Query psy14646
Match_columns 366
No_of_seqs 203 out of 1236
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:00:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.8 2E-19 7E-24 156.9 12.3 124 38-206 7-152 (154)
2 3h08_A RNH (ribonuclease H); R 99.8 1.1E-18 3.6E-23 150.8 11.0 119 40-206 6-145 (146)
3 2kq2_A Ribonuclease H-related 99.8 8.3E-19 2.8E-23 152.4 7.5 126 38-207 6-139 (147)
4 1jl1_A Ribonuclease HI; RNAse 99.8 2.9E-18 9.9E-23 150.0 11.0 120 40-207 6-145 (155)
5 3qio_A GAG-POL polyprotein; RN 99.8 4.9E-18 1.7E-22 148.2 12.2 119 38-205 12-147 (150)
6 2e4l_A Ribonuclease HI, RNAse 99.7 4.9E-18 1.7E-22 149.1 11.0 118 40-205 8-145 (158)
7 3p1g_A Xenotropic murine leuke 99.7 2.5E-17 8.6E-22 146.1 12.0 120 40-206 25-157 (165)
8 1ril_A Ribonuclease H; hydrola 99.7 3.6E-17 1.2E-21 144.8 8.7 120 40-206 10-149 (166)
9 2lsn_A Reverse transcriptase; 99.6 5.9E-16 2E-20 137.3 10.8 122 40-205 9-163 (165)
10 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 9.3E-15 3.2E-19 151.6 13.1 115 39-203 437-555 (555)
11 2zd1_A Reverse transcriptase/r 99.6 6.1E-15 2.1E-19 153.1 11.5 114 39-202 440-557 (557)
12 2ehg_A Ribonuclease HI; RNAse 99.6 2.7E-14 9.2E-19 123.2 12.0 108 51-206 16-135 (149)
13 3u3g_D Ribonuclease H, RNAse H 99.5 2.3E-14 7.9E-19 121.1 11.2 107 51-205 17-137 (140)
14 3hst_B Protein RV2228C/MT2287; 99.5 4.3E-14 1.5E-18 120.0 12.6 108 51-206 17-134 (141)
15 1zbf_A Ribonuclease H-related 98.6 4.4E-08 1.5E-12 84.5 5.1 115 40-197 13-139 (142)
16 4htu_A Ribonuclease H, RNAse H 97.7 4.5E-05 1.5E-09 65.0 5.5 74 41-157 8-83 (134)
17 2z3g_A Blasticidin-S deaminase 38.3 52 0.0018 26.9 5.5 60 23-89 6-65 (130)
18 2fr5_A Cytidine deaminase; tet 35.7 71 0.0024 26.8 6.1 61 23-89 14-76 (146)
19 1uwz_A Cytidine deaminase; CDD 33.1 90 0.0031 25.7 6.2 41 49-89 22-64 (136)
20 2d30_A Cytidine deaminase; pur 31.9 92 0.0032 25.9 6.1 60 24-89 12-73 (141)
21 1r5t_A Cytidine deaminase; zin 23.8 1.5E+02 0.0051 24.5 6.0 60 24-89 11-72 (142)
22 2b3j_A TRNA adenosine deaminas 21.3 1.6E+02 0.0054 24.7 5.8 39 49-89 25-67 (159)
23 3b8f_A Putative blasticidin S 20.6 52 0.0018 27.4 2.5 59 23-89 3-63 (142)
24 2nx8_A TRNA-specific adenosine 20.3 1.1E+02 0.0039 26.3 4.7 39 49-89 34-76 (179)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.80 E-value=2e-19 Score=156.89 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=92.2
Q ss_pred cceeeCCCccC-CCC----ceeEEEEEecCCe-eEEEEcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhh
Q psy14646 38 FPICSSSPIDL-DET----GVGCALTIPQLNE-TKRFALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHEL 111 (366)
Q Consensus 38 ~~~~~~~~~~~-~~~----~~g~a~~~~~~~~-~~~~~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (366)
...+|+ |++- .++ ..|+|+++..... .....++..+|++.||+.|+..||++
T Consensus 7 ~~~iyt-DGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~--------------------- 64 (154)
T 2qkb_A 7 FVVVYT-DGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQ--------------------- 64 (154)
T ss_dssp EEEEEE-EEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHH---------------------
T ss_pred eEEEEE-ccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHH---------------------
Confidence 345666 4443 333 2688888765332 34556766789999999999999993
Q ss_pred hHHHHHHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhccC---------C-------CchHHHHHHHHHhcCC
Q psy14646 112 KDKLLQQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNLY---------H-------PNPLVKKIQEEYSNSQ 175 (366)
Q Consensus 112 ~~~~~~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~~---------~-------~~~i~~~I~~~l~~~~ 175 (366)
+.+.+..+|.|+|||++++++|..+. . ..+++++|.+++. +
T Consensus 65 ---------------------~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~--~ 121 (154)
T 2qkb_A 65 ---------------------AKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ--G 121 (154)
T ss_dssp ---------------------HHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT--T
T ss_pred ---------------------HHhCCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc--C
Confidence 33345789999999999999998741 1 1145666666655 3
Q ss_pred CcEEEEEeccccccccchhhHHHHHHHhccc
Q psy14646 176 ANIKFLWCPSHVSISGNERAEECYSNYLASV 206 (366)
Q Consensus 176 ~~V~~~WVPgH~Gi~GNE~AD~lAk~A~~~~ 206 (366)
..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 122 ~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 122 MDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp CEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred CceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999864
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.77 E-value=1.1e-18 Score=150.79 Aligned_cols=119 Identities=16% Similarity=0.048 Sum_probs=87.1
Q ss_pred eeeCCCcc-CCC-CceeEEEEEecCCeeEEE--EcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHH
Q psy14646 40 ICSSSPID-LDE-TGVGCALTIPQLNETKRF--ALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKL 115 (366)
Q Consensus 40 ~~~~~~~~-~~~-~~~g~a~~~~~~~~~~~~--~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (366)
++|+ |++ ..+ +..|+|+++...+....+ .+ ..+|++.||+.|+..||+.+
T Consensus 6 ~iyt-DGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~------------------------ 59 (146)
T 3h08_A 6 TIYT-DGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEAL------------------------ 59 (146)
T ss_dssp EEEE-EEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTC------------------------
T ss_pred EEEE-ecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhc------------------------
Confidence 4566 444 232 346677777665533332 23 36899999999999999942
Q ss_pred HHHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhc-cC----------------CCchHHHHHHHHHhcCCCcE
Q psy14646 116 LQQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISN-LY----------------HPNPLVKKIQEEYSNSQANI 178 (366)
Q Consensus 116 ~~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~-~~----------------~~~~i~~~I~~~l~~~~~~V 178 (366)
.+ ..+|.|+|||++++++|.. +. ...++.+.+.++++. ..|
T Consensus 60 ------------------~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~--~~v 117 (146)
T 3h08_A 60 ------------------KE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL--HRV 117 (146)
T ss_dssp ------------------SS--CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH--SEE
T ss_pred ------------------Cc--cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh--Cce
Confidence 22 5799999999999999987 21 112467777777664 469
Q ss_pred EEEEeccccccccchhhHHHHHHHhccc
Q psy14646 179 KFLWCPSHVSISGNERAEECYSNYLASV 206 (366)
Q Consensus 179 ~~~WVPgH~Gi~GNE~AD~lAk~A~~~~ 206 (366)
.|.|||||+|++|||.||+|||+|+...
T Consensus 118 ~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 118 TFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp EEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999763
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.76 E-value=8.3e-19 Score=152.37 Aligned_cols=126 Identities=10% Similarity=-0.054 Sum_probs=90.8
Q ss_pred cceeeCCCccCCCCceeEEEEEecCCeeEEEE---c--CC--CCChhHHHHHHHHHHhhcccccccCCCchhhhhccchh
Q psy14646 38 FPICSSSPIDLDETGVGCALTIPQLNETKRFA---L--NK--HSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHE 110 (366)
Q Consensus 38 ~~~~~~~~~~~~~~~~g~a~~~~~~~~~~~~~---l--~~--~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~ 110 (366)
..++|+ |++-..+..|+|+++...+....+. + +. .++++.||+.|+..||++
T Consensus 6 ~i~iyt-DGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~-------------------- 64 (147)
T 2kq2_A 6 EYDVYT-DGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKK-------------------- 64 (147)
T ss_dssp CCEEEC-CCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHH--------------------
T ss_pred eEEEEE-CCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHH--------------------
Confidence 345677 5554447788888886655443332 2 22 369999999999999993
Q ss_pred hhHHHHHHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhccC-CCchHHHHHHHHHhcCCCcEEEEEecccccc
Q psy14646 111 LKDKLLQQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNLY-HPNPLVKKIQEEYSNSQANIKFLWCPSHVSI 189 (366)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~~-~~~~i~~~I~~~l~~~~~~V~~~WVPgH~Gi 189 (366)
+.+.+. +|.|+|||+.+.+.+.+.+ .+++....+.++++.....|.|.|||||+|+
T Consensus 65 ----------------------a~~~~~-~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~ 121 (147)
T 2kq2_A 65 ----------------------ASQLGV-KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGN 121 (147)
T ss_dssp ----------------------HHHHTC-CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCC
T ss_pred ----------------------HHHCCC-eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCC
Confidence 222344 8999999998887776633 4444445555555443338999999999999
Q ss_pred ccchhhHHHHHHHhcccc
Q psy14646 190 SGNERAEECYSNYLASVE 207 (366)
Q Consensus 190 ~GNE~AD~lAk~A~~~~~ 207 (366)
+|||.||+|||+|+....
T Consensus 122 ~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 122 EFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred cchHHHHHHHHHHHhccc
Confidence 999999999999998763
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.75 E-value=2.9e-18 Score=150.03 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=87.5
Q ss_pred eeeCCCcc-CCC-CceeEEEEEecCCeeEEE--EcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHH
Q psy14646 40 ICSSSPID-LDE-TGVGCALTIPQLNETKRF--ALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKL 115 (366)
Q Consensus 40 ~~~~~~~~-~~~-~~~g~a~~~~~~~~~~~~--~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (366)
.+|+ |++ ..+ +..|+|+++...+....+ .+ ..+|++.||+.|+..||+++
T Consensus 6 ~iyt-DGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~------------------------ 59 (155)
T 1jl1_A 6 EIFT-AGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEAL------------------------ 59 (155)
T ss_dssp EEEE-EEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTC------------------------
T ss_pred EEEE-ccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHh------------------------
Confidence 4556 443 333 336777777655543322 23 36789999999999999943
Q ss_pred HHHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhcc---------CC------C-chHHHHHHHHHhcCCCcEE
Q psy14646 116 LQQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNL---------YH------P-NPLVKKIQEEYSNSQANIK 179 (366)
Q Consensus 116 ~~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~---------~~------~-~~i~~~I~~~l~~~~~~V~ 179 (366)
.+ ..+|.|+|||++++++|..| .. . .++.+.|.++++. ..|.
T Consensus 60 ------------------~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~--~~v~ 117 (155)
T 1jl1_A 60 ------------------KE--HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ--HQIK 117 (155)
T ss_dssp ------------------CS--CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT--CEEE
T ss_pred ------------------Cc--CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHcc--CceE
Confidence 22 37899999999999999972 11 1 2456666665543 5899
Q ss_pred EEEeccccccccchhhHHHHHHHhcccc
Q psy14646 180 FLWCPSHVSISGNERAEECYSNYLASVE 207 (366)
Q Consensus 180 ~~WVPgH~Gi~GNE~AD~lAk~A~~~~~ 207 (366)
|.|||||+|++|||.||+||++|+..+.
T Consensus 118 ~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 118 WEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp EEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999998753
No 5
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.75 E-value=4.9e-18 Score=148.22 Aligned_cols=119 Identities=21% Similarity=0.241 Sum_probs=85.6
Q ss_pred cceeeCCCccCCCCc-eeEEEEEecCCeeEEEEcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHH
Q psy14646 38 FPICSSSPIDLDETG-VGCALTIPQLNETKRFALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLL 116 (366)
Q Consensus 38 ~~~~~~~~~~~~~~~-~g~a~~~~~~~~~~~~~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
...+|+......+.| .|+|+++... ....+.+ ..+|+..||+.|+..||+
T Consensus 12 ~~~iytDGs~~~n~g~~g~G~v~~~~-~~~~~~~-~~~Tnn~aEl~A~i~AL~--------------------------- 62 (150)
T 3qio_A 12 AETFYVDGAANRETKLGKAGYVTNRG-RQKVVTL-TDTTNQKTELQAIYLALQ--------------------------- 62 (150)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEETTS-CEEEEEE-SSCCHHHHHHHHHHHHHH---------------------------
T ss_pred CEEEEEccCCCCCCCCeEEEEEEEcC-CEEEEeC-CCCCHHHHHHHHHHHHHH---------------------------
Confidence 345666333333333 4556665443 3444455 478999999999999999
Q ss_pred HHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhccC----------------CCchHHHHHHHHHhcCCCcEEE
Q psy14646 117 QQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNLY----------------HPNPLVKKIQEEYSNSQANIKF 180 (366)
Q Consensus 117 ~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~~----------------~~~~i~~~I~~~l~~~~~~V~~ 180 (366)
.+ ..+|.|+|||++++++|..+. ...++.+++.+++. ....|.|
T Consensus 63 ---------------~~----~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~-~~~~v~~ 122 (150)
T 3qio_A 63 ---------------DS----GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI-KKEKVYL 122 (150)
T ss_dssp ---------------HS----CSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHT-TCSEEEE
T ss_pred ---------------hC----CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHh-hcCceEE
Confidence 21 378999999999999999851 11134555554443 3578999
Q ss_pred EEeccccccccchhhHHHHHHHhcc
Q psy14646 181 LWCPSHVSISGNERAEECYSNYLAS 205 (366)
Q Consensus 181 ~WVPgH~Gi~GNE~AD~lAk~A~~~ 205 (366)
.|||||+|++|||.||+||++|+..
T Consensus 123 ~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 123 AWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp EECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred EEccCcCCChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.75 E-value=4.9e-18 Score=149.13 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=86.6
Q ss_pred eeeCCCcc-CCC-CceeEEEEEecCCeeEEE--EcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHH
Q psy14646 40 ICSSSPID-LDE-TGVGCALTIPQLNETKRF--ALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKL 115 (366)
Q Consensus 40 ~~~~~~~~-~~~-~~~g~a~~~~~~~~~~~~--~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (366)
.+|+ |++ ..+ +..|+|+++...+....+ .+ ..+|++.||+.|+..||+++
T Consensus 8 ~iyt-DGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~------------------------ 61 (158)
T 2e4l_A 8 HIFT-DGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEAL------------------------ 61 (158)
T ss_dssp EEEE-EEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTC------------------------
T ss_pred EEEE-cccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHh------------------------
Confidence 4556 443 333 345777777655433322 23 25789999999999999942
Q ss_pred HHHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhcc--------C-C------C-chHHHHHHHHHhcCCCcEE
Q psy14646 116 LQQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNL--------Y-H------P-NPLVKKIQEEYSNSQANIK 179 (366)
Q Consensus 116 ~~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~--------~-~------~-~~i~~~I~~~l~~~~~~V~ 179 (366)
.+ ..+|.|+|||++++++|..| . . . .++.+.|.++++. ..|.
T Consensus 62 ------------------~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~--~~v~ 119 (158)
T 2e4l_A 62 ------------------KE--PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL--HQID 119 (158)
T ss_dssp ------------------SS--CCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT--SEEE
T ss_pred ------------------cc--CCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHcc--CcEE
Confidence 22 37899999999999999882 1 1 1 1456666666653 5899
Q ss_pred EEEeccccccccchhhHHHHHHHhcc
Q psy14646 180 FLWCPSHVSISGNERAEECYSNYLAS 205 (366)
Q Consensus 180 ~~WVPgH~Gi~GNE~AD~lAk~A~~~ 205 (366)
|.|||||+|++|||.||+||++|+..
T Consensus 120 ~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 120 WRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp EEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred EEEccCCCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999987
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.72 E-value=2.5e-17 Score=146.06 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=84.1
Q ss_pred eeeCCCccC-C-CCceeEEEEEecCCeeEEE-EcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHH
Q psy14646 40 ICSSSPIDL-D-ETGVGCALTIPQLNETKRF-ALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLL 116 (366)
Q Consensus 40 ~~~~~~~~~-~-~~~~g~a~~~~~~~~~~~~-~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
.+|+ |++- . .+..|+|+++...+....+ .+...++++.||+.|+..||++
T Consensus 25 ~iyt-DGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~-------------------------- 77 (165)
T 3p1g_A 25 TWYT-DGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKM-------------------------- 77 (165)
T ss_dssp EEEE-EEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHH--------------------------
T ss_pred EEEE-EcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHH--------------------------
Confidence 4555 4443 2 2334556555444443322 4556889999999999999993
Q ss_pred HHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhccCCCc-----hHHHHHHHHHhcCCCcEEEEEeccccc---
Q psy14646 117 QQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNLYHPN-----PLVKKIQEEYSNSQANIKFLWCPSHVS--- 188 (366)
Q Consensus 117 ~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~~~~~-----~i~~~I~~~l~~~~~~V~~~WVPgH~G--- 188 (366)
+ ....+.|+|||++++++|-...... ++++++.+.+. .+..|.|.|||||+|
T Consensus 78 ----------------~---~~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~ 137 (165)
T 3p1g_A 78 ----------------A---EGKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNS 137 (165)
T ss_dssp ----------------T---BTSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCS
T ss_pred ----------------c---cCceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCc
Confidence 2 2578999999999999993211111 33444433322 457899999999999
Q ss_pred --cccchhhHHHHHHHhccc
Q psy14646 189 --ISGNERAEECYSNYLASV 206 (366)
Q Consensus 189 --i~GNE~AD~lAk~A~~~~ 206 (366)
++|||.||+|||+|+...
T Consensus 138 ~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 138 AEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcC
Confidence 999999999999999875
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.69 E-value=3.6e-17 Score=144.84 Aligned_cols=120 Identities=16% Similarity=0.066 Sum_probs=87.3
Q ss_pred eeeCCCcc-CCC-CceeEEEEEecCCeeEEEEcC-CCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHH
Q psy14646 40 ICSSSPID-LDE-TGVGCALTIPQLNETKRFALN-KHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLL 116 (366)
Q Consensus 40 ~~~~~~~~-~~~-~~~g~a~~~~~~~~~~~~~l~-~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
.+|+ |++ ..+ +..|+|+++...+....+.-+ ..+|++.||+.|+..||+++
T Consensus 10 ~iyt-DGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~------------------------- 63 (166)
T 1ril_A 10 ALFT-DGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKAL------------------------- 63 (166)
T ss_dssp CEEE-EEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSC-------------------------
T ss_pred EEEE-CccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHh-------------------------
Confidence 4566 443 333 345677777654433222211 26799999999999999943
Q ss_pred HHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhc----------cCC-------CchHHHHHHHHHhcCCCcEE
Q psy14646 117 QQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISN----------LYH-------PNPLVKKIQEEYSNSQANIK 179 (366)
Q Consensus 117 ~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~----------~~~-------~~~i~~~I~~~l~~~~~~V~ 179 (366)
.+ ...|.|+|||++++++|.. +.. ..++.+.|.++++. ..|.
T Consensus 64 -----------------~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~--~~v~ 122 (166)
T 1ril_A 64 -----------------KE--PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP--HRVR 122 (166)
T ss_dssp -----------------CS--CCEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT--SEEE
T ss_pred -----------------cc--CCeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc--CeEE
Confidence 22 3589999999999999998 221 12466677666653 5899
Q ss_pred EEEeccccccccchhhHHHHHHHhccc
Q psy14646 180 FLWCPSHVSISGNERAEECYSNYLASV 206 (366)
Q Consensus 180 ~~WVPgH~Gi~GNE~AD~lAk~A~~~~ 206 (366)
|.|||||+|++|||.||+|||+|+...
T Consensus 123 ~~wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 123 FHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp CCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred EEEeeCCCCchhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999875
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.64 E-value=5.9e-16 Score=137.27 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=82.6
Q ss_pred eeeCCCccCCCCc------eeEEEEEecCCe----eEEEEcC-CCCChhHHHHHHHHHHhhcccccccCCCchhhhhccc
Q psy14646 40 ICSSSPIDLDETG------VGCALTIPQLNE----TKRFALN-KHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNK 108 (366)
Q Consensus 40 ~~~~~~~~~~~~~------~g~a~~~~~~~~----~~~~~l~-~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~ 108 (366)
++|+...+.++.| .|+|+++...+. ...+.+. ...+...||+.|+..||+.
T Consensus 9 viYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~------------------ 70 (165)
T 2lsn_A 9 VFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKK------------------ 70 (165)
T ss_dssp EEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHH------------------
T ss_pred EEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHH------------------
Confidence 5677333344433 688887654332 2233332 2566777888888887771
Q ss_pred hhhhHHHHHHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhcc---------CC-------CchHHHHHHHHHh
Q psy14646 109 HELKDKLLQQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNL---------YH-------PNPLVKKIQEEYS 172 (366)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~---------~~-------~~~i~~~I~~~l~ 172 (366)
+.. ...+|.|+|||++++++|..| .. ..++.+++.+++.
T Consensus 71 ------------------------al~-~~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~ 125 (165)
T 2lsn_A 71 ------------------------ALK-IPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLS 125 (165)
T ss_dssp ------------------------HHH-SSSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHH
T ss_pred ------------------------Hhc-CCCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHh
Confidence 122 245799999999999999763 11 1246666666655
Q ss_pred cCCCcEEEEEecccccc------ccchhhHHHHHHHhcc
Q psy14646 173 NSQANIKFLWCPSHVSI------SGNERAEECYSNYLAS 205 (366)
Q Consensus 173 ~~~~~V~~~WVPgH~Gi------~GNE~AD~lAk~A~~~ 205 (366)
.. ..|.|.|||||+|+ +|||.||+||++|+..
T Consensus 126 ~~-~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 126 MK-PDITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp HC-TTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 43 57999999999994 6899999999999865
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.57 E-value=9.3e-15 Score=151.64 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=86.7
Q ss_pred ceeeCCCcc-CCCCc-eeEEEEEecCCeeEEEEcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHH
Q psy14646 39 PICSSSPID-LDETG-VGCALTIPQLNETKRFALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLL 116 (366)
Q Consensus 39 ~~~~~~~~~-~~~~~-~g~a~~~~~~~~~~~~~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
..+|+ |++ ..++| .|+|+++...+ .....++ .+|++.||+.|+..||+
T Consensus 437 ~~iyt-DGs~~~n~g~~g~G~v~~~~~-~~~~~~~-~~TNn~aEl~A~i~aL~--------------------------- 486 (555)
T 1mu2_A 437 ETFYT-DGSCNRQSKEGKAGYVTDRGK-DKVKKLE-QTTNQQAELEAFAMALT--------------------------- 486 (555)
T ss_dssp EEEEE-EEEECTTTCCEEEEEEETTSC-EEEEEES-SCCHHHHHHHHHHHHHH---------------------------
T ss_pred eEEEE-cccccCCCCCceEEEEEEeCC-EeeccCC-CCCHHHHHHHHHHHHHH---------------------------
Confidence 34555 443 33333 46666665544 3334443 78999999999999999
Q ss_pred HHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhccCC--CchHHHHHHHHHhcCCCcEEEEEeccccccccchh
Q psy14646 117 QQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNLYH--PNPLVKKIQEEYSNSQANIKFLWCPSHVSISGNER 194 (366)
Q Consensus 117 ~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~~~--~~~i~~~I~~~l~~~~~~V~~~WVPgH~Gi~GNE~ 194 (366)
. ....+.|+|||++|+++|.+|.. ..++.+++.+++.. +..|.|.|||||+|++|||.
T Consensus 487 ---------------~----~~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~~-~~~v~~~wV~~H~g~~~Ne~ 546 (555)
T 1mu2_A 487 ---------------D----SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIK-KEAIYVAWVPAHKGIGGNQE 546 (555)
T ss_dssp ---------------T----SCSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHH-CSEEEEEECCSSSCCTTHHH
T ss_pred ---------------c----CCCeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhcc-CCcEEEEEEECCCCChhHHH
Confidence 2 35789999999999999998753 34677777666544 47899999999999999999
Q ss_pred hHHHHHHHh
Q psy14646 195 AEECYSNYL 203 (366)
Q Consensus 195 AD~lAk~A~ 203 (366)
||+||++|+
T Consensus 547 AD~LA~~a~ 555 (555)
T 1mu2_A 547 VDHLVSQGI 555 (555)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhC
Confidence 999999874
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.57 E-value=6.1e-15 Score=153.06 Aligned_cols=114 Identities=22% Similarity=0.230 Sum_probs=83.6
Q ss_pred ceeeCCCcc-CCCCc-eeEEEEEecCCeeEEEEcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHH
Q psy14646 39 PICSSSPID-LDETG-VGCALTIPQLNETKRFALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLL 116 (366)
Q Consensus 39 ~~~~~~~~~-~~~~~-~g~a~~~~~~~~~~~~~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
..+|+ |++ .+++| .|+|+++. .+....+.+ ..+|++.||+.|+..||++
T Consensus 440 ~~iyt-DGs~~~n~g~~g~g~v~~-~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~-------------------------- 490 (557)
T 2zd1_A 440 ETFYV-DGAANRETKLGKAGYVTN-KGRQKVVPL-TNTTNQKTELQAIYLALQD-------------------------- 490 (557)
T ss_dssp CEEEE-EEEECTTTCCEEEEEEET-TSCEEEEEE-CSCCHHHHHHHHHHHHHHH--------------------------
T ss_pred EEEEE-ccCCCCCCCceEEEEEEE-CCcEEEecC-CCCCHHHHHHHHHHHHHHh--------------------------
Confidence 45566 443 34444 45666654 343444444 3789999999999999992
Q ss_pred HHHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhccCCC--chHHHHHHHHHhcCCCcEEEEEeccccccccchh
Q psy14646 117 QQIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNLYHP--NPLVKKIQEEYSNSQANIKFLWCPSHVSISGNER 194 (366)
Q Consensus 117 ~~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~~~~--~~i~~~I~~~l~~~~~~V~~~WVPgH~Gi~GNE~ 194 (366)
+ ..++.|+|||++|+++|.++... .++.+++.+.+.. ...|.|.|||||+|++|||.
T Consensus 491 ----------------~----~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~-~~~v~~~wV~~H~g~~~Ne~ 549 (557)
T 2zd1_A 491 ----------------S----GLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIK-KEKVYLAWVPAHKGIGGNEQ 549 (557)
T ss_dssp ----------------S----CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHH-CSEEEEEECCSSSCCTTCCG
T ss_pred ----------------C----CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhc-CCCEEEEEcCCCCCChhHHH
Confidence 2 47899999999999999997654 3677777655544 35899999999999999999
Q ss_pred hHHHHHHH
Q psy14646 195 AEECYSNY 202 (366)
Q Consensus 195 AD~lAk~A 202 (366)
||+||++|
T Consensus 550 AD~LA~~a 557 (557)
T 2zd1_A 550 VDKLVSAG 557 (557)
T ss_dssp GGGCC---
T ss_pred HHHHHhcC
Confidence 99999986
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.55 E-value=2.7e-14 Score=123.22 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=81.2
Q ss_pred CceeE-EEEEecCCee-EEE--EcC---CCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHHHHHHHHh
Q psy14646 51 TGVGC-ALTIPQLNET-KRF--ALN---KHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLLQQIAYVD 123 (366)
Q Consensus 51 ~~~g~-a~~~~~~~~~-~~~--~l~---~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
++.|+ |+++.+.+.. ..+ .++ ..++++.||+.|+..||++
T Consensus 16 g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~--------------------------------- 62 (149)
T 2ehg_A 16 GGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMET--------------------------------- 62 (149)
T ss_dssp SSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHH---------------------------------
T ss_pred ChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHH---------------------------------
Confidence 55665 7666654433 223 233 3789999999999999993
Q ss_pred HhHHHHHHhhhhcCCceEEEEeccHHHHHHHhccCC-Cc----hHHHHHHHHHhcCCCcEEEEEeccccccccchhhHHH
Q psy14646 124 INSLQSLNHVKELDTRKILIISDSLSSFQAISNLYH-PN----PLVKKIQEEYSNSQANIKFLWCPSHVSISGNERAEEC 198 (366)
Q Consensus 124 ~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~~~-~~----~i~~~I~~~l~~~~~~V~~~WVPgH~Gi~GNE~AD~l 198 (366)
+.+.+..++.|+|||+++++.+.++.. ++ ++.+.+.++++.. .|.|.|||+| +|+.||+|
T Consensus 63 ---------a~~~g~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~--~v~~~~V~~~----~N~~AD~L 127 (149)
T 2ehg_A 63 ---------MLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL--NATLIWVPRE----ENKEADRL 127 (149)
T ss_dssp ---------HHHHTCCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH--TCEEEECCGG----GCHHHHHH
T ss_pred ---------HHHcCCCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC--CEEEEEcCCc----ccHHHHHH
Confidence 233456799999999999999999643 22 4566666666655 4999999996 99999999
Q ss_pred HHHHhccc
Q psy14646 199 YSNYLASV 206 (366)
Q Consensus 199 Ak~A~~~~ 206 (366)
|++|+...
T Consensus 128 A~~a~~~~ 135 (149)
T 2ehg_A 128 SRVAYELV 135 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999875
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.55 E-value=2.3e-14 Score=121.08 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=77.1
Q ss_pred CceeEEEEEecCC-ee---EEEEcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHHHHHHHHhHhH
Q psy14646 51 TGVGCALTIPQLN-ET---KRFALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLLQQIAYVDINS 126 (366)
Q Consensus 51 ~~~g~a~~~~~~~-~~---~~~~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+..|+|+++.+.+ .. ....++ .+|++.||+.|+..||+++
T Consensus 17 g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a----------------------------------- 60 (140)
T 3u3g_D 17 GPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDL----------------------------------- 60 (140)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHH-----------------------------------
Confidence 3567777776532 21 222333 5799999999999999942
Q ss_pred HHHHHhhhhcCCc----eEEEEeccHHHHHHHhccCC-Cc-h---HHHHHHHH-HhcCCCcEEEEEeccccccccchhhH
Q psy14646 127 LQSLNHVKELDTR----KILIISDSLSSFQAISNLYH-PN-P---LVKKIQEE-YSNSQANIKFLWCPSHVSISGNERAE 196 (366)
Q Consensus 127 l~al~~~~~~~~~----~i~I~sDS~sal~ai~~~~~-~~-~---i~~~I~~~-l~~~~~~V~~~WVPgH~Gi~GNE~AD 196 (366)
.+.+.. ++.|+|||+++++.+.++.. ++ . +...|.++ ++. ...|.|.|||+ ++||.||
T Consensus 61 -------~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~-~~~v~~~~V~~----~~N~~AD 128 (140)
T 3u3g_D 61 -------QMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMER-VPNLVFVHIPR----EKNARAD 128 (140)
T ss_dssp -------GGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHH-CTTCEEEECCG----GGGHHHH
T ss_pred -------HHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcC-CCcEEEEEcCc----hhhHHHH
Confidence 222334 99999999999999998542 33 2 34555555 443 25899999995 5999999
Q ss_pred HHHHHHhcc
Q psy14646 197 ECYSNYLAS 205 (366)
Q Consensus 197 ~lAk~A~~~ 205 (366)
+|||+|+..
T Consensus 129 ~LA~~a~~~ 137 (140)
T 3u3g_D 129 ELVNEAIDK 137 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 14
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.55 E-value=4.3e-14 Score=120.02 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=77.8
Q ss_pred CceeEEEEEecCC--e---eEEEEcCCCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHHHHHHHHhHh
Q psy14646 51 TGVGCALTIPQLN--E---TKRFALNKHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLLQQIAYVDIN 125 (366)
Q Consensus 51 ~~~g~a~~~~~~~--~---~~~~~l~~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+..|+|+++.+.+ . .....++ .+|++.||+.|+..||++
T Consensus 17 g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~----------------------------------- 60 (141)
T 3hst_B 17 GPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDD----------------------------------- 60 (141)
T ss_dssp EEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHH-----------------------------------
Confidence 3456676665532 2 1222333 789999999999999993
Q ss_pred HHHHHHhhhhcCCceEEEEeccHHHHHHHhcc-CCCch-HH---HHHHHHHhcCCCcEEEEEeccccccccchhhHHHHH
Q psy14646 126 SLQSLNHVKELDTRKILIISDSLSSFQAISNL-YHPNP-LV---KKIQEEYSNSQANIKFLWCPSHVSISGNERAEECYS 200 (366)
Q Consensus 126 ~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~-~~~~~-i~---~~I~~~l~~~~~~V~~~WVPgH~Gi~GNE~AD~lAk 200 (366)
+.+.+..++.|+|||+++++.+... ...++ +. ..|.++++ ....|.|.|||+ ++||.||+|||
T Consensus 61 -------a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~-~~~~v~~~~V~~----~~N~~AD~LA~ 128 (141)
T 3hst_B 61 -------AVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALAS-QFRRINYEWVPR----ARNTYADRLAN 128 (141)
T ss_dssp -------HHHHTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHT-TSSEEEEEECCG----GGCHHHHHHHH
T ss_pred -------HHHCCCceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEcCC----cccHHHHHHHH
Confidence 2334678999999999999999984 34443 33 33333333 347899999996 59999999999
Q ss_pred HHhccc
Q psy14646 201 NYLASV 206 (366)
Q Consensus 201 ~A~~~~ 206 (366)
+|+...
T Consensus 129 ~a~~~~ 134 (141)
T 3hst_B 129 DAMDAA 134 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.57 E-value=4.4e-08 Score=84.50 Aligned_cols=115 Identities=13% Similarity=-0.034 Sum_probs=73.4
Q ss_pred eeeCCCccCCC-CceeEEEEEecCCeeEEEEcCC-CCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHHH
Q psy14646 40 ICSSSPIDLDE-TGVGCALTIPQLNETKRFALNK-HSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLLQ 117 (366)
Q Consensus 40 ~~~~~~~~~~~-~~~g~a~~~~~~~~~~~~~l~~-~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (366)
.+|+..++..+ +..|+|+++...+.....+.+. .+|+..||+.|+..||++
T Consensus 13 ~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~--------------------------- 65 (142)
T 1zbf_A 13 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRY--------------------------- 65 (142)
T ss_dssp SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHH---------------------------
T ss_pred EEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHH---------------------------
Confidence 34552333333 3457777776444433332221 679999999999999993
Q ss_pred HHHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhccCCC---------chHHHHHHHHHh-cCCCcEEEEEecccc
Q psy14646 118 QIAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNLYHP---------NPLVKKIQEEYS-NSQANIKFLWCPSHV 187 (366)
Q Consensus 118 ~~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~~~~---------~~i~~~I~~~l~-~~~~~V~~~WVPgH~ 187 (366)
+.+.+. ++.|+|||+++++.+.+.... .++.+.+..+.. .....+....|.-|+
T Consensus 66 ---------------~~~~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~ 129 (142)
T 1zbf_A 66 ---------------LKERNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQT 129 (142)
T ss_dssp ---------------HHHTTC-CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCH
T ss_pred ---------------HHhCCC-eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEecc
Confidence 233334 899999999999999986421 135555544322 112345555566699
Q ss_pred ccccchhhHH
Q psy14646 188 SISGNERAEE 197 (366)
Q Consensus 188 Gi~GNE~AD~ 197 (366)
+..||..||.
T Consensus 130 ~~~ge~pad~ 139 (142)
T 1zbf_A 130 DKWGEIKADY 139 (142)
T ss_dssp HHHCSCTTCC
T ss_pred CccCcCcccc
Confidence 9999999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=97.67 E-value=4.5e-05 Score=64.96 Aligned_cols=74 Identities=16% Similarity=0.048 Sum_probs=47.5
Q ss_pred eeCCCccCCCCc-eeEEEEEecCCeeEEEEcC-CCCChhHHHHHHHHHHhhcccccccCCCchhhhhccchhhhHHHHHH
Q psy14646 41 CSSSPIDLDETG-VGCALTIPQLNETKRFALN-KHSSIFHAELFSIPLHLSLTNCTIDRDSSIDIFFNNKHELKDKLLQQ 118 (366)
Q Consensus 41 ~~~~~~~~~~~~-~g~a~~~~~~~~~~~~~l~-~~~~~~~ae~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
.|+..++.++.| .|.|.++...+......-+ ..+|+..||++|+..||++
T Consensus 8 iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~---------------------------- 59 (134)
T 4htu_A 8 LSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRY---------------------------- 59 (134)
T ss_dssp EEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHH----------------------------
T ss_pred EEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHH----------------------------
Confidence 344334444444 4453445554433322211 2789999999999999993
Q ss_pred HHHHhHhHHHHHHhhhhcCCceEEEEeccHHHHHHHhcc
Q psy14646 119 IAYVDINSLQSLNHVKELDTRKILIISDSLSSFQAISNL 157 (366)
Q Consensus 119 ~~~~~~~~l~al~~~~~~~~~~i~I~sDS~sal~ai~~~ 157 (366)
+.+.+. .+.|+|||++|++.|.++
T Consensus 60 --------------l~~~~~-~v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 60 --------------LKERNS-RKPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp --------------HHHTTC-CCCEEESCHHHHHHHHHT
T ss_pred --------------HHhCCC-CEEEEcchHHHHHHHHcC
Confidence 233232 389999999999999874
No 17
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=38.30 E-value=52 Score=26.94 Aligned_cols=60 Identities=13% Similarity=0.018 Sum_probs=36.2
Q ss_pred hhHHHHHHHhhhcCCcceeeCCCccCCCCceeEEEEEecCCeeEEEEcCCCCChhHHHHHHHHHHhh
Q psy14646 23 HYWDLFEAQITDQNEFPICSSSPIDLDETGVGCALTIPQLNETKRFALNKHSSIFHAELFSIPLHLS 89 (366)
Q Consensus 23 ~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~g~a~~~~~~~~~~~~~l~~~~~~~~ae~~ai~~~l~ 89 (366)
.+..+.+..+.-.+.. |. + ++-.||+|++..++......-+..+..-.+||..||..|..
T Consensus 6 ~~~~L~~~A~~a~~~a---y~-~---s~f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~ 65 (130)
T 2z3g_A 6 EESTLIERATATINSI---PI-S---EDYSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAA 65 (130)
T ss_dssp HHHHHHHHHHHHHHHS---CC-C---SSSCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---CC-C---CCCCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHH
Confidence 3444555555544332 22 1 45789999987555443332232344567899999999987
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=35.67 E-value=71 Score=26.77 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=36.2
Q ss_pred hhHHHHHHHhhhcCCcceeeCCCccCCCCceeEEEEEecCCeeEEEEcCC--CCChhHHHHHHHHHHhh
Q psy14646 23 HYWDLFEAQITDQNEFPICSSSPIDLDETGVGCALTIPQLNETKRFALNK--HSSIFHAELFSIPLHLS 89 (366)
Q Consensus 23 ~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~g~a~~~~~~~~~~~~~l~~--~~~~~~ae~~ai~~~l~ 89 (366)
.|..+.+..+.-.... |. +++ +..||+|++..++......-+.. +..--+||..||..|..
T Consensus 14 ~~~~L~~~A~~a~~~a---ya-pys--~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~ 76 (146)
T 2fr5_A 14 HVQRLLLSSREAKKSA---YC-PYS--RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAIS 76 (146)
T ss_dssp HHHHHHHHHHHHHTTC---BC-TTT--CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CC-CcC--CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHh
Confidence 3455666665554332 22 433 66899999765554433222221 22346899999999987
No 19
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=33.09 E-value=90 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.061 Sum_probs=26.9
Q ss_pred CCCceeEEEEEecCCeeEEEEcC--CCCChhHHHHHHHHHHhh
Q psy14646 49 DETGVGCALTIPQLNETKRFALN--KHSSIFHAELFSIPLHLS 89 (366)
Q Consensus 49 ~~~~~g~a~~~~~~~~~~~~~l~--~~~~~~~ae~~ai~~~l~ 89 (366)
++-.||++++..++......-+. .+....+||..||..|..
T Consensus 22 s~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~ 64 (136)
T 1uwz_A 22 SKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVS 64 (136)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHH
Confidence 35589999977555444322222 133457899999999987
No 20
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=31.89 E-value=92 Score=25.93 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=36.7
Q ss_pred hHHHHHHHhhhcCCcceeeCCCccCCCCceeEEEEEecCCeeEEEEcCC--CCChhHHHHHHHHHHhh
Q psy14646 24 YWDLFEAQITDQNEFPICSSSPIDLDETGVGCALTIPQLNETKRFALNK--HSSIFHAELFSIPLHLS 89 (366)
Q Consensus 24 ~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~g~a~~~~~~~~~~~~~l~~--~~~~~~ae~~ai~~~l~ 89 (366)
|..+++..+.-... .|. |+| +-.||+|++..++......-+.. +..--.||..||..|..
T Consensus 12 ~~~L~~~A~~a~~~---Aya-PYS--~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs 73 (141)
T 2d30_A 12 SKQLIQEAIEARKQ---AYV-PYS--KFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVS 73 (141)
T ss_dssp HHHHHHHHHHHHTT---CBC-TTT--CCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---cCC-CcC--CCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHH
Confidence 66666665554433 222 444 44899999875554443333321 33456899999999987
No 21
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=23.81 E-value=1.5e+02 Score=24.50 Aligned_cols=60 Identities=18% Similarity=0.084 Sum_probs=36.3
Q ss_pred hHHHHHHHhhhcCCcceeeCCCccCCCCceeEEEEEecCCeeEEEEcCC--CCChhHHHHHHHHHHhh
Q psy14646 24 YWDLFEAQITDQNEFPICSSSPIDLDETGVGCALTIPQLNETKRFALNK--HSSIFHAELFSIPLHLS 89 (366)
Q Consensus 24 ~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~g~a~~~~~~~~~~~~~l~~--~~~~~~ae~~ai~~~l~ 89 (366)
|..+.+..+.-.+. .|. |+| +-.||+|+...++......-+.. +..-..||..||..|..
T Consensus 11 ~~~L~~~A~~a~~~---aya-PYS--~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~ 72 (142)
T 1r5t_A 11 LEALKRAALKACEL---SYS-PYS--HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLM 72 (142)
T ss_dssp HHHHHHHHHHHGGG---CBC-TTT--CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---cCC-CcC--CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHH
Confidence 45566665554433 232 555 66899999764554333333321 33457899999999987
No 22
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=21.29 E-value=1.6e+02 Score=24.68 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=27.1
Q ss_pred CCCceeEEEEEecCCeeEEEEcCC----CCChhHHHHHHHHHHhh
Q psy14646 49 DETGVGCALTIPQLNETKRFALNK----HSSIFHAELFSIPLHLS 89 (366)
Q Consensus 49 ~~~~~g~a~~~~~~~~~~~~~l~~----~~~~~~ae~~ai~~~l~ 89 (366)
++..|||+++. ++.......+. ....-|||..||..|.+
T Consensus 25 ~~~pVGAviv~--~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~ 67 (159)
T 2b3j_A 25 GEVPIGAIITK--DDEVIARAHNLRETLQQPTAHAEHIAIERAAK 67 (159)
T ss_dssp TSCCCEEEEEE--TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEE--CCEEEEEEECCCCCCCCCccCHHHHHHHHHHH
Confidence 57789999975 45444334332 24567999999998876
No 23
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=20.61 E-value=52 Score=27.38 Aligned_cols=59 Identities=12% Similarity=-0.077 Sum_probs=34.5
Q ss_pred hhHHHHHHHhhhcCCcceeeCCCccCCCCceeEEEEEecCCeeEEEEcC--CCCChhHHHHHHHHHHhh
Q psy14646 23 HYWDLFEAQITDQNEFPICSSSPIDLDETGVGCALTIPQLNETKRFALN--KHSSIFHAELFSIPLHLS 89 (366)
Q Consensus 23 ~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~g~a~~~~~~~~~~~~~l~--~~~~~~~ae~~ai~~~l~ 89 (366)
.+..+++..+.-.+.. |. |++ .||+|++..++......-+. .+....+||..||..|..
T Consensus 3 ~~~~L~~~A~~a~~~a---ya-PyS----~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~ 63 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQR---YP-NDW----GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHK 63 (142)
T ss_dssp HHHHHHHHHHHHHHHH---CS-SSC----EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CC-CCC----CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHH
Confidence 4445555555443321 33 555 99999976555433222221 133467899999999987
No 24
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=20.33 E-value=1.1e+02 Score=26.27 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCCceeEEEEEecCCeeEEEEcCC----CCChhHHHHHHHHHHhh
Q psy14646 49 DETGVGCALTIPQLNETKRFALNK----HSSIFHAELFSIPLHLS 89 (366)
Q Consensus 49 ~~~~~g~a~~~~~~~~~~~~~l~~----~~~~~~ae~~ai~~~l~ 89 (366)
++..|||.++. ++.......+. ....-|||..||..|.+
T Consensus 34 g~~pVGAVIV~--~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~ 76 (179)
T 2nx8_A 34 AEIPIGCVIVK--DGEIIGRGHNAREESNQAIMHAEMMAINEANA 76 (179)
T ss_dssp TSCCCEEEEEE--TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEE--CCEEEEEEECCCCCcCCCccCHHHHHHHHHHH
Confidence 46789999874 45444334332 23367999999999876
Done!