RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14644
         (140 letters)



>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
           This family contains, amongst other G-protein-coupled
           receptors (GCPRs), members of the opsin family, which
           have been considered to be typical members of the
           rhodopsin superfamily. They share several motifs, mainly
           the seven transmembrane helices, GCPRs of the rhodopsin
           superfamily. All opsins bind a chromophore, such as
           11-cis-retinal. The function of most opsins other than
           the photoisomerases is split into two steps: light
           absorption and G-protein activation. Photoisomerases, on
           the other hand, are not coupled to G-proteins - they are
           thought to generate and supply the chromophore that is
           used by visual opsins.
          Length = 251

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 35/139 (25%)

Query: 2   YIFHVASPPGHPNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVS 61
            +F         N T C     F  ++ +R Y   + ++ +V+P+ +I+  Y  I   + 
Sbjct: 114 LLFSWLRTVEEGNVTTC--LIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLR 171

Query: 62  KRKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNINKTRIRTLKMTV 121
           KR         R+         +                              +  KM +
Sbjct: 172 KR--------ARSGASQARAKRSS-------------------------SKERKAAKMLL 198

Query: 122 IIVLTFFWCWTPYVIMTVW 140
           ++V+ F  CW PY I+ + 
Sbjct: 199 VVVVVFVLCWLPYHIVLLL 217


>gnl|CDD|226109 COG3581, COG3581, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 420

 Score = 27.8 bits (62), Expect = 2.3
 Identities = 9/59 (15%), Positives = 19/59 (32%)

Query: 51  FSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNI 109
           F  ++IY ++   K   F   ++  +   I   N     +  +         M  +  I
Sbjct: 243 FILYSIYNKIFDLKISGFKNKSKLKKKVAITAINYFEKPMKKALKLSKRFDPMKSIKKI 301


>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
           protein; Provisional.
          Length = 335

 Score = 27.4 bits (61), Expect = 2.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 107 SNINKTRIRTLKMTVIIVLTFFWCWTPY 134
            N +K   + +K+ +IIV+ F   W P+
Sbjct: 233 INKSKKNKKAIKLVLIIVILFVIFWLPF 260


>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase.
          Length = 223

 Score = 27.0 bits (60), Expect = 3.5
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 69  CGTNRALRGNIIDNSNVKLATVLDSTP---GGTIRLRMNDVSNINKTRIRTLKMTVIIVL 125
           CG   +L   I  +S  ++  + DS     GGT    +++++++  T+IR  K    +  
Sbjct: 164 CG--GSLPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIRVKKGVTRVSY 221

Query: 126 T 126
           T
Sbjct: 222 T 222


>gnl|CDD|218438 pfam05108, DUF690, Protein of unknown function (DUF690).  This
           family contains several uncharacterized bacterial
           membrane proteins.
          Length = 481

 Score = 26.3 bits (58), Expect = 5.9
 Identities = 9/28 (32%), Positives = 10/28 (35%)

Query: 6   VASPPGHPNFTQCVSFNSFASDTHERYY 33
           V   PG  NF    S    A  T   Y+
Sbjct: 396 VYLDPGTANFVALTSGGPDARGTESLYW 423


>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit.
          Length = 821

 Score = 25.8 bits (57), Expect = 9.5
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 33  YNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLATVLD 92
           +  FT   + VI +            E ++R G NF GT + L G I + + +  A  L 
Sbjct: 2   FERFTEKAIKVIMLS----------QEEARRLGHNFVGTEQILLGLIGEGTGIA-ARALK 50

Query: 93  STPGGTIRLRMNDVSNINK 111
           S  G T++    +V  I  
Sbjct: 51  SM-GVTLKDARIEVEKIIG 68


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.141    0.456 

Gapped
Lambda     K      H
   0.267   0.0781    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,082,917
Number of extensions: 619131
Number of successful extensions: 814
Number of sequences better than 10.0: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 22
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.5 bits)