RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14644
         (140 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 28.0 bits (61), Expect = 0.43
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 102 RMNDVSNINKTRIRTLKMTVIIVLTFFWCWTPYVIMTVW 140
           +  + +   K      +M +I+V+ F  CW PY  +  +
Sbjct: 236 QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY 274


>d1pyya3 d.175.1.1 (A:73-263) Penicillin-binding protein 2x
           (pbp-2x), N-terminal domain {Streptococcus pneumoniae
           [TaxId: 1313]}
          Length = 191

 Score = 24.6 bits (52), Expect = 4.9
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 74  ALRGNIIDNSNVKLATVLDSTPGGTIRLRMNDVSNINKTRIRTLK 118
           A RG I D + V +A          +   +++       +I  ++
Sbjct: 2   AKRGTIYDRNGVPIAE---DATSYNVYAVIDENYKSATGKILYVE 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.456 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 568,416
Number of extensions: 24486
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 7
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.8 bits)