Query psy14644
Match_columns 140
No_of_seqs 126 out of 1137
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 16:58:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.7 6.1E-17 2.1E-21 121.0 8.2 38 28-65 200-237 (510)
2 3odu_A C-X-C chemokine recepto 99.6 1.5E-15 5.2E-20 112.4 4.1 53 13-67 191-243 (502)
3 2rh1_A Beta-2-adrenergic recep 99.5 2.4E-14 8.1E-19 106.6 7.8 39 28-66 201-239 (500)
4 3vw7_A Proteinase-activated re 99.5 7.8E-15 2.7E-19 108.1 4.6 50 14-65 168-220 (484)
5 4dkl_A MU-type opioid receptor 99.5 7.1E-15 2.4E-19 107.6 2.6 51 13-65 161-213 (464)
6 2ks9_A Substance-P receptor; w 99.5 7.5E-14 2.6E-18 99.5 7.6 94 11-139 173-269 (364)
7 3uon_A Human M2 muscarinic ace 99.5 6.2E-14 2.1E-18 102.8 6.9 49 13-66 171-219 (467)
8 3rze_A Histamine H1 receptor, 99.5 1.9E-14 6.6E-19 105.1 4.2 48 14-66 157-204 (452)
9 3sn6_R Lysozyme, beta-2 adrene 99.5 6.1E-14 2.1E-18 104.7 6.4 101 28-139 343-443 (514)
10 3v2y_A Sphingosine 1-phosphate 99.5 1.7E-13 5.6E-18 102.6 8.2 47 13-64 204-250 (520)
11 4amj_A Beta-1 adrenergic recep 99.4 6E-14 2.1E-18 97.8 3.2 82 28-139 172-253 (315)
12 2z73_A Rhodopsin; visual pigme 99.4 4.7E-14 1.6E-18 103.4 2.7 102 13-139 181-282 (448)
13 3eml_A Human adenosine A2A rec 99.4 5.8E-14 2E-18 103.4 2.7 38 30-67 189-226 (488)
14 1u19_A Rhodopsin; G protein-co 99.4 6.6E-14 2.3E-18 99.0 1.9 75 29-139 200-274 (349)
15 4ea3_A Fusion protein of nocic 99.4 1.6E-12 5.5E-17 95.1 8.2 89 12-139 268-358 (434)
16 3pbl_A D(3) dopamine receptor, 99.4 2.1E-12 7.2E-17 95.1 8.1 36 31-66 195-230 (481)
17 4eiy_A Adenosine receptor A2A/ 99.3 5.8E-13 2E-17 97.1 1.1 31 109-139 345-375 (447)
18 2lnl_A C-X-C chemokine recepto 99.3 3.8E-12 1.3E-16 88.5 4.8 70 25-139 166-235 (296)
19 2ki9_A Cannabinoid receptor 2; 99.1 3.1E-12 1.1E-16 60.7 -0.5 27 114-140 2-28 (33)
20 2jx4_A Vasopressin V2 receptor 80.5 0.38 1.3E-05 24.3 0.2 14 53-66 2-15 (52)
21 2rdd_B UPF0092 membrane protei 72.9 4.4 0.00015 18.7 2.8 24 43-66 6-30 (37)
22 1s6c_B Potassium voltage-gated 44.9 7.7 0.00026 17.1 0.7 10 126-135 3-12 (30)
23 3arc_M Photosystem II reaction 39.9 29 0.001 15.9 3.7 21 35-55 8-28 (36)
24 1btq_A BAND 3 anion transport 33.5 24 0.00082 14.9 1.4 18 119-136 2-19 (26)
25 1bzk_A Protein (BAND 3 anion t 26.5 50 0.0017 15.7 2.0 20 117-136 16-35 (43)
26 1jb0_I Photosystem 1 reaction 26.3 58 0.002 15.1 3.4 23 34-56 12-34 (38)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.69 E-value=6.1e-17 Score=120.97 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=32.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14644 28 THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKG 65 (140)
Q Consensus 28 ~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~ 65 (140)
.....|.++.+++.|++|+++|+++|.+|++.++++.+
T Consensus 200 ~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~ 237 (510)
T 4grv_A 200 ATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVN 237 (510)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred chhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 44567777888899999999999999999999987543
No 2
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.56 E-value=1.5e-15 Score=112.37 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=42.3
Q ss_pred CCCcceeeeccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy14644 13 PNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGIN 67 (140)
Q Consensus 13 ~~~~~C~~~~~~~~~~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~ 67 (140)
.+...| ...+++......|.+...++.|++|+++|+++|.+|++.++++.+..
T Consensus 191 ~~~~~C--~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~ 243 (502)
T 3odu_A 191 DDRYIC--DRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNI 243 (502)
T ss_dssp SSSEEE--EECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCH
T ss_pred CCceEE--eecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 345578 44566666667788888889999999999999999999999876653
No 3
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.52 E-value=2.4e-14 Score=106.62 Aligned_cols=39 Identities=23% Similarity=0.543 Sum_probs=34.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14644 28 THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGI 66 (140)
Q Consensus 28 ~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~ 66 (140)
.....|.+...++.|++|+++|+++|.+|++.++++.+.
T Consensus 201 ~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~ 239 (500)
T 2rh1_A 201 FTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNI 239 (500)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888999999999999999999999987665
No 4
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.51 E-value=7.8e-15 Score=108.10 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=37.2
Q ss_pred CCcceeeeccccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14644 14 NFTQCVSFNSFASDT---HERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKG 65 (140)
Q Consensus 14 ~~~~C~~~~~~~~~~---~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~ 65 (140)
+...| ...++... ....|.+...++.|++|+++|+++|.+|++.++++.+
T Consensus 168 ~~~~C--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~ 220 (484)
T 3vw7_A 168 GITTC--HDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSAN 220 (484)
T ss_dssp TEEEE--SSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCcee--eccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhH
Confidence 44578 34444332 2334667777888999999999999999999998765
No 5
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.49 E-value=7.1e-15 Score=107.63 Aligned_cols=51 Identities=14% Similarity=0.337 Sum_probs=38.0
Q ss_pred CCCcceeeeccccCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14644 13 PNFTQCVSFNSFASD--THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKG 65 (140)
Q Consensus 13 ~~~~~C~~~~~~~~~--~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~ 65 (140)
.+...|. ..+... .....|.+..+++.|++|+++|+++|.+|++.++++.+
T Consensus 161 ~~~~~c~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~ 213 (464)
T 4dkl_A 161 QGSIDCT--LTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRN 213 (464)
T ss_dssp TTEEECC--BCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred CCCceEE--eecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455673 333322 23556788888889999999999999999999987655
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.48 E-value=7.5e-14 Score=99.54 Aligned_cols=94 Identities=19% Similarity=0.435 Sum_probs=67.5
Q ss_pred CCCCCcceeeeccccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCccccCCCcee
Q psy14644 11 GHPNFTQCVSFNSFASD---THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKL 87 (140)
Q Consensus 11 ~~~~~~~C~~~~~~~~~---~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
+.++...|. ..+++. .....|.+...++.|++|+++|+++|.+|++.++++......
T Consensus 173 ~~~~~~~C~--~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~------------------ 232 (364)
T 2ks9_A 173 TMPSRVVCM--IEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDS------------------ 232 (364)
T ss_dssp BCTTCSSBC--CCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSS------------------
T ss_pred ecCCCCEEe--ecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------------
Confidence 344556783 334432 234578888888899999999999999999988764332110
Q ss_pred eeeccCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy14644 88 ATVLDSTPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139 (140)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~vv~~F~icW~Py~i~~l 139 (140)
..+.+...++++|+++++++++++|++||+||++..+
T Consensus 233 ---------------~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~ 269 (364)
T 2ks9_A 233 ---------------SDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFL 269 (364)
T ss_dssp ---------------SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------chhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111224566789999999999999999999988754
No 7
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.48 E-value=6.2e-14 Score=102.80 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCCcceeeeccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14644 13 PNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGI 66 (140)
Q Consensus 13 ~~~~~C~~~~~~~~~~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~ 66 (140)
.+...|. ..+. ....|.+...++.|++|+++|+++|.+|++.++++.+.
T Consensus 171 ~~~~~C~--~~~~---~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~ 219 (467)
T 3uon_A 171 VEDGECY--IQFF---SNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINI 219 (467)
T ss_dssp CCSSCCC--CGGG---GSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCcce--eecC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445683 2222 34568888888999999999999999999999987653
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=105.08 Aligned_cols=48 Identities=19% Similarity=0.504 Sum_probs=36.8
Q ss_pred CCcceeeeccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14644 14 NFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGI 66 (140)
Q Consensus 14 ~~~~C~~~~~~~~~~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~ 66 (140)
....|. ..+ .....|.++..++.|++|+++|+++|.+|++.++++.+.
T Consensus 157 ~~~~C~--~~~---~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~ 204 (452)
T 3rze_A 157 REDKCE--TDF---YDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNI 204 (452)
T ss_dssp CSSSSC--CSC---TTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCH
T ss_pred CCCeec--CCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 455672 223 234568888888999999999999999999999887554
No 9
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.47 E-value=6.1e-14 Score=104.68 Aligned_cols=101 Identities=22% Similarity=0.378 Sum_probs=62.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCccccCCCceeeeeccCCCCCCccccccccc
Q psy14644 28 THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVS 107 (140)
Q Consensus 28 ~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (140)
.....|.+...++.|++|+++|+++|.+|++.++++.++.............. ......+.....++..
T Consensus 343 ~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 411 (514)
T 3sn6_R 343 FTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLS-----------QVEQDGRTGHGLRRSS 411 (514)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc-----------cccccccccccccchh
Confidence 34567888889999999999999999999999998766543221110000000 0000000011111222
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy14644 108 NINKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139 (140)
Q Consensus 108 ~~~~~~~r~~~~l~~vv~~F~icW~Py~i~~l 139 (140)
...++++|+++++++++++|++||+||.++.+
T Consensus 412 ~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~ 443 (514)
T 3sn6_R 412 KFCLKEHKALKTLGIIMGTFTLCWLPFFIVNI 443 (514)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999998765
No 10
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.46 E-value=1.7e-13 Score=102.61 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=33.9
Q ss_pred CCCcceeeeccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14644 13 PNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRK 64 (140)
Q Consensus 13 ~~~~~C~~~~~~~~~~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~ 64 (140)
.+...| .+.++. ....|.++ .++.|++|+++|++||.+|++.++++.
T Consensus 204 ~~~~~C--~~~~~~--~~~~~~~~-~~~~~~lPl~ii~~~Y~~I~~~l~~~~ 250 (520)
T 3v2y_A 204 SALSSC--STVLPL--YHKHYILF-CTTVFTLLLLSIVILYCRIYSLVRTRN 250 (520)
T ss_dssp TCGGGB--CSSSTT--BBHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcc--cccCCc--cchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445578 334432 34455554 445699999999999999999999875
No 11
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.42 E-value=6e-14 Score=97.76 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=59.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCccccCCCceeeeeccCCCCCCccccccccc
Q psy14644 28 THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVS 107 (140)
Q Consensus 28 ~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (140)
.....|.+...++.|++|+++|+++|.+|++.++++.++.... ..+...+
T Consensus 172 ~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~------------------------------~~~~~~~ 221 (315)
T 4amj_A 172 VTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRA------------------------------SKRKTSR 221 (315)
T ss_dssp CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC------------------------------------------CH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc------------------------------cccccch
Confidence 4566788888888899999999999999999999876543210 0111122
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy14644 108 NINKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139 (140)
Q Consensus 108 ~~~~~~~r~~~~l~~vv~~F~icW~Py~i~~l 139 (140)
...++++|+++++++++++|++||+||++..+
T Consensus 222 ~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~ 253 (315)
T 4amj_A 222 VMLMREHKALKTLGIIMGVFTLCWLPFFLVNI 253 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456789999999999999999999998764
No 12
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.42 E-value=4.7e-14 Score=103.39 Aligned_cols=102 Identities=22% Similarity=0.429 Sum_probs=67.4
Q ss_pred CCCcceeeeccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCccccCCCceeeeecc
Q psy14644 13 PNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLATVLD 92 (140)
Q Consensus 13 ~~~~~C~~~~~~~~~~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (140)
+....|.. ++.........|.+...++.|++|+++|+++|.+|++.++++.++.......
T Consensus 181 ~~~~~c~~-~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~------------------- 240 (448)
T 2z73_A 181 GVLCNCSF-DYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR------------------- 240 (448)
T ss_dssp TTSSSEEE-CCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTT-------------------
T ss_pred CCceeEec-ccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 34456742 2222233455677777788899999999999999999999876654311000
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy14644 93 STPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139 (140)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~vv~~F~icW~Py~i~~l 139 (140)
. + ....++.....++++|+++++++++++|++||+|++++.+
T Consensus 241 -~-~---~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~ 282 (448)
T 2z73_A 241 -L-N---AKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVAL 282 (448)
T ss_dssp -T-C---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -h-h---hHHHHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0 0 0000111123456789999999999999999999988764
No 13
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.41 E-value=5.8e-14 Score=103.36 Aligned_cols=38 Identities=18% Similarity=0.495 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy14644 30 ERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGIN 67 (140)
Q Consensus 30 ~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~ 67 (140)
...|.++.+++.|++|+++|+++|.+|++.++++.+..
T Consensus 189 ~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~ 226 (488)
T 3eml_A 189 MNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIF 226 (488)
T ss_dssp HHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred chhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566666788899999999999999999999876553
No 14
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.39 E-value=6.6e-14 Score=99.03 Aligned_cols=75 Identities=23% Similarity=0.565 Sum_probs=59.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCccccCCCceeeeeccCCCCCCcccccccccc
Q psy14644 29 HERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSN 108 (140)
Q Consensus 29 ~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (140)
....|.+...++.+++|+++|+++|.+|++.++++.++.. +...
T Consensus 200 ~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~------------------------------------~~~~ 243 (349)
T 1u19_A 200 NNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ------------------------------------ESAT 243 (349)
T ss_dssp THHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC------------------------------------SSSH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------------------------------------cchh
Confidence 4567888888888999999999999999998876544321 1122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy14644 109 INKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139 (140)
Q Consensus 109 ~~~~~~r~~~~l~~vv~~F~icW~Py~i~~l 139 (140)
..++++|+++++++++++|++||+||.+..+
T Consensus 244 ~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~ 274 (349)
T 1u19_A 244 TQKAEKEVTRMVIIMVIAFLICWLPYAGVAF 274 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566789999999999999999999987654
No 15
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=95.10 Aligned_cols=89 Identities=12% Similarity=0.348 Sum_probs=65.8
Q ss_pred CCCCcceeeeccccCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCccccCCCceeee
Q psy14644 12 HPNFTQCVSFNSFASD--THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLAT 89 (140)
Q Consensus 12 ~~~~~~C~~~~~~~~~--~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
..+...|.. .++.. .....|.+...++.|++|+++|+++|.+|++.++++.....
T Consensus 268 ~~~~~~c~~--~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~--------------------- 324 (434)
T 4ea3_A 268 EDEEIECLV--EIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSG--------------------- 324 (434)
T ss_dssp CSSCCCEEE--CCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCSSCSS---------------------
T ss_pred ecCceeEEE--ecCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------------------
Confidence 334567842 33322 33466778888899999999999999999999986543211
Q ss_pred eccCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy14644 90 VLDSTPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139 (140)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~vv~~F~icW~Py~i~~l 139 (140)
.....++++|+++++++++++|++||+||.++.+
T Consensus 325 ----------------~~~~~~~~~~~~~~~~~vv~~F~i~w~P~~i~~~ 358 (434)
T 4ea3_A 325 ----------------SREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVL 358 (434)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223456789999999999999999999998764
No 16
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.36 E-value=2.1e-12 Score=95.06 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy14644 31 RYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGI 66 (140)
Q Consensus 31 ~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~ 66 (140)
..|.+...++.|++|+++|+++|.+|++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~ 230 (481)
T 3pbl_A 195 PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRK 230 (481)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 347777888899999999999999999999987654
No 17
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.27 E-value=5.8e-13 Score=97.13 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy14644 109 INKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139 (140)
Q Consensus 109 ~~~~~~r~~~~l~~vv~~F~icW~Py~i~~l 139 (140)
..++++|++||+++++++|++||+||+++.+
T Consensus 345 ~~~~~~r~~k~l~~vv~~F~icw~P~~i~~~ 375 (447)
T 4eiy_A 345 TLQKEVHAAKSLAIIVGLFALCWLPLHIINC 375 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhheeccHHHHHHH
Confidence 3456789999999999999999999999865
No 18
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.26 E-value=3.8e-12 Score=88.54 Aligned_cols=70 Identities=17% Similarity=0.452 Sum_probs=54.9
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCccccCCCceeeeeccCCCCCCcccccc
Q psy14644 25 ASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMN 104 (140)
Q Consensus 25 ~~~~~~~~y~~~~~~~~f~iP~~im~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (140)
........|.+....+.+++|+.+|.++|.++.+.++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~----------------------------------------- 204 (296)
T 2lnl_A 166 DTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA----------------------------------------- 204 (296)
T ss_dssp CTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC-----------------------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 333455678888888999999999999999876544322
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy14644 105 DVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139 (140)
Q Consensus 105 ~~~~~~~~~~r~~~~l~~vv~~F~icW~Py~i~~l 139 (140)
..++++|++||+.+++++|++||+||+++.+
T Consensus 205 ----~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~ 235 (296)
T 2lnl_A 205 ----HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLL 235 (296)
T ss_dssp ----CCHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhhhHHHHHHHhhhheeeeehHHHHHHH
Confidence 1234578999999999999999999998754
No 19
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=99.14 E-value=3.1e-12 Score=60.70 Aligned_cols=27 Identities=19% Similarity=0.550 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcC
Q psy14644 114 IRTLKMTVIIVLTFFWCWTPYVIMTVW 140 (140)
Q Consensus 114 ~r~~~~l~~vv~~F~icW~Py~i~~l~ 140 (140)
+|++|++++++++|++||+||++..++
T Consensus 2 ~k~~k~l~~vv~~F~icW~P~~i~~~~ 28 (33)
T 2ki9_A 2 VRLAKTLGLVLAVLLICWFPVLALMAH 28 (33)
T ss_dssp CSSSSHHHHHHHHHTTTSSHHHHHHTT
T ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 578899999999999999999998764
No 20
>2jx4_A Vasopressin V2 receptor; protein, G-protein coupled receptor, glycoprotein, lipoprotein, membrane, palmitate, phosphorylation, receptor transducer; HET: DGN NLE CCS; NMR {Synthetic}
Probab=80.51 E-value=0.38 Score=24.30 Aligned_cols=14 Identities=14% Similarity=0.012 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhcc
Q psy14644 53 YFNIYVEVSKRKGI 66 (140)
Q Consensus 53 Y~~I~~~l~~~~~~ 66 (140)
|.+|++.+|++.+.
T Consensus 2 y~~I~~~Iw~~~~~ 15 (52)
T 2jx4_A 2 QVLIFREIHASLVP 15 (52)
T ss_dssp CHHHHHHHHHHHTH
T ss_pred eEEEEeHHHhhCCc
Confidence 67888888887653
No 21
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=72.86 E-value=4.4 Score=18.69 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=15.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhcc
Q psy14644 43 VIPMCII-VFSYFNIYVEVSKRKGI 66 (140)
Q Consensus 43 ~iP~~im-~~~Y~~I~~~l~~~~~~ 66 (140)
++|++++ ++.|..+.+--+|+.+.
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K~ 30 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTKE 30 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3454444 56788888877766554
No 22
>1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus}
Probab=44.91 E-value=7.7 Score=17.09 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=7.6
Q ss_pred HHHHhhhhhh
Q psy14644 126 TFFWCWTPYV 135 (140)
Q Consensus 126 ~F~icW~Py~ 135 (140)
.|+-||+||.
T Consensus 3 a~v~~w~~fa 12 (30)
T 1s6c_B 3 AGVAAWLPFA 12 (30)
T ss_dssp HHHHTTHHHH
T ss_pred hhhhhhcccc
Confidence 4678999973
No 23
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=39.93 E-value=29 Score=15.89 Aligned_cols=21 Identities=10% Similarity=0.469 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14644 35 YFTVVVMYVIPMCIIVFSYFN 55 (140)
Q Consensus 35 ~~~~~~~f~iP~~im~~~Y~~ 55 (140)
.....++..+|....+..|.+
T Consensus 8 fiAt~Lfi~iPt~FLlilYvq 28 (36)
T 3arc_M 8 LIATALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhe
Confidence 345566678898888888874
No 24
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=33.55 E-value=24 Score=14.91 Aligned_cols=18 Identities=11% Similarity=0.462 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhhhhh
Q psy14644 119 MTVIIVLTFFWCWTPYVI 136 (140)
Q Consensus 119 ~l~~vv~~F~icW~Py~i 136 (140)
.+..++..|+.|-+|-..
T Consensus 2 ~laa~~FlyFa~l~paIa 19 (26)
T 1btq_A 2 VLAAVIFIYFAALSPAIT 19 (26)
T ss_pred hHHHHHHHHHHHHcchhc
Confidence 467788899999888543
No 25
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.48 E-value=50 Score=15.73 Aligned_cols=20 Identities=10% Similarity=0.403 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q psy14644 117 LKMTVIIVLTFFWCWTPYVI 136 (140)
Q Consensus 117 ~~~l~~vv~~F~icW~Py~i 136 (140)
.+.+..++.+|+.|-+|-..
T Consensus 16 ~~~laa~~fiyFa~l~PaIa 35 (43)
T 1bzk_A 16 PQVLAAVIFIYFAALSPAIT 35 (43)
T ss_dssp SHHHHHHHHHHHHTSTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999644
No 26
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=26.29 E-value=58 Score=15.11 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14644 34 NYFTVVVMYVIPMCIIVFSYFNI 56 (140)
Q Consensus 34 ~~~~~~~~f~iP~~im~~~Y~~I 56 (140)
.++.=+++.+.|.+.|+.++..|
T Consensus 12 sI~VPlVglvfPai~Mallf~yI 34 (38)
T 1jb0_I 12 WIFIPVVCWLMPTVVMGLLFLYI 34 (38)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHHHhh
Confidence 34455677788988888765543
Done!