RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14646
         (366 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 30.6 bits (68), Expect = 0.11
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 143 IISDSLSSFQAISNLYHPNPLVKKIQEEYSNSQA-NIKFLWCPSHVSISGNERAEE 197
           II DS      +++    +      Q      +   I   W P+H  I GN+  + 
Sbjct: 65  IIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDH 120


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 26.5 bits (57), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 177 NIKFLWCPSHVSISGNERAEE 197
            IK+ W   H     NERA+E
Sbjct: 113 QIKWEWVKGHAGHPENERADE 133


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 26.5 bits (57), Expect = 3.6
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 173 NSQANIKFLWCPSHVSISGNERAEE 197
            +   ++F +   H     NER + 
Sbjct: 111 MAPHRVRFHFVKGHTGHPENERVDR 135


>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 323

 Score = 26.6 bits (58), Expect = 5.4
 Identities = 10/109 (9%), Positives = 25/109 (22%), Gaps = 2/109 (1%)

Query: 211 RSDPRFFWKYERSMRKDQSLPKNLHYGSDEATSVKWNTVWTSINPNENKLRRI--KNSIT 268
           +  P  F+   + +   Q  P   HY               + N +  +      +  + 
Sbjct: 92  KKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLV 151

Query: 269 PWKTSSQKARLDEVCLMRLRIGHTKITHSHLFKREERPECDTCHEPVTV 317
               +   +                          +  +C +  +P  V
Sbjct: 152 EAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIV 200


>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase
           (beta-N-acetylhexosaminidase) {Serratia marcescens
           [TaxId: 615]}
          Length = 443

 Score = 26.5 bits (57), Expect = 6.9
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 129 SLNHVKELDT----RKILIISDSLSSFQAISNLYHPNPLVKKIQEEYSNSQANIKFLWCP 184
           S     ++      R+I +I +      A + +       KK+       +AN   L  P
Sbjct: 88  SRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDP 147

Query: 185 SHVSISGNERAEECYSNYLASVETAIRSDPRFFWKYERSMRKDQSLPKNLHYGSDEATSV 244
           +  S + + +     S     ++++ R   +   +  +  ++     K  H+G DEA ++
Sbjct: 148 TDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGDEAKNI 207

Query: 245 KWNTVWTSINPNENKLRRIK--NSITPWKTS 273
           +    +T     E     I   N   PW  S
Sbjct: 208 RLGAGYTDKAKPEPGKGIIDQGNEDKPWAKS 238


>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
           {Campylobacter jejuni [TaxId: 197]}
          Length = 374

 Score = 26.1 bits (56), Expect = 8.4
 Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 48  LDETGVGCALTIPQLNETKRFA-----LNKHSSIFHAELFSIPLHLSLTNCTIDR 97
           L    +        ++  + F      LN +S +F  +   +P   +++   +  
Sbjct: 310 LKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYE 364


>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 24.3 bits (53), Expect = 9.7
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 320 LLLHCNKLRFRPPSFLGNSLSNILSDNPDSISTLMRFLKRNN 361
           + L   +   +  S     L+  LS N  S  T M  LK N 
Sbjct: 16  MTLESLE-EIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNM 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,357,011
Number of extensions: 61880
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 16
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)