Query psy14648
Match_columns 154
No_of_seqs 107 out of 1069
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 17:03:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00840 b_cpa1 sodium/hydrog 99.9 8.8E-27 1.9E-31 207.1 12.6 137 3-139 292-429 (559)
2 KOG1966|consensus 99.9 9.4E-29 2E-33 217.4 -2.0 138 2-139 320-461 (670)
3 KOG1965|consensus 99.9 2.6E-24 5.7E-29 189.2 5.3 131 4-134 323-462 (575)
4 TIGR00831 a_cpa1 Na+/H+ antipo 99.8 4.6E-20 9.9E-25 163.1 13.1 128 3-132 264-414 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 99.8 5.5E-20 1.2E-24 159.3 12.4 137 2-138 279-418 (429)
6 COG3263 NhaP-type Na+/H+ and K 99.7 3.8E-17 8.2E-22 140.7 7.6 137 6-154 273-412 (574)
7 PRK05326 potassium/proton anti 99.6 2.9E-15 6.2E-20 133.3 11.0 124 4-134 273-399 (562)
8 TIGR00844 c_cpa1 na(+)/h(+) an 99.1 2.8E-10 6E-15 104.8 10.4 123 2-128 292-442 (810)
9 PF00999 Na_H_Exchanger: Sodiu 98.5 5.6E-08 1.2E-12 81.8 1.4 113 6-124 264-380 (380)
10 KOG4505|consensus 96.6 0.0023 4.9E-08 54.8 4.1 122 2-127 292-438 (467)
11 PRK03659 glutathione-regulated 95.0 0.48 1E-05 43.1 11.9 112 9-126 269-385 (601)
12 COG0475 KefB Kef-type K+ trans 92.5 3.5 7.5E-05 35.7 12.2 117 9-132 277-394 (397)
13 PLN03159 cation/H(+) antiporte 91.1 3.6 7.7E-05 39.1 11.6 73 10-88 327-402 (832)
14 PRK10669 putative cation:proto 90.3 2.2 4.8E-05 38.2 9.1 99 9-113 280-379 (558)
15 PRK03562 glutathione-regulated 87.6 6.7 0.00015 35.9 10.4 72 10-87 273-345 (621)
16 PRK14855 nhaA pH-dependent sod 41.3 2.3E+02 0.005 25.2 8.7 91 38-132 325-420 (423)
17 COG2855 Predicted membrane pro 39.7 1.3E+02 0.0028 25.9 6.7 66 62-131 117-184 (334)
18 COG4791 EscT Type III secretor 34.0 88 0.0019 25.9 4.7 41 35-88 9-50 (259)
19 PF11836 DUF3356: Protein of u 32.9 37 0.0008 23.8 2.1 26 55-80 38-63 (101)
20 PF06695 Sm_multidrug_ex: Puta 32.8 1.2E+02 0.0026 21.8 4.8 14 77-90 2-15 (121)
21 PF15050 SCIMP: SCIMP protein 30.7 74 0.0016 23.5 3.3 41 102-143 12-53 (133)
22 COG1963 Uncharacterized protei 23.0 3.1E+02 0.0067 20.9 5.6 66 36-108 15-85 (153)
23 KOG1650|consensus 22.8 6.7E+02 0.015 23.9 9.4 62 62-127 360-422 (769)
24 COG4664 FcbT3 TRAP-type mannit 22.7 88 0.0019 27.4 3.0 52 71-130 94-145 (447)
25 PF07907 YibE_F: YibE/F-like p 22.0 86 0.0019 25.5 2.7 23 3-25 175-197 (244)
26 PF14143 YrhC: YrhC-like prote 21.7 2.5E+02 0.0055 18.6 5.4 24 3-26 11-34 (72)
No 1
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.94 E-value=8.8e-27 Score=207.15 Aligned_cols=137 Identities=26% Similarity=0.492 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcchhHHH
Q psy14648 3 KYLARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAIS 82 (154)
Q Consensus 3 k~~la~l~e~~IFillGl~l~~~~~~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~GlRGaVs 82 (154)
.+.+++++|+++|+++|++++...+.|++.++++++++|+++|+++|++++++.|++++.+++++||++++|+|+||+||
T Consensus 292 ~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~GlRGaVa 371 (559)
T TIGR00840 292 MKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVA 371 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeeeccccHHH
Confidence 46789999999999999999777677888888888999999999999999999999887889999999999999999999
Q ss_pred HHHHhhcccC-chhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCccccccccc
Q psy14648 83 YALSLHLEFS-DETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRRRRG 139 (154)
Q Consensus 83 lALal~l~~~-~~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~~~~~~~~ 139 (154)
+|+|+.+|.+ .|+++.++++|+++|++|+++||+|++|++++|+++++++.++++++
T Consensus 372 ~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l~~~~~~~~~~~e 429 (559)
T TIGR00840 372 FALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTKINE 429 (559)
T ss_pred HHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhCCCCCccchhhHHH
Confidence 9999998865 48999999999999999999999999999999999988876555443
No 2
>KOG1966|consensus
Probab=99.94 E-value=9.4e-29 Score=217.43 Aligned_cols=138 Identities=28% Similarity=0.509 Sum_probs=129.5
Q ss_pred hHHH---HHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcch
Q psy14648 2 VKYL---ARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLR 78 (154)
Q Consensus 2 ~k~~---la~l~e~~IFillGl~l~~~~~~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~GlR 78 (154)
|||+ ++..+|++||+++|++..+..|.||+.|+..+++.|.+.|++.++.+++++|++|..+++..+|++|+|||+|
T Consensus 320 vky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyGGLR 399 (670)
T KOG1966|consen 320 VKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYGGLR 399 (670)
T ss_pred HHHHHHHHHhccchhhheeehhhhcCCcceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecCCcc
Confidence 4554 6899999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred hHHHHHHHhhcccC-chhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCccccccccc
Q psy14648 79 GAISYALSLHLEFS-DETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRRRRG 139 (154)
Q Consensus 79 GaVslALal~l~~~-~~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~~~~~~~~ 139 (154)
|||+++|+..+|.+ .|.++.++++|.+|+.||+++||.|++|+++||++++++.+++++++
T Consensus 400 GAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVflQGiTIkplvk~L~Vk~~~~~~~~m~e 461 (670)
T KOG1966|consen 400 GAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFLQGITIKPLVKFLKVKRKNKRDPTMNE 461 (670)
T ss_pred hhhheeEEEEeccccCCcccceEeeeeEEEeeeeeecccchHHHHHHHccccccccCchhhH
Confidence 99999999999955 49999999999999999999999999999999999999988776543
No 3
>KOG1965|consensus
Probab=99.90 E-value=2.6e-24 Score=189.19 Aligned_cols=131 Identities=40% Similarity=0.671 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcccc-cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCchhhhhhhhhc-
Q psy14648 4 YLARTYSKTLVFLITGLAIFSFR-HRVE-PALVIWSLILCLVGRACNIFPLAILVNRFREHQ----ITRRMMFIMWFSG- 76 (154)
Q Consensus 4 ~~la~l~e~~IFillGl~l~~~~-~~~~-~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~----i~~~~~~v~~~~G- 76 (154)
++++|++|++||+|+|+.++..+ +.|. ..++.++.++++++|++.|||++.+.|..|+++ ++.++|.++||+|
T Consensus 323 ~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~ 402 (575)
T KOG1965|consen 323 RTLSFLAETFIFIYLGLSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGG 402 (575)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhh
Confidence 56899999999999999998876 5677 588999999999999999999999999999888 9999999999999
Q ss_pred chhHHHHHHHhhcccCch--hhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCcccc
Q psy14648 77 LRGAISYALSLHLEFSDE--TRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIG 134 (154)
Q Consensus 77 lRGaVslALal~l~~~~~--~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~~~ 134 (154)
+|||+++|||+....+.+ .++.+.++|..+|++|+++.|.++.|+++.|+++.+.+.+
T Consensus 403 lRGAvs~ALa~~~~~~~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~ 462 (575)
T KOG1965|consen 403 LRGAVSFALALGDFTDSPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAAD 462 (575)
T ss_pred hhHHHHHHHHhhhccccccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccc
Confidence 899999999997543333 3589999999999999999999999999999998887765
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.83 E-value=4.6e-20 Score=163.14 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc-cchh-----HH--H------HHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCC
Q psy14648 3 KYLARTYSKTLVFLITGLAIFSFR-HRVE-----PA--L------VIWSLILCLVGRACNIFPLAILVNRFR---EHQIT 65 (154)
Q Consensus 3 k~~la~l~e~~IFillGl~l~~~~-~~~~-----~~--~------ii~~~v~~~vaR~v~v~~~~~~~~~~~---~~~i~ 65 (154)
.+.+++++|+++|+++|++++... +.+. +. . .+..+..+...|+++++. ...|++. +++.+
T Consensus 264 w~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~ 341 (525)
T TIGR00831 264 WSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMK--PFSNRFLKKKPMEFG 341 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcccCCCC
Confidence 477899999999999999997532 1111 11 1 122233455677766554 3334322 34678
Q ss_pred chhhhhhhhhcchhHHHHHHHhhcccC------chhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCcc
Q psy14648 66 RRMMFIMWFSGLRGAISYALSLHLEFS------DETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQK 132 (154)
Q Consensus 66 ~~~~~v~~~~GlRGaVslALal~l~~~------~~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~ 132 (154)
|+++.+++|+|+||+|++|+++++|.. .|+|+.++++++++|++|+++||+|+||++|+++++++++
T Consensus 342 ~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~~~~~~~ 414 (525)
T TIGR00831 342 TRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLLVQGISLPIFVKRKFVSEHSE 414 (525)
T ss_pred hhhHHHheeccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCCCh
Confidence 999999999999999999999999854 3889999999999999999999999999999999976543
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.5e-20 Score=159.27 Aligned_cols=137 Identities=20% Similarity=0.234 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcchhH
Q psy14648 2 VKYLARTYSKTLVFLITGLAIFSFRH-RVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGA 80 (154)
Q Consensus 2 ~k~~la~l~e~~IFillGl~l~~~~~-~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~GlRGa 80 (154)
++|.+++++|+++|+++|.+++.... .+.+..++.+.+.++++|+++||++....+...+.+.+++++++++|+|+||+
T Consensus 279 fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~G~RG~ 358 (429)
T COG0025 279 FWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGV 358 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhcccccH
Confidence 57889999999999999999986653 33456678888999999999999999876622235689999999999999999
Q ss_pred HHHHHHhhcccCch--hhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCcccccccc
Q psy14648 81 ISYALSLHLEFSDE--TRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRRRR 138 (154)
Q Consensus 81 VslALal~l~~~~~--~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~~~~~~~ 138 (154)
++.|++++.|...+ .++.+..+++.+|++|+++||.+++|+.++++..++++.++...
T Consensus 359 vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~~~~~~~~~~~~ 418 (429)
T COG0025 359 VSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAKEIL 418 (429)
T ss_pred HHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCccchhhhHHH
Confidence 99999999986654 59999999999999999999999999999999977766544433
No 6
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.8e-17 Score=140.69 Aligned_cols=137 Identities=23% Similarity=0.374 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhhhccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcchhHHHHH
Q psy14648 6 ARTYSKTLVFLITGLAIFSFRH-RVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYA 84 (154)
Q Consensus 6 la~l~e~~IFillGl~l~~~~~-~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~GlRGaVslA 84 (154)
++++++..+|+.+|+-+...+. ..-...+++++..++++|++.||.... +.|.+++|..+++|.|+||||++-
T Consensus 273 ~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~l~------Pfrf~~~Ek~fvSWvGLRGAv~Ii 346 (574)
T COG3263 273 LAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLGLI------PFRFNRREKLFVSWVGLRGAVPII 346 (574)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhc------ccccCccchheeehhhcccchhhh
Confidence 6899999999999998876642 222234677889999999999998665 344799999999999999999999
Q ss_pred HHhhcccC-c-hhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCcccccccccCCCccceeeccccCC
Q psy14648 85 LSLHLEFS-D-ETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRRRRGRKGKTAISLSKTKEW 154 (154)
Q Consensus 85 Lal~l~~~-~-~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (154)
+|.. |.. + |+.+.+...+|.||+.|+++||.|++|..|++++..++... --.|+|..++.|++|
T Consensus 347 lAif-pm~aglena~l~FNvAF~VVLvSlliQG~tl~~~a~~l~~i~p~~~~-----pv~k~~ld~~~ta~~ 412 (574)
T COG3263 347 LAIF-PMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAAKKLKVIVPPRGG-----PVSKVGLDIHPTANW 412 (574)
T ss_pred Hhhh-HHhcCCccceEEeehhHHHHHHHHHHccCcchHHHHhcccccCCCCC-----CcccccccCCCCCCh
Confidence 9985 544 3 88889999999999999999999999999999998777432 223445556665554
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.62 E-value=2.9e-15 Score=133.35 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcchhHHH
Q psy14648 4 YLARTYSKTLVFLITGLAIFSFRHR-VEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAIS 82 (154)
Q Consensus 4 ~~la~l~e~~IFillGl~l~~~~~~-~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~GlRGaVs 82 (154)
+.++++++.+.|+++|+.+...... ..+..+++++++++++|+++++.... ..+.+++|+.+++|+|+||+++
T Consensus 273 ~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~------~~~~~~~e~~~i~~~g~RG~v~ 346 (562)
T PRK05326 273 DGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLL------PFRFNLREKLFISWVGLRGAVP 346 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCCCCHhhhheeeeecchhHHH
Confidence 4577899999999999998654321 12233444566788999999987654 2468999999999999999999
Q ss_pred HHHHhhcccC--chhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCcccc
Q psy14648 83 YALSLHLEFS--DETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIG 134 (154)
Q Consensus 83 lALal~l~~~--~~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~~~ 134 (154)
++++.. |.. .++.+.+..+++.+|++|+++||.+++|+.|++++..+++.+
T Consensus 347 i~lA~~-~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~~ 399 (562)
T PRK05326 347 IVLATF-PMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKLGVVVPPEAR 399 (562)
T ss_pred HHHHHH-HHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHcCCCCCCCCC
Confidence 999984 433 366778899999999999999999999999999998776653
No 8
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.14 E-value=2.8e-10 Score=104.77 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhh
Q psy14648 2 VKYLARTYSKTLVFLITGLAIFSFRH------RVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFS 75 (154)
Q Consensus 2 ~k~~la~l~e~~IFillGl~l~~~~~------~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~ 75 (154)
+.+.+..++|.++|+++|..++.... .+.|..+++++++++++|+..++.+..+.. ...+++|+.+++|.
T Consensus 292 f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~----~~~s~rErlFigWF 367 (810)
T TIGR00844 292 VSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIP----DIKSWREAMFIGHF 367 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cCCCHHHHHHheee
Confidence 45778999999999999999865431 134666788889999999998887544333 34689999999999
Q ss_pred cchhHHHHHHHhhc----c--cCc----------------hhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCC
Q psy14648 76 GLRGAISYALSLHL----E--FSD----------------ETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTS 128 (154)
Q Consensus 76 GlRGaVslALal~l----~--~~~----------------~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~ 128 (154)
|+||..|+-.+... + ... ...+.+-.++..+|+.|++++|.+.+|++---.++
T Consensus 368 GpRGIGSIyyl~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~lg~~~~ 442 (810)
T TIGR00844 368 GPIGVGAVFAAILSKSQLESHLTDEETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIMLGRYLN 442 (810)
T ss_pred ccccHHHHHHHHHHHHhhhcccCcccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHHhccccC
Confidence 99999986544431 1 000 01457888999999999999999999988654444
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=98.45 E-value=5.6e-08 Score=81.82 Aligned_cols=113 Identities=22% Similarity=0.249 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhccccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcc-hhHH
Q psy14648 6 ARTYSKTLVFLITGLAIFSFRH---RVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAI 81 (154)
Q Consensus 6 la~l~e~~IFillGl~l~~~~~---~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~Gl-RGaV 81 (154)
...+.+.+.|+++|+++..... ...+...+..++.++++|++.++...... +.+++++..++|++. ||++
T Consensus 264 ~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~ 337 (380)
T PF00999_consen 264 WYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLF------GIPWKEALFIGLGMLPRGEV 337 (380)
T ss_dssp -----------------------------------------------------------------HHHHTTTTSS--HHH
T ss_pred hhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhc------ccccchhHHHHHhhcCccHH
Confidence 3477889999999999974432 23445556667778899999998866633 579999999999999 9999
Q ss_pred HHHHHhhcccCchhhHHHHHHHHHHHHHHHhhhhhcHHHHHHH
Q psy14648 82 SYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKI 124 (154)
Q Consensus 82 slALal~l~~~~~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~ 124 (154)
+++++......+...+.+......++++|.+++|.+++|+++|
T Consensus 338 ~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~~ 380 (380)
T PF00999_consen 338 SLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLRK 380 (380)
T ss_dssp HHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhcC
Confidence 9999987655543344458888999999999999999999886
No 10
>KOG4505|consensus
Probab=96.64 E-value=0.0023 Score=54.77 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhh
Q psy14648 2 VKYLARTYSKTLVFLITGLAIFSFRHRV------EPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFS 75 (154)
Q Consensus 2 ~k~~la~l~e~~IFillGl~l~~~~~~~------~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~ 75 (154)
|.+.+..+.|..-|+|-|-.++-.+.++ -|..+++++..++.=|.-.+|..-++.. .-.+|||.+++.|=
T Consensus 292 v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iP----dikswkEALFvGhF 367 (467)
T KOG4505|consen 292 VSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIP----DIKSWKEALFVGHF 367 (467)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCc----chhhHHHHHHhccC
Confidence 5678899999999999998887554333 2667788888888878777765544333 23489999999999
Q ss_pred cchhHHHHHHHhh--ccc--Cc-------------hhhHHHHHHHHHHHHHHHhhhhhcHHHH--HHHhCC
Q psy14648 76 GLRGAISYALSLH--LEF--SD-------------ETRHVIITSTLIIVLVTTLVFGGSTMPL--MKILQT 127 (154)
Q Consensus 76 GlRGaVslALal~--l~~--~~-------------~~~~~i~~~t~~vVl~Tl~vqG~t~~~l--~~~L~i 127 (154)
|.-|.=++-.|+. ... .. .-.+.+.-.+...|+-|++++|.+.+-. .|+++.
T Consensus 368 GPIGVgAly~allar~~le~~ep~~~i~~~e~~~w~li~~iwpivsf~vlsSIiVHG~sv~~~tl~krl~t 438 (467)
T KOG4505|consen 368 GPIGVGALYYALLARKELETLEPEKSIYESETVFWTLIEIIWPIVSFTVLSSIIVHGSSVAMYTLGKRLNT 438 (467)
T ss_pred CCccHHHHHHHHHHHhhhccCCcccccCCccccchhhhhhhhhhhHHHHHHHHHhccchhhHHHHHhhhhh
Confidence 9966555444442 110 10 1234566778889999999999998844 444443
No 11
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.96 E-value=0.48 Score=43.10 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhh-cchhHHHHHHHh
Q psy14648 9 YSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFS-GLRGAISYALSL 87 (154)
Q Consensus 9 l~e~~IFillGl~l~~~~~~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~-GlRGaVslALal 87 (154)
+.-.+-|+.+|+++.......++..++...+..+++|++.++..... .+.++++...++.. ..||-.++.++.
T Consensus 269 lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~------~g~~~~~al~~g~~L~~~Gef~~vl~~ 342 (601)
T PRK03659 269 LLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARL------YGLRSSERMQFAGVLSQGGEFAFVLFS 342 (601)
T ss_pred HHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHhccccHHHHHHH
Confidence 44578899999887543211233444445566788999998875543 34677777765533 558888877655
Q ss_pred hcccCc----hhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhC
Q psy14648 88 HLEFSD----ETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQ 126 (154)
Q Consensus 88 ~l~~~~----~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~ 126 (154)
.--..+ +..+.++..+....+.|.++....-+++.++++
T Consensus 343 ~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~~~~~~~ 385 (601)
T PRK03659 343 AASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLARRLN 385 (601)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 321121 233333333333344455555444444444444
No 12
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=92.50 E-value=3.5 Score=35.69 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcc-hhHHHHHHHh
Q psy14648 9 YSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSL 87 (154)
Q Consensus 9 l~e~~IFillGl~l~~~~~~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~Gl-RGaVslALal 87 (154)
+.-.+=|+..|+++.......++.++........+.+.+..|......+ .+.+++....++-- ||..+++++-
T Consensus 277 ~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g------~~~~~~~~~g~~~~~~ge~~~v~~~ 350 (397)
T COG0475 277 LFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLG------FSKRLALGIGLLLRQGGEFAFVLAG 350 (397)
T ss_pred HHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHc------CcHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4556778999999865543333444556667778888888877665444 45666666555433 4455544444
Q ss_pred hcccCchhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCcc
Q psy14648 88 HLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQK 132 (154)
Q Consensus 88 ~l~~~~~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~ 132 (154)
. ...++..+.+...+..+.++++.+--...+++.++...+.+++
T Consensus 351 ~-~~~~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~~~~~~~~ 394 (397)
T COG0475 351 I-ALGSAISEALLTAVVILSMITTPILPLLTPILLKRLLKKSEDE 394 (397)
T ss_pred h-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 2 2222444455555445555555554555667677666555444
No 13
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=91.10 E-value=3.6 Score=39.11 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhhcccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcc-hhHHHHHHH
Q psy14648 10 SKTLVFLITGLAIFSFR--HRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALS 86 (154)
Q Consensus 10 ~e~~IFillGl~l~~~~--~~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~Gl-RGaVslALa 86 (154)
.--+-|+..|+++.... ..+.+..++..+++.++++++..+....+ .++++++.+.++..=- ||.+.+.++
T Consensus 327 flPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~------~g~~~~eal~lG~lm~~kG~~~Lii~ 400 (832)
T PLN03159 327 LLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFF------YTMPFREGITLGFLMNTKGLVEMIVL 400 (832)
T ss_pred HHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHhcccHHHHHHH
Confidence 33556888888875422 11233333444455567787766654432 3578999888776433 999988776
Q ss_pred hh
Q psy14648 87 LH 88 (154)
Q Consensus 87 l~ 88 (154)
..
T Consensus 401 ~i 402 (832)
T PLN03159 401 NV 402 (832)
T ss_pred HH
Confidence 64
No 14
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.30 E-value=2.2 Score=38.23 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcc-hhHHHHHHHh
Q psy14648 9 YSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSL 87 (154)
Q Consensus 9 l~e~~IFillGl~l~~~~~~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~Gl-RGaVslALal 87 (154)
+.-.+-|+.+|+++.......++..++...++.+++|++.++...... +.++++...++.+=- ||..++.++.
T Consensus 280 ~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~~~------g~~~~~a~~~gl~l~~~Gef~lii~~ 353 (558)
T PRK10669 280 AFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRLF------GHSRRTALTIAASLAQIGEFAFILAG 353 (558)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChhhHHHHHHHHhcccchHHHHHH
Confidence 345667888898875432111233334445667888998888755532 357777777666422 7887777665
Q ss_pred hcccCchhhHHHHHHHHHHHHHHHhh
Q psy14648 88 HLEFSDETRHVIITSTLIIVLVTTLV 113 (154)
Q Consensus 88 ~l~~~~~~~~~i~~~t~~vVl~Tl~v 113 (154)
.--..+--.+........++++|.++
T Consensus 354 ~~~~~gii~~~~~~~~v~~~~~t~~~ 379 (558)
T PRK10669 354 LGMALNLLPQAGQNLVLAGAILSIML 379 (558)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 42122222233333444555666666
No 15
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.65 E-value=6.7 Score=35.92 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcc-hhHHHHHHHh
Q psy14648 10 SKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSL 87 (154)
Q Consensus 10 ~e~~IFillGl~l~~~~~~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~Gl-RGaVslALal 87 (154)
.-.+-|+.+|+++.......++..++..++..++++++.++..... .+.++++...+++.=- +|-.++.++.
T Consensus 273 ll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~------~g~~~~~a~~~gl~L~~~Gef~~vl~~ 345 (621)
T PRK03562 273 LLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP------LGVPRKQRRWFAVLLGQGGEFAFVVFG 345 (621)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCHhHHHHHHHHHhccccHHHHHHH
Confidence 3477888899887543211233333444456778899888876553 2467888888777333 7777766654
No 16
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=41.28 E-value=2.3e+02 Score=25.16 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh----cCCCCchhhhhhhhhcchhHHHHHHHhhccc-CchhhHHHHHHHHHHHHHHHh
Q psy14648 38 LILCLVGRACNIFPLAILVNRFR----EHQITRRMMFIMWFSGLRGAISYALSLHLEF-SDETRHVIITSTLIIVLVTTL 112 (154)
Q Consensus 38 ~v~~~vaR~v~v~~~~~~~~~~~----~~~i~~~~~~v~~~~GlRGaVslALal~l~~-~~~~~~~i~~~t~~vVl~Tl~ 112 (154)
.+-++++.++.++..+++.-+++ +.+.+|++..-++ +=++|.+.+++-+.. ..++.+..-..-.++.+-|+
T Consensus 325 ~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~---~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~- 400 (423)
T PRK14855 325 FLGLLLGKPLGVVGGAWLAVRLGLASLPRRVNWLHMLGAG---LLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASV- 400 (423)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHH-
Confidence 46678999999999999998875 3456666655543 467788888875422 12222233333334444443
Q ss_pred hhhhcHHHHHHHhCCCCCcc
Q psy14648 113 VFGGSTMPLMKILQTSSNQK 132 (154)
Q Consensus 113 vqG~t~~~l~~~L~i~~~~~ 132 (154)
+-|..-.-+++....+++.|
T Consensus 401 ~aai~G~~~L~~~~~~~~~~ 420 (423)
T PRK14855 401 LAALLGAGWLWWAVRGQPGE 420 (423)
T ss_pred HHHHHHHHHHHHhccCCCCC
Confidence 33543334445444444433
No 17
>COG2855 Predicted membrane protein [Function unknown]
Probab=39.68 E-value=1.3e+02 Score=25.85 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=39.1
Q ss_pred CCCCchhhhhhhhhcc-hhHHHHHHHhhcccCc-hhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCc
Q psy14648 62 HQITRRMMFIMWFSGL-RGAISYALSLHLEFSD-ETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQ 131 (154)
Q Consensus 62 ~~i~~~~~~v~~~~Gl-RGaVslALal~l~~~~-~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~ 131 (154)
-+.+++....+.-+-- =||-+.+..- |.-+ +++|....++..+++-|+. -...|.+.+++++++++
T Consensus 117 lgld~~~a~Lia~GssICGasAiaA~~--pvika~~~eva~aIa~V~lfgtia--~llyP~l~~~l~l~~~~ 184 (334)
T COG2855 117 LGLDKKLALLIAAGSSICGASAIAATA--PVIKAEEEEVAVAIAVVVLFGTLA--MLLYPLLYPLLGLSPEQ 184 (334)
T ss_pred hCCCHHHHHHHHccchhhHHHHHHHhC--CcCCCCccccceehhhHHHHHHHH--HHHHHHHHHHhCCCcch
Confidence 4578888777766543 6666655444 4444 4455555554444444443 35567888888866654
No 18
>COG4791 EscT Type III secretory pathway, component EscT [Intracellular trafficking and secretion]
Probab=33.96 E-value=88 Score=25.88 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcc-hhHHHHHHHhh
Q psy14648 35 IWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSLH 88 (154)
Q Consensus 35 i~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~Gl-RGaVslALal~ 88 (154)
+++......+|+.+++...+++|.. -.+|+ |++|++++++-
T Consensus 9 ~l~~~~L~~~R~l~if~iLP~l~~~-------------l~~~liRngi~~s~al~ 50 (259)
T COG4791 9 LLVALALLLARPLGIFSILPVLNAG-------------LLSGLIRNGIAISLALP 50 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------------ccchhhhhHHHHHHHHH
Confidence 3445667789999999999988842 23555 99999998885
No 19
>PF11836 DUF3356: Protein of unknown function (DUF3356); InterPro: IPR021791 This entry consists of bacterial and phage proteins whose function is not currently known. Many of the bacterial sequences are found within known or suspected prophages or gene transfer agents (GTA). Gene transfer agents are related to bacteriophages, but are distinguished by cellular regulatory mechanisms that strongly suggest they are more than just defective prophages [, ].
Probab=32.89 E-value=37 Score=23.83 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=20.6
Q ss_pred HHHhhhcCCCCchhhhhhhhhcchhH
Q psy14648 55 LVNRFREHQITRRMMFIMWFSGLRGA 80 (154)
Q Consensus 55 ~~~~~~~~~i~~~~~~v~~~~GlRGa 80 (154)
+.+++...+++.++..-+.|.||||+
T Consensus 38 L~~Rf~~g~~s~~Dv~~vi~~GL~Gg 63 (101)
T PF11836_consen 38 LVERFETGRFSARDVRAVIRAGLIGG 63 (101)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCC
Confidence 44445445689999999999999997
No 20
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=32.81 E-value=1.2e+02 Score=21.81 Aligned_cols=14 Identities=50% Similarity=0.776 Sum_probs=12.3
Q ss_pred chhHHHHHHHhhcc
Q psy14648 77 LRGAISYALSLHLE 90 (154)
Q Consensus 77 lRGaVslALal~l~ 90 (154)
+|||++++.++.+|
T Consensus 2 lrgaIP~gi~~Gl~ 15 (121)
T PF06695_consen 2 LRGAIPLGIALGLP 15 (121)
T ss_pred chhhHHHHHHcCCC
Confidence 69999999988766
No 21
>PF15050 SCIMP: SCIMP protein
Probab=30.70 E-value=74 Score=23.49 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhhcHHHHHHHhCCCCC-cccccccccCCCc
Q psy14648 102 STLIIVLVTTLVFGGSTMPLMKILQTSSN-QKIGRRRRGRKGK 143 (154)
Q Consensus 102 ~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~-~~~~~~~~~~~~~ 143 (154)
++.++|++|+.+ |+.+.++.||+--+.. -+..+.+.|+.+.
T Consensus 12 LAVaII~vS~~l-glIlyCvcR~~lRqGkkweiakp~k~~~rd 53 (133)
T PF15050_consen 12 LAVAIILVSVVL-GLILYCVCRWQLRQGKKWEIAKPLKQKQRD 53 (133)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHccccceeccchhhhccc
Confidence 334466666655 9999999997655433 3445555555554
No 22
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.03 E-value=3.1e+02 Score=20.89 Aligned_cols=66 Identities=14% Similarity=0.313 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhhcch-h--HHHHHHHhhcccC-c-hhhHHHHHHHHHHHH
Q psy14648 36 WSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLR-G--AISYALSLHLEFS-D-ETRHVIITSTLIIVL 108 (154)
Q Consensus 36 ~~~v~~~vaR~v~v~~~~~~~~~~~~~~i~~~~~~v~~~~GlR-G--aVslALal~l~~~-~-~~~~~i~~~t~~vVl 108 (154)
.+++.++.+-.+=+.. ...+..|++++ .+.+-+||. + |.--||+.++..+ + +.....+..+++++.
T Consensus 15 sal~a~~~AQvIKv~I-----~~~~~rk~~~~--~~~sTGGMPSsHSA~VtALat~ial~~G~dS~lFaiA~vfaiIv 85 (153)
T COG1963 15 SALVAILLAQVIKVLI-----ELIRTRKLNVT--LLFSTGGMPSSHSALVTALATSIALTEGLDSPLFAIAAVFAIIV 85 (153)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhccccce--eeeecCCCCchHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 3445555555543322 22222345554 788899983 3 2223444433222 2 444456666665554
No 23
>KOG1650|consensus
Probab=22.76 E-value=6.7e+02 Score=23.90 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=26.8
Q ss_pred CCCCchhhhhhhhhcc-hhHHHHHHHhhcccCchhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCC
Q psy14648 62 HQITRRMMFIMWFSGL-RGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQT 127 (154)
Q Consensus 62 ~~i~~~~~~v~~~~Gl-RGaVslALal~l~~~~~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i 127 (154)
.|+|+++.+.+...=. +|-+.+..--. .-+++.+-.-++.+-++..+++-..++|+++.+.-
T Consensus 360 ~k~p~~~~l~l~~lm~~kgl~el~~~~~----~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~ 422 (769)
T KOG1650|consen 360 CKLPLRDSLALGLLMSTKGLVELIVLNT----GLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYD 422 (769)
T ss_pred hcCchhHHHHHHHHHHhhhHHHHHHHHH----HhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 4567777665444222 33332222111 11222222233333344444444447777776663
No 24
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.74 E-value=88 Score=27.39 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=41.1
Q ss_pred hhhhhcchhHHHHHHHhhcccCchhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCC
Q psy14648 71 IMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSN 130 (154)
Q Consensus 71 v~~~~GlRGaVslALal~l~~~~~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~ 130 (154)
=..++..||+.++|..+- ..++..|.++|-.|++..|..--|.+-+-+.+++
T Consensus 94 g~lfg~v~gglA~avi~V--------gallaatTGvVaAsVvaMGlISlpiMLryGYd~~ 145 (447)
T COG4664 94 GQLFGPVRGGLAYAVIIV--------GALLAATTGVVAASVVAMGLISLPIMLRYGYDRK 145 (447)
T ss_pred HHHhCCCCCchhhHHHHH--------HHHHHHhhchHHHHHHHhhhhcchHHHHhCCCcc
Confidence 356788999999988772 2678888999999999999877777776666554
No 25
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=22.00 E-value=86 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc
Q psy14648 3 KYLARTYSKTLVFLITGLAIFSF 25 (154)
Q Consensus 3 k~~la~l~e~~IFillGl~l~~~ 25 (154)
|+.+..+.|+++|.|+|-+++..
T Consensus 175 rDimGtm~NTLifay~g~sl~l~ 197 (244)
T PF07907_consen 175 RDIMGTMINTLIFAYIGSSLPLL 197 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999888643
No 26
>PF14143 YrhC: YrhC-like protein
Probab=21.69 E-value=2.5e+02 Score=18.61 Aligned_cols=24 Identities=25% Similarity=0.081 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc
Q psy14648 3 KYLARTYSKTLVFLITGLAIFSFR 26 (154)
Q Consensus 3 k~~la~l~e~~IFillGl~l~~~~ 26 (154)
|.+.--+.--..|+|+|..+|...
T Consensus 11 Krf~~vLLAvs~FlYiG~viP~~~ 34 (72)
T PF14143_consen 11 KRFAFVLLAVSTFLYIGTVIPIGA 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccc
Confidence 334444555668999999998553
Done!