RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14643
(801 letters)
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 136 bits (343), Expect = 2e-35
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 18/243 (7%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAM-GNPGWSYDEVYPYFLKIENMTIP 360
+ GKG+GGS+++N +TR D W + G GW++D ++ Y K E P
Sbjct: 94 RTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTP 153
Query: 361 ELR--------NSPHHSTTGYVPVG---YNPYKSQVVDAFLESSKYVNQS-TIDYNQPEN 408
N+ H T G V G S ++ A + + + D+
Sbjct: 154 TAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHP 213
Query: 409 YLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSES--KKAYGVEF 466
+ N RV + A++ P R NL I V +VL + +A GV F
Sbjct: 214 RGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNF 273
Query: 467 VKNGKKRI-VFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP--VGENLQ 523
N VFA+ E++L+AG+ +P IL +SG+G + L+ + DLP + +
Sbjct: 274 GTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMS 333
Query: 524 DHI 526
+
Sbjct: 334 REL 336
Score = 66.1 bits (160), Expect = 5e-12
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 194 ITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 253
+T + G C M E G VVD +V+G + LRV D S+ P +++H M Y +
Sbjct: 318 VTQLLDLPVGICSMMSRELGG-VVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMA 376
Query: 254 EKCADMIKDTWS 265
K AD I D ++
Sbjct: 377 LKVADAILDDYA 388
Score = 66.1 bits (160), Expect = 5e-12
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 721 ITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 780
+T + G C M E G VVD +V+G + LRV D S+ P +++H M Y +
Sbjct: 318 VTQLLDLPVGICSMMSRELGG-VVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMA 376
Query: 781 EKCADMIKDTWS 792
K AD I D ++
Sbjct: 377 LKVADAILDDYA 388
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 133 bits (335), Expect = 2e-34
Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 18/251 (7%)
Query: 295 QCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGN-PGWSYDEVYPYFLK 353
A Q G G+GGS+++N +TR D W + GW++D V Y L+
Sbjct: 81 VELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQ 140
Query: 354 IENMTIPELRNSPHHS-----------TTGYVPVGYNPYKSQVVDAFLESSKYVN-QSTI 401
E P + T P S +V A + + + +
Sbjct: 141 AERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKK 200
Query: 402 DYNQPENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLID--SESK 459
D+ + + + R + ++ P RPNL + V +VL+ +
Sbjct: 201 DFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTP 260
Query: 460 KAYGVEFV-KNGKKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLPV 518
+A GVEF G V+A+ E++L+AG+ +P IL +SG+G + LE L I DLPV
Sbjct: 261 RAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPV 320
Query: 519 G--ENLQDHIT 527
G + +
Sbjct: 321 GLCSMMPKEMG 331
Score = 81.1 bits (199), Expect = 6e-17
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 194 ITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 253
I V G C M ++ VVDN RV+G++ LRV D S+ P +++H M Y +
Sbjct: 312 IDTVVDLPVGLCSMM-PKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 370
Query: 254 EKCADMIKDTWSQGE 268
K +D I + ++ +
Sbjct: 371 LKISDAILEDYASMQ 385
Score = 81.1 bits (199), Expect = 6e-17
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 721 ITATVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 780
I V G C M ++ VVDN RV+G++ LRV D S+ P +++H M Y +
Sbjct: 312 IDTVVDLPVGLCSMM-PKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 370
Query: 781 EKCADMIKDTWSQGE 795
K +D I + ++ +
Sbjct: 371 LKISDAILEDYASMQ 385
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 131 bits (329), Expect = 8e-34
Identities = 59/297 (19%), Positives = 113/297 (38%), Gaps = 33/297 (11%)
Query: 292 QPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYF 351
+ + + + RG+ +GG+S++N +Y R Y W D V +
Sbjct: 83 KTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVD----WDMDLVNQTY 138
Query: 352 LKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLG 411
+E+ + + + + K+ ++A + ++ ++
Sbjct: 139 EWVEDTIVYKPNSQSWQ----------SVTKTAFLEAGVH---------PNHGFSLDHEE 179
Query: 412 FSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESK-KAYGVEFVKNG 470
+RI +T + K + N NL + +++ V +++ + A GV + +
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSN 239
Query: 471 ---KKRIVFARKEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP-VGENLQDHI 526
+ V ++ E+I+SAG I TP +L+ SGVGP +L SL I V P VG+ L +
Sbjct: 240 GTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKV 299
Query: 527 TMAGLAFTHNTTELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTD 583
T + F S G + G GI +Q + +D
Sbjct: 300 LDGDFRVTGINA----LRVVDGSTFPYTPA-SHPQGFYLMLGRYVGIKILQERSASD 351
Score = 33.7 bits (76), Expect = 0.070
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 216 VVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 253
V+D + RV GI LRV D S P A+HP M+G
Sbjct: 299 VLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 336
Score = 33.7 bits (76), Expect = 0.070
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 743 VVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIG 780
V+D + RV GI LRV D S P A+HP M+G
Sbjct: 299 VLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 336
Score = 30.2 bits (67), Expect = 0.88
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 11 TELFNYNTMLAQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTD 56
T + + F S G + G GI +Q + +D
Sbjct: 307 TGINALRVVDGSTFPYTPA-SHPQGFYLMLGRYVGIKILQERSASD 351
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 114 bits (285), Expect = 7e-28
Identities = 37/254 (14%), Positives = 77/254 (30%), Gaps = 32/254 (12%)
Query: 290 EKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYP 349
++ G + + +G+G+GG S++N + ++ + Y++ +P
Sbjct: 86 DRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFP 145
Query: 350 YFLKIENMTIPELRNSPHHSTTGYVPVGY----NPYKSQVVDAFLESSKYVNQSTIDYNQ 405
+ +T + +S AF+ + +
Sbjct: 146 RA---NTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAG 202
Query: 406 PENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVE 465
G N + S Y+ L I+ +VT+V + Y V
Sbjct: 203 QVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPA--TGSGYSVT 260
Query: 466 FVKNGKKRIVFAR-----KEIILSAGAINTPHILMHSGVGPREHLESLKIKVERDLP--- 517
+ ++ V A + +AG++ T +L+ K + LP
Sbjct: 261 MEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSM-------------KAQGHLPNLS 307
Query: 518 --VGENLQDHITMA 529
VGE + A
Sbjct: 308 SQVGEGWGVLLNKA 321
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 111 bits (278), Expect = 4e-27
Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 10/216 (4%)
Query: 290 EKQPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYP 349
+ G + + G+G+GG S++N + ++ S +
Sbjct: 82 DPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRV---DSSEMYDR 138
Query: 350 YFLKIENM----TIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQ 405
YF + +M I K+ + F+ + +
Sbjct: 139 YFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAG 198
Query: 406 PENYLGFSRIQATTRNGKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVE 465
+ N + S Y+ + I QV + + A VE
Sbjct: 199 EVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVE 258
Query: 466 FV---KNGKKRIVFARKEIILSAGAINTPHILMHSG 498
+ + + L AG++ + +L+ +
Sbjct: 259 QKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR 294
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 110 bits (274), Expect = 2e-26
Identities = 22/224 (9%), Positives = 54/224 (24%), Gaps = 19/224 (8%)
Query: 292 QPGQCQAMVKQRCRWPRGKGMGGSSVLNYMIYTRGTP--------RDYDRWAAMGNPGWS 343
Q V + + P +G
Sbjct: 66 QGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTH 125
Query: 344 YDEVYPYFLKIENMTIPELRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDY 403
+ P F + + + + + + Y D F ES ++
Sbjct: 126 WTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLA 185
Query: 404 NQPENYLGFSR----IQATTRNGKRVSSYHAYI------EPVRNRPNLHISLNSQVTRVL 453
+ + F + + SS + ++ RV+
Sbjct: 186 EEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVV 245
Query: 454 IDSESKKAYGVEFV-KNGKKRIVFARKEIILSAGAINTPHILMH 496
++ + + + R +L+AGA++ +L++
Sbjct: 246 RNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN 289
Score = 71.9 bits (175), Expect = 7e-14
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 200 HMSGTCRMGINEDG-TTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCAD 258
G+ RMG +E V+ + RV G KNL + +P A+P + K +
Sbjct: 308 PSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 367
Query: 259 MIKDTWSQG 267
IK ++
Sbjct: 368 YIKQNFTPS 376
Score = 71.9 bits (175), Expect = 7e-14
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 727 HMSGTCRMGINEDG-TTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKCAD 785
G+ RMG +E V+ + RV G KNL + +P A+P + K +
Sbjct: 308 PSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 367
Query: 786 MIKDTWSQG 794
IK ++
Sbjct: 368 YIKQNFTPS 376
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
[TaxId: 5061]}
Length = 196
Score = 100 bits (249), Expect = 1e-24
Identities = 36/220 (16%), Positives = 62/220 (28%), Gaps = 33/220 (15%)
Query: 521 NLQDHITMAGLAFTHNTTELFN----YNTMLAQAF----TMMYNISKGGGMGSIPGGVEG 572
NLQD T A + + + + F + + V
Sbjct: 1 NLQDQ-TTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVAR 59
Query: 573 IGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTI 632
GF T + + + A S + + + +
Sbjct: 60 GGFHNT--TALLIQYENYRDWIVNHNVAYSELFLDTAGVAS----------------FDV 101
Query: 633 WPMLLLPKSRGRILLGSRNP-LKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI 691
W LLP +RG + + ++P L YF +E DL ++A N+S + Q
Sbjct: 102 WD--LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTY 159
Query: 692 GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGT 731
+ +PG W +H GT
Sbjct: 160 FAG---ETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT 196
Score = 88.7 bits (219), Expect = 1e-20
Identities = 31/213 (14%), Positives = 57/213 (26%), Gaps = 32/213 (15%)
Query: 1 MAGLAFTHNTTELFN----YNTMLAQAF----TMMYNISKGGGMGSIPGGVEGIGFVQTK 52
A + + + + F + + V GF T
Sbjct: 7 TATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNT- 65
Query: 53 YNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLP 112
+ + + A S + + + +W LLP
Sbjct: 66 -TALLIQYENYRDWIVNHNVAYSELFLDTAGVAS----------------FDVWD--LLP 106
Query: 113 KSRGRILLGSRNP-LKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPV 171
+RG + + ++P L YF +E DL ++A N+S + Q +
Sbjct: 107 FTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAG---E 163
Query: 172 PLPGCKQYEFESDDYWACTARQITATVHHMSGT 204
+PG W +H GT
Sbjct: 164 TIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT 196
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 93.2 bits (230), Expect = 7e-21
Identities = 49/245 (20%), Positives = 83/245 (33%), Gaps = 28/245 (11%)
Query: 302 QRCRWPRGKGMGGSSVLNYMIYTRGTPRDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPE 361
+ G +GG + +N +Y D+ S+ PY K+ +
Sbjct: 78 KDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP---SSWTNHAPYTSKLSSRL--- 131
Query: 362 LRNSPHHSTTGYVPVGYNPYKSQVVDAFLESSKYVNQSTIDYNQPENYLGFSRIQATTRN 421
P Y VV L+ Y + D +++ F N
Sbjct: 132 ----PSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDH-VFGYSAFDFLN 186
Query: 422 GKRVSSYHAYIEPVRNRPNLHISLNSQVTRVLIDSESKKAYGVEF----VKNGKKRIVFA 477
GKR Y++ RPN N V+ V+ + + GV+ + V
Sbjct: 187 GKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTP 244
Query: 478 RKEIILSAGAINTPHILMHSGVGPREHLESLKIKVER-----------DLPVGENLQDHI 526
+ +ILSAGA T IL SG+GP + +++++ +LPVG
Sbjct: 245 KGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSS 304
Query: 527 TMAGL 531
+ +
Sbjct: 305 PQSAV 309
Score = 72.0 bits (175), Expect = 5e-14
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 197 TVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 256
++ G +G + + VVD+ ++V G NL + DA ++P L +P + E+
Sbjct: 291 WINLPVGMTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQA 349
Query: 257 ADMI 260
A I
Sbjct: 350 AAKI 353
Score = 72.0 bits (175), Expect = 5e-14
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 724 TVHHMSGTCRMGINEDGTTVVDNELRVHGIKNLRVADASVMPILIAAHPMAPIYMIGEKC 783
++ G +G + + VVD+ ++V G NL + DA ++P L +P + E+
Sbjct: 291 WINLPVGMTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQA 349
Query: 784 ADMI 787
A I
Sbjct: 350 AAKI 353
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 196
Score = 89.0 bits (220), Expect = 8e-21
Identities = 31/220 (14%), Positives = 63/220 (28%), Gaps = 33/220 (15%)
Query: 521 NLQDHITMAGLAFTHNTTELFNYNTM----LAQAF----TMMYNISKGGGMGSIPGGVEG 572
N+QD T ++ ++ + + F ++ V
Sbjct: 1 NMQDQ-TTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVAR 59
Query: 573 IGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTI 632
GF + + + A + + I + +
Sbjct: 60 GGFHNV--TALKVQYENYRNWLLDEDVAFAELFMDTEGKIN----------------FDL 101
Query: 633 WPMLLLPKSRGRILLGSRNP-LKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRI 691
W L+P +RG + + S +P L +F +E DL K+A +L+ +
Sbjct: 102 WD--LIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEY 159
Query: 692 GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGT 731
+ LPG + + W+ Q H +
Sbjct: 160 FAG---ETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 196
Score = 82.1 bits (202), Expect = 2e-18
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 97 LEQKNTWTIWPMLLLPKSRGRILLGSRNP-LKAPLLYGNYFQDESDLWTLVEGIKMAVNL 155
++ + L+P +RG + + S +P L +F +E DL K+A +L
Sbjct: 91 MDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDL 150
Query: 156 SRTEPFQRIGSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSGT 204
+ + + LPG + + W+ Q H +
Sbjct: 151 TSQGAMKEYFAG---ETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 196
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
dulcis) [TaxId: 3755]}
Length = 170
Score = 78.6 bits (193), Expect = 2e-17
Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 30/169 (17%)
Query: 43 VEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNT 102
V +G + S+ + F S + L
Sbjct: 23 VTVLGI--SNDFYQCSFSSLPFTTPPFGFFPSSSYP------------------LPNSTF 62
Query: 103 WTIWPMLLLPKSRGRI-LLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPF 161
+ P S G + L S N +P + NY+ + +DL V G+K L T+
Sbjct: 63 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 122
Query: 162 QRI-------GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSG 203
+ N + +P K + D + R+ A+ H G
Sbjct: 123 KPYKVEDLPGVEGFNILGIPLPK--DQTDDAAFETFCRESVASYWHYHG 169
Score = 78.6 bits (193), Expect = 2e-17
Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 30/169 (17%)
Query: 570 VEGIGFVQTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNT 629
V +G + S+ + F S + L
Sbjct: 23 VTVLGI--SNDFYQCSFSSLPFTTPPFGFFPSSSYP------------------LPNSTF 62
Query: 630 WTIWPMLLLPKSRGRI-LLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPF 688
+ P S G + L S N +P + NY+ + +DL V G+K L T+
Sbjct: 63 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 122
Query: 689 QRI-------GSKLNPVPLPGCKQYEFESDDYWACTARQITATVHHMSG 730
+ N + +P K + D + R+ A+ H G
Sbjct: 123 KPYKVEDLPGVEGFNILGIPLPK--DQTDDAAFETFCRESVASYWHYHG 169
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome
cellobiose dehydrogenase (CDH), substrate-binding domain
{Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Length = 181
Score = 69.5 bits (169), Expect = 3e-14
Identities = 31/215 (14%), Positives = 64/215 (29%), Gaps = 38/215 (17%)
Query: 521 NLQDHITMAGLAFTHNTTELFNYNTML----AQAFTMMYNISKGGGMGSIPGGVEGIGFV 576
N QD+ L FTH + + + + A Y ++ G + F
Sbjct: 1 NAQDNP-SINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKL---NFW 56
Query: 577 QTKYNTDPSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPML 636
+ +D + G+ + +S T Y +
Sbjct: 57 RAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVY-----------------LS 99
Query: 637 LLPKSRGRILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLN 696
+SRGRI + + L+ +L + + D L++ + V+ + P +
Sbjct: 100 TGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM----- 152
Query: 697 PVPLPGCKQYEFESDDYWACTARQITATVHHMSGT 731
P Q + + + T +H +
Sbjct: 153 --ITPDVTQ----TLEEYVDAYDPATMNSNHWVSS 181
Score = 58.7 bits (141), Expect = 1e-10
Identities = 28/208 (13%), Positives = 60/208 (28%), Gaps = 37/208 (17%)
Query: 1 MAGLAFTHNTTELFNYNTML----AQAFTMMYNISKGGGMGSIPGGVEGIGFVQTKYNTD 56
L FTH + + + + A Y ++ G + F + +D
Sbjct: 7 SINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKL---NFWRAYSGSD 63
Query: 57 PSYPDIEFIFAIGSLAADSGHTVRRGMGITDECYNQAYKHLEQKNTWTIWPMLLLPKSRG 116
+ G+ + +S T Y + +SRG
Sbjct: 64 GFTRYAQGTVRPGAASVNSSLPYNASQIFTITVY-----------------LSTGIQSRG 106
Query: 117 RILLGSRNPLKAPLLYGNYFQDESDLWTLVEGIKMAVNLSRTEPFQRIGSKLNPVPLPGC 176
RI + + L+ +L + + D L++ + V+ + P + P
Sbjct: 107 RIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM-------ITPDV 157
Query: 177 KQYEFESDDYWACTARQITATVHHMSGT 204
Q + + + T +H +
Sbjct: 158 TQ----TLEEYVDAYDPATMNSNHWVSS 181
>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus
faecium [TaxId: 1352]}
Length = 202
Score = 27.5 bits (61), Expect = 5.4
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 329 RDYDRWAAMGNPGWSYDEVYPYFLKIENMTIPELRNSPHHST 370
+ +WAA + + YP + E ++ + + HS
Sbjct: 77 NCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSSHSR 118
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 27.5 bits (59), Expect = 7.3
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 443 ISLNSQVTRVLIDSESKKAYGVEFVKNGKKRIVFARKEIILSAG 486
L++ + VL ++ K GV F +I
Sbjct: 253 YMLDTPIDEVLYKKDTGKFEGV--KTKLGT---FKAPLVIADPT 291
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,090,359
Number of extensions: 148796
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 32
Length of query: 801
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 708
Effective length of database: 1,130,706
Effective search space: 800539848
Effective search space used: 800539848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)