPI 239
+D+ + R + T +H GTCRMG ++ V D LRVHG++NLRV DASVMP
Sbjct: 454 RVTTDEDISAAIRFLARTAYHPMGTCRMG-SDPAAVVDDPYLRVHGLENLRVVDASVMPT 512
Query: 240 LIAAHPMAPIYMIGEKCADMIK 261
+P I + E+ AD I
Sbjct: 513 STGVNPNLTIIALAERAADHIL 534
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 271 bits (695), Expect = 6e-82
Identities = 173/506 (34%), Positives = 246/506 (48%), Gaps = 63/506 (12%)
Query: 299 MVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWA-AMGNPGWSYDEVYPYFLKIENM 357
M +R RGK +GGSS +N MIY RG P DY++WA G W Y + PY+ ++E
Sbjct: 69 MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETT 128
Query: 358 TIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTIDYN--QPENYLGFSR 414
E P+ G + V P + + AF+E+ T D N + E GF
Sbjct: 129 FGGE---KPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFRQE---GFGP 182
Query: 415 IQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRI 474
+ +T NG+RVS+ AY+ P RPNL + + VT++ E +A GVEF K G+K
Sbjct: 183 MDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINF--EGNRATGVEFKKGGRKEH 240
Query: 475 VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAF 533
A KE+ILSAGAIN+P +L SG+G EHL L I+ LP VGENLQDH+ +
Sbjct: 241 TEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV---YV 297
Query: 534 THNTTE---LFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIE 590
H + L+ L Q F + G G EG GFV++ N D YP+I+
Sbjct: 298 QHACKQPVSLYPSLNWLKQPFIGAQWLFGRKGAG-ASNHFEGGGFVRS--NDDVDYPNIQ 354
Query: 591 FIF---AI---GSLAADS-GHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRG 643
+ F AI G+ A + G V G PM SRG
Sbjct: 355 YHFLPVAIRYDGTKAPKAHGFQVHVG------------------------PM--YSNSRG 388
Query: 644 RILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPF-QRIGSKLNPVPLPG 702
+ + S++P + P + NY E D E I++ + + + G +++P P
Sbjct: 389 HVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGP--- 445
Query: 703 CKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADAS 762
E ++D+ R+ T H GTC+MG D +VVD E RVHG++ LRV DAS
Sbjct: 446 ----EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDAS 501
Query: 763 VMPILIAAHPMAPIYMIGEKCADMIK 788
+MP + + AP+ M+GEK AD+I+
Sbjct: 502 IMPRITNGNLNAPVIMMGEKAADIIR 527
Score = 101 bits (253), Expect = 2e-22
Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 43/226 (19%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIF---AI---GSLAADS-GHTVRRGMGITDECYNQAYKH 96
EG GFV++ N D YP+I++ F AI G+ A + G V G
Sbjct: 337 EGGGFVRS--NDDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVG-------------- 380
Query: 97 LEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLS 156
PM SRG + + S++P + P + NY E D E I++ +
Sbjct: 381 ----------PMY--SNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREIL 428
Query: 157 RTEPF-QRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTT 215
+ + G +++P P E ++D+ R+ T H GTC+MG D +
Sbjct: 429 KQKALDPYRGGEISPGP-------EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMS 481
Query: 216 VVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
VVD E RVHG++ LRV DAS+MP + + AP+ M+GEK AD+I+
Sbjct: 482 VVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIR 527
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 162 bits (411), Expect = 1e-46
Identities = 54/145 (37%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 112 PKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPV 171
P+SRGR+ L S +PL P++ NY D +DL L +++A + +L P
Sbjct: 1 PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILAAAL-----VELTPG 55
Query: 172 PLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRV 231
P+ SDD R T H GTCRMG + D VVD +LRVHG+ NLRV
Sbjct: 56 PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPD-DGVVDPDLRVHGVDNLRV 114
Query: 232 ADASVMPILIAAHPMAPIYMIGEKC 256
DASV P + +P IY + E+
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139
Score = 162 bits (411), Expect = 1e-46
Identities = 54/145 (37%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 639 PKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPV 698
P+SRGR+ L S +PL P++ NY D +DL L +++A + +L P
Sbjct: 1 PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILAAAL-----VELTPG 55
Query: 699 PLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRV 758
P+ SDD R T H GTCRMG + D VVD +LRVHG+ NLRV
Sbjct: 56 PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPD-DGVVDPDLRVHGVDNLRV 114
Query: 759 ADASVMPILIAAHPMAPIYMIGEKC 783
DASV P + +P IY + E+
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 157 bits (398), Expect = 1e-43
Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 38/231 (16%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWA-AMGNPGWSYDEVYPYFLKIENMTIP 360
+R P G +GG S +N+ R D WA G GW YD+ PY K+E
Sbjct: 17 RRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE----- 71
Query: 361 ELRNSPHHSTTGYVPVGY-NPYKSQVVDAFLESSKY--VNQSTIDYNQPEN-YLGFSRIQ 416
G + V +S + A L++++ + N Y GF +
Sbjct: 72 -----------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGLG 120
Query: 417 ATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEF--VKNGKKRI 474
G + S+ ++ P R NL I ++ +++I +A GVE G KR+
Sbjct: 121 --CPTGAKQSTARTWLRPALER-NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRL 177
Query: 475 VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGENLQDH 525
+ A KE++++AGA+NTP +L+ SG+G H PVG+NLQ H
Sbjct: 178 ITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQLH 216
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 151 bits (382), Expect = 6e-39
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 14/222 (6%)
Query: 308 RGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELR-NSP 366
RG+ +GGS +N + R P D+D W PGWS+D+V P+F IE +L + P
Sbjct: 80 RGRVLGGSGAVNGGYFCRALPADFDAWPI---PGWSWDDVLPHFRAIET----DLDFDGP 132
Query: 367 HHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTI-DYN--QPENYLGFSRIQATTRNGK 423
H T G +PV + AF+ ++ I D N P+ G + G+
Sbjct: 133 LHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIADLNGSGPDAPTGVGAVPLNVDGGR 192
Query: 424 RVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIIL 483
RVS+ AY+ P RPNL + +++V R+L +A GVE + +G R + A + ++L
Sbjct: 193 RVSTAVAYLLPALKRPNLTVEADTRVVRILF--SGTRAVGVEVLGDGGPRTLRADR-VVL 249
Query: 484 SAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGENLQDH 525
AGA+ + H+L+ SG+GP E L + I V DLPVG + DH
Sbjct: 250 CAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLPVGSDFVDH 291
Score = 100 bits (250), Expect = 4e-22
Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 109 LLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL 168
L+ P SRGRI L S +P P + Y +D L G +A L + L
Sbjct: 349 LMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGSPE-------L 401
Query: 169 NPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKN 228
P+ P ++ E W AT H+ G+CRMG +D VVD RV G++
Sbjct: 402 GPLLEPAVREGE----ASWV---LARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEG 454
Query: 229 LRVADASVMPILIAAHPMAPIYMIGEKCADMI 260
L V D S++P++ + P A M+ E+ A+ +
Sbjct: 455 LWVVDGSILPVIPSRGPHATAVMVAERAAEFL 486
Score = 100 bits (250), Expect = 4e-22
Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 636 LLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKL 695
L+ P SRGRI L S +P P + Y +D L G +A L + L
Sbjct: 349 LMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGSPE-------L 401
Query: 696 NPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKN 755
P+ P ++ E W AT H+ G+CRMG +D VVD RV G++
Sbjct: 402 GPLLEPAVREGE----ASWV---LARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEG 454
Query: 756 LRVADASVMPILIAAHPMAPIYMIGEKCADMI 787
L V D S++P++ + P A M+ E+ A+ +
Sbjct: 455 LWVVDGSILPVIPSRGPHATAVMVAERAAEFL 486
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 65.6 bits (160), Expect = 6e-11
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 437 NRPNLHISLNSQVTRVLIDSESK--KAYGVEFV-KNGKKRIVF----ARKEIILSAGAIN 489
N L + L++ V +++ D+ K +A GV F +NG + F EIILSAGAI
Sbjct: 231 NPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIG 290
Query: 490 TPHILMHSGVGPREHLESLKIKVE-RDLPVGENLQD 524
+P +L+ SG+GP++ L+ KI V + VG+ + D
Sbjct: 291 SPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMAD 326
Score = 49.4 bits (118), Expect = 6e-06
Identities = 39/158 (24%), Positives = 58/158 (36%), Gaps = 28/158 (17%)
Query: 112 PKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR-------- 163
P S G + L + N P + NYF+ DL V GI+ + +T F
Sbjct: 424 PISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQT 483
Query: 164 --------IGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTT 215
+ + +N +P K C + T+ H G C +G
Sbjct: 484 MEKVLNMSVKANINLIP----KHTNDTKSLEQFC--KDTVITIWHYHGGCHVG------K 531
Query: 216 VVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 253
VVD +V G+ LRV D S +P A + M+G
Sbjct: 532 VVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMG 569
Score = 49.4 bits (118), Expect = 6e-06
Identities = 39/158 (24%), Positives = 58/158 (36%), Gaps = 28/158 (17%)
Query: 639 PKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR-------- 690
P S G + L + N P + NYF+ DL V GI+ + +T F
Sbjct: 424 PISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQT 483
Query: 691 --------IGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTT 742
+ + +N +P K C + T+ H G C +G
Sbjct: 484 MEKVLNMSVKANINLIP----KHTNDTKSLEQFC--KDTVITIWHYHGGCHVG------K 531
Query: 743 VVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 780
VVD +V G+ LRV D S +P A + M+G
Sbjct: 532 VVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMG 569
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 42.5 bits (100), Expect = 9e-04
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 198 VHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHP 245
H++GT R+G ++ TTV + + +VH KNL V +P A+P
Sbjct: 478 ALHLAGTTRIGF-DEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANP 524
Score = 42.5 bits (100), Expect = 9e-04
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 725 VHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHP 772
H++GT R+G ++ TTV + + +VH KNL V +P A+P
Sbjct: 478 ALHLAGTTRIGF-DEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANP 524
>gnl|CDD|223633 COG0559, LivH, Branched-chain amino acid ABC-type transport system,
permease components [Amino acid transport and
metabolism].
Length = 297
Score = 31.0 bits (71), Expect = 2.1
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 34 GGMGSIPGGVEG---IGFVQTKYNTDPSYPDIEFIFAIGSLAA 73
GG+GSIPG V G +G ++ + + + + A L
Sbjct: 238 GGLGSIPGAVLGGLLLGLAESLVSAKYFGSEYKDVVAFLLLIL 280
Score = 31.0 bits (71), Expect = 2.1
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 561 GGMGSIPGGVEG---IGFVQTKYNTDPSYPDIEFIFAIGSLAA 600
GG+GSIPG V G +G ++ + + + + A L
Sbjct: 238 GGLGSIPGAVLGGLLLGLAESLVSAKYFGSEYKDVVAFLLLIL 280
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 29.9 bits (68), Expect = 6.0
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 430 AYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAI 488
A ++ VRNRPN+ + ++ ++I+ + GV + + F K ++L+ G +
Sbjct: 138 ALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 29.2 bits (66), Expect = 7.1
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 428 YHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGA 487
AY+E + R L I L+++VT V D V+ V A ++ + GA
Sbjct: 84 IAAYLEDLARRYGLPIRLSTRVTAVERDGGRFV------VRLTDGETVRADY-VVDATGA 136
Query: 488 INTPHILMHSG-----VGPREHLESLKIKVERDLPVG 519
+ P G V + LE + +K + +G
Sbjct: 137 FSVPKPPGFPGADAEGVHLVDVLERIDLKGKTVAVIG 173
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 29.3 bits (66), Expect = 9.3
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 437 NRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAIN 489
+ I + V ++++ + G V+ G +R + AR ++L+ G N
Sbjct: 232 RARGVRILTQTDVES--LETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,336,574
Number of extensions: 4061265
Number of successful extensions: 3031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2991
Number of HSP's successfully gapped: 31
Length of query: 801
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 696
Effective length of database: 6,280,432
Effective search space: 4371180672
Effective search space used: 4371180672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)