RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14644
(140 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 54.2 bits (130), Expect = 1e-09
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 12 HPNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGT 71
C SF+ + D+ R ++ + P+ II F YFNI + VS +
Sbjct: 180 EGVLCNC-SFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA 238
Query: 72 NRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCW 131
R + +R K++++IV F W
Sbjct: 239 KRLNAKELRKAQAGA------------------------NAEMRLAKISIVIVSQFLLSW 274
Query: 132 TPYVIMTVW 140
+PY ++ +
Sbjct: 275 SPYAVVALL 283
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 53.9 bits (130), Expect = 1e-09
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 34/129 (26%)
Query: 13 PNFTQC-VSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGT 71
P+ C + + + +E+ Y+ V++Y +P+ +I ++Y + + + +
Sbjct: 175 PSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASE------- 227
Query: 72 NRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCW 131
PG + + + +KM +++V TF CW
Sbjct: 228 ----------------------IPGD----SSDRYHEQVSAKRKVVKMMIVVVCTFAICW 261
Query: 132 TPYVIMTVW 140
P+ I +
Sbjct: 262 LPFHIFFLL 270
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 50.1 bits (120), Expect = 2e-08
Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 45/149 (30%)
Query: 1 IYIFHVASPPG--------HPNFTQC-VSFNSFASDTHERYYNYFTVVVMYVIPMCIIVF 51
+ A+PP C + + + +T+ + + VV ++IP+ +I F
Sbjct: 163 VMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFF 222
Query: 52 SYFNIYVEVSKRKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNINK 111
Y + V + + + + K
Sbjct: 223 CYGQLVFTVKE------------------------------------AAAQQQESATTQK 246
Query: 112 TRIRTLKMTVIIVLTFFWCWTPYVIMTVW 140
+M +I+V+ F CW PY + +
Sbjct: 247 AEKEVTRMVIIMVIAFLICWLPYAGVAFY 275
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 50.2 bits (120), Expect = 3e-08
Identities = 12/129 (9%), Positives = 35/129 (27%), Gaps = 37/129 (28%)
Query: 12 HPNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKRKGINFCGT 71
+C+ D + + +++P+ +I Y + + +
Sbjct: 268 EDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVR------- 320
Query: 72 NRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCW 131
++ ++ R ++ +++V F CW
Sbjct: 321 ------------------------------LLSGSREKDRNLRRITRLVLVVVAVFVGCW 350
Query: 132 TPYVIMTVW 140
TP + +
Sbjct: 351 TPVQVFVLA 359
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 38.4 bits (89), Expect = 4e-04
Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 11/139 (7%)
Query: 1 IYIFHVASPPGHPNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEV 60
+ I H C + + + Y + +V + +P+ I+VF Y ++ E
Sbjct: 316 LPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 375
Query: 61 SKRKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNINKTRIRTLKMT 120
++ L+ + + G + S + LK
Sbjct: 376 KRQ-----------LQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTL 424
Query: 121 VIIVLTFFWCWTPYVIMTV 139
II+ TF CW P+ I+ +
Sbjct: 425 GIIMGTFTLCWLPFFIVNI 443
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 35.4 bits (81), Expect = 0.003
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 98 TIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTVW 140
T R D ++ R +M +++V F CWTP I +
Sbjct: 363 TFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVII 405
Score = 32.7 bits (74), Expect = 0.031
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 12 HPNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNI 56
C S + E + +++P+ II Y +
Sbjct: 160 RQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLM 204
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 33.6 bits (76), Expect = 0.013
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 24 FASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKR 63
F Y YF ++P+ +++ Y I++ ++
Sbjct: 183 FEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQ 222
Score = 30.1 bits (67), Expect = 0.23
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 93 STPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTVW 140
+ + + + K IIV F CW P I+ +
Sbjct: 370 RVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCF 417
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 33.1 bits (75), Expect = 0.021
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 28 THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKR 63
+ T + + +P+ I+ Y++I R
Sbjct: 181 FSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSR 216
Score = 27.0 bits (59), Expect = 2.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 115 RTLKMTVIIVLTFFWCWTPYVIMTV 139
+ + + I+L F W PY +M +
Sbjct: 385 KVTRTILAILLAFIITWAPYNVMVL 409
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 33.1 bits (75), Expect = 0.023
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 24 FASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKR 63
F Y YF ++P+ +++ Y I++ ++
Sbjct: 193 FEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQ 232
Score = 26.9 bits (59), Expect = 2.2
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 91 LDSTPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTVW 140
L +T I+ + + + + K IIV F CW P I+ +
Sbjct: 327 LKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCF 376
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 32.4 bits (73), Expect = 0.034
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 28 THERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKR-KGINFCGTNRALRGNIIDNSN 84
++ T ++ + +P ++++ Y IY V + + LR I ++
Sbjct: 166 YDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTE 223
Score = 26.2 bits (57), Expect = 4.2
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 115 RTLKMTVIIVLTFFWCWTPYVIMTV 139
+ K I+ F CW PY I +
Sbjct: 370 KAAKQLGFIMAAFILCWIPYFIFFM 394
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 32.0 bits (73), Expect = 0.045
Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 30/137 (21%)
Query: 3 IFHVASPPGHPNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSK 62
I P +C R Y + ++ + IP+ I++F +Y E +
Sbjct: 147 IMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKE 206
Query: 63 RKGINFCGTNRALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNINKTRIRTLKMTVI 122
+ + + + + LK I
Sbjct: 207 QIRKIDRAS------------------------------KRKTSRVMLMREHKALKTLGI 236
Query: 123 IVLTFFWCWTPYVIMTV 139
I+ F CW P+ ++ +
Sbjct: 237 IMGVFTLCWLPFFLVNI 253
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 31.2 bits (70), Expect = 0.100
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 95 PGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTVW 140
T R D + LK II+ TF CW P+ I+ +
Sbjct: 385 VITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIV 430
Score = 28.9 bits (64), Expect = 0.65
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 30 ERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKR 63
+ Y + +V + +P+ I+VF Y ++ E ++
Sbjct: 203 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQ 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.14
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 33/97 (34%)
Query: 44 IPMCIIVFSYFNIYVEVSKRKGINFCGTNRALRGNIID----------NSNVKLAT-VLD 92
IP V+ F+ G + + ++ I+D + AT +LD
Sbjct: 457 IP----VYDTFD---------GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 93 STPGGTIRLRMNDVSNINK--TRIRTLKMTVIIVLTF 127
PGG L +++ NK T +R VI+ T
Sbjct: 504 FGPGGASGL--GVLTHRNKDGTGVR-----VIVAGTL 533
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 30.3 bits (68), Expect = 0.22
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 12 HPNFTQCVSFNSFASDTHERYYNYFTVVVMYVIPMCIIVFSYFNI 56
+ C + +D + + ++V ++P +I+ Y I
Sbjct: 190 ADDRYIC--DRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCII 232
Score = 26.8 bits (59), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 108 NINKTRIRTLKMTVIIVLTFFWCWTPYVIMTVW 140
+ + + LK TVI++L FF CW PY I
Sbjct: 403 SKGHQKRKALKTTVILILAFFACWLPYYIGISI 435
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 29.3 bits (65), Expect = 0.44
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 30 ERYYNYFTVVVMYVIPMCIIVFSYFNIYVEVSKR 63
+ ++ VV + +P + V Y IYV + +R
Sbjct: 194 NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQR 227
Score = 27.4 bits (60), Expect = 2.0
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 93 STPGGTIRLRMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTV 139
T R D + + +M I++ F CW P+ + V
Sbjct: 376 KRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHV 422
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 27.9 bits (61), Expect = 1.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 110 NKTRIRTLKMTVIIVLTFFWCWTPYVIMTVW 140
+ + LK +I++ F CW P I+ +
Sbjct: 413 SSENVALLKTVIIVLSVFIACWAPLFILLLL 443
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.456
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,216,233
Number of extensions: 120501
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 37
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.3 bits)