RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14643
(801 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 542 bits (1400), Expect = 0.0
Identities = 129/525 (24%), Positives = 228/525 (43%), Gaps = 53/525 (10%)
Query: 290 EKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVY 348
Q G + +PRG+ +GGSS ++YM+ RG+ D+DR+AA+ G+ GW++D +
Sbjct: 66 TAQAG----YNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQ 121
Query: 349 PYFLKIENMTIPE-------LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSK---YVNQ 398
+ K E + P H T G V + + + + D L +++
Sbjct: 122 QFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFF 181
Query: 399 STIDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLID--- 455
D LG S A+ NG+R SS AY+ P ++RPNL + +N+QVT+++
Sbjct: 182 FNPDMGTGHP-LGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTT 240
Query: 456 --SESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVE 513
+ + + V A+KE++LSAG++ TP +L SG+G L S+ I
Sbjct: 241 NGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTI 300
Query: 514 RDLP-VGENLQDHITMAGLAFTHNTTELFN--YNTMLAQAFTMMYNISKGGGMGSIPGGV 570
+ P VG NL DH+ + AF N+ + F+ + + + G +
Sbjct: 301 VNNPSVGRNLSDHL-LLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIA- 358
Query: 571 EGIGFVQTKYNT-------DPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKH 623
+ +++ N+ DP+ + ++ ++ A
Sbjct: 359 NHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFS---------------NQWFHPAIPR 403
Query: 624 LEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLS 683
+ + ++ L+ P +RG I L + NP PL+ Y E D++T+++ +K +
Sbjct: 404 PDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFL 463
Query: 684 RTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTV 743
+ + + P + + D R T+ H GT M V
Sbjct: 464 SGQAWADFVIRPF---DPRLR--DPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGV 518
Query: 744 VDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 788
VD +L+V G+ LR+ D S++P AH PIY++G++ AD+IK
Sbjct: 519 VDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIK 563
Score = 229 bits (587), Expect = 2e-66
Identities = 53/270 (19%), Positives = 104/270 (38%), Gaps = 30/270 (11%)
Query: 1 MAGLAFTHNTTELFN--YNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNT--- 55
+ AF N+ + F+ + + + G + + +++ N+
Sbjct: 315 LLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIA-NHLAWLRLPSNSSIF 373
Query: 56 ----DPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLL 111
DP+ + ++ ++ A + + ++ L+
Sbjct: 374 QTFPDPAAGPNSAHWETIFS---------------NQWFHPAIPRPDTGSFMSVTNALIS 418
Query: 112 PKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPV 171
P +RG I L + NP PL+ Y E D++T+++ +K + + + +
Sbjct: 419 PVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPF-- 476
Query: 172 PLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRV 231
P + + D R T+ H GT M VVD +L+V G+ LR+
Sbjct: 477 -DPRLR--DPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRI 533
Query: 232 ADASVMPILIAAHPMAPIYMIGEKCADMIK 261
D S++P AH PIY++G++ AD+IK
Sbjct: 534 VDGSILPFAPNAHTQGPIYLVGKQGADLIK 563
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 533 bits (1376), Expect = 0.0
Identities = 120/524 (22%), Positives = 193/524 (36%), Gaps = 66/524 (12%)
Query: 303 RCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIP- 360
GKG+GGS+++N +TR D W + G GW++D ++ Y K E P
Sbjct: 95 TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPT 154
Query: 361 -------ELRNSPHHSTTGYVPVGYNPY---KSQVVDAFLESSK---YVNQSTIDYNQPE 407
N+ H T G V G S ++ A + + D+
Sbjct: 155 AAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGV--PVQQDFLCGH 212
Query: 408 NYLGFSRIQATT-RNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSES--KKAYGV 464
G S I N RV + A++ P R NL I V +VL + +A GV
Sbjct: 213 P-RGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGV 271
Query: 465 EFVKNGKKRI-VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGENLQ 523
F N VFA+ E++L+AG+ +P IL +SG+G + L+ + DLPVG N+Q
Sbjct: 272 NFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQ 331
Query: 524 DHITMAGLAFTHNTTELFNYNTMLAQAFT------------MMYNISKGGGMGSIPGGVE 571
D T + + A + + + GG
Sbjct: 332 DQTTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFH 391
Query: 572 GIGFVQTKYNTDP-SYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 630
+ ++ +Y D + FA + +
Sbjct: 392 NVTALKVQYENYRNWLLDEDVAFAELFMDTEGK--------------------------I 425
Query: 631 TIWPMLLLPKSRGRILLGSRNPLKAPLLYG-NYFQDESDLWTLVEGIKMAVNLSRTEPFQ 689
L+P +RG + + S +P +F +E DL K+A +L+ +
Sbjct: 426 NFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMK 485
Query: 690 RIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELR 749
+ LPG + + W+ Q H +C M E G VVD +
Sbjct: 486 EYFAGE---TLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELG-GVVDATAK 541
Query: 750 VHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQ 793
V+G + LRV D S+ P +++H M Y + K AD I D +++
Sbjct: 542 VYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAK 585
Score = 225 bits (576), Expect = 2e-64
Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 32/243 (13%)
Query: 26 MMYNISKGGGMGSIPGGVEGIGFVQTKYNTDP-SYPDIEFIFAIGSLAADSGHTVRRGMG 84
+ + + GG + ++ +Y D + FA + +
Sbjct: 373 LNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGK-------- 424
Query: 85 ITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYG-NYFQDESDLW 143
L+P +RG + + S +P +F +E DL
Sbjct: 425 ------------------INFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLL 466
Query: 144 TLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSG 203
K+A +L+ + + LPG + + W+ Q H
Sbjct: 467 GQAAASKLARDLTSQGAMKEYFAGE---TLPGYNLVQNATLSQWSDYVLQNFRPNWHAVS 523
Query: 204 TCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDT 263
+C M E G VVD +V+G + LRV D S+ P +++H M Y + K AD I D
Sbjct: 524 SCSMMSRELGG-VVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDD 582
Query: 264 WSQ 266
+++
Sbjct: 583 YAK 585
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 519 bits (1339), Expect = e-176
Identities = 129/526 (24%), Positives = 202/526 (38%), Gaps = 54/526 (10%)
Query: 297 QAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIE 355
A Q G G+GGS+++N +TR D W + GN GW++D V Y L+ E
Sbjct: 85 LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAE 144
Query: 356 NMTIP--------ELRNSPHHSTTGYVPVG---YNPYKSQVVDAFLESSK---YVNQSTI 401
P N+ H G V G S +V A + + + +
Sbjct: 145 RARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGV--PTKK 202
Query: 402 DYNQPENYLGFSRIQATT-RNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLID--SES 458
D+ + G S T + R + ++ P RPNL + V +VL+ +
Sbjct: 203 DFGCGDP-HGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTT 261
Query: 459 KKAYGVEF-VKNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP 517
+A GVEF G V+A+ E++L+AG+ +P IL +SG+G + LE L I DLP
Sbjct: 262 PRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP 321
Query: 518 VGENLQDHITMAGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMG-------SIPGGV 570
VG NLQD T + + A + S+ V
Sbjct: 322 VGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAV 381
Query: 571 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 630
GF T + + + A S + ++
Sbjct: 382 ARGGFHNT--TALLIQYENYRDWIVNHNVAYSELFLDTAGVA----------------SF 423
Query: 631 TIWPMLLLPKSRGRILLGSRNPLKAPLLYG-NYFQDESDLWTLVEGIKMAVNLSRTEPFQ 689
+W LLP +RG + + ++P Y YF +E DL ++A N+S + Q
Sbjct: 424 DVWD--LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQ 481
Query: 690 RIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELR 749
+ +PG W +H GTC M E G VVDN R
Sbjct: 482 TYFAGE---TIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMG-GVVDNAAR 537
Query: 750 VHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGE 795
V+G++ LRV D S+ P +++H M Y + K +D I + ++ +
Sbjct: 538 VYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 583
Score = 212 bits (541), Expect = 8e-60
Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 25/230 (10%)
Query: 40 PGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQ 99
V GF T + + + A S + +
Sbjct: 378 EEAVARGGFHNT--TALLIQYENYRDWIVNHNVAYSELFLDTAGVAS------------- 422
Query: 100 KNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYG-NYFQDESDLWTLVEGIKMAVNLSRT 158
+ +W LLP +RG + + ++P Y YF +E DL ++A N+S +
Sbjct: 423 ---FDVWD--LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNS 477
Query: 159 EPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVD 218
Q + +PG W +H GTC M E G VVD
Sbjct: 478 GAMQTYFAGE---TIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGG-VVD 533
Query: 219 NELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGE 268
N RV+G++ LRV D S+ P +++H M Y + K +D I + ++ +
Sbjct: 534 NAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 583
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 501 bits (1293), Expect = e-170
Identities = 132/525 (25%), Positives = 209/525 (39%), Gaps = 40/525 (7%)
Query: 290 EKQPGQCQAMVKQRCRWP--RGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEV 347
+R P RGK +GGSS LNY + G +D+W G W++D +
Sbjct: 70 TMVRR----DDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPL 125
Query: 348 YPYFLKIENMTIPELR---NSPHHSTTGYVPVGYNPYKSQ---VVDAFLESSK---YVNQ 398
PY K G +P+ + + + ++ K
Sbjct: 126 VPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ--P 183
Query: 399 STIDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSES 458
+ E G + T G+R S+ V+N+PN+ I R++I+
Sbjct: 184 LIENIYDGEMD-GLTHCCDTIYRGQRSGSFL----FVKNKPNITIVPEVHSKRLIINEAD 238
Query: 459 KKAYGVEFV-KNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP 517
+ GV V G + FA +E+ILS G TP +LM SG+GP L I D
Sbjct: 239 RTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSR 298
Query: 518 -VGENLQDHITMAGLAFTHNTTELFNY--NTMLAQAFTMMYNISKGGGMGSIPGGVEGIG 574
VG+NL DH + + + + + + + G G +E +G
Sbjct: 299 HVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGS-GLLELVG 357
Query: 575 FVQTKYNTDPSYPDIEFIFAIGSLAADSG----HTVRRGMGITDECYNQAYKHLEQKNTW 630
F + + + A G S H + + + + + +
Sbjct: 358 FPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDHL 417
Query: 631 TIWPMLLLPKSR-GRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVN-LSRTEPF 688
T+ L+ P S G + L S +P + P + N+F ++ D+ + EGI+ + + L + E F
Sbjct: 418 TVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGF 477
Query: 689 QRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNEL 748
+ + P +P +SD T H +GT R+ N D VVD +L
Sbjct: 478 KDLVESEYPWEMP------LDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKL 530
Query: 749 RVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQ 793
+VHGIK LRVADASV+PI+ +Y +GEKCADMIK
Sbjct: 531 KVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHKD 575
Score = 212 bits (543), Expect = 4e-60
Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 14/241 (5%)
Query: 32 KGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSG----HTVRRGMGITD 87
G G +E +GF + + + A G S H + +
Sbjct: 343 NRSGPVGS-GLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFG 401
Query: 88 ECYNQAYKHLEQKNTWTIWPMLLLPKSR-GRILLGSRNPLKAPLLYGNYFQDESDLWTLV 146
+ + + + T+ L+ P S G + L S +P + P + N+F ++ D+ +
Sbjct: 402 TAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMR 461
Query: 147 EGIKMAVN-LSRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTC 205
EGI+ + + L + E F+ + P +P +SD T H +GT
Sbjct: 462 EGIRFSYDLLFKGEGFKDLVESEYPWEMP------LDSDKEMHRAVLDRCQTAFHPTGTA 515
Query: 206 RMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWS 265
R+ N D VVD +L+VHGIK LRVADASV+PI+ +Y +GEKCADMIK
Sbjct: 516 RLSKNID-QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHK 574
Query: 266 Q 266
Sbjct: 575 D 575
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 454 bits (1171), Expect = e-152
Identities = 140/498 (28%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 303 RCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAA-MGNPGWSYDEVYPYFLKIENMTIPE 361
R R K MGG S N I D D W A G GW+ + +P + ++E
Sbjct: 84 FMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG 143
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQS----TIDYNQPENYLGFSRIQA 417
++PHH +G V + P K A L++ + Q+ G + Q
Sbjct: 144 -PDAPHHGDSGPVHLMNVPPKDPTGVALLDACE---QAGIPRAKFNTGTTVVNGANFFQI 199
Query: 418 TTR-NGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKN--GKKRI 474
R +G R SS +YI P+ + N + + +++ D ++ GV+ V + G
Sbjct: 200 NRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHR 258
Query: 475 VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAF 533
+ AR E++LS GAI+TP +LM SG+GP HL I+V D P VGE+LQDH
Sbjct: 259 LTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP------- 311
Query: 534 THNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIF 593
+ + + S E F T PD+ +
Sbjct: 312 ----------------EGVVQFEAKQPMVAESTQWW-EIGIFTPT--EDGLDRPDLMMHY 352
Query: 594 AIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPL 653
+T+R G + +N +++ P + +SRG + L SR+
Sbjct: 353 GSVPF---DMNTLRHG-------------YPTTENGFSLTPNVTHARSRGTVRLRSRDFR 396
Query: 654 KAPLLYGNYFQDE--SDLWTLVEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFES 710
P++ YF D D+ +V GI+ A ++ G +L+P E ++
Sbjct: 397 DKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGV-------EAQT 449
Query: 711 DDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAA 770
D+ R+ TV+H GT RMG ED + +D ELRV G+ LRVADASVMP +
Sbjct: 450 DEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTV 509
Query: 771 HPMAPIYMIGEKCADMIK 788
+P + MIGE+CAD+I+
Sbjct: 510 NPNITVMMIGERCADLIR 527
Score = 192 bits (490), Expect = 5e-53
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 44 EGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTW 103
E F T PD+ + +T+R G + +N +
Sbjct: 332 EIGIFTPT--EDGLDRPDLMMHYGSVPF---DMNTLRHG-------------YPTTENGF 373
Query: 104 TIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDE--SDLWTLVEGIKMAVNLSRTEPF 161
++ P + +SRG + L SR+ P++ YF D D+ +V GI+ A ++
Sbjct: 374 SLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAM 433
Query: 162 QR-IGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNE 220
G +L+P E ++D+ R+ TV+H GT RMG ED + +D E
Sbjct: 434 AEWTGRELSPGV-------EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPE 486
Query: 221 LRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
LRV G+ LRVADASVMP + +P + MIGE+CAD+I+
Sbjct: 487 LRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 453 bits (1168), Expect = e-152
Identities = 125/495 (25%), Positives = 194/495 (39%), Gaps = 70/495 (14%)
Query: 303 RCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWA-AMGNPGWSYDEVYPYFLKIENMTIPE 361
W RG+ +GGSS L+ M Y RG P D+ W A G+ W +DE+ P F IE+
Sbjct: 88 AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH---P 144
Query: 362 LRNSPHHSTTGYVPVGY-NPYKSQVVDAFLESSKYVNQS----TIDYNQPENYLGFSRIQ 416
L H G +P+ S + AF+E+ +N E G +
Sbjct: 145 LGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGA---SLGLPRLEGHNSGEMI-GVTPNS 200
Query: 417 ATTRNGKRVSSYHAYIEP-VRNRPNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIV 475
R+G+RV++ A++ VR R NL I S+V R+ + E + +E V V
Sbjct: 201 LNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKL--EGNQVRSLEVVGRQGSAEV 258
Query: 476 FARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFT 534
FA +I+L AGA+ +P +LM SG+GP + L++ + D+P +G NLQDH+ AG
Sbjct: 259 FAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGN--- 314
Query: 535 HNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFA 594
+Y K + E + +++ T P+I
Sbjct: 315 -------------------LYAARKPVPPSRLQHS-ESMAYMRADSFTAAGQPEIVVGCG 354
Query: 595 IGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLK 654
+ + ++S G + + + P SRG + +
Sbjct: 355 VAPIVSESFPAPAAGSAYS------------------LLFGITHPTSRGSVRISGPELGD 396
Query: 655 APLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFESDDY 713
++ Y Q D ++ + + + +L P S
Sbjct: 397 RLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELLPGTP--------NSAAE 448
Query: 714 WACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPM 773
+ T HH GTCRMG +D VVD LR+ + NL V DAS+MP L A
Sbjct: 449 MDDFIARSVITHHHPCGTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIH 506
Query: 774 APIYMIGEKCADMIK 788
A + I E A
Sbjct: 507 AAVLAIAETFARQYH 521
Score = 196 bits (500), Expect = 2e-54
Identities = 47/237 (19%), Positives = 77/237 (32%), Gaps = 30/237 (12%)
Query: 26 MMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGI 85
+Y K + E + +++ T P+I + + ++S G
Sbjct: 314 NLYAARKPVPPSRLQHS-ESMAYMRADSFTAAGQPEIVVGCGVAPIVSESFPAPAAGSAY 372
Query: 86 TDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTL 145
+ + + P SRG + + ++ Y Q D
Sbjct: 373 S------------------LLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERF 414
Query: 146 VEGIKMAVNLSRTEPFQR-IGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGT 204
++ + + + +L P S + T HH GT
Sbjct: 415 RRALEASRTIGHRDELAGWRERELLPGTP--------NSAAEMDDFIARSVITHHHPCGT 466
Query: 205 CRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
CRMG +D VVD LR+ + NL V DAS+MP L A A + I E A
Sbjct: 467 CRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYH 521
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 436 bits (1124), Expect = e-145
Identities = 106/511 (20%), Positives = 172/511 (33%), Gaps = 95/511 (18%)
Query: 303 RCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPEL 362
RG+ +GG+S++N +Y R Y W D V + +E+
Sbjct: 94 GIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVED------ 143
Query: 363 RNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNG 422
+ ++S AFLE+ ++ G +T N
Sbjct: 144 -TIVYK-------PNSQSWQSVTKTAFLEAGV---HPNHGFSLDHEE-GTRITGSTFDNK 191
Query: 423 KRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSES-KKAYGVEFVKNGK---KRIVFAR 478
+ + N NL + +++ V +++ + A GV + + + V ++
Sbjct: 192 GTRHAADELLNK-GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSK 250
Query: 479 KEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHITMAGLAFTHNT 537
E+I+SAG I TP +L+ SGVGP +L SL I V P VG+ L D+
Sbjct: 251 GEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP---RNFINILP 307
Query: 538 TELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGS 597
+ + N S+P + F F S
Sbjct: 308 PNPIEPTIVTVLGIS---NDFYQCSFSSLP------------------FTTPPFGFFPSS 346
Query: 598 LAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGRI-LLGSRNPLKAP 656
T + P S G + L S N +P
Sbjct: 347 SYPLPNSTF-----------------------AHFASKVAGPLSYGSLTLKSSSNVRVSP 383
Query: 657 LLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSK---------LNPVPLPGCKQYE 707
+ NY+ + +DL V G+K L T+ + + + +PLP +
Sbjct: 384 NVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQT-- 441
Query: 708 FESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPIL 767
D + R+ A+ H G C +G V+D + RV GI LRV D S P
Sbjct: 442 --DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYT 493
Query: 768 IAAHPMAPIYMIGEKCADMIKDTWSQGENKV 798
A+HP M+G I S + K+
Sbjct: 494 PASHPQGFYLMLGRYVGIKILQERSASDLKI 524
Score = 184 bits (470), Expect = 2e-50
Identities = 50/232 (21%), Positives = 77/232 (33%), Gaps = 43/232 (18%)
Query: 58 SYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRGR 117
+ F F S T + P S G
Sbjct: 334 PFTTPPFGFFPSSSYPLPNSTF-----------------------AHFASKVAGPLSYGS 370
Query: 118 I-LLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSK--------- 167
+ L S N +P + NY+ + +DL V G+K L T+ + +
Sbjct: 371 LTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFN 430
Query: 168 LNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIK 227
+ +PLP + D + R+ A+ H G C +G V+D + RV GI
Sbjct: 431 ILGIPLPKDQT----DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGIN 480
Query: 228 NLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGENKLYANVTPDG 279
LRV D S P A+HP M+G I S + K+ ++
Sbjct: 481 ALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASDLKILDSLKSAA 532
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 405 bits (1044), Expect = e-133
Identities = 102/528 (19%), Positives = 180/528 (34%), Gaps = 83/528 (15%)
Query: 286 SIQAEKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGW--S 343
S+ + P + G +GG + +N +Y D+ GW S
Sbjct: 71 SLFTDSNPF----WWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV-----GWPSS 121
Query: 344 YDEVYPYFLKIENMTIPELRNSPHHSTTG--YVPVGYNPYKSQVVDAFLESSKYVNQSTI 401
+ PY K+ + L ++ H ST G Y+ +N V L+ Y +
Sbjct: 122 WTNHAPYTSKLSS----RLPSTDHPSTDGQRYLEQSFNV-----VSQLLKGQGYNQATIN 172
Query: 402 DYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKA 461
D +++ F NGKR Y++ RPN N V+ V+ +
Sbjct: 173 DNPNYKDH-VFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVR--NGSQI 229
Query: 462 YGVEFVKN----GKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP 517
GV+ V + +ILSAGA T IL SG+GP + +++++
Sbjct: 230 LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAA 289
Query: 518 -----------VGENLQDHITMAGLAFTHNTTELFNYNTMLAQAFTMMYNI-----SKGG 561
VG N QD+ L FTH + + Y +
Sbjct: 290 LPPQNQWINLPVGMNAQDNP-SINLVFTHPSIDA--YENWADVWSNPRPADAAQYLANQS 346
Query: 562 GMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAY 621
G+ + G + F + +D + G+ + +S T Y
Sbjct: 347 GVFA--GASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLS-- 402
Query: 622 KHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVN 681
+SRGRI + + L+ +L + + D L++ + V+
Sbjct: 403 ---------------TGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVS 445
Query: 682 LSRTEP-FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDG 740
+ P I P ++ + + T +H + +G +
Sbjct: 446 NIGSIPGLTMIT--------PD----VTQTLEEYVDAYDPATMNSNHWVSSTTIGSS-PQ 492
Query: 741 TTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 788
+ VVD+ ++V G NL + DA ++P L +P + E+ A I
Sbjct: 493 SAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 540
Score = 166 bits (423), Expect = 4e-44
Identities = 39/231 (16%), Positives = 78/231 (33%), Gaps = 35/231 (15%)
Query: 32 KGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYN 91
G+ + G + F + +D + G+ + +S T Y
Sbjct: 344 NQSGVFA--GASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYL 401
Query: 92 QAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKM 151
+SRGRI + + L+ +L + + D L++ +
Sbjct: 402 S-----------------TGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHD 442
Query: 152 AVNLSRTEP-FQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGTCRMGIN 210
V+ + P I P ++ + + T +H + +G +
Sbjct: 443 VVSNIGSIPGLTMIT--------PD----VTQTLEEYVDAYDPATMNSNHWVSSTTIGSS 490
Query: 211 EDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIK 261
+ VVD+ ++V G NL + DA ++P L +P + E+ A I
Sbjct: 491 -PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 540
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 134 bits (338), Expect = 6e-33
Identities = 65/510 (12%), Positives = 138/510 (27%), Gaps = 55/510 (10%)
Query: 306 WPRGKGMGGSSVLNYMIYTRGTPR--DYDR-WAAMGNPGWSYDEVYPYFLKIENMTIPEL 362
+ +GG S +T TPR R + E + K E+
Sbjct: 155 QAVTRVVGGMSTA----WTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYF---- 206
Query: 363 RNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNG 422
T + + + + + Q P S +
Sbjct: 207 ----QTGTDQFKESIRHNLVLNKLTEEYKGQRDFQQ------IPLAATRRSPTFVEWSSA 256
Query: 423 KRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEFV--KNGKKRIVFARKE 480
V ++ RV+ ++ + + + +G + + A
Sbjct: 257 NTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV- 315
Query: 481 IILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGENLQDH--ITMAGLAFTHNTT 538
+L+AGA++ +L++SG G +G + + + + T
Sbjct: 316 YVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYITEQSLVFCQTVMSTELID 374
Query: 539 ELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTDPSYPD-IEFIFAIGS 597
+ + T+ + Y+++ G + V+ P I F
Sbjct: 375 SVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQ 434
Query: 598 LAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLL---LPKSRGRILL--GSRNP 652
+ + I + ++ + + PK ++ +
Sbjct: 435 VTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDA 494
Query: 653 LKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDD 712
P ++ E + + +K+ G
Sbjct: 495 YNMPQPTFDFRFPAGRTSKEAEDMM--------TDMCVMSAKI------GGFLPGSLPQF 540
Query: 713 YWACTARQITATVHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAH 771
+H GT RMG +E + V+ + RV G KNL + +P A+
Sbjct: 541 ME------PGLVLHLG-GTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGAN 593
Query: 772 PMAPIYMIGEKCADMIKDTWSQGENKVEIR 801
P + K + IK ++ E +
Sbjct: 594 PTLTAMSLAIKSCEYIKQNFTPSPFTSEAQ 623
Score = 76.0 bits (186), Expect = 2e-14
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 196 ATVHHMSGTCRMGINE-DGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGE 254
+H GT RMG +E + V+ + RV G KNL + +P A+P +
Sbjct: 545 LVLHLG-GTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAI 603
Query: 255 KCADMIKDTWSQGE 268
K + IK ++
Sbjct: 604 KSCEYIKQNFTPSP 617
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 131 bits (331), Expect = 2e-32
Identities = 74/516 (14%), Positives = 132/516 (25%), Gaps = 122/516 (23%)
Query: 290 EKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVY- 348
+ G + + G+G+GG S++N + ++ P E+Y
Sbjct: 85 DPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYD 140
Query: 349 PYFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQST---IDYNQ 405
YF + +M +H T + ++V + D+
Sbjct: 141 RYFPRANSM------LRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGY 194
Query: 406 PENYLG-------FSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSES 458
+ + N + S Y+ + I QV + +
Sbjct: 195 MQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDG 254
Query: 459 KKAYGVEFVKNG---KKRIVFARKEIILSAGAINTPHILMHS---GVGPREHLESLKIKV 512
A VE + + + L AG++ + +L+ + G P + E
Sbjct: 255 GYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSE------ 308
Query: 513 ERDLPVGENLQDHITMAGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEG 572
VG + + H G+ +
Sbjct: 309 -----VGAGWGPNGNIMTARANHMW-----------------------NPTGAHQSSIPA 340
Query: 573 IGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTI 632
+G D I + A V + IT
Sbjct: 341 LGIDAW------DNSDSSVFAEIAPMPAGLETWVSLYLAITK---------------NPQ 379
Query: 633 WPMLLLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIG 692
+ + R L AP + A L F RI
Sbjct: 380 RGTFVYDAATDRAKLNWTRDQNAPA------------------VNAAKAL-----FDRIN 416
Query: 693 SKLNPVPLPGCKQYEFESDDYWAC-TARQITATVHHMSGTCRMGINEDGTTVVDNELRVH 751
+ D + A H + G C +G D+ RV
Sbjct: 417 ---------KANGTIYRYDLFGTQLKAFADDFCYHPL-GGCVLG------KATDDYGRVA 460
Query: 752 GIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMI 787
G KNL V D S++P + +P I + E+ + I
Sbjct: 461 GYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERI 496
Score = 79.7 bits (196), Expect = 1e-15
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 190 TARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPI 249
A H + G C +G D+ RV G KNL V D S++P + +P I
Sbjct: 433 KAFADDFCYHPL-GGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTI 485
Query: 250 YMIGEKCADMI 260
+ E+ + I
Sbjct: 486 TALAERNVERI 496
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 102 bits (256), Expect = 4e-23
Identities = 73/506 (14%), Positives = 142/506 (28%), Gaps = 102/506 (20%)
Query: 290 EKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYP 349
++ G + + +G+G+GG S++N + ++ S +
Sbjct: 90 DRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL---PSVDSNEMYNK 146
Query: 350 YFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENY 409
YF + + +T + + + ++ N +Y + E
Sbjct: 147 YFPRANTGLGVNNIDQAWFESTEWYKFA-RTGRKTAQRSGFTTAFVPNVYDFEYMKKEAA 205
Query: 410 LGFSRIQ-----ATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGV 464
++ N + S Y+ L I+ +VT+V + S + +
Sbjct: 206 GQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTM 265
Query: 465 EFV---KNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGEN 521
E + N V + +AG++ T +L+ K + LP N
Sbjct: 266 EQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSM-------------KAQGHLP---N 309
Query: 522 LQDHITMAGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYN 581
L + G + +N ++ M++ GS + +G
Sbjct: 310 LSSQV---GEGWGNN-------GNIMVGRANHMWD-----ATGSKQATIPTMGI------ 348
Query: 582 TDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKS 641
+ + P I L A V + IT
Sbjct: 349 DNWADPTAPIFAEIAPLPAGLETYVSLYLAITK---------------NPERARFQFNSG 393
Query: 642 RGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLP 701
G++ L GI MA + F +I K +
Sbjct: 394 TGKVDLTWAQSQNQK------------------GIDMAKKV-----FDKINQKEGTIYRT 430
Query: 702 GCKQYEFESDDYWACTARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADA 761
++ T H + G + DN R+ L V D
Sbjct: 431 DLFGVYYK--------TWGDDFTYHPL-GGVLLN------KATDNFGRLPEYPGLYVVDG 475
Query: 762 SVMPILIAAHPMAPIYMIGEKCADMI 787
S++P + +P I + E+ D I
Sbjct: 476 SLVPGNVGVNPFVTITALAERNMDKI 501
Score = 67.5 bits (164), Expect = 7e-12
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 190 TARQITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPI 249
T H + G + DN R+ L V D S++P + +P I
Sbjct: 438 KTWGDDFTYHPL-GGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTI 490
Query: 250 YMIGEKCADMI 260
+ E+ D I
Sbjct: 491 TALAERNMDKI 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 3e-09
Identities = 89/635 (14%), Positives = 169/635 (26%), Gaps = 192/635 (30%)
Query: 87 DECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGS-------------RNPLKAP-LLY 132
D K W +L + + + + + P ++
Sbjct: 52 DHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 133 GNYFQDESDLWTLVEGI-KMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTA 191
Y + L+ + K N+SR +P+ ++ L E
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQAL----------LELRPAKN----- 152
Query: 192 RQITATVHHMSGTCRMGINEDGTTVVDNE-LRVHGIKNLRVADASVMPILIAAHPMAPIY 250
+ + G+ G T V + + ++ M I+
Sbjct: 153 ----VLIDGVLGS--------GKTWVALDVCLSYKVQ-------CKMD--------FKIF 185
Query: 251 MI--GEKCAD-----MIKDTWSQGENKLYANV-TPDGIRRRADSIQAEKQP--------- 293
+ + M++ Q + + I+ R SIQAE +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 294 ------------------GQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWA 335
C+ ++ R V +++ T D
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR----------FKQVTDFLSAATTTHISLD--- 292
Query: 336 AMGNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKY 395
+ + DEV LK + +L P T NP + ++ +
Sbjct: 293 -HHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTT------NPRRLSIIAESIRD--- 339
Query: 396 VNQSTIDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNR----------PNLHISL 445
+T D + N + I SS +EP R P+ HI
Sbjct: 340 -GLATWDNWKHVNCDKLTTIIE--------SSL-NVLEPAEYRKMFDRLSVFPPSAHIP- 388
Query: 446 NSQVTRVL-IDSESKKAYGVEFVKNG--KKRIVFARKEIILSAGAINTPHILMHSGVGPR 502
+ + ++ D V V N K +V + + I+ P I + V
Sbjct: 389 -TILLSLIWFDVIK---SDVMVVVNKLHKYSLVEKQPK----ESTISIPSIYLELKVKLE 440
Query: 503 E----H---LESLKIKVERD-----LPVGEN-----LQDHITMAGLAFTHNTTELFNYNT 545
H ++ I D P + + H+ E
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP------ERMTLFR 494
Query: 546 MLAQAFTMMYN-ISKGGGMGSIPGGVEGIGFVQTKY-----NTDPSYP----DIE-FIFA 594
M+ F + I + G + Y + DP Y I F+
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 595 IGSLAADSGHT--VRRG-MGITDECYNQAYKHLEQ 626
I S +T +R M + + +A+K +++
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 51.4 bits (122), Expect = 1e-06
Identities = 54/455 (11%), Positives = 122/455 (26%), Gaps = 140/455 (30%)
Query: 330 DYDRWAAMGNPGWSYDEVYPYFLK----------IENMT--------IPELRNSPHHSTT 371
D++ G + Y ++ F +++M I + S +
Sbjct: 8 DFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 372 GYVPVG-YNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRNGKRVS-SYH 429
+ ++V F+E I+Y +L S I+ R ++ Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVL-----RINYK----FL-MSPIKTEQRQPSMMTRMYI 113
Query: 430 AYIEPVRNRPNLHISLNSQVTRVLIDSESKKA------------YG----------VEFV 467
+ + N + N V+R+ + ++A G ++
Sbjct: 114 EQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 468 KNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPVGENLQDHIT 527
+ K + K L+ N+P ++ E L+ L +++ + + +I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 528 MAGLAFTHNTTELF---NYNTML-----------AQAF-----TMM-------YNISKGG 561
+ + L Y L AF ++ +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 562 GMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFA------IGSL--AADSGHTVRRGMGIT 613
I + T + + L + + R + I
Sbjct: 285 TTTHISLDHHSMTL--TPDEV-------KSLLLKYLDCRPQDLPREVLTTNPRRLSI-IA 334
Query: 614 DECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLYGNY-----FQDESD 668
+ + TW W + K I+ S N L+ + F +
Sbjct: 335 ESIR-------DGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 669 --------LWTLVEGIKMAVNLSRTEPFQRIGSKL 695
+W ++ +++ + +KL
Sbjct: 387 IPTILLSLIWF---------DVIKSDV-MVVVNKL 411
Score = 42.5 bits (99), Expect = 5e-04
Identities = 41/273 (15%), Positives = 79/273 (28%), Gaps = 71/273 (26%)
Query: 574 GFVQTKYNT---DPSYPDIEFIFAIGSLAAD----SGHTVRRGMGITDECYNQAYKHLEQ 626
F+ + T PS +I L D + + V R + Y + + L +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-----QPYLKLRQALLE 146
Query: 627 --KNTW-TIWPMLLLPKSRGRILLGS--RNP---LKAP-----LLYGNYFQDESD---LW 670
I +L K+ + + K L N E+ L
Sbjct: 147 LRPAKNVLIDGVLGSGKT---WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 671 TLVEGIKMAVNLSRTEPFQRIGSKLNPVP-----LPGCKQYEFES----DDYWACTARQI 721
L+ I SR++ I +++ + L K YE + A+
Sbjct: 204 KLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNVQ--NAKAW 259
Query: 722 TATVHHMSGTCRMGI---NEDGTTVVDNELRVH----------------GI--KNLRVAD 760
A + +C++ + + T + H + K L
Sbjct: 260 NA----FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 761 ASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQ 793
+ ++ +P + +I E D + TW
Sbjct: 316 QDLPREVLTTNPRR-LSIIAESIRDGL-ATWDN 346
Score = 33.7 bits (76), Expect = 0.28
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 47/157 (29%)
Query: 614 DECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGS-------------RNPLKAP-LLY 659
D K W +L + + + + + P ++
Sbjct: 52 DHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 660 GNYFQDESDLWTLVEGI-KMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTA 718
Y + L+ + K N+SR +P+ ++ L E
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQAL----------LELRPAKN----- 152
Query: 719 RQITATVHHMSGTCRMGINEDGTTVVDNE-LRVHGIK 754
+ + G+ G T V + + ++
Sbjct: 153 ----VLIDGVLGS--------GKTWVALDVCLSYKVQ 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 3e-08
Identities = 105/666 (15%), Positives = 176/666 (26%), Gaps = 273/666 (40%)
Query: 46 IGFV--QTKYNTDPSYPDI------EF---------IFAI-GSLAADSGHTVRRGMGITD 87
+G+V + + + + EF I A+ L ++ T+ + +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI- 123
Query: 88 ECYNQAYKHLEQKNTWTIWPMLLLPKSRGRILLGSRNPLKAPLLY------GN---YFQD 138
+ Y A ++ P S L + A L GN YF +
Sbjct: 124 KNYITARIMAKR-------PFDKKSNSA---LFRAVGEGNAQL-VAIFGGQGNTDDYF-E 171
Query: 139 E-SDLW----TLVEG-IKMA----VNLSRTEP-----FQR---IGSKL-NPVPLPGCKQY 179
E DL+ LV IK + L RT F + I L NP P
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP----- 226
Query: 180 EFESDDYWA-----CTARQITATVHHMSGTCR-MGINED-------GTTVVDNELRVHGI 226
DY C + H++ T + +G G T G+
Sbjct: 227 ---DKDYLLSIPISCPLIGVIQLAHYVV-TAKLLGFTPGELRSYLKGATGH-----SQGL 277
Query: 227 KNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGENKLYANVTPD-------G 279
V + IA D+W + +V G
Sbjct: 278 ---------VTAVAIAE-----------------TDSWES----FFVSVRKAITVLFFIG 307
Query: 280 IRRRADSIQAEKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGN 339
+R +A ++++ G S M+ ++
Sbjct: 308 VR----CYEAYPNTSLPPSILEDSLE----NNEGVPS---PMLSISNLTQE--------- 347
Query: 340 PGWSYDEVYPYFLKIENMTIPE-------LRNSPHHSTTGYVPVGYNPYKS-QVVDAFLE 391
+V Y + N +P L N + V G P +S ++ L
Sbjct: 348 ------QVQDY-VNKTNSHLPAGKQVEISLVNGAKN----LVVSG--PPQSLYGLNLTLR 394
Query: 392 SSK---YVNQSTIDYNQ--PENYLGFSRIQATTRNGKRVSSYH-AYIEPVRNRPNLHISL 445
+K ++QS I +++ + F + + +H + P
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVAS---------PFHSHLLVPA---------- 435
Query: 446 NSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHL 505
+ D + + +A I P G R
Sbjct: 436 ---SDLINKD--------------------LVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 506 ESLKIKVERDLPVGENLQDHIT------MAGLAF--THNTTELFNYNTMLAQAFTMMYNI 557
S+ E + D I F TH +L F
Sbjct: 473 GSI----------SERIVDCIIRLPVKWETTTQFKATH----------ILD--F------ 504
Query: 558 SKGGGMGSIPGGVEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECY 617
G PGG G+G + T N D + + I A G+L D D+
Sbjct: 505 ------G--PGGASGLGVL-THRNKDGT--GVRVIVA-GTL--DINP--------DDD-- 540
Query: 618 NQAYKH 623
+K
Sbjct: 541 -YGFKQ 545
Score = 40.8 bits (95), Expect = 0.002
Identities = 62/335 (18%), Positives = 97/335 (28%), Gaps = 122/335 (36%)
Query: 80 RRGMGITDECY----------NQAYKHLEQKNTWTIWPMLLL-PKSRGRILLGSRNPLKA 128
+GMG+ + Y N+A H + ++I +++ P + I G K
Sbjct: 1628 EQGMGM--DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-TIHFG---GEKG 1681
Query: 129 PLLYGNY----FQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESD 184
+ NY F+ D E I F+ I Y F S+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKI-----------FKEINEHST--------SYTFRSE 1722
Query: 185 DYWACTARQIT--ATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLR------------ 230
+A Q T A ED L+ G+
Sbjct: 1723 K-GLLSATQFTQPALT-----LMEKAAFED--------LKSKGLIPADATFAGHSLGEYA 1768
Query: 231 --VADASVMPI-----L-----IAAHPMAPIYMIGEKCADMIKDTWSQGENKLYANVTPD 278
+ A VM I + + P +G MI A + P
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI------------A-INPG 1815
Query: 279 GIRRRADSIQAEKQPGQCQAMVKQRCRWPRGKGMGGS-SVLNY----MIY-TRGTPRDYD 332
+ A S E Q +V++ GK G ++NY Y G R D
Sbjct: 1816 RV---AASFSQE----ALQYVVERV-----GKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
Query: 333 RWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPH 367
+ N F+K++ + I EL+ S
Sbjct: 1864 TVTNVLN-----------FIKLQKIDIIELQKSLS 1887
Score = 37.3 bits (86), Expect = 0.027
Identities = 39/222 (17%), Positives = 61/222 (27%), Gaps = 80/222 (36%)
Query: 607 RRGMGITDECY----------NQAYKHLEQKNTWTIWPMLLL-PKSRGRILLGSRNPLKA 655
+GMG+ + Y N+A H + ++I +++ P + I G K
Sbjct: 1628 EQGMGM--DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-TIHFG---GEKG 1681
Query: 656 PLLYGNY----FQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGCKQYEFESD 711
+ NY F+ D E I F+ I Y F S+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKI-----------FKEINEHST--------SYTFRSE 1722
Query: 712 DYWACTARQIT--ATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLR------------ 757
+A Q T A ED L+ G+
Sbjct: 1723 K-GLLSATQFTQPALT-----LMEKAAFED--------LKSKGLIPADATFAGHSLGEYA 1768
Query: 758 --VADASVMPI-----L-----IAAHPMAPIYMIGEKCADMI 787
+ A VM I + + P +G MI
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 32.3 bits (72), Expect = 0.85
Identities = 28/330 (8%), Positives = 83/330 (25%), Gaps = 20/330 (6%)
Query: 159 EPFQRIGSKLNPVPLP------GCKQYEFESDDYWACTARQITATVHHMSGTCRMGINED 212
E R+G ++ G + A ++Q+ + + C + +
Sbjct: 308 EARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPL-YEAN 366
Query: 213 GTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCADMIKDTWSQGENKLY 272
G V + + ++ L + ++ E +
Sbjct: 367 GQAV--PKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVK 424
Query: 273 ANVTPDGIRRRADSIQAEKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYD 332
+ + ++ + + ++ + PRD
Sbjct: 425 DEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQ---------YKEASEVKPPRDIT 475
Query: 333 RWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLES 392
+ + + + ++ V + Q++D +
Sbjct: 476 AEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFAN 535
Query: 393 SKYVNQSTIDYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRV 452
++ N + + +++ + T + + Y + L I LN+ V +V
Sbjct: 536 LEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAE--GLDIKLNTAVRQV 593
Query: 453 LIDSESKKAYGVEFVKNGKKRIVFARKEII 482
+ + V + I +
Sbjct: 594 RYTASGCEVIAVNTRSTSQTFIYKCDAVLC 623
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 32.0 bits (73), Expect = 0.90
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 443 ISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAG 486
LNS+V +++++ + G + K ++L+ G
Sbjct: 267 TRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAKSVVLATG 309
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 31.5 bits (72), Expect = 1.3
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 443 ISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAG 486
+ +V ++ D ++ + G+ + GK+ V AR+ ++L+ G
Sbjct: 219 AEYDMRVQTLVTD-DTGRVVGIVAKQYGKEVAVRARRGVVLATG 261
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 31.2 bits (71), Expect = 1.6
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 429 HAYIEPVRNR---PNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
+ + + I LNS+V R+L D S K GV V ++++A
Sbjct: 255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED-ASGKVTGVLVKGEYTGYYVIKADAVVIAA 313
Query: 486 G 486
G
Sbjct: 314 G 314
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 30.4 bits (69), Expect = 3.0
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 429 HAYIEPVRNR---PNLHISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSA 485
++ + + N+ + +N++ VL D + G+ K +IL+
Sbjct: 255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKD-DKGTVKGILVKGMYKGYYWVKADAVILAT 313
Query: 486 G 486
G
Sbjct: 314 G 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,645,204
Number of extensions: 784602
Number of successful extensions: 1734
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1618
Number of HSP's successfully gapped: 38
Length of query: 801
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 700
Effective length of database: 3,881,772
Effective search space: 2717240400
Effective search space used: 2717240400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)